Citrus Sinensis ID: 010936
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RXN0 | 703 | ABC transporter G family | yes | no | 0.911 | 0.644 | 0.843 | 0.0 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.899 | 0.646 | 0.567 | 1e-149 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.873 | 0.631 | 0.593 | 1e-149 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.828 | 0.607 | 0.550 | 1e-132 | |
| Q9ZUU9 | 730 | ABC transporter G family | no | no | 0.818 | 0.557 | 0.420 | 4e-88 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.826 | 0.625 | 0.359 | 3e-63 | |
| Q5MB13 | 654 | ATP-binding cassette sub- | yes | no | 0.770 | 0.585 | 0.366 | 9e-63 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.824 | 0.624 | 0.356 | 2e-62 | |
| Q55DW4 | 793 | ABC transporter G family | yes | no | 0.482 | 0.302 | 0.467 | 2e-62 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.770 | 0.584 | 0.368 | 6e-62 |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/461 (84%), Positives = 423/461 (91%), Gaps = 8/461 (1%)
Query: 11 MEIEASKP--------AGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461
|
Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/456 (56%), Positives = 341/456 (74%), Gaps = 9/456 (1%)
Query: 37 KEKINTEFSGDVSARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGK 95
+ ++ ++ A L W+DLTV++ S+G T +L+ L GYAEPG + A+MGPSGSGK
Sbjct: 10 RRQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGK 69
Query: 96 STLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155
STLLD+L+ RLA N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA L
Sbjct: 70 STLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHL 129
Query: 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215
RLP M E +VE TI+E+GLQDC+D VIGNWH RG+SGGER+RVSIALEIL RP++
Sbjct: 130 RLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQI 189
Query: 216 LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
LFLDEPTSGLDSA+AFFV Q LR ++RDGRTVI+S+HQPSSEVF LFD L+LLS G++VY
Sbjct: 190 LFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVY 249
Query: 276 FGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPL 333
FGE +A EFFA++GFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL
Sbjct: 250 FGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ-ETPATSDPL 308
Query: 334 EKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDA-GGSQASFLMQAFTLTKR 392
+ T+ L++ Y+ S+++ +AK ++ +S ++G ++ GS+A++ Q TLT R
Sbjct: 309 MNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTAR 368
Query: 393 SFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG 452
SF+NM RD GYYW R++ Y+VV+I +GTI+ +VG Y SILAR SC F+ GF+TFMSIG
Sbjct: 369 SFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIG 428
Query: 453 GFPSFVEDMKVSLLIFYPTAVAKFIKRGVINISSVI 488
GFPSF+E+MKV FY ++ + V +S+ I
Sbjct: 429 GFPSFLEEMKV----FYKERLSGYYGVSVYILSNYI 460
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/445 (59%), Positives = 336/445 (75%), Gaps = 11/445 (2%)
Query: 50 ARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A L W+DLTV++ S G T +L+GL G+AEPG + A+MGPSGSGKSTLLD+L+ RLA
Sbjct: 22 AYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLAR 81
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA LRL + E
Sbjct: 82 NVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVND 141
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+VE TIIE+GLQDCAD VIGNWH RG+SGGER+RVS+ALEIL RP++LFLDEPTSGLDSA
Sbjct: 142 IVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSA 201
Query: 229 AAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+AFFV Q LR ++RD GRTV++SIHQPSSEVF LFD L+LLS G+TVYFGE+ A EFFA
Sbjct: 202 SAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFA 261
Query: 288 QAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEAIKNL 345
+AGFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL + T+E L
Sbjct: 262 EAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIR-ETPATSDPLMNLATSEIKARL 320
Query: 346 IDFYQTSQHSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 403
++ Y+ S ++ +AK ++ ++ ++G + GS+A++ Q TLTKRSFVNM RD GY
Sbjct: 321 VENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGY 380
Query: 404 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
YW R+VIY+VV+ C+GTI+ +VG Y SILAR SC F+ GF+TFMSIGGFPSF+E+MKV
Sbjct: 381 YWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKV 440
Query: 464 SLLIFYPTAVAKFIKRGVINISSVI 488
FY ++ + V IS+ +
Sbjct: 441 ----FYKERLSGYYGVSVYIISNYV 461
|
Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/425 (55%), Positives = 314/425 (73%), Gaps = 13/425 (3%)
Query: 52 LTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
+ W+DLTV++ G T +L G+ G EP + A+MGPSGSGKSTLLDAL+ RLA N
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 111 FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
+SG +L+NG K +L FG AAYVTQ+D L+GTLTVRE+ISYSA LRLP K+ E +V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
E TI +MGL++C+D IGNWHLRGISGGE++R+SIALE+L +P LLFLDEPTSGLDSA+A
Sbjct: 130 EATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASA 189
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
FFV Q LR ++ G+TV++SIHQPS EVF LFD L LLSGG+TVYFGE +A +FF +AG
Sbjct: 190 FFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAG 249
Query: 291 FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLK---------FETSD--DPLEKITTA 339
FPCP+ RNPSDHFLRC+NSDFD V A L S ++ ET++ DPL+ I TA
Sbjct: 250 FPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTA 309
Query: 340 EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFLMQAFTLTKRSFVNMS 398
E L+ ++ S ++ A++ +++ I+ + G V + GSQ ++ Q LT+RSF+NMS
Sbjct: 310 EIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFINMS 369
Query: 399 RDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFV 458
RD GYYW+R+ +Y+V++IC+G+I+ NVG + ++++ +C F+ GF+TFMSIGGF SF+
Sbjct: 370 RDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQSFI 429
Query: 459 EDMKV 463
E+MKV
Sbjct: 430 EEMKV 434
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 270/416 (64%), Gaps = 9/416 (2%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
A + WKDLTV + + V++ GYA PGT+T +MGP+ SGKSTLL AL+ RL +
Sbjct: 112 ASIAWKDLTVTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPS 171
Query: 110 AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
A + G + +NG K+ + +G+ +V ++ LIG+LTVRE + YSA L+LP + +KR++
Sbjct: 172 AKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFL--FQKRSV 229
Query: 170 VERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
VE I M L D A+ +IG + +++G+ GERRRVSIA E++MRP +LF+DEP LDS
Sbjct: 230 VEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSV 289
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+A + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FGET A + F+
Sbjct: 290 SALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 349
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDF 348
AGFPCP +++PSDHFLR IN+DFD++ A K + + D + TA AI+ L
Sbjct: 350 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCK---NWQDDNGDFSAVNMDTAVAIRTLEAT 406
Query: 349 YQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 408
Y++S + + + + +++ +GT L + G +A + LT RS + MSR++ YYWLRL
Sbjct: 407 YKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSLLVMSREWKYYWLRL 465
Query: 409 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGGFPSFVEDMKV 463
++Y+++T+ IGT+Y +G +S+ R A FVF F + + I G PS ++++K+
Sbjct: 466 ILYMILTLSIGTLYSGLGHSLSSVATR-VAAVFVFVSFASLLGIAGIPSLLKEIKI 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 158/440 (35%), Positives = 231/440 (52%), Gaps = 29/440 (6%)
Query: 40 INTEFSGDVSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGS 93
+ T GDV L++ +T V + +G +L + G +PG L A++GP+G
Sbjct: 28 VRTLAEGDV---LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGG 83
Query: 94 GKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYS 152
GKS+LLD L++R LSG +L+NG F + YV QDD ++GTLTVRE + +S
Sbjct: 84 GKSSLLDVLAARKDPKG-LSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFS 142
Query: 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
A LRLP M EK + I E+GL+ AD+ +G +RGISGGER+R SI +E++
Sbjct: 143 AALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITD 202
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ GK
Sbjct: 203 PSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGK 262
Query: 273 TVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDP 332
V+ G A E+FA AG+ C NP+D FL IN D ++ L E D+
Sbjct: 263 LVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGD--------SSAVMLNREEQDNE 314
Query: 333 LEKITTAE-----AIKNLIDFYQTSQ---HSYAAKEKVEGISKVKGT-VLDAGGSQASFL 383
K I+NL +FY S + A +++ G + KGT SF
Sbjct: 315 ANKTEEPSKGEKPVIENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFC 374
Query: 384 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF 443
Q + +RSF N+ + +L++ V++ + IG IY ++ + R F+
Sbjct: 375 HQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGAIYFDLKYDAAGMQNRAGVLFFLT 434
Query: 444 GFVTFMSIGGFPSFVEDMKV 463
F S+ FV + K+
Sbjct: 435 TNQCFSSVSAVELFVVEKKL 454
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 218/401 (54%), Gaps = 18/401 (4%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G +PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG-LSGDVLINGALRPTNFKCN 120
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRLP M EK + R I E+GL AD+ +G
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIF 240
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ G+ ++ G A +F AG+ C A NP+D FL IN
Sbjct: 241 SIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIING 300
Query: 310 DFDKV----KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTS---QHSYAAKEKV 362
D V + K + ++ D PL ++ L + Y S + + A ++
Sbjct: 301 DSTAVALNREEDFKATEIIEPSKRDKPL--------VEKLAEIYVDSSFYKETKAELHQL 352
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
G K K TV SF Q ++KRSF N+ + ++++ V++ + IG IY
Sbjct: 353 SGGEKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVILGLVIGAIY 412
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
+ I R F+ F S+ FV + K+
Sbjct: 413 FGLNNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKL 453
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells. Macaca mulatta (taxid: 9544) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 153/429 (35%), Positives = 230/429 (53%), Gaps = 19/429 (4%)
Query: 46 GDVSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL 99
GDV L++ +T V + +G +L + G +PG L A++GP+G GKS+LL
Sbjct: 34 GDV---LSFHHITYRVKVKSGFLVRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLL 89
Query: 100 DALSSRLASNAFLSGTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP 158
D L++R LSG +L+NG +F ++ YV QDD ++GTLTVRE + +SA LRLP
Sbjct: 90 DVLAARKDPRG-LSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLP 148
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218
M EK + I E+GL AD+ +G RGISGGER+R SI +E++ P +LFL
Sbjct: 149 KAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFL 208
Query: 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
DEPT+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ GK ++ G
Sbjct: 209 DEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGP 268
Query: 279 TSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITT 338
A E+FA AG+ C NP+D FL IN D V +G + +++P ++
Sbjct: 269 AQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAVMLN-RGEQDHEANKTEEPSKR--E 325
Query: 339 AEAIKNLIDFYQTSQ---HSYAAKEKVEGISKVKG-TVLDAGGSQASFLMQAFTLTKRSF 394
I+NL +FY S + A +++ K KG + SF Q + +RSF
Sbjct: 326 KPIIENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSF 385
Query: 395 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF 454
N+ + +L++ V++ + IG +Y + + R F+ F S+
Sbjct: 386 KNLLGNPQASVAQLIVTVILGLIIGALYFGLKNDPTGMQNRAGVFFFLTTNQCFTSVSAV 445
Query: 455 PSFVEDMKV 463
FV + K+
Sbjct: 446 ELFVVEKKL 454
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 170/246 (69%), Gaps = 6/246 (2%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--G 128
+L + G+ E GT+ A+MGPSG+GK+TLLD L+ RL N SGT+ LNG+K+ +
Sbjct: 138 ILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNING--SGTMYLNGNKSDFNIFKK 195
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
YVTQ D+L+ +LTVRET+++ A+L++P +P EK V+ I EMGL CADT++G
Sbjct: 196 LCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVG 255
Query: 189 --NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +RGISGGERRRV+I++E+L P ++ LDEPTSGLD++ +F+V L+ L++ GRT
Sbjct: 256 TADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRT 315
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRC 306
+I +IHQP S ++++FD L LL G T+Y+G+ + A E+F G+ C NP+D FL
Sbjct: 316 IICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDL 375
Query: 307 INSDFD 312
IN+ +
Sbjct: 376 INTQVE 381
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 216/402 (53%), Gaps = 19/402 (4%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G +PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG-LSGDVLINGAPRPANFKCN 120
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRL M EK + R I E+GL AD+ +G
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIF 240
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ G+ ++ G A +F AG+ C A NP+D FL IN
Sbjct: 241 SIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIING 300
Query: 310 DFDKV----KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGI 365
D V + K + ++ D PL I+ L + Y S K ++ +
Sbjct: 301 DSTAVALNREEDFKATEIIEPSKQDKPL--------IEKLAEIYVNSSFYKETKAELHQL 352
Query: 366 S----KVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 421
S K K TV SF Q ++KRSF N+ + ++++ VV+ + IG I
Sbjct: 353 SGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAI 412
Query: 422 YLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
Y + I R F+ F S+ FV + K+
Sbjct: 413 YFGLKNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKL 454
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| 255569405 | 705 | ATP-binding cassette transporter, putati | 0.929 | 0.655 | 0.902 | 0.0 | |
| 225454545 | 705 | PREDICTED: ABC transporter G family memb | 0.929 | 0.655 | 0.902 | 0.0 | |
| 147773147 | 716 | hypothetical protein VITISV_006943 [Viti | 0.929 | 0.645 | 0.902 | 0.0 | |
| 449469450 | 696 | PREDICTED: ABC transporter G family memb | 0.911 | 0.650 | 0.894 | 0.0 | |
| 32364696 | 705 | ABC transporter [Gossypium hirsutum] | 0.931 | 0.656 | 0.870 | 0.0 | |
| 356559983 | 706 | PREDICTED: ABC transporter G family memb | 0.931 | 0.655 | 0.863 | 0.0 | |
| 356531001 | 707 | PREDICTED: ABC transporter G family memb | 0.931 | 0.654 | 0.859 | 0.0 | |
| 224118648 | 698 | white-brown-complex ABC transporter fami | 0.905 | 0.644 | 0.850 | 0.0 | |
| 22329638 | 703 | ABC transporter G family member 11 [Arab | 0.911 | 0.644 | 0.843 | 0.0 | |
| 297844740 | 703 | abc transporter family protein [Arabidop | 0.911 | 0.644 | 0.841 | 0.0 |
| >gi|255569405|ref|XP_002525670.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223535106|gb|EEF36788.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/463 (90%), Positives = 445/463 (96%), Gaps = 1/463 (0%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR+ AA++ +MEIEASKPAGN ++V LSPLSET+W+EK NTE GDVSARLTWKDLTVM
Sbjct: 1 MRN-AANHTMMEIEASKPAGNGMLVAALSPLSETLWREKTNTELVGDVSARLTWKDLTVM 59
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNGET NVLEGLTGYAEPG+LTALMGPSGSGKSTLLDALSSRLA+NAFLSGTILLNG
Sbjct: 60 VTLSNGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNG 119
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR LVE TIIEMGLQ
Sbjct: 120 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRALVESTIIEMGLQ 179
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 180 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 239
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPS
Sbjct: 240 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPS 299
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE+S+DPLEKITTAEAI+ L+++Y+TSQ+ YAA+E
Sbjct: 300 DHFLRCINSDFDKVKATLKGSMKLRFESSEDPLEKITTAEAIRTLVNYYRTSQYYYAARE 359
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIY+VVT+CIGT
Sbjct: 360 KVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYIVVTVCIGT 419
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 420 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 462
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454545|ref|XP_002262619.1| PREDICTED: ABC transporter G family member 11 [Vitis vinifera] gi|297737190|emb|CBI26391.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/463 (90%), Positives = 439/463 (94%), Gaps = 1/463 (0%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR+SA +N +MEIEASKP VVGGLSPLSET+WKE+ +TEF GDVSARLTWKDLTVM
Sbjct: 1 MRNSA-NNAMMEIEASKPPAMGYVVGGLSPLSETLWKERTDTEFVGDVSARLTWKDLTVM 59
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNGET VLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSG+ILLNG
Sbjct: 60 VTLSNGETQKVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGSILLNG 119
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM WSEKR LVE TIIEMGLQ
Sbjct: 120 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMRWSEKRALVESTIIEMGLQ 179
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 180 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 239
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCP LRNPS
Sbjct: 240 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPTLRNPS 299
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEK+TTAEAI+ LIDFY+TSQ+SYAAKE
Sbjct: 300 DHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKE 359
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGT
Sbjct: 360 KVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGT 419
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
IYL+VGT YNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 420 IYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773147|emb|CAN69297.1| hypothetical protein VITISV_006943 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/463 (90%), Positives = 439/463 (94%), Gaps = 1/463 (0%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR+SA +N +MEIEASKP VVGGLSPLSET+WKE+ +TEF GDVSARLTWKDLTVM
Sbjct: 1 MRNSA-NNAMMEIEASKPPAMGYVVGGLSPLSETLWKERTDTEFVGDVSARLTWKDLTVM 59
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNGET VLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSG+ILLNG
Sbjct: 60 VTLSNGETQKVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGSILLNG 119
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM WSEKR LVE TIIEMGLQ
Sbjct: 120 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMRWSEKRALVESTIIEMGLQ 179
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 180 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 239
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCP LRNPS
Sbjct: 240 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPTLRNPS 299
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEK+TTAEAI+ LIDFY+TSQ+SYAAKE
Sbjct: 300 DHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKE 359
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VVTICIGT
Sbjct: 360 KVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGT 419
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
IYL+VGT YNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 420 IYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469450|ref|XP_004152433.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus] gi|449524820|ref|XP_004169419.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/453 (89%), Positives = 424/453 (93%)
Query: 11 MEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHN 70
MEIEASK GN V GLSPLSET+W+EK NTE GDVSARLTWKDLTVMV+LSNGE
Sbjct: 1 MEIEASKSTGNGAVAIGLSPLSETLWREKTNTEIVGDVSARLTWKDLTVMVSLSNGEVQK 60
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG KTKLSFG A
Sbjct: 61 VLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGRKTKLSFGAA 120
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
AYVTQDDNLIGTLTVRETI+YSARLRLPDKMPW EKR L+E TIIEMGLQDCADTVIGNW
Sbjct: 121 AYVTQDDNLIGTLTVRETIAYSARLRLPDKMPWEEKRALIESTIIEMGLQDCADTVIGNW 180
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
HLRGISGGE+RRVSIA+EILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSRDGRTVIAS
Sbjct: 181 HLRGISGGEKRRVSIAIEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIAS 240
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSD 310
IHQPSSEVFELFD+LYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDHFLRCINSD
Sbjct: 241 IHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSD 300
Query: 311 FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG 370
FDKVKATLKGSMKL+FE+SDDPLE+ITTAEA++ LIDFY++SQH YAA EKVE ISK KG
Sbjct: 301 FDKVKATLKGSMKLRFESSDDPLERITTAEAMRTLIDFYRSSQHCYAALEKVEEISKYKG 360
Query: 371 TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN 430
TVLD GGSQASF MQAFTLTKRSF+NMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN
Sbjct: 361 TVLDLGGSQASFFMQAFTLTKRSFINMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN 420
Query: 431 SILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
SILARGSCASFVFGFVTFMSIGGFPSF EDMKV
Sbjct: 421 SILARGSCASFVFGFVTFMSIGGFPSFAEDMKV 453
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32364696|gb|AAP80385.1| ABC transporter [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/463 (87%), Positives = 434/463 (93%)
Query: 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVM 60
MR S ++ +MEI+A+KPAG +VVGGLSPLSET+W+EK +TE GDVSARLTW+DLTVM
Sbjct: 1 MRTSPSNTAMMEIQANKPAGTGMVVGGLSPLSETLWREKTDTELMGDVSARLTWEDLTVM 60
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VTLSNG T VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA+NAFLSGTILLNG
Sbjct: 61 VTLSNGATQKVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNG 120
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD MPWS KR LVE TIIEMGLQ
Sbjct: 121 RKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDTMPWSAKRDLVEGTIIEMGLQ 180
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR L
Sbjct: 181 DCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGL 240
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
SRDGRTVIAS+HQPSSEVFELFD+LYLLS GKT+YFG+ S A+EFFAQAGFPCPALRNPS
Sbjct: 241 SRDGRTVIASVHQPSSEVFELFDQLYLLSEGKTIYFGQASEAYEFFAQAGFPCPALRNPS 300
Query: 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE 360
DHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEKITT EAI+ LI+FY+TS YAAKE
Sbjct: 301 DHFLRCINSDFDKVKATLKGSMKLRFEASDDPLEKITTTEAIRTLINFYRTSHQCYAAKE 360
Query: 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 420
KV+ ISKV+GTVLD+GGSQASFLMQ++TLTKRSFVNMSRDFGYYWLRL+IYVVVT+CIGT
Sbjct: 361 KVDEISKVRGTVLDSGGSQASFLMQSYTLTKRSFVNMSRDFGYYWLRLLIYVVVTVCIGT 420
Query: 421 IYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
IYLN+GT YNSILARG+CASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 IYLNIGTSYNSILARGACASFVFGFVTFMSIGGFPSFVEDMKV 463
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559983|ref|XP_003548275.1| PREDICTED: ABC transporter G family member 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/468 (86%), Positives = 440/468 (94%), Gaps = 5/468 (1%)
Query: 1 MRDS-AASNVIMEIEASKPA---GNSIVVGGLSPLSETIWKEKINT-EFSGDVSARLTWK 55
MR+S A ++ MEIEA++P+ G++I + GLSPLSET+W+EK NT E GDVSARLTWK
Sbjct: 1 MRNSEAPTHGGMEIEATRPSAGNGSTITLPGLSPLSETLWREKANTAEIIGDVSARLTWK 60
Query: 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT 115
DLTVMVTLSNGET NVLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSGT
Sbjct: 61 DLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGT 120
Query: 116 ILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
ILLNG K KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD MPW++KR LVE TI+
Sbjct: 121 ILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWADKRALVESTIV 180
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
MGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQ
Sbjct: 181 AMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQ 240
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPA 295
TLR L+RDGRTVIASIHQPSSEVFELFD+LYLLS GKTVYFG+ S A+EFFAQAGFPCPA
Sbjct: 241 TLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPA 300
Query: 296 LRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHS 355
LRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPL++ITTAEAI+ LIDFY+TSQHS
Sbjct: 301 LRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHS 360
Query: 356 YAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVT 415
YAA++KV+ ISKVKGTVL+AGGS+ASFLMQ++TLTKRSF+NMSRDFGYYWLRLVIY+VVT
Sbjct: 361 YAARQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVT 420
Query: 416 ICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 VCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 468
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531001|ref|XP_003534067.1| PREDICTED: ABC transporter G family member 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/469 (85%), Positives = 438/469 (93%), Gaps = 6/469 (1%)
Query: 1 MRDSAASNV--IMEIEAS-KPAGN--SIVVGGLSPLSETIWKEKINT-EFSGDVSARLTW 54
MR+S A +MEIEA+ +P+GN + + GLSPLSET+W+EK NT E GDVSARLTW
Sbjct: 1 MRNSEAPTHGGMMEIEATTRPSGNGSTTTLPGLSPLSETLWREKANTAEIIGDVSARLTW 60
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
KDLTVMVTLSNGET NVLEGLTGYAEPGT TALMGPSGSGKSTLLDALSSRLA+NAFLSG
Sbjct: 61 KDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSG 120
Query: 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
TILLNG K KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD MPW++KR LVE TI
Sbjct: 121 TILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWADKRALVESTI 180
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
+ MGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVT
Sbjct: 181 VAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVT 240
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP 294
QTLR L+RDGRTVIASIHQPSSEVFELFD+LYLLS GKTVYFG+ S A+EFFAQAGFPCP
Sbjct: 241 QTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCP 300
Query: 295 ALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQH 354
ALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPL++ITTAEAI+ LIDFY+TSQH
Sbjct: 301 ALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQH 360
Query: 355 SYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVV 414
SYAA++KV+ IS+VKGTVL+AGGS+ASFLMQ++TLTKRSF+NMSRDFGYYWLRLVIY+VV
Sbjct: 361 SYAARQKVDEISRVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVV 420
Query: 415 TICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
T+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 TVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 469
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118648|ref|XP_002331414.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222873628|gb|EEF10759.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/469 (85%), Positives = 431/469 (91%), Gaps = 19/469 (4%)
Query: 2 RDSAASNVIMEIEASKPAG-------NSIVVGGLSPLSETIWKEKINTEFSGDVSARLTW 54
R+ + + VIMEIEAS P+G + VVGGLSPLSET+W+++ +TEF GDVSARLTW
Sbjct: 3 RNPSPNKVIMEIEASIPSGIVEGIAVDGTVVGGLSPLSETLWRDRTSTEFVGDVSARLTW 62
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
KDLTVMVTL +GET NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA+NAFLSG
Sbjct: 63 KDLTVMVTLGSGETQNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAANAFLSG 122
Query: 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
T+LLNG KTKLSFGTAAYVTQDDNL+GTLTVRETIS+SARLRLPDKMPWSEKR LVE TI
Sbjct: 123 TVLLNGRKTKLSFGTAAYVTQDDNLLGTLTVRETISFSARLRLPDKMPWSEKRALVESTI 182
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
IEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVT
Sbjct: 183 IEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVT 242
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP 294
QTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF AGFPCP
Sbjct: 243 QTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF------------AGFPCP 290
Query: 295 ALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQH 354
ALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDP+EKITTAEAI++LI +Y+TSQ+
Sbjct: 291 ALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPIEKITTAEAIRSLIGYYRTSQY 350
Query: 355 SYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVV 414
YAA+EKVE ISKVKG VL++GGS+ASFLMQAFTLTKRSF+NMSRDFGYYWLRLVIY+VV
Sbjct: 351 CYAAREKVEEISKVKGDVLESGGSRASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVV 410
Query: 415 TICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
T+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVE+MKV
Sbjct: 411 TVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEEMKV 459
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329638|ref|NP_173226.2| ABC transporter G family member 11 [Arabidopsis thaliana] gi|75330766|sp|Q8RXN0.1|AB11G_ARATH RecName: Full=ABC transporter G family member 11; Short=ABC transporter ABCG.11; Short=AtABCG11; AltName: Full=Protein CUTICULAR DEFECT AND ORGAN FUSION 1; AltName: Full=Protein DESPERADO; AltName: Full=Protein PERMEABLE LEAVES 1; AltName: Full=White-brown complex homolog protein 11; Short=AtWBC11 gi|19423992|gb|AAL87274.1| putative ABC transporter protein [Arabidopsis thaliana] gi|23297574|gb|AAN12898.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332191521|gb|AEE29642.1| ABC transporter G family member 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/461 (84%), Positives = 423/461 (91%), Gaps = 8/461 (1%)
Query: 11 MEIEASKP--------AGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844740|ref|XP_002890251.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297336093|gb|EFH66510.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/461 (84%), Positives = 423/461 (91%), Gaps = 8/461 (1%)
Query: 11 MEIEASKP--------AGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+A+LKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRASLKGSMKLRFEASDDPLEKITTAEAIRVLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.911 | 0.644 | 0.845 | 1.2e-208 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.873 | 0.631 | 0.593 | 2.5e-136 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.873 | 0.628 | 0.584 | 2.3e-135 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.828 | 0.607 | 0.552 | 8.9e-125 | |
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.818 | 0.557 | 0.420 | 2.8e-82 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.547 | 0.343 | 0.428 | 1.8e-64 | |
| MGI|MGI:1347061 | 657 | Abcg2 "ATP-binding cassette, s | 0.837 | 0.633 | 0.360 | 1.9e-60 | |
| RGD|631345 | 657 | Abcg2 "ATP-binding cassette, s | 0.824 | 0.624 | 0.358 | 5e-60 | |
| UNIPROTKB|F1PG82 | 658 | ABCG2 "Uncharacterized protein | 0.826 | 0.624 | 0.347 | 6.4e-60 | |
| UNIPROTKB|Q9UNQ0 | 655 | ABCG2 "ATP-binding cassette su | 0.770 | 0.584 | 0.383 | 1.7e-59 |
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1999 (708.7 bits), Expect = 1.2e-208, Sum P(2) = 1.2e-208
Identities = 390/461 (84%), Positives = 424/461 (91%)
Query: 11 MEIEASK-----PA---GNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVT 62
MEIEAS+ P G + VGGLSPLSE IW+EK TEF GDVSARLTW+DLTVMVT
Sbjct: 1 MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVT 60
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122
+ +GET NVLEGLTGYAEPG+LTALMGPSGSGKST+LDAL+SRLA+NAFLSGT+LLNG K
Sbjct: 61 MGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRK 120
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
TKLSFGTAAYVTQDDNLIGTLTVRETI YSAR+RLPDKM SEKR LVERTIIEMGLQDC
Sbjct: 121 TKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDC 180
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
ADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTSGLDSA+AFFVTQTLR LSR
Sbjct: 181 ADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR 240
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDH 302
DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+EFFAQAGFPCPALRNPSDH
Sbjct: 241 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDH 300
Query: 303 FLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
FLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+ L+D+Y TS + Y AK KV
Sbjct: 301 FLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKV 360
Query: 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY 422
E IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGYYWLRL+IY++VT+CIGTIY
Sbjct: 361 EEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIY 420
Query: 423 LNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
LNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 421 LNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461
|
|
| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
Identities = 264/445 (59%), Positives = 337/445 (75%)
Query: 50 ARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A L W+DLTV++ S G T +L+GL G+AEPG + A+MGPSGSGKSTLLD+L+ RLA
Sbjct: 22 AYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLAR 81
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA LRL + E
Sbjct: 82 NVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVND 141
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+VE TIIE+GLQDCAD VIGNWH RG+SGGER+RVS+ALEIL RP++LFLDEPTSGLDSA
Sbjct: 142 IVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSA 201
Query: 229 AAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+AFFV Q LR ++RDG RTV++SIHQPSSEVF LFD L+LLS G+TVYFGE+ A EFFA
Sbjct: 202 SAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFA 261
Query: 288 QAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEAIKNL 345
+AGFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL + T+E L
Sbjct: 262 EAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIR-ETPATSDPLMNLATSEIKARL 320
Query: 346 IDFYQTSQHSYAAKEKVEGISKVKGTV-LDAG-GSQASFLMQAFTLTKRSFVNMSRDFGY 403
++ Y+ S ++ +AK ++ ++ ++G ++ GS+A++ Q TLTKRSFVNM RD GY
Sbjct: 321 VENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGY 380
Query: 404 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
YW R+VIY+VV+ C+GTI+ +VG Y SILAR SC F+ GF+TFMSIGGFPSF+E+MKV
Sbjct: 381 YWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKV 440
Query: 464 SLLIFYPTAVAKFIKRGVINISSVI 488
FY ++ + V IS+ +
Sbjct: 441 ----FYKERLSGYYGVSVYIISNYV 461
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 259/443 (58%), Positives = 336/443 (75%)
Query: 50 ARLTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
A L W+DLTV++ S+G T +L+ L GYAEPG + A+MGPSGSGKSTLLD+L+ RLA
Sbjct: 23 AYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLAR 82
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
N ++G +LLNG K +L +G AYVTQ+D L+GTLTVRETI+YSA LRLP M E
Sbjct: 83 NVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSD 142
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+VE TI+E+GLQDC+D VIGNWH RG+SGGER+RVSIALEIL RP++LFLDEPTSGLDSA
Sbjct: 143 IVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSA 202
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+AFFV Q LR ++RDGRTVI+S+HQPSSEVF LFD L+LLS G++VYFGE +A EFFA+
Sbjct: 203 SAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVEFFAE 262
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEAIKNLI 346
+GFPCP RNPSDHFLRCINSDFD V ATLKGS +++ ET + DPL + T+ L+
Sbjct: 263 SGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ-ETPATSDPLMNLATSVIKARLV 321
Query: 347 DFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAFTLTKRSFVNMSRDFGYYW 405
+ Y+ S+++ +AK ++ +S ++G ++ GS+A++ Q TLT RSF+NM RD GYYW
Sbjct: 322 ENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMCRDVGYYW 381
Query: 406 LRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVSL 465
R++ Y+VV+I +GTI+ +VG Y SILAR SC F+ GF+TFMSIGGFPSF+E+MKV
Sbjct: 382 TRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKV-- 439
Query: 466 LIFYPTAVAKFIKRGVINISSVI 488
FY ++ + V +S+ I
Sbjct: 440 --FYKERLSGYYGVSVYILSNYI 460
|
|
| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 235/425 (55%), Positives = 315/425 (74%)
Query: 52 LTWKDLTVMV-TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
+ W+DLTV++ G T +L G+ G EP + A+MGPSGSGKSTLLDAL+ RLA N
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 111 FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
+SG +L+NG K +L FG AAYVTQ+D L+GTLTVRE+ISYSA LRLP K+ E +V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
E TI +MGL++C+D IGNWHLRGISGGE++R+SIALE+L +P LLFLDEPTSGLDSA+A
Sbjct: 130 EATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASA 189
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
FFV Q LR ++ G+TV++SIHQPS EVF LFD L LLSGG+TVYFGE +A +FF +AG
Sbjct: 190 FFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAG 249
Query: 291 FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLK---F------ETSD--DPLEKITTA 339
FPCP+ RNPSDHFLRC+NSDFD V A L S ++ F ET++ DPL+ I TA
Sbjct: 250 FPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTA 309
Query: 340 EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAFTLTKRSFVNMS 398
E L+ ++ S ++ A++ +++ I+ + G V + GSQ ++ Q LT+RSF+NMS
Sbjct: 310 EIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFINMS 369
Query: 399 RDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFV 458
RD GYYW+R+ +Y+V++IC+G+I+ NVG + ++++ +C F+ GF+TFMSIGGF SF+
Sbjct: 370 RDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQSFI 429
Query: 459 EDMKV 463
E+MKV
Sbjct: 430 EEMKV 434
|
|
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 175/416 (42%), Positives = 270/416 (64%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
A + WKDLTV + + V++ GYA PGT+T +MGP+ SGKSTLL AL+ RL +
Sbjct: 112 ASIAWKDLTVTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPS 171
Query: 110 AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
A + G + +NG K+ + +G+ +V ++ LIG+LTVRE + YSA L+LP + +KR++
Sbjct: 172 AKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFL--FQKRSV 229
Query: 170 VERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
VE I M L D A+ +IG + +++G+ GERRRVSIA E++MRP +LF+DEP LDS
Sbjct: 230 VEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSV 289
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+A + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FGET A + F+
Sbjct: 290 SALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 349
Query: 289 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDF 348
AGFPCP +++PSDHFLR IN+DFD++ A K + D + TA AI+ L
Sbjct: 350 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQD---DNGDFSAVNMDTAVAIRTLEAT 406
Query: 349 YQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 408
Y++S + + + + +++ +GT L + G +A + LT RS + MSR++ YYWLRL
Sbjct: 407 YKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSLLVMSREWKYYWLRL 465
Query: 409 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGGFPSFVEDMKV 463
++Y+++T+ IGT+Y +G +S+ R + A FVF F + + I G PS ++++K+
Sbjct: 466 ILYMILTLSIGTLYSGLGHSLSSVATRVA-AVFVFVSFASLLGIAGIPSLLKEIKI 520
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 122/285 (42%), Positives = 185/285 (64%)
Query: 37 KEKINTEFSGDVSARLTWKDLTVMVTLSN-GE----THNVLEGLTGYAEPGTLTALMGPS 91
K K + F + ++KD+ V ++ G+ + +L + G+ E GT+ A+MGPS
Sbjct: 101 KNKKRSTFKNRID--FSFKDINHYVQITEKGKKKKISKQILTNINGHIESGTIFAIMGPS 158
Query: 92 GSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--GTAAYVTQDDNLIGTLTVRETI 149
G+GK+TLLD L+ RL N SGT+ LNG+K+ + YVTQ D+L+ +LTVRET+
Sbjct: 159 GAGKTTLLDILAHRLNING--SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETL 216
Query: 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH--LRGISGGERRRVSIAL 207
++ A+L++P +P EK V+ I EMGL CADT++G +RGISGGERRRV+I++
Sbjct: 217 NFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISI 276
Query: 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267
E+L P ++ LDEPTSGLD++ +F+V L+ L++ GRT+I +IHQP S ++++FD L L
Sbjct: 277 ELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLL 336
Query: 268 LSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFD 312
L G T+Y+G+ + A E+F G+ C NP+D FL IN+ +
Sbjct: 337 LGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDLINTQVE 381
|
|
| MGI|MGI:1347061 Abcg2 "ATP-binding cassette, sub-family G (WHITE), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 157/435 (36%), Positives = 234/435 (53%)
Query: 40 INTEFSGDVSARLTWKDLTVMVTLSNG----ET--HNVLEGLTGYAEPGTLTALMGPSGS 93
+ T GDV L++ +T V + +G +T +L + G +PG L A++GP+G
Sbjct: 28 VRTLAEGDV---LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGG 83
Query: 94 GKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYS 152
GKS+LLD L++R LSG +L+NG F + YV QDD ++GTLTVRE + +S
Sbjct: 84 GKSSLLDVLAARKDPKG-LSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFS 142
Query: 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
A LRLP M EK + I E+GL+ AD+ +G +RGISGGER+R SI +E++
Sbjct: 143 AALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITD 202
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ GK
Sbjct: 203 PSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGK 262
Query: 273 TVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDP 332
V+ G A E+FA AG+ C NP+D FL IN D V + + +++P
Sbjct: 263 LVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAVMLN-REEQDNEANKTEEP 321
Query: 333 LEKITTAEAIKNLIDFYQTSQ---HSYAAKEKVEGISKVKGT-VLDAGGSQASFLMQAFT 388
+ I+NL +FY S + A +++ G + KGT SF Q
Sbjct: 322 SKG--EKPVIENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRW 379
Query: 389 LTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTF 448
+ +RSF N+ + +L++ V++ + IG IY ++ + R F+ F
Sbjct: 380 IARRSFKNLLGNPQASVAQLIVTVILGLIIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCF 439
Query: 449 MSIGGFPSFVEDMKV 463
S+ FV + K+
Sbjct: 440 SSVSAVELFVVEKKL 454
|
|
| RGD|631345 Abcg2 "ATP-binding cassette, subfamily G (WHITE), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 154/429 (35%), Positives = 232/429 (54%)
Query: 46 GDVSARLTWKDLTVMVTLSNG----ET--HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL 99
GDV L++ +T V + +G +T +L + G +PG L A++GP+G GKS+LL
Sbjct: 34 GDV---LSFHHITYRVKVKSGFLVRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLL 89
Query: 100 DALSSRLASNAFLSGTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP 158
D L++R LSG +L+NG +F ++ YV QDD ++GTLTVRE + +SA LRLP
Sbjct: 90 DVLAARKDPRG-LSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLP 148
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218
M EK + I E+GL AD+ +G RGISGGER+R SI +E++ P +LFL
Sbjct: 149 KAMKTHEKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFL 208
Query: 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
DEPT+GLDS+ A V L+ +S+ GRT+I SIHQP +F+LFD L LL+ GK ++ G
Sbjct: 209 DEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGP 268
Query: 279 TSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITT 338
A E+FA AG+ C NP+D FL IN D V +G + +++P ++
Sbjct: 269 AQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAVMLN-RGEQDHEANKTEEPSKR--E 325
Query: 339 AEAIKNLIDFYQTSQHSYAAKEKVEGI---SKVKGT-VLDAGGSQASFLMQAFTLTKRSF 394
I+NL +FY S K +++ + K KG+ SF Q + +RSF
Sbjct: 326 KPIIENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSF 385
Query: 395 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF 454
N+ + +L++ V++ + IG +Y + + R F+ F S+
Sbjct: 386 KNLLGNPQASVAQLIVTVILGLIIGALYFGLKNDPTGMQNRAGVFFFLTTNQCFTSVSAV 445
Query: 455 PSFVEDMKV 463
FV + K+
Sbjct: 446 ELFVVEKKL 454
|
|
| UNIPROTKB|F1PG82 ABCG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 149/429 (34%), Positives = 233/429 (54%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 66 ILTNINGVMRPG-LNAILGPTGGGKSSLLDVLAARKDPHG-LSGDVLINGAPRPANFKCN 123
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRLP M EK + + I ++GL AD+ +G
Sbjct: 124 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSHEKNERINKVIQQLGLDKVADSKVGT 183
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S GRT+I
Sbjct: 184 QFIRGVSGGERKRTSIGMELITDPAILFLDEPTTGLDSSTANAVLLLLKRMSEQGRTIIF 243
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ GK ++ G A FFA G+ C NP+D FL IN
Sbjct: 244 SIHQPRYSIFKLFDSLTLLAAGKLMFHGPAQEALGFFASVGYHCEPYNNPADFFLDVING 303
Query: 310 DFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV- 368
D V + + + + +++P ++ T I+ + +FY S KE+++ +SK
Sbjct: 304 DSSAVVLN-REDQEGEVKVTEEPSKRGTPF--IERIAEFYANSDFCRKTKEELDQLSKSQ 360
Query: 369 --KGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG 426
K + SF Q ++KRSF N+ + ++++ V++ + +G I+ ++
Sbjct: 361 KRKSSAFKEITYATSFCQQLKWISKRSFKNLLGNPQASIAQIIVTVILGLVLGAIFYDLK 420
Query: 427 TGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVSLLIFYPTAVAKFIKRGVINISS 486
I R F+ F S+ S VE + V +F + ++I G +SS
Sbjct: 421 NDSTGIQNRSGVLFFLTTNQCFSSV----SAVELLVVEKKLF----IHEYIS-GYYRVSS 471
Query: 487 VIFFRFFKE 495
F + +
Sbjct: 472 YFFGKLLSD 480
|
|
| UNIPROTKB|Q9UNQ0 ABCG2 "ATP-binding cassette sub-family G member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 154/402 (38%), Positives = 219/402 (54%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-T 129
+L + G +PG L A++GP+G GKS+LLD L++R + LSG +L+NG +F
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG-LSGDVLINGAPRPANFKCN 120
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ YV QDD ++GTLTVRE + +SA LRL M EK + R I E+GL AD+ +G
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+RG+SGGER+R SI +E++ P +LFLDEPT+GLDS+ A V L+ +S+ GRT+I
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIF 240
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 309
SIHQP +F+LFD L LL+ G+ ++ G A +F AG+ C A NP+D FL IN
Sbjct: 241 SIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIING 300
Query: 310 DFDKVKATLKGSMKLK--FETS--DDPL-EKITTAEAIKNLIDFYQTSQ---HSYAAKEK 361
D V + K E S D PL EK+ AE N FY+ ++ H + EK
Sbjct: 301 DSTAVALNREEDFKATEIIEPSKQDKPLIEKL--AEIYVNS-SFYKETKAELHQLSGGEK 357
Query: 362 VEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 421
K K TV SF Q ++KRSF N+ + ++++ VV+ + IG I
Sbjct: 358 -----KKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAI 412
Query: 422 YLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 463
Y + I R F+ F S+ FV + K+
Sbjct: 413 YFGLKNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKL 454
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RXN0 | AB11G_ARATH | No assigned EC number | 0.8438 | 0.9114 | 0.6443 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 497 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-102 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-79 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-74 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-73 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-66 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-63 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-55 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-49 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-46 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-41 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-34 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-29 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-29 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-27 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-27 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-26 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-26 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-25 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-25 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-25 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-25 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-24 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-24 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-24 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-24 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-24 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-24 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-23 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-23 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-23 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 9e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-22 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-22 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-22 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-21 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-21 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-21 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-20 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-20 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-20 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-20 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-19 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-19 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-19 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-19 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-18 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-17 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-17 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-17 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-17 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-17 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-16 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-16 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-16 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-16 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-16 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-16 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-16 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-16 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-16 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-15 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-14 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-14 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-14 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 8e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-14 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-13 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-13 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-13 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-12 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-12 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-12 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-12 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-12 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-11 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-11 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-11 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-11 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-11 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-11 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 8e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-10 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-10 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-09 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-09 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-09 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-09 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 7e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 9e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-08 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-06 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-05 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 7e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 7e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 9e-05 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-04 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 2e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-04 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 5e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-04 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 7e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-04 | |
| TIGR02322 | 179 | TIGR02322, phosphon_PhnN, phosphonate metabolism p | 8e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.003 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.003 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.003 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.003 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.004 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = e-102
Identities = 145/428 (33%), Positives = 220/428 (51%), Gaps = 34/428 (7%)
Query: 31 LSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGP 90
L+ + + + D S + L H +L+ ++G A+PG L A+MG
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKH-LLKNVSGVAKPGELLAVMGS 59
Query: 91 SGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA--AYVTQDDNLIGTLTVRET 148
SG+GK+TL++AL+ R SG++LLNG A AYV QDD I TLTVRE
Sbjct: 60 SGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN-WHLRGISGGERRRVSIAL 207
+ + A LR+P ++ EKR V+ + +GL+ CA+T IG ++G+SGGER+R++ A
Sbjct: 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179
Query: 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267
E+L P LLF DEPTSGLDS A+ V Q L+ L++ G+T+I +IHQPSSE+FELFD++ L
Sbjct: 180 ELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239
Query: 268 LSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFE 327
++ G+ Y G A FF+ G PCP NP+D +++ +
Sbjct: 240 MAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL-------------------- 279
Query: 328 TSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG------GSQAS 381
+ P + + E I+ + D + S S G ++ G AS
Sbjct: 280 -AVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNAS 338
Query: 382 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASF 441
+ Q + L KRS++++ RD +RL+ ++ I IG IYL G +
Sbjct: 339 WWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GA 395
Query: 442 VFGFVTFM 449
+F F+T M
Sbjct: 396 LFLFLTNM 403
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 3e-79
Identities = 108/232 (46%), Positives = 142/232 (61%), Gaps = 41/232 (17%)
Query: 49 SARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107
L++++LTV V S ++ +L+ ++G A+PG LTA+MGPSG+GKSTLL+AL+ R
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 108 SNAFLSGTILLNGHKTKL-SFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
+ +SG +L+NG SF YV QDD L TLTVRET+ ++A
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA------------ 107
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
LRG+SGGER+RVSIALE++ P LLFLDEPTSGL
Sbjct: 108 -------------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
DS++A V LR L+ GRT+I SIHQPSSE+FELFD+L LLS G+ +YFG
Sbjct: 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 2e-74
Identities = 102/212 (48%), Positives = 138/212 (65%), Gaps = 12/212 (5%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-----HKTKL 125
+L ++ + E G + A++G SGSGK+TLLDA+S R+ SG IL NG + +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
AYV QDD L+ LTVRET++Y+A LRLP K + ++ VE ++ L+D A T
Sbjct: 82 CV---AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE----DVLLRDLALT 134
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
IG ++GISGGERRRVSIA+++L P++L LDEPTSGLDS A + TL L+R R
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI +IHQP S++F LFDR+ LLS G+ VY G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 5e-73
Identities = 148/398 (37%), Positives = 216/398 (54%), Gaps = 28/398 (7%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL 125
+ +L G+TG A PG + A++GPSGSGKSTLL+AL+ R+ N F +GTIL N K TK
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF-TGTILANNRKPTKQ 137
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
+VTQDD L LTVRET+ + + LRLP + EK + E I E+GL C +T
Sbjct: 138 ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+IGN +RGISGGER+RVSIA E+L+ P LL LDEPTSGLD+ AA+ + TL L++ G+
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
T++ S+HQPSS V+++FD + +LS G+ ++FG+ S A +F GF NP+D L
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLD 317
Query: 306 CINS--DFDKVKATLKGSMKLKFETSDDPL--EKITTAEAIKNLIDFYQTSQHSYAAKEK 361
N D V K ++K S + L K+ A + + S + KE
Sbjct: 318 LANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEH 377
Query: 362 VEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 421
+ +Q S L+Q +L +R + + LR+ + + G +
Sbjct: 378 RSSDR----ISISTWFNQFSILLQR-SLKER------KHESFNTLRVFQVIAAALLAGLM 426
Query: 422 YLNVGTGYNSILARGSCASFVFGFVTFMSI--GGFPSF 457
+ + + + + R G + F+SI G FPSF
Sbjct: 427 WWH--SDFRDVQDR-------LGLLFFISIFWGVFPSF 455
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-66
Identities = 129/421 (30%), Positives = 202/421 (47%), Gaps = 44/421 (10%)
Query: 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
W++LT V + E +L + G+ +PGTLTALMG SG+GK+TLL+ L+ R+ +
Sbjct: 762 WRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 114 GTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
G L+NG SF + YV Q D + T TVRE++ +SA LR P + SEK VE
Sbjct: 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-FLDEPTSGLDSAAAF 231
I + ++ AD V+G G++ +R+R++I +E++ +P+LL FLDEPTSGLDS A+
Sbjct: 881 VIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSAAF----EFF 286
+ + +R L+ G+ ++ +IHQPS+ +FE FDRL LL GG+TVYFG+ +F
Sbjct: 940 SICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYF 999
Query: 287 AQAGFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNL 345
+ G P CP NP++ L I + A A ++
Sbjct: 1000 EKHGAPKCPEDANPAEWMLEVIGAA--------------------------PGAHANQDY 1033
Query: 346 IDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQ---ASFLMQAFTLTKRSFVNMSR 399
+ ++ S A K +++ + D AS Q + R+F R
Sbjct: 1034 HEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWR 1093
Query: 400 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSIL-ARGSCASFVFGFVTFMSIGGFPSFV 458
Y + + + + + IG + VGT + + F + P FV
Sbjct: 1094 TPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQ-QYLPPFV 1152
Query: 459 E 459
Sbjct: 1153 A 1153
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 5e-63
Identities = 93/229 (40%), Positives = 129/229 (56%), Gaps = 41/229 (17%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
LTWK+L V G +L ++GY +PGTLTALMG SG+GK+TLLD L+ R +
Sbjct: 3 VLTWKNLNYTV-PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-G 60
Query: 111 FLSGTILLNGHKTKLSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
++G IL+NG +F + YV Q D LTVRE + +SA LR
Sbjct: 61 VITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------------- 107
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
G+S +R+R++I +E+ +P +LFLDEPTSGLDS A
Sbjct: 108 ------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL-SGGKTVYFG 277
A+ + + L+ L+ G+ ++ +IHQPS+ +FE FDRL LL GGKTVYFG
Sbjct: 144 AYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 6e-55
Identities = 82/236 (34%), Positives = 121/236 (51%), Gaps = 17/236 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+T G L+G++ EPG + L+GP+G+GK+TLL L+ L SG IL+ G
Sbjct: 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLG 66
Query: 121 HKTKLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ YV Q+ +L LTVRE + + ARL + E +E +
Sbjct: 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLEL 123
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
GL+D A+ + R +SGG ++R+SIAL +L P LL LDEPTSGLD + + +
Sbjct: 124 FGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 237 LRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
LR L+++G T++ S H E EL DR+ +L+ GK + G E F G
Sbjct: 179 LRELAKEGGVTILLSTHI-LEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-49
Identities = 106/402 (26%), Positives = 173/402 (43%), Gaps = 29/402 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHK----TKL 125
+L+ + G +PG LT ++G GSG STLL ++S + + G I +G K
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-------DKMPWSEKRTLVERTIIEMG 178
G Y + D LTV ET+ ++AR + P + +++ V G
Sbjct: 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YG 193
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L +T +GN +RG+SGGER+RVSIA L ++ D T GLDSA A + +R
Sbjct: 194 LSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL---EFIR 250
Query: 239 CLSRDGR----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP 294
L T + +I+Q S + +ELFD++ +L G +YFG A ++F + GF CP
Sbjct: 251 ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310
Query: 295 ALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNL---IDFYQT 351
+ +D FL + S + G K T + + L ID Y
Sbjct: 311 DRQTTAD-FLTSLTS--PAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLD 367
Query: 352 SQHSYAAKEKVE--GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLV 409
KE ++K + SF MQ R+F+ M + + +
Sbjct: 368 RCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVF 427
Query: 410 IYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI 451
+++ + + +++ N+ + +RG F F F S+
Sbjct: 428 GNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSL 469
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-46
Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 36/215 (16%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
+L+ +G +PG + ++G GSG STLL AL++R N + G I NG K
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 128 ----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
G YV+++D TLTVRET+ ++ R +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------- 111
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
GN +RGISGGER+RVSIA ++ R +L D T GLDS+ A + + +R ++
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
T S++Q S E+++LFD++ +L G+ +Y+G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 3e-41
Identities = 86/210 (40%), Positives = 134/210 (63%), Gaps = 4/210 (1%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KTKLSFG- 128
+L +TG PG LTALMG SG+GK+TL+D L+ R + ++ G I ++G K + +F
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFAR 953
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
+ Y Q+D +TVRE++ YSA LRLP ++ EK V+ + + L + D ++G
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG 1013
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+ G+S +R+R++IA+E++ P ++F+DEPTSGLD+ AA V +T+R GRTV+
Sbjct: 1014 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1073
Query: 249 ASIHQPSSEVFELFDRLYLLS-GGKTVYFG 277
+IHQPS ++FE FD L L+ GG+ +Y G
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103
|
Length = 1470 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-39
Identities = 92/280 (32%), Positives = 151/280 (53%), Gaps = 41/280 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFG 128
+L+ +G +P +T L+GP SGK+TLL AL+ +L + +SG I NG++ +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLR---------------------LPDK------- 160
T+AY++Q+D +G +TV+ET+ +SAR + P+
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 161 ---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217
M + + + T+ +GL C DT++G+ +RGISGG+++RV+ I+ + LF
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGR----TVIASIHQPSSEVFELFDRLYLLSGGKT 273
+DE ++GLDS+ + Q ++CL + TV+ S+ QP+ E F+LFD + LLS G+
Sbjct: 360 MDEISTGLDSSTTY---QIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416
Query: 274 VYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDK 313
VY G EFF GF CP + +D FL+ + S D+
Sbjct: 417 VYQGPRDHILEFFESCGFKCPERKGTAD-FLQEVTSKKDQ 455
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-35
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---- 120
L+ ++ + G ++GP+GSGKSTLL L+ L SG +L++G
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLT 66
Query: 121 -HKTKLSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
K V Q+ D+ TV E +++ +P E VE + +G
Sbjct: 67 KLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVG 123
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L+ D L SGG+++RV+IA + M P +L LDEPT+GLD A + + L+
Sbjct: 124 LEGLRDRSPF--TL---SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLK 178
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L +G+T+I H + EL DR+ +L GK
Sbjct: 179 KLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 9e-34
Identities = 78/248 (31%), Positives = 110/248 (44%), Gaps = 21/248 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ L+ G +T ++GP+GSGKSTLL L+ L SG +LL+G S
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIA-SLSPK 72
Query: 131 ------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK-RTLVERTIIEMGLQDCA 183
AYV Q + LTV E + L S++ +VE + +GL+ A
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA 132
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D + +SGGER+RV IA + +L LDEPTS LD A V + LR L+R+
Sbjct: 133 DRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF--EFFAQA-GFPCPALRNP 299
G TV+ +H + D L LL GK V G E + G + +P
Sbjct: 188 KGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDADVIEDP 246
Query: 300 SDHFLRCI 307
I
Sbjct: 247 DSGKPVVI 254
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-32
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
T ++ L+ G + L+G +G+GK+T L L+ L SGT +NG+ +
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDR 70
Query: 128 GTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Y Q D L LTVRE + + ARL+ +P SE + VE + +GL D A
Sbjct: 71 KAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKA 127
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ +SGG +R++S+A+ ++ P +L LDEPTSGLD A+ + + + R
Sbjct: 128 NKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RK 181
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
GR++I + H E L DR+ ++S GK G
Sbjct: 182 GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 2e-32
Identities = 70/219 (31%), Positives = 105/219 (47%), Gaps = 23/219 (10%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK- 122
GE L+G++ E G A++GPSGSGKSTLL+ L SG + ++G
Sbjct: 12 GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDI 68
Query: 123 TKLSFG--------TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
+KLS +V Q NL+ LT E + L +P E+R E +
Sbjct: 69 SKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELL 125
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
+GL D + +SGG+++RV+IA + P+++ DEPT LDS V
Sbjct: 126 ERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 235 QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ LR L+++ G T++ H P E+ E DR+ L GK
Sbjct: 181 ELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-30
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 26/235 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTIL 117
++ L+ ++ E G L+GP+GSGKSTLL L N L SG +L
Sbjct: 9 LSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLL------NGLLKPTSGEVL 62
Query: 118 LNGHKTKLSFGTAA------YVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
++G T V Q+ D+ + TV + +++ +P E V
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERV 119
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ +GL++ D +SGG+++RV+IA + M P +L LDEPT+GLD
Sbjct: 120 AEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174
Query: 231 FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + L+ L + G+T+I H V E DR+ +L GK + G+ + F
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-30
Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 26/230 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
+DLTV + H VLE ++ +PG A++GP+G+GKSTLL A+ L SG
Sbjct: 3 EDLTV--SYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAI---LGLLKPTSG 54
Query: 115 TILLNGHKTKLSFGTAAYVTQDDNLIGT--LTVRETISYSARLRLPDKMPW-----SEKR 167
+I + G + YV Q ++ ++VR+ + +
Sbjct: 55 SIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVL-MGLYG---HKGLFRRLSKADK 110
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
V+ + +GL + AD IG +SGG+++RV +A ++ P LL LDEP +G+D
Sbjct: 111 AKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + LR L R+G T++ H V E FDR+ LL+ V G
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRTV-VASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-30
Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 58/205 (28%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
L+ ++ + G + AL+GP+GSGKSTLL A++ L SG IL++G
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGK------ 61
Query: 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
D + +R I Y
Sbjct: 62 --------DIAKLPLEELRRRIGY------------------------------------ 77
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
+ +SGG+R+RV++A +L+ P LL LDEPTSGLD A+ + + LR L+ +GRTV
Sbjct: 78 ----VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTV 133
Query: 248 IASIHQPSSEVFELFDRLYLLSGGK 272
I H P DR+ +L GK
Sbjct: 134 IIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 6e-30
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 43/218 (19%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+++ G VL+ L+ E G + ++GP+G+GKSTLL L+ L SG ILL+G
Sbjct: 5 LSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GL--LKPSSGEILLDG 60
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
S S + + K V + + +GL
Sbjct: 61 KDLA-------------------------SLSPKEL-------ARKIAYVPQALELLGLA 88
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
AD +SGGER+RV +A + P +L LDEPTS LD A + + LR L
Sbjct: 89 HLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 241 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+R+ G+TV+ +H + DR+ LL G+ V G
Sbjct: 144 ARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 3e-29
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 52/209 (24%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
L+ ++ E G + L+GP+G+GK+TL+ + L + SG I + G K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEP 68
Query: 128 GTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
Y+ ++ +L LTVRE + S
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKLS------------------------------- 97
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
GG ++R+++A +L P LL LDEPTSGLD + + LR L ++
Sbjct: 98 -------------GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G+T++ S H E L DR+ +L+ G+
Sbjct: 145 GKTILLSSHIL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-29
Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 27/229 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+T S G VL+G+ G + A++GPSGSGKSTLL + L + SG +L++G
Sbjct: 6 LTKSFGGRT-VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDG 61
Query: 121 HK-TKLS----------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
+ LS G + Q L +LTV E +++ LR ++ E R +
Sbjct: 62 EDISGLSEAELYRLRRRMG---MLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREI 116
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + +GL+ D +SGG ++RV++A + + P LL DEPT+GLD A
Sbjct: 117 VLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171
Query: 230 AFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + +R L ++ G T I H F + DR+ +L GK V G
Sbjct: 172 SGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-28
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-- 121
GE L+ + E G A++GPSGSGKSTLL+ L L SG +L+NG
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPT--SGEVLINGKDL 69
Query: 122 -------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
KL +V Q+ NL+ LTV E + + ++ E +
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELL 126
Query: 175 IEMGLQDCADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
+GL+D +SGG+++RV+IA ++ P+++ DEPT LDS A V
Sbjct: 127 EVLGLED-----RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 234 TQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ LR L+++ G+T+I H P E+ + DR+ L GK
Sbjct: 182 LELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 8e-28
Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
++LTV + N VLE ++ E G +TAL+GP+G+GKSTLL A+ L + SG
Sbjct: 8 ENLTV--SYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SG 59
Query: 115 TILLNGHKTK--LSFGTAAYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEKRTLV 170
I + G + YV Q ++ + +TV++ + L K W +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL----LGRYGKKGWFRRLNKK 115
Query: 171 ERTIIE-----MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
++ ++ +G++D D IG L SGG+++RV +A + P LL LDEP +G+
Sbjct: 116 DKEKVDEALERVGMEDLRDRQIG--EL---SGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
D A + L+ L ++G+TV+ H V FDR+ L+ + G
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLNRHL-IASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-27
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127
L+G++ PG + L+GP+G+GK+TL+ L++ + SGTI ++G
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Y+ Q+ + TVRE + Y A L+ +P E + V+ + + L D A
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK 127
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
IG +SGG RRRV IA ++ P +L +DEPT+GLD L L D R
Sbjct: 128 IG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RI 181
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI S H +V L +++ +L+ GK V+ G
Sbjct: 182 VILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-27
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 31/228 (13%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILL 118
++ + G L+ L+ EPG AL+GPSG GK+TLL ++ R S G IL+
Sbjct: 6 LSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS-----GEILI 59
Query: 119 NG--------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
+G + + V QD L LTV E I++ +LR +P +E R V
Sbjct: 60 DGRDVTGVPPERRNI-----GMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARV 111
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ +GL+ + +SGG+++RV++A + P LL LDEP S LD+
Sbjct: 112 RELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 231 FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + L+ L R+ G T I H E L DR+ +++ G+ V G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 4e-27
Identities = 65/213 (30%), Positives = 90/213 (42%), Gaps = 57/213 (26%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--- 121
G VL+ ++ +PG A++GPSGSGKSTLL L RL SG IL++G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYDP--TSGEILIDGVDLR 67
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ AYV QD L T+RE I
Sbjct: 68 DLDLESLRKNIAYVPQDPFLFSG-TIRENI------------------------------ 96
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+SGG+R+R++IA +L P +L LDE TS LD + + LR
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L G+TVI H+ S+ DR+ +L G+
Sbjct: 142 L-AKGKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-26
Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 21/191 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-- 128
VL+GL AE G + AL+G +G+GKSTLL L+ L SG +L++G S
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 129 -----TAAYVTQD-DNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQD 181
V QD D+ + V + +++ L L + +E V + +G
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE----AEVERRVREALTAVGASG 119
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+ H +SGGE++RV+IA + MRP +L LDEPT+GLD A + LR L
Sbjct: 120 LRERPT---HC--LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 242 RDGRTVIASIH 252
+G TV+ S H
Sbjct: 175 AEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-26
Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
VLE + E G A++GPSG GKSTLL ++ L SG +LL+G
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA-GLEKPT--SGEVLLDGRPVTGPG 71
Query: 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
YV Q+D L+ LTV + ++ LR +E R + + +GL D
Sbjct: 72 PDIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK-- 126
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT------QTLRCLS 241
+ +SGG R+RV+IA + RP+LL LDEP LD+ +T + LR
Sbjct: 127 ---YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA-----LTREELQDELLRLWE 178
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGG 271
+TV+ H E L DR+ +LS
Sbjct: 179 ETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-26
Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILL 118
+ + G+ H L+ ++ G +TAL+GPSG GKSTLL L + L A G +LL
Sbjct: 6 LNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64
Query: 119 NGHKTKLSFGTA-------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
+G V Q N ++ + ++Y RL K
Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG-------IKLKEEL 116
Query: 172 RTIIEMGLQDCA--DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+E L+ A D V H G+SGG+++R+ +A + P +L LDEPTS LD +
Sbjct: 117 DERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS 176
Query: 230 AFFVTQTLRCLSRDGRTVIAS--IHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ + + L ++ VI + + Q + DR L G+ V FG T
Sbjct: 177 TAKIEELIAELKKEYTIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 36/222 (16%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL---- 125
L+ ++ PG + L+GP+G+GK+TL + +S L SG++L +G T L
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHE 71
Query: 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM----PWSEKRTLVERT 173
+F Q L LTV E + +A+ R + E+R ER
Sbjct: 72 IARLGIGRTF-------QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERA 124
Query: 174 --IIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
++E +GL D AD G +S G++RR+ IA + P+LL LDEP +GL+
Sbjct: 125 EELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ + +R L G TV+ H V L DR+ +L G+
Sbjct: 180 EELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGR 220
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 67/220 (30%), Positives = 98/220 (44%), Gaps = 29/220 (13%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+++ L ++ PG AL+GPSG+GKSTLL+ L G+I +NG
Sbjct: 327 VSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL-GFVDPT--EGSIAVNG 383
Query: 121 HKT-----KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
A+V Q L T+ E I RL PD + +
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLFAG-TIAENI----RLARPDA-----SDAEIREALE 433
Query: 176 EMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
GL + DT IG G+SGG+ +R+++A L LL LDEPT+ LD+
Sbjct: 434 RAGLDEFVAALPQGLDTPIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268
V + LR L++ GRTV+ H+ + L DR+ +L
Sbjct: 493 TEAEVLEALRALAQ-GRTVLLVTHRL--ALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-25
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 27/221 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ S + +L+ L+ G + AL G +G+GK+TL L+ + + SG+ILLNG
Sbjct: 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNG 61
Query: 121 HKTKLS--FGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
K + YV QD D + T +VRE + L L + E + ++
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREEL----LLGLKEL---DAGNEQAETVLKDL 114
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L + H +SGG+++R++IA +L LL DEPTSGLD V + +
Sbjct: 115 DLYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 238 RCLSRDGRTVIASIHQPSSEVFELF----DRLYLLSGGKTV 274
R L+ G+ VI H +E DR+ LL+ G V
Sbjct: 170 RELAAQGKAVIVITHD-----YEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 4e-25
Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 35/219 (15%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNG 120
G LE ++ E G AL+GPSG GKSTLL ++ SG +L++G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA------GLERPTSGEVLVDG 65
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
YV Q D L+ LTV + ++ L+ +P +E R E + +GL
Sbjct: 66 EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLS 122
Query: 181 DCADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT--- 236
+ +SGG R+RV++A + + P +L LDEP S LD+ T
Sbjct: 123 GFEN------AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA-------LTREQ 169
Query: 237 -----LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
L G+TV+ H E L DR+ +LS
Sbjct: 170 LQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-25
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
G++ +L G++ G + AL+G +G+GK+TLL + L SG+I +G T
Sbjct: 11 GKSQ-ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITG 66
Query: 125 L-SFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT------LVERT 173
L A YV + + LTV E + A R K +R L ER
Sbjct: 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKER- 125
Query: 174 IIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+SGGE++ ++IA ++ RP+LL LDEP+ GL
Sbjct: 126 ----------------RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+ + +R L +G T++ + Q + E+ DR Y+L G+ V G +
Sbjct: 170 EIFEAIRELRDEGVTILL-VEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 20/226 (8%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT S G+ +L+G+ G + A++G SGSGKSTLL + L G IL++G
Sbjct: 14 VTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLI---LGLLRPDKGEILIDG 69
Query: 121 HKTKLSFGTAAY--------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
Y + Q L +LTV E +++ LR K+P S R LV
Sbjct: 70 EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLM 127
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAF 231
+ +GL + + +SGG R+RV++A I + P LLFLDEPTSGLD +A
Sbjct: 128 KLELVGL----RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G TVI H S + + DR+ +L+ GK + G
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 72/216 (33%), Positives = 109/216 (50%), Gaps = 21/216 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KTKL 125
+++G+ A PG+LT L+GP+GSGKSTLL L+ L +A GT+ L G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRA 72
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS----EKRTLVERTIIEMGLQD 181
A V QD + LTVR+ ++ R+P + W+ +V+R + L
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
AD + +SGGER+RV +A + P+LL LDEPT+ LD A +R L+
Sbjct: 130 LADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G TV+A++H + D + +L GG+ V G
Sbjct: 185 ATGVTVVAALHDLNLAA-SYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 13/211 (6%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
L+ ++ E G + L+GP+G+GK+T + + + + SG +L +G ++
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAA 68
Query: 128 GTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Y+ ++ L + V + + Y A+L+ + E R ++ + + L + A+
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR 125
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +S G +++V ++ P LL LDEP SGLD + +R L+R G+T
Sbjct: 126 V-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI S HQ V EL DR+ LL+ G+ V +G
Sbjct: 181 VILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-----------HKTKLSFGTA 130
G L AL+GPSG+GKSTLL ++ +A G I LNG K+ F
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLAVRDRKVGF--- 81
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCADTVIG 188
V Q L +TV + I++ ++R K SE R VE + + L+ AD
Sbjct: 82 --VFQHYALFPHMTVADNIAFGLKVR---KERPSEAEIRARVEELLRLVQLEGLADR--- 133
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTV 247
+ +SGG+R+RV++A + + P++L LDEP LD+ + + LR R G T
Sbjct: 134 --YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285
+ H E EL DR+ +L+ G+ G ++
Sbjct: 192 VFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 37/242 (15%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ + L+ ++ PG AL+GPSG+GKSTLL L+ + SG++L++G
Sbjct: 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDG 62
Query: 121 HK-TKLSFGTA--------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
KL G A + Q NLI L+V E + RL + W L
Sbjct: 63 TDINKLK-GKALRQLRRQIGMIFQQFNLIERLSVLENVLSG---RLGRRSTWRSLFGLFP 118
Query: 172 RTIIEMGLQDCADTVIGNWHLRGI-----------SGGERRRVSIALEILMRPRLLFLDE 220
+ + L + V G+ SGG+++RV+IA ++ +P+L+ DE
Sbjct: 119 KEEKQRALA-ALERV-------GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
P + LD A++ V L+ ++R +G TVI S+HQ E DR+ L G+ V+ G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDGPP 229
Query: 280 SA 281
+
Sbjct: 230 AE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ + L L + G LTAL+G SG+GKSTLL+ L LA G I +NG
Sbjct: 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNG 382
Query: 121 HK-TKLS----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM--PWSEKRTLVERT 173
LS ++V+Q+ + T+RE I AR D+ ++ L+E
Sbjct: 383 IDLRDLSPEAWRKQISWVSQN-PYLFAGTIRENILL-ARPDASDEEIIAALDQAGLLEFV 440
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
GL DTVIG G+SGG+ +R+++A +L LL LDEPT+ LD+ +
Sbjct: 441 PKPDGL----DTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
Q L+ L++ +TV+ H+ E DR+ +L G+ V
Sbjct: 496 LQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLV 533
|
Length = 559 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 6e-24
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
VL+ ++ + + G + +GP+G+GK+T + + + + SG I +G + +
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNI 68
Query: 128 GTAAYV---TQDDNLIGTLTVRETISYSARL-RLPDKMPWSEKRTLVERTIIEMGLQDCA 183
+ + LT RE + ARL + K ++ + +GL+D A
Sbjct: 69 EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDSA 120
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + L G ++R+ IAL +L P LL LDEPT+GLD + + + L
Sbjct: 121 KKKVKGFSL-----GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
G TV+ S H SE+ ++ DR+ +++ GK +
Sbjct: 176 GITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-23
Identities = 69/209 (33%), Positives = 96/209 (45%), Gaps = 28/209 (13%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---- 123
+L+ L E G + A++G SGSGKSTLL+ + L F SG + LNG +T
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEK--FDSGQVYLNGQETPPLN 66
Query: 124 ---KLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTII 175
F Y+ Q+ LI TV E L L K+ EKR + +
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEEN------LDLGLKYKKLSKKEKREKKKEALE 120
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
++GL I +SGGE++RV++A IL P L+ DEPT LD V
Sbjct: 121 KVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDR 264
L L+ +G+T+I H P EV + DR
Sbjct: 176 LLLELNDEGKTIIIVTHDP--EVAKQADR 202
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-23
Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 54/199 (27%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA------AYVT 134
G + AL+GPSGSGKSTLL ++ L SG+IL++G T L V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIA-GLEEPD--SGSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
QD L LTV E I+ G
Sbjct: 83 QDFALFPHLTVLENIAL------------------------------------------G 100
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQ 253
+SGG+++RV++A + M P +L LDEPTS LD V L+ L ++ G TV+ H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 254 PSSEVFELFDRLYLLSGGK 272
E L DR+ +L GK
Sbjct: 161 L-DEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-23
Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------------HKTKLS 126
+T + G SG+GKSTLL ++ + GTI+LNG + K+
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQQRKI- 77
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
V Q L L VRE +++ + + E R V+ + +GL
Sbjct: 78 ----GLVFQQYALFPHLNVRENLAFGLKRKRN-----REDRISVDELLDLLGLDH----- 123
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 245
+ N + +SGGE++RV++A + +P LL LDEP S LD A + L+ + ++
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
VI H SE L DR+ ++ G+ Y G
Sbjct: 184 PVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 5e-23
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------V 133
G + A++GPSG+GKSTLL+ ++ SG IL+NG + +
Sbjct: 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHT---ASPPAERPVSML 76
Query: 134 TQDDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Q++NL LTV + I S L+L +E+R VE ++GL + G
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLN-----AEQREKVEAAAAQVGLAGFLKRLPGE-- 129
Query: 192 LRGISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 249
+SGG+R+RV++A L+R + +L LDEP S LD A + + L + T++
Sbjct: 130 ---LSGGQRQRVALA-RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM 185
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
H P + + DR+ L G+ G T E +
Sbjct: 186 VTHHP-EDAARIADRVVFLDNGRIAAQGSTQ---ELLSGKA 222
|
Length = 231 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 9e-23
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
L +DL + G + GL+ G L GP+GSGK+TLL ++ L
Sbjct: 2 MLEGEDLACV---RGGRV--LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-- 54
Query: 111 FLSGTILLNGHKTKLS--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
+GTI L+G Y+ + + LTV E + + A +
Sbjct: 55 -AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-------GGEEL 106
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDS 227
+ + +GL A G +S G++RRV++A L + RP + LDEPT+ LD+
Sbjct: 107 DIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRP-IWILDEPTAALDA 160
Query: 228 AA-AFFVTQTLRCLSRDGRTVIASIHQP 254
AA A F L++ G VIA+ H P
Sbjct: 161 AAVALFAELIRAHLAQGG-IVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 9e-23
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129
+ ++ AE G +T L+G +G+GK+TLL +++ L + SG + ++G T
Sbjct: 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSF 72
Query: 130 A----AYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCAD 184
+ + L LT RE + Y ARL L K + R + L + D
Sbjct: 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKE--IKARI--AELSKRLQLLEYLD 128
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
+G S G +++V+IA ++ P +L LDEPTSGLD ++ L +G
Sbjct: 129 RRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R VI S H EV L DR+ +L G+ V G
Sbjct: 184 RAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-22
Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
L+ ++ PG AL+GP+G+GKSTL +L +RL G I + GH + + A
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQ--EGQISVAGHDLRRAPRAA 72
Query: 131 ----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
V Q L L+VR+ + Y A L + +E R + + +GL + AD
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADDK 129
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ R ++GG RRRV IA +L RP LL LDEPT GLD A+ +T +R L+RD
Sbjct: 130 V-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARD 181
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 13/202 (6%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
LE ++ G L ++GPSG GK+TLL+ ++ + + G+I LNG + +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V Q++ L+ L V + +++ +LR +K ++R + + + +GL+ I W
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA---QRREIAHQMLALVGLEGAEHKYI--W 131
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 249
L SGG R+RV IA + + P+LL LDEP LD+ + + L L ++ G+ V+
Sbjct: 132 QL---SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 250 SIHQPSSEVFELFDRLYLLSGG 271
H +F L RL +LS G
Sbjct: 189 ITHDIEEALF-LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 7e-22
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT------- 123
++G++ +PG +T L+GP+G+GK+T L L+ L +A G ++G
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEA 76
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
+ G +V+ L LT RE + Y A L + E +E +G+++
Sbjct: 77 RRRLG---FVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELL 130
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D +G G S G R++V+IA ++ P +L LDEPT+GLD A + + +R L
Sbjct: 131 DRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G+ ++ S H EV L DR+ +L G+ VY G
Sbjct: 186 GKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 9e-22
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-------KTK 124
+ G++ G + L+GP+G+GK+T + L++ L SG + GH + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
G V QD ++ LT E + ARL +P +E+R ++ + +GL + AD
Sbjct: 73 RRIG---IVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAAD 126
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 243
++ + SGG RRR+ IA ++ RP +LFLDEPT GLD V + + L +
Sbjct: 127 RLVKTY-----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G T++ + H E +L DR+ ++ G+ + G
Sbjct: 182 GMTILLTTHY-MEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-21
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK 124
+VL+G+ + G + ++GPSGSGKSTLL ++ L SGTI+++G K K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEE--PDSGTIIIDGLKLTDDK 68
Query: 125 LSFGT----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ V Q NL LTV E I+ + M +E + ++GL
Sbjct: 69 KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLA 126
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
D AD +SGG+++RV+IA + M P+++ DEPTS LD V ++ L
Sbjct: 127 DKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181
Query: 241 SRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGK 272
+ +G T++ H+ F E+ DR+ + G+
Sbjct: 182 AEEGMTMVVVTHEMG---FAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-21
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L+G+ + G +L+G SG GKSTLL+ +S LA SG ++L G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPT--SGGVILEGKQITEPGPDRM 57
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
V Q+ +L+ LTVRE I+ + LPD + SE+R +VE I +GL + AD G
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPD-LSKSERRAIVEEHIALVGLTEAADKRPGQ-- 114
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIAS 250
+SGG ++RV+IA + +RP++L LDEP LD+ + ++ TV+
Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGE 278
H + L DR+ +L+ G G+
Sbjct: 172 THDVDEALL-LSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 4e-21
Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 60 MVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT 115
M+T+ N T VL+ ++ G +T+++GP+G+GKSTLL ++ SRL SG
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLK--KDSGE 57
Query: 116 ILLNGH-----KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--DKMPWSEKRT 168
I ++G +K + + Q++++ LTVR+ + + R P E R
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRR 114
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
++ I + L+D +D +L +SGG+R+R IA+ + + LDEP + LD
Sbjct: 115 IINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 229 AAFFVTQTLRCLSRD-GRTVIASIH 252
+ + + LR L+ + G+T++ +H
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 4e-21
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 24/214 (11%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-------KTK 124
++G+ G + +GP+G+GK+T + L++ L SGT + G+ K +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 125 LSFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
S G Y + D++L G RE + RL +P E E + L + A
Sbjct: 66 RSIGIVPQYASVDEDLTG----RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAA 118
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D +G SGG RRR+ IA ++ +P +LFLDEPT+GLD + +R L +
Sbjct: 119 DRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G T++ + H E +L DR+ ++ G+ + G
Sbjct: 174 GVTILLTTHY-MEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 64/255 (25%)
Query: 60 MVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL-- 112
+ L N G VL+ + E G L+GPSG GKSTLL + A L
Sbjct: 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI-------AGLEE 54
Query: 113 --SGTILLNGHK-TKLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
SG IL++G T L A V Q+ L +TV E I++ +LR +P +E
Sbjct: 55 PTSGEILIDGRDVTDLP--PEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAE 109
Query: 166 KRTLVERTIIE----MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
+++ + E +GL+ + N +SGG+R+RV++A ++ +P++ LDEP
Sbjct: 110 ----IDKRVKEVAKLLGLEH-----LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP 160
Query: 222 TSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQ--------PSSEVFE---LFDRLYLLS 269
S LD R R+ I +H+ + + E L DR+ +++
Sbjct: 161 LSNLD------------AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN 208
Query: 270 GGKTVYFGETSAAFE 284
G+ G +E
Sbjct: 209 DGRIQQVGTPLELYE 223
|
Length = 338 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 9e-21
Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 37/223 (16%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+G++ PG + A++GP+G+GKSTLL ALS L+ + SG + LNG
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72
Query: 131 -----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE-RTIIE--MGLQDC 182
A + Q+ +L TV+E + +P R E I + D
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGR-------IPHRSGREPEEDERIAAQALAATDL 125
Query: 183 ADTVIGNWHLRG-----ISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAF 231
+ L G +SGGE++RV +A + R LFLDEPTS LD A
Sbjct: 126 S-------GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ R L+R+G V+A +H + + DR+ LL G+ +
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAA-QYADRIVLLHQGRVI 220
|
Length = 259 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 70/221 (31%), Positives = 98/221 (44%), Gaps = 27/221 (12%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
+ VLE L+ PG A++G SGSGKSTLL L G ILL+G
Sbjct: 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLN 538
Query: 125 LSFGTAA------YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT----- 173
A+ YV QD L ++RE I L P+ E +
Sbjct: 539 D-IDLASLRRQVGYVLQDPFLFSG-SIRENI----ALGNPE-ATDEEIIEAAQLAGAHEF 591
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
I + + DT +G +SGG+R+R+++A +L +P++L LDE TS LD +
Sbjct: 592 IENLPMG--YDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
Q L + GRTVI H+ S DR+ +L GK V
Sbjct: 649 LQNLLQI-LQGRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686
|
Length = 709 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 47/227 (20%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKTK- 124
+L+GL+ PG AL+G SG GKST++ +L R F SG ILL+G +
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLER-----FYDPTSGEILLDGVDIRD 69
Query: 125 --LSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---- 176
L + V+Q+ L T+ E I Y T E + E
Sbjct: 70 LNLRWLRSQIGLVSQEPVLFDG-TIAENIRYGK-----------PDATDEE--VEEAAKK 115
Query: 177 -------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
M L D DT++G RG +SGG+++R++IA +L P++L LDE TS LD+
Sbjct: 116 ANIHDFIMSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA 172
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ V + L + GRT I H+ S+ D + +L G+ V
Sbjct: 173 ESEKLVQEALDRAMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVV 216
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 38/250 (15%)
Query: 60 MVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
M+ + N G+ VL+G++ E G + ++GPSGSGKSTLL L+ L SG
Sbjct: 2 MIEIKNLSKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN-GLEE--PDSG 57
Query: 115 TILLNGHKTKLSFGTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR- 167
+I ++G V Q NL LTV E ++ + K+ +E R
Sbjct: 58 SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK--KLSKAEARE 115
Query: 168 ---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224
L+E+ +GL D AD + +SGG+++RV+IA + M P+++ DEPTS
Sbjct: 116 KALELLEK----VGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGKTVYFGETSAA 282
LD V ++ L+ +G T+I H+ F E+ DR+ + GK + E
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMG---FAREVADRVIFMDQGKII---EEGPP 220
Query: 283 FEFFAQAGFP 292
EFF
Sbjct: 221 EEFFDNPKSE 230
|
Length = 240 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-20
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ + L ++ + G L GPSG+GK+TLL L L + G + + G
Sbjct: 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAG 63
Query: 121 HKT-----------KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
+ G V QD L+ TV E ++ +R + +
Sbjct: 64 EDVNRLRGRQLPLLRRRIGV---VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR--- 117
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + ++GL+ AD +SGGE++RV+IA I+ P LL DEPT LD
Sbjct: 118 VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPS 255
+ + L+ L++ G TVI + H S
Sbjct: 173 SERILDLLKRLNKRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 3e-20
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 29/241 (12%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L K+L+V + G + L+ ++ + G L+G SGSGKSTL A+ L
Sbjct: 2 LEVKNLSV-SFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL-GLLKPT- 58
Query: 112 LSGTILLNGHK-TKLS-------FGTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKM 161
SG+I+ +G KLS V QD +L +T+ E I+ R+
Sbjct: 59 -SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK 117
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLR----GISGGERRRVSIALEILMRPRLLF 217
+ K ++ + +G+ + L +SGG+R+RV+IA + + P+LL
Sbjct: 118 KEARKEAVLL---LLVGVGLPEE------VLNRYPHELSGGQRQRVAIARALALNPKLLI 168
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276
DEPTS LD + + L+ L + G T++ H V ++ DR+ ++ GK V
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYAGKIVEE 227
Query: 277 G 277
G
Sbjct: 228 G 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 5e-20
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 96 STLLDALSSRLASNAFLSGTILLNGH-KTKLSFGTA-----AYVTQDDNLIGTLTVRETI 149
STLL ++ L SGTILL+G T LS V QD L LTVRE +
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209
+ R E E + +GL D D +SGG+++RV+IA +
Sbjct: 58 FFGLRD--------KEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARAL 105
Query: 210 LMRPRLLFLDEPTS 223
L +P+LL LDEPT+
Sbjct: 106 LKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 30/230 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGT 129
L ++ E G ++G SGSGKSTL L SG+ILL+G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLL---AGLEKPSSGSILLDGKPLAPKKRAK 78
Query: 130 AAY-----VTQDDNLIGTL----TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
A Y V QD +L TV +S R P + S++R + + ++GL
Sbjct: 79 AFYRPVQMVFQDP--YSSLNPRRTVGRILSEPLR---PHGLSKSQQR--IAELLDQVGLP 131
Query: 181 DCADTVIGNWHLRGI---SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
++ R SGG+R+R++IA ++ P+LL LDEPTS LD + + L
Sbjct: 132 P-------SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
L ++ I + V + DR+ ++ G+ V G T +
Sbjct: 185 LELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 5e-20
Identities = 78/226 (34%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
G+ VL ++ G AL+GPSGSGKSTL++ L R SG IL++GH +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVD--SGRILIDGHDVR 67
Query: 125 LSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT----- 173
+ A V+QD L TV E I+Y R VE
Sbjct: 68 -DYTLASLRRQIGLVSQDVFLFND-TVAENIAYGRP---------GATREEVEEAARAAN 116
Query: 174 ---IIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
I M L + DTVIG RG+ SGG+R+R++IA +L P +L LDE TS LD+
Sbjct: 117 AHEFI-MELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ V L L ++ RT H+ S+ E DR+ +L GK V
Sbjct: 173 SERLVQAALERLMKN-RTTFVIAHRLST--IENADRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 6e-20
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 27/225 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------HK 122
VL+ L+ E G L AL+G SG GK+TLL A++ A L+G I + HK
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
L A + Q+ L L V + +++ R + KMP ++ V + +GL D
Sbjct: 79 RGL-----ALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDA 130
Query: 183 ADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
A HL +SGG ++R++IA I + P +L LDEP S LD+ + + + L
Sbjct: 131 AA------HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184
Query: 242 RD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ T++ H + L D+ ++ G+ GE A ++
Sbjct: 185 EELPELTILCVTHD-QDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 7e-20
Identities = 68/240 (28%), Positives = 98/240 (40%), Gaps = 72/240 (30%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--------- 121
+L+ ++ PG + A++GP+G+GKSTLL ALS L+ + SG + LNG
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73
Query: 122 ----------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
+ LSF TV E + + P R +
Sbjct: 74 LARRRAVLPQHSSLSFP--------------FTVEEVV----AMGR---APHGLSRAEDD 112
Query: 172 RTIIE-MGLQDCADTVIGNWHLRG-----ISGGERRRVSIA------LEILMRPRLLFLD 219
+ + D A HL G +SGGE++RV +A E PR L LD
Sbjct: 113 ALVAAALAQVDLA-------HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 220 EPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH---QPSSEVFELF-DRLYLLSGGKTV 274
EPTS LD A V + R L+ + G VI +H + + DR+ LL G+ V
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVLLHQGRLV 220
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 9e-20
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS--FGTAAYVTQ 135
E G ++GP+GSGKS LL+ ++ + + SG ILLNG T L +YV Q
Sbjct: 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQ 78
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL--- 192
+ L +TV + I+Y + R DK +ER ++E+ ++G HL
Sbjct: 79 NYALFPHMTVYKNIAYGLKKRKVDKKE-------IERKVLEIA------EMLGIDHLLNR 125
Query: 193 --RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGGE++RV+IA +++ P++L LDEP S LD + + L+ + ++ +
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ E + L D++ ++ GK + G+ F+
Sbjct: 186 VTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-19
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 27/226 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKLSFGTAAYVTQDDN 138
G+L AL+GPSGSGKSTLL ++ + SG I LNG + +V Q
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYA 82
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198
L LTVR+ I++ +R K ++ + VE + + L +G+ + +SGG
Sbjct: 83 LFKHLTVRDNIAFGLEIRKHPK---AKIKARVEELLELVQL-----EGLGDRYPNQLSGG 134
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258
+R+RV++A + + P++L LDEP LD+ + LR L + + E
Sbjct: 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304
E+ DR+ ++S GK Q G P +P++ F+
Sbjct: 195 MEVADRIVVMSNGKIE-------------QIGSPDEVYDHPANPFV 227
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKTKLSF 127
++ ++ + G L+GPSG GK+TLL ++ F SG ILL+G +
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA------GFEQPSSGEILLDG---EDIT 70
Query: 128 GTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
V Q L +TV E +++ L++ K+ +E + VE + +GL+
Sbjct: 71 DVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG 128
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
AD +SGG+++RV++A ++ P++L LDEP S LD+ + + L+ L
Sbjct: 129 FADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183
Query: 242 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
R+ G T + H E + DR+ +++ G+
Sbjct: 184 RELGITFVYVTH-DQEEALAMSDRIAVMNDGR 214
|
Length = 352 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-19
Identities = 69/196 (35%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125
VL+ ++ G A++GPSGSGKST+L RL + SG+IL++G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTIL-----RLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 126 -SFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDC 182
S A V QD L T+ I Y R D ++ + K + I M D
Sbjct: 71 DSLRRAIGVVPQDTVLFND-TIGYNIRY-GRPDATDEEVIEAAKAAQIHDKI--MRFPDG 126
Query: 183 ADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DT++G RG +SGGE++RV+IA IL P +L LDE TS LD+ + LR +
Sbjct: 127 YDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV 183
Query: 241 SRDGRTVIASIHQPSS 256
S+ GRT I H+ S+
Sbjct: 184 SK-GRTTIVIAHRLST 198
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA-------- 130
G + A++GPSG+GKSTLL +L+ + SG IL NG + TKL G
Sbjct: 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLK-GKELRKLRRDI 83
Query: 131 AYVTQDDNLIGTLTVRETI-----SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
+ Q NL+ L+V E + Y++ R + E + + +G+ D A
Sbjct: 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ 143
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDG 244
+SGG+++RV+IA ++ +P+++ DEP + LD +A V L+ ++ DG
Sbjct: 144 RAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG 198
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
TVI ++HQ + DR+ L G+ V+ G S
Sbjct: 199 ITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-19
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 21/211 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSGTILLNGHKTKL-- 125
VL + PG + L GPSGSGK+TLL L S + + G L + +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
+ G Y+ Q NL+G LT R+ + + L+ + + E R + +GL D
Sbjct: 80 LRRNIG---YIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDH 134
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D ++ +SGG+++RV+IA ++ RP+L+ DEPT+ LDS + V + ++ L+R
Sbjct: 135 LD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 243 D-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ G T++ H + ++ DR+ + GK
Sbjct: 190 EQGCTILIVTHDN--RILDVADRIVHMEDGK 218
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL------------S 126
PG + L+GP+G+GK+TL + ++ + SGT++ G T L +
Sbjct: 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIART 84
Query: 127 FGTAA---YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER--TIIE-MGLQ 180
F +T +N+ R +S K E+R ER ++E +GL
Sbjct: 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK----EEREARERARELLEFVGLG 140
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ AD GN +S G++RR+ IA + +P+LL LDEP +GL+ + + +R L
Sbjct: 141 ELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G I I V L DR+ +L+ G+
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227
|
Length = 250 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 28/225 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKTKLSF 127
L+G+ AE G + AL+GP+G+GKSTL L N L SG +L+ G K
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLF------LHFNGILKPTSGEVLIKGEPIKYDK 70
Query: 128 G-------TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
T V Q+ D+ + TV E +++ L L EKR V+ + +G+
Sbjct: 71 KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP-LNLGLSKEEVEKR--VKEALKAVGM 127
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ + HL SGG+++RV+IA + M+P ++ LDEPTSGLD A + + L
Sbjct: 128 EGFENKP--PHHL---SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYD 182
Query: 240 LSRDGRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETSAAF 283
L+++G T+I S H ++ ++ D++Y++S GK + G F
Sbjct: 183 LNKEGITIIISTHD--VDLVPVYADKVYVMSDGKIIKEGTPKEVF 225
|
Length = 275 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-19
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL----ASNAFLSGTIL--LNGHK 122
L+ + PG A++GPSG+GKSTLL ++ RL + + L GT + L G K
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKK 73
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETI-----SYSARLR-LPDKMPWSEKR---TLVERT 173
+ + Q NLI LTV E + Y R L + +K + +ER
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER- 132
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
+GL D A +SGG+++RV+IA + +P L+ DEP + LD + V
Sbjct: 133 ---VGLADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 234 TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
L+ +++ DG TVI ++HQ + DR+ L G+ V+ G S
Sbjct: 185 MDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ + L ++ + G L GPSG+GKSTLL + G IL+NG
Sbjct: 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNG 63
Query: 121 H------KTKLSF-----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
H ++ F G V QD L+ TV E ++ R+ P E R
Sbjct: 64 HDLSRLKGREIPFLRRQIG---VVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRR 117
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + +GL+ A + +SGGE++RV+IA I+ +P +L DEPT LD
Sbjct: 118 VSEVLDLVGLKHKARALPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
Query: 230 AFFVTQTLRCLSRDGRTVIASIH 252
++ + + ++R G TV+ + H
Sbjct: 173 SWEIMRLFEEINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 3e-19
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
G+ L G++ E G + AL+G +G+GK+TLL + + SG I+ +G T
Sbjct: 14 GKIQ-ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITG 69
Query: 125 L-SFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-- 177
L A AYV + + LTV E + DK + +E + E+
Sbjct: 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLL-LGAYARRDK---EAQERDLEE-VYELFP 124
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-- 235
L++ + G +SGGE++ ++IA ++ RP+LL LDEP+ GL A V +
Sbjct: 125 RLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIF 176
Query: 236 -TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
++ L ++G I + Q + E+ DR Y+L G+ V G +
Sbjct: 177 EAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
|
Length = 237 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------ 121
T N L+ ++ A+ G + +GP+G+GKST + ++ L + SG++ + G
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNP 70
Query: 122 -KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ + + G Y+ + + L + VRE + + A + M + VE I +GL+
Sbjct: 71 KEVQRNIG---YLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLR 124
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
IG +S G R+RV +A ++ P++L LDEPT+GLD + ++ +
Sbjct: 125 PEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+D +T+I S H EV + DR+ +++ GK V
Sbjct: 180 GKD-KTIILSTHI-MQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 4e-19
Identities = 68/192 (35%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFG- 128
VL+G++ PG A++GPSGSGKSTLL L+ L L G + L+G + L
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVPVSSLDQDE 406
Query: 129 ---TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---MGLQDC 182
+ QD +L T TVRE + RL PD E +ER + L D
Sbjct: 407 VRRRVSVCAQDAHLFDT-TVRENL----RLARPDATD-EELWAALERVGLADWLRALPDG 460
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
DTV+G +SGGER+R+++A +L +L LDEPT LD+ A + + L
Sbjct: 461 LDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAAL- 518
Query: 243 DGRTVIASIHQP 254
GRTV+ H
Sbjct: 519 SGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 8e-19
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ S VL+ ++ EPG A++GPSGSGKSTL+ L RL SG IL++G
Sbjct: 334 VSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDP--TSGEILIDG 390
Query: 121 HKTKLSFGTA-----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+ + V+QD L T+RE I+ +++ + K I
Sbjct: 391 IDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFI- 448
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
L D DT++G +SGG+R+R++IA +L P +L LDE TS LD+ +
Sbjct: 449 -ANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
L+ L GRT + H+ S+ + DR+ +L G+ V G
Sbjct: 507 ALKKL-LKGRTTLIIAHRLSTI--KNADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-18
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KT 123
VL+ ++ PG +TAL+GPSGSGKST++ L + G +LL+G +
Sbjct: 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEH 83
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
K + V Q+ L ++++ I+Y + + + + I L
Sbjct: 84 KYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFI-SELASGY 140
Query: 184 DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
DT +G +G +SGG+++RV+IA ++ P++L LDE TS LD+ + V Q L
Sbjct: 141 DTEVGE---KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP 197
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
RTV+ H+ S+ E D++ +L GG+
Sbjct: 198 ER-RTVLVIAHRLST--VERADQILVLDGGR 225
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-18
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 43/229 (18%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHK 122
+ L+ ++ G A++G GSGKSTLL +L + + SG++LL+G
Sbjct: 13 PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLL-----KLLAGLYKPTSGSVLLDGTD 67
Query: 123 TKL--------SFGTAAYVTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
+ + G YV QD L GTL R+ I+ A P ++ ++
Sbjct: 68 IRQLDPADLRRNIG---YVPQDVTLFYGTL--RDNITLGA--------PLADDERILR-- 112
Query: 174 IIEM-GLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
E+ G+ D D IG RG+SGG+R+ V++A +L P +L LDEPTS +
Sbjct: 113 AAELAGVTDFVNKHPNGLDLQIGE-RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
D + + + LR L D +T+I H+PS + +L DR+ ++ G+ V
Sbjct: 172 DMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-18
Identities = 65/211 (30%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 62 TLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTI 116
T+ GE ++L+G+ + G A++GPSGSGKSTLL L A L SG +
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVL-------AGLDDPSSGEV 67
Query: 117 LLNGH---------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEK 166
L G + L +V Q +LI LT E ++ LR +
Sbjct: 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA 127
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+ L+E +GL H +SGGE++RV++A RP +LF DEPT L
Sbjct: 128 KALLEA----VGLGKRLT------HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL 177
Query: 226 DSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255
D A + L L+R+ G T++ H P
Sbjct: 178 DRATGDKIADLLFALNRERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-18
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 23/223 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V S E VL+ + +PG A++GP+G+GK+TL++ L R G IL++G
Sbjct: 8 VNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLIN-LLMRFYDPQ--KGQILIDG 64
Query: 121 -------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
K+ S V QD L T+ E I R D+ E
Sbjct: 65 IDIRDISRKSLRS--MIGVVLQDTFLFSG-TIMENIRLG-RPNATDEE-VIEAAKEAGAH 119
Query: 174 IIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
M L + DTV+G G +S GER+ ++IA +L P++L LDE TS +D+
Sbjct: 120 DFIMKLPNGYDTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ + L L GRT I H+ S+ D++ +L GK +
Sbjct: 177 LIQEALEKL-MKGRTSIIIAHRLSTIKNA--DKILVLDDGKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-18
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-------TAAYV 133
G L+G SGSGKSTL L+ L + SG+I+ +G L+ G V
Sbjct: 316 EGETLGLVGESGSGKSTLARILA-GLLPPS--SGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 134 TQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
QD +L +TV + ++ LR+ +E+R V + +GL + +
Sbjct: 373 FQDPYSSLNPRMTVGDILAE--PLRIHGGGSGAERRARVAELLELVGL----PPEFLDRY 426
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+R+RV+IA + + P+LL LDEP S LD + V L+ L + I
Sbjct: 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285
+ V + DR+ ++ G+ V G T FE
Sbjct: 487 SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 3e-18
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
A+ G L L+GP+G+GK+TLL A+ L GT+ + G + YV Q
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAI---LGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHE 59
Query: 139 LIGT--LTVRETISYSAR------LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
++V T+ S R LR P ++ R + R +GL + AD +G
Sbjct: 60 FAWDFPISVAHTV-MSGRTGHIGWLRRPCVADFAAVRDALRR----VGLTELADRPVGE- 113
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGG+R+RV +A + RP +L LDEP +GLD +T+ L+ G ++ +
Sbjct: 114 ----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 251 IHQPSSEVFELFDRLYLLSG 270
H + + DR+ LL+G
Sbjct: 170 THDLAQAM-ATCDRVVLLNG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-18
Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KTKLSFGTAAYVTQ 135
G +T L+G +GSGKSTLL L + G ILL+ +K AY+ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQ 92
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPW--------SEKRTLVERTIIEMGLQDCADTVI 187
+TVRE ++ + PW + R VE I +GL+ A ++
Sbjct: 93 QLPAAEGMTVRELVAIG-------RYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV 145
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRT 246
+ +SGGER+R IA+ + R L LDEPTS LD A V + LS++ G T
Sbjct: 146 DS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
VIA +H + D L L GG+ + G +
Sbjct: 201 VIAVLHDINMAA-RYCDYLVALRGGEMIAQGTPAE 234
|
Length = 265 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-18
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 22/203 (10%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT---QDDN 138
G +TA++GPSGSGKSTLL+ ++ SG +L+NG + V+ Q++N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 139 LIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
L LTV + + S L+L +E R +E + +GL + G +S
Sbjct: 81 LFAHLTVEQNVGLGLSPGLKLT-----AEDRQAIEVALARVGLAGLEKRLPGE-----LS 130
Query: 197 GGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
GGER+RV++A +L+R + +L LDEP + LD A + + L + TV+ HQP
Sbjct: 131 GGERQRVALA-RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 255 SSEVFELFDRLYLLSGGKTVYFG 277
+ L R+ L G+ G
Sbjct: 190 -EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 4e-18
Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA- 130
L L+ G + L+GP+G+GKSTLL ++ L SG+I G L +A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAG--QPLEAWSAA 65
Query: 131 ------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
AY++Q + V + ++ L PDK + + +GL D
Sbjct: 66 ELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLG 121
Query: 185 TVIGNWHLRGISGGERRRVSIALEIL-----MRP--RLLFLDEPTSGLDSAAAFFVTQTL 237
+ +SGGE +RV +A +L + P +LL LDEP + LD A + + L
Sbjct: 122 RSVNQ-----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
L + G V+ S H + DR++LL GK + G
Sbjct: 177 SELCQQGIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-18
Identities = 58/212 (27%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---HK 122
G VL ++ EPG A++GPSGSGKSTL + L SG + L+G +
Sbjct: 12 GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQ 68
Query: 123 TKLS-FG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ G Y+ QDD L ++ E I
Sbjct: 69 WDPNELGDHVGYLPQDDELFSG-SIAENI------------------------------- 96
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+SGG+R+R+ +A + PR+L LDEP S LD + Q + L
Sbjct: 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G T I H+P E DR+ +L G+
Sbjct: 143 KAAGATRIVIAHRP--ETLASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 20/243 (8%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLS 113
++LTV ++G + ++ EPG + ++G SGSGKSTL AL L S
Sbjct: 9 ENLTVEFA-TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 114 GTILLNGH---------KTKLSFGTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMP 162
G ++L+G KL A + QD +L +T+ + I + RL K
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH--GKGS 125
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222
+E R + ++GL D + H +SGG R+RV IA+ + ++P+LL DEPT
Sbjct: 126 RAEARKRAVELLEQVGLPD-PERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPT 182
Query: 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+ LD + L+ L R+ G V+ H V EL DR+ ++ G+ V G T
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTEE 241
Query: 282 AFE 284
Sbjct: 242 ILS 244
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 34/248 (13%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL-- 112
++++ + T L+ ++ G + ++G SG+GKSTLL RL + L
Sbjct: 5 ENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLIN--LLER 57
Query: 113 --SGTILLNGHKTKLSFGTA--------AYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
SG++ ++G + Q NL+ + TV E +++ L +P
Sbjct: 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVP 114
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222
+E + V + +GL D AD +SGG+++RV+IA + P++L DE T
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETS 280
S LD + + L+ ++R+ G T++ H+ EV + DR+ +L G+ V E
Sbjct: 170 SALDPETTQSILELLKDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGRLV---EEG 224
Query: 281 AAFEFFAQ 288
E FA
Sbjct: 225 TVSEVFAN 232
|
Length = 339 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 41/228 (17%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHK 122
G+ L+ ++ PG A++G GSGKSTLL +L + G++LL+G
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL-----KLLLGLYQPTEGSVLLDGVD 528
Query: 123 TKL--------SFGTAAYVTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
+ + G YV QD L GTL R+ I+ A P+++ ++ R
Sbjct: 529 IRQIDPADLRRNIG---YVPQDPRLFYGTL--RDNIALGA--------PYADDEEIL-RA 574
Query: 174 IIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
G+ + D IG R +SGG+R+ V++A +L P +L LDEPTS +D
Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ + L+ G+T++ H+ S + +L DR+ ++ G+ V
Sbjct: 634 NRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L ++L S GE + EGL+ G + GP+G GK+TLL L+ L
Sbjct: 1 LAARNLAC----SRGER-MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--- 52
Query: 112 LSGTILLNG---HKTKLSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR 167
SG + NG + + Y+ L L+ E + + A + +
Sbjct: 53 DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH-------GGAQ 105
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+E + +GL D +S G++RR+++A L R L LDEPT+ LD
Sbjct: 106 RTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQ--PSSEVFEL 261
A + LR G V+ + HQ E EL
Sbjct: 161 AGVALLAGLLRAHLARGGIVLLTTHQDLGLVEAREL 196
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 1e-17
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 28/231 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ + G++H +L G++ G +T ++G +G GK+TLL L L SG+I L+G
Sbjct: 6 LNVYYGQSH-ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDG 61
Query: 121 HK-TKLS-FGTA----AYVTQDDNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVER 172
TKL A AYV Q + LTV E + +A R K+P +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--------DE 113
Query: 173 TIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
I E+ L++ G+ +SGG++++++IA ++ RP+LL LDEPT G+ +
Sbjct: 114 -IYELFPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII 167
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+ + +R L +G I + Q EL DR Y++ G+ V G
Sbjct: 168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-17
Identities = 58/203 (28%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT + L+G+ G L+GPSG+GKSTLL + SGTI +NG
Sbjct: 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNG 62
Query: 121 ------HKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
+ G V QD L+ V E ++++ L + P E R
Sbjct: 63 QDVSDLRGRAIPYLRRKIGV---VFQDFRLLPDRNVYENVAFA--LEVTGVPP-REIRKR 116
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + +GL + +SGGE++RV+IA I+ P +L DEPT LD
Sbjct: 117 VPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 230 AFFVTQTLRCLSRDGRTVIASIH 252
+ + L+ +++ G TV+ + H
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 24/216 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKLSF--GTAAYVTQ 135
G + +G +G+GKST L L+ L SG + +NG + + + + Q
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVMGQ 105
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
L L +++ L+L ++P E ++ + L+ W +R +
Sbjct: 106 KLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEG-----FLKWPVRKL 157
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF----FVTQTLRCLSRDGRTVIASI 251
S G+R R +A +L P++LFLDEPT GLD A F+ + TV+ +
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE---ERQATVLLTT 214
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
H ++ L DR+ L+ G+ V+ G + E F
Sbjct: 215 HI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-17
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YV 133
+ G + AL+G +G+GKSTL+ L + SG I ++G + ++ A V
Sbjct: 28 KKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMV 84
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q L+ TLTV E I + + R ++ GL D + +
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD---- 140
Query: 194 GISGGERRRVSIALEILMR-PRLLFLDEPTSGL--DSAAAFFVTQTLRCLSRDGRTVIAS 250
+S GE++RV I L+ L R RLL LDEPT+ L A F + LR L+ +G+T+I
Sbjct: 141 -LSVGEQQRVEI-LKALYRGARLLILDEPTAVLTPQEADELF--EILRRLAAEGKTIIFI 196
Query: 251 IHQPSSEVFELFDRLYLLSGGKTV 274
H+ EV + DR+ +L GK V
Sbjct: 197 THK-LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-17
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
+ DL+V G+T VL+G+ G+L L+GP+G+GK+TLL A++ L A
Sbjct: 4 IDVSDLSV----EFGDT-TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA- 57
Query: 112 LSGTILLNGHKTKLSFGTA-----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK 166
GT+L+ G + A A V QD +L VR+ + W+E
Sbjct: 58 --GTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTET 115
Query: 167 -RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
R VER + G+ AD + + +SGGER+RV +A + +L LDEPT+ L
Sbjct: 116 DRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIH 252
D + +R L DG+T +A+IH
Sbjct: 171 DINHQVRTLELVRRLVDDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 32/243 (13%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL-- 112
K+++ + + G+ L+ ++ G + ++G SG+GKSTL+ ++ L
Sbjct: 5 KNVSKVFGDTGGKVT-ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN-------GLER 56
Query: 113 --SGTILLNGHK-TKLSFGTA--------AYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
SG++L++G T LS G + Q NL+ + TV E ++ + +
Sbjct: 57 PTSGSVLVDGTDLTLLS-GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI---AGV 112
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
P +E V + +GL+D AD +SGG+++RV IA + P++L DE
Sbjct: 113 PKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEA 167
Query: 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
TS LD + LR ++R+ G T++ H+ V + DR+ ++ G+ V G
Sbjct: 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTVE 226
Query: 281 AAF 283
F
Sbjct: 227 EVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 23/249 (9%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---AS 108
L K+L+V G ++G++ + G + ++G SGSGKS L A+ L +
Sbjct: 2 LEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPKPN 59
Query: 109 NAFLSGTILLNGH-KTKLS-------FGTA-AYVTQD--DNLIGTLTVRETISYSARLRL 157
+ G IL +G LS G A + QD +L +T+ + I+ RL
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG 119
Query: 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLL 216
+ E + + +G+ D + + ++ H +SGG R+RV IA+ + + P+LL
Sbjct: 120 K-GLSKKEAKERAIELLELVGIPD-PERRLKSYPH--ELSGGMRQRVMIAMALALNPKLL 175
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
DEPT+ LD + L+ L R+ G +I H V E+ DR+ ++ G+ V
Sbjct: 176 IADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVE 234
Query: 276 FGETSAAFE 284
G F+
Sbjct: 235 EGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-17
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 62 TLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121
T+ G +L L+ G +TAL+GP+G GKSTLL +RL SGT+ L
Sbjct: 9 TVGYGTK-RILNDLSLSLPTGKITALIGPNGCGKSTLLKCF-ARL--LTPQSGTVFLGDK 64
Query: 122 ----------KTKLSFGTAAYVTQDDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTL 169
+L+ ++T + +TVRE ++Y S L L ++ +E
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEG-----ITVRELVAYGRSPWLSLWGRLS-AEDNAR 118
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + + + + AD + + +SGG+R+R +A+ + ++ LDEPT+ LD
Sbjct: 119 VNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173
Query: 230 AFFVTQTLRCLSRDGRTVIASIH---QPSSEVFELFDRLYLLSGGKTV 274
+ + +R L+ G+TV+ +H Q S D L +L+ G +
Sbjct: 174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGHVM 217
|
Length = 255 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 4e-17
Identities = 74/256 (28%), Positives = 111/256 (43%), Gaps = 35/256 (13%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----- 123
H L + G + AL+GPSGSGKSTLL LS + + I L G
Sbjct: 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76
Query: 124 -----KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
+ S Y+ Q NL+ L+V E + A P W + R +
Sbjct: 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP---FWRTCFSWFTREQKQRA 133
Query: 179 LQDCADTVIGNWH-----LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
LQ A T +G H + +SGG+++RV+IA ++ + +++ DEP + LD +A V
Sbjct: 134 LQ--ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 234 TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 292
TLR +++ DG TV+ ++HQ +R+ L G Y G +S F+
Sbjct: 192 MDTLRDINQNDGITVVVTLHQ-VDYALRYCERIVALRQGHVFYDG-SSQQFD-------- 241
Query: 293 CPALRNPSDHFLRCIN 308
DH R IN
Sbjct: 242 ----NERFDHLYRSIN 253
|
Length = 262 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 42/212 (19%)
Query: 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------------HKTKLSFGTA 130
TA+ G SGSGK+TL+ ++ + G I+LNG K ++
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPEKRRIG---- 78
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
YV Q+ L L+VR + Y + P + S +R +IE+ +G
Sbjct: 79 -YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER------VIEL---------LGIG 122
Query: 191 HL-----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
HL +SGGE++RV+I +L PRLL +DEP + LD + + L L +
Sbjct: 123 HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG 182
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
I + EV L DR+ +L G+ G
Sbjct: 183 IPILYVSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 5e-17
Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 32/210 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA--------A 131
PG + AL+G +G+GKSTL+ LS + SG IL++G ++F + A
Sbjct: 32 RPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG--KPVAFSSPRDALAAGIA 86
Query: 132 YVTQDDNLIGTLTVRETISYSARL-RLPDK----MPWSEKRTLVERTIIEMGLQDCADTV 186
V Q+ +L+ L+V E I L R P + + R + +GL DT+
Sbjct: 87 TVHQELSLVPNLSVAENI----FLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL 142
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFFVTQTLRCLSRDG 244
+G+ +S +R+ V IA + R+L LDEPT+ L F +R L G
Sbjct: 143 VGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF--DLIRRLKAQG 195
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+I H+ EVFE+ DR+ +L G+ V
Sbjct: 196 VAIIYISHRL-DEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 63/247 (25%), Positives = 95/247 (38%), Gaps = 49/247 (19%)
Query: 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI 116
L + G L+ G +TAL GPSGSGK++L++ ++ + G I
Sbjct: 2 LELNFRQRLGNFA--LDANFTLPARG-ITALFGPSGSGKTSLINMIAGLTRPD---EGRI 55
Query: 117 LLNG--------------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
LNG K ++ YV QD L TVR + Y
Sbjct: 56 ELNGRVLVDAEKGIFLPPEKRRI-----GYVFQDARLFPHYTVRGNLRY---------GM 101
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLF 217
W R ++ + +G++ HL +SGGE++RV+I +L P LL
Sbjct: 102 WKSMRAQFDQLVALLGIE----------HLLDRYPGTLSGGEKQRVAIGRALLTAPELLL 151
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+DEP + LD + L L + I + EV L DR+ +L GK G
Sbjct: 152 MDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
Query: 278 ETSAAFE 284
+
Sbjct: 212 PLEEVWG 218
|
Length = 352 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-17
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-------H 121
V++GL+ + + G L+GP+G+GK+T L L +A G+I L G
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRAR 76
Query: 122 KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQ 180
+ G V Q DNL TVRE + R + + R LV ++E L+
Sbjct: 77 HARQRVGV---VPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVP-PLLEFAKLE 129
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ AD +G +SGG +RR+++A ++ P +L LDEPT+GLD A + + LR L
Sbjct: 130 NKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
G+T++ + H E L DRL ++ G+ + G A E
Sbjct: 185 LARGKTILLTTHF-MEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSF-- 127
L + A + A++GP+G+GKSTL + L SG++L+ G TK +
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75
Query: 128 --GTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTL--VERTIIEMGLQDC 182
V Q+ D+ I + TV + I++ P + E+ V + +GL++
Sbjct: 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFG-----PINLGLDEETVAHRVSSALHMLGLEEL 130
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS- 241
D V HL SGGE++RV+IA I M P++L LDEPT+GLD + L L
Sbjct: 131 RDRV--PHHL---SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCPAL 296
G TVI S HQ V E+ D +Y++ G+ V +G F + A+ P+L
Sbjct: 186 TYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDLPSL 242
|
Length = 277 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-16
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
P +TAL+GPSGSGKSTLL +++ + L ++G+I+ NGH +
Sbjct: 30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI---YSPRTDTVDLRK 86
Query: 139 LIGT---------LTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
IG +++ E + Y RL+ + DK E VE+++ + D +
Sbjct: 87 EIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE---AVEKSLKGASIWDEVKDRLH 143
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR--T 246
+ L G+SGG+++RV IA + P+++ LDEPTS LD +A + +TL L D
Sbjct: 144 DSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLL 202
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
V S+ Q S + DR G + + +T F
Sbjct: 203 VTRSMQQAS----RISDRTGFFLDGDLIEYNDTKQMF 235
|
Length = 252 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-------HK- 122
VL+GLT PG + AL+GPSGSGKST+ L + G +LL+G H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552
Query: 123 --TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
++ A V Q+ L +VRE I+Y +++ + K I M
Sbjct: 553 LHRQV-----ALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFI--MEFP 604
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ DT +G +SGG+++R++IA ++ +PR+L LDE TS LD+ + Q R
Sbjct: 605 NGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL-QESRS- 661
Query: 241 SRDGRTVIASIHQPS 255
R RTV+ H+ S
Sbjct: 662 -RASRTVLLIAHRLS 675
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-16
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+L +L + G + LMGPSG GKSTLL + LA +G + LN
Sbjct: 8 VSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE 66
Query: 121 HKTKLSFGTAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+L AA + QD L L+V + + ++ LP + + +R +
Sbjct: 67 --QRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALE 120
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
GL +SGG+R RV++ +L +P+ L LDEP S LD A
Sbjct: 121 RSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLSFG 128
+L+ ++ +PG + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 129 T-----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT------IIEM 177
V Q+ N++ ++R+ I+ L D E+ + I E+
Sbjct: 72 AWLRRQVGVVLQE-NVLFNRSIRDNIA------LADPGMSMERVIEAAKLAGAHDFISEL 124
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
DT++G G+SGG+R+R++IA ++ PR+L DE TS LD + + + +
Sbjct: 125 PEG--YDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ GRTVI H+ S+ + DR+ ++ G+ V
Sbjct: 182 HDIC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIV 215
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 36/208 (17%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKT 123
H VL+G++ A G + +++G SGSGKST L ++ FL +G+I +NG +
Sbjct: 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-------FLEKPSAGSIRVNGEEI 70
Query: 124 KLSFGTA------------------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
+L V Q NL +TV E + + L + +E
Sbjct: 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAE 128
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
E+ + ++G+ + AD HL SGG+++RV+IA + M P ++ DEPTS L
Sbjct: 129 AIERAEKYLAKVGIAEKADAYPA--HL---SGGQQQRVAIARALAMEPEVMLFDEPTSAL 183
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
D V + ++ L+ +GRT++ H+
Sbjct: 184 DPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 30/234 (12%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL-------SSRL-ASNAFLSGTI 116
+G+T VL G+ +PG + A++GPSGSGK+TLL + + + + +
Sbjct: 14 HGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR 71
Query: 117 LLNGHKTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVE 171
L+ K + +V Q+ NL TV E I + P P E
Sbjct: 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARAR 126
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ ++GL + + R +SGG+++RV+IA + MRP ++ DEPTS LD
Sbjct: 127 ELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGKTVYFGETSAAF 283
V T+R L+++ RT++ H+ S F ++ DR + G+ V G A F
Sbjct: 182 EVLNTIRQLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
LE + E G L ++GPSG GK+TLL+ ++ + G+I L+G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAER 72
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V Q++ L+ V++ +++ +L + ++ + + + ++GL+ I W
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI--W 127
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT----LRCLSRDGRT 246
L SGG+R+RV IA + P+LL LDEP LD AF Q L+ G+
Sbjct: 128 QL---SGGQRQRVGIARALAANPQLLLLDEPFGALD---AFTREQMQTLLLKLWQETGKQ 181
Query: 247 VIASIHQPSSEVFELFDRLYLLSGG 271
V+ H VF + L LLS G
Sbjct: 182 VLLITHDIEEAVF-MATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 43/259 (16%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
KDL V V +L+G+ + G + A+MGP+GSGKSTL + G
Sbjct: 7 KDLHVEV----EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEG 61
Query: 115 TILLNGHKTK-------------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
IL +G L+F Q I +T + + + R +
Sbjct: 62 EILFDGEDILELSPDERARAGIFLAF-------QYPVEIPGVTNSDFLRAAMNARRGARG 114
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLR-----GISGGERRRVSIALEILMRPRLL 216
E ++ +GL + L G SGGE++R I +L+ P+L
Sbjct: 115 ILPEFIKELKEKAELLGLDEE--------FLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTV 274
LDEP SGLD A V + + L +GR V+ H + + D++++L G+ V
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIV 224
Query: 275 YFGETSAAFEFFAQAGFPC 293
G+ A E + G+
Sbjct: 225 KSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 35/233 (15%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ ++ EPG A++GPSGSGKSTLL L L SG++ +G
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLA-GLDVQ 523
Query: 131 AY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---MGLQD 181
A V Q+ L+ + ++ E I+ A L L + + L E I MG+
Sbjct: 524 AVRRQLGVVLQNGRLM-SGSIFENIAGGAPLTLDEAWEAARMAGLAED--IRAMPMGMH- 579
Query: 182 CADTVI---GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
TVI G +SGG+R+R+ IA ++ +PR+L DE TS LD+ V+++L
Sbjct: 580 ---TVISEGGG----TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE 632
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY---FGETSAAFEFFAQ 288
L + R VIA H+ S+ + DR+Y+L G+ V + E A FAQ
Sbjct: 633 RL-KVTRIVIA--HRLST-IRNA-DRIYVLDAGRVVQQGTYDELMAREGLFAQ 680
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125
G+ +L+G++ + G ++GPSGSGKSTL L + SG++ L+G +
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL---VGIWPPTSGSVRLDGADLRQ 402
Query: 126 ----SFG-TAAYVTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
G Y+ QD L GT + E I+ P+K+ + + V I + L
Sbjct: 403 WDREQLGRHIGYLPQDVELFDGT--IAENIARFGEEADPEKVIEAARLAGVHELI--LRL 458
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
DT IG +SGG+R+R+++A + P L+ LDEP S LDS + +
Sbjct: 459 PQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
G TV+ H+PS D++ +L G+ FG
Sbjct: 518 AKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPRE 556
|
Length = 580 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 40/280 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----HKTKLS 126
V+ GL+ G L+GP+G+GKST+ + + +A G I + G + +L+
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARLA 112
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
V Q DNL TVRE + R M E ++ + L+ AD
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADAR 169
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ + +SGG +RR+++A ++ P+LL LDEPT+GLD A + + LR L G+T
Sbjct: 170 VSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 224
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALR----NP--- 299
++ + H E L DRL +L G+ + G A + G C + +P
Sbjct: 225 ILLTTHF-MEEAERLCDRLCVLEAGRKIAEGRPHALID--EHIG--CQVIEIYGGDPHEL 279
Query: 300 -------------SDHFLRCINSDFDKVKATLKGSMKLKF 326
S L C D ++V+ L+G L+
Sbjct: 280 SSLVKPYARRIEVSGETLFCYAPDPEQVRVQLRGRAGLRL 319
|
Length = 340 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-16
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------HK 122
L+G++ + G L+GPSG GK+TLL ++ SG ILL+G HK
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
T V Q+ L LTV E I++ RL+ K+P +E + V + + L+
Sbjct: 72 RP--VNT---VFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGY 123
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
A+ +SGG+++RV+IA ++ P++L LDEP LD + L+ L +
Sbjct: 124 ANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178
Query: 243 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ G T + H E + DR+ +++ GK G
Sbjct: 179 ELGITFVFVTHD-QEEALTMSDRIAVMNKGKIQQIG 213
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 3e-16
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL 125
+ L+ + +TAL+GPSG GKSTLL L+ + L A + G +LL+G
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI-Y 77
Query: 126 SFGTAAY--------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
V Q N +++ + ++Y RL + I+E
Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRL--------HGIKDKELDEIVES 128
Query: 178 GLQDCA--DTVIGNWH--LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
L+ A D V H G+SGG+++R+ IA + ++P +L +DEPTS LD +
Sbjct: 129 SLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 4e-16
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 18/155 (11%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---HKTKLSFGTAAYVTQ 135
E G A++GPSG+GKSTLL+ ++ L SG++ LNG T S + + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 136 DDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
++NL LTV + I + L+L + +R + +MG++D + G
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLN-----AAQREKLHAIARQMGIEDLLARLPGQ---- 129
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+SGG+R+RV++A ++ +L LDEP S LD A
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-16
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 29/206 (14%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
G VL+ ++ G AL GPSG+GKSTLL +L A+ SG IL+
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL---YANYLPDSGRILVRHEGAW 73
Query: 125 LSFGTAA-------------YVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLV 170
+ A+ YV+Q +I ++ E ++ R +P + + R L+
Sbjct: 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 171 ERTIIEMGLQDCADTVIGNWHL--RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
R I L WHL SGGE++RV+IA + +L LDEPT+ LD+A
Sbjct: 134 ARLNIPERL----------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQP 254
V + + G +I H
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 4e-16
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS 126
V+ G++ + G + L+GP+G+GK+T + + + SG ILL+G TKL
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLP 68
Query: 127 FGTAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
A Y+ Q+ ++ LTV E I +R K EK +E + E +
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITH 125
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+ +SGGERRRV IA + P+ L LDEP +G+D A + + ++ L
Sbjct: 126 LRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G V+ + H E + DR Y++ GK + G
Sbjct: 181 DRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 9e-16
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---- 121
G+ L+ G A++G SGSGKSTLL L+ G+I LNG
Sbjct: 348 GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIAS 404
Query: 122 -KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+ T + +TQ +L T+R+ LRL + E+ + + ++GL+
Sbjct: 405 LDEQALRETISVLTQRVHLFSG-TLRDN------LRLANPDASDEE---LWAALQQVGLE 454
Query: 181 DCADTVIGNWHL------RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
++ + R +SGGERRR+++A +L L LDEPT GLD V
Sbjct: 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L + G+T++ H+ E DR+ +L GK +
Sbjct: 515 ALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKII 551
|
Length = 573 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 9e-16
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 39/237 (16%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------HKTKLSFGTAA 131
E G L+GPSGSGK+T L + +RL SG IL++G + + G
Sbjct: 25 EEGEFLVLIGPSGSGKTTTL-KMINRLIEPT--SGEILIDGEDISDLDPVELRRKIG--- 78
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGN 189
YV Q L LTV E I+ +P + W ++R + + +GL D ++ +
Sbjct: 79 YVIQQIGLFPHLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGL-DPSE--YAD 130
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+ +SGG+++RV +A + P +L +DEP LD + + ++ L ++ G+T++
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
H E +L DR+ ++ G+ V + P L NP++ F+
Sbjct: 191 FVTHD-IDEALKLADRIAVMDAGEIVQYDT-------------PDEILANPANDFVE 233
|
Length = 309 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 72/239 (30%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 63 LSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG 120
L GE H L +T +TAL+GPSG GKSTLL + + L ++G IL NG
Sbjct: 14 LWYGEKH-ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72
Query: 121 HKTKLSFGTAAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVE 171
+ A V IG + ++ E ++Y R+ K+TL
Sbjct: 73 ENIM---DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIH-----GEKNKKTL-- 122
Query: 172 RTIIEMGLQDCA--DTVIGNWH--LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
TI+E L+ A D V H +SGG+++R+ IA + + P ++ +DEP S LD
Sbjct: 123 DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
A + + L ++ TVI H Q ++ V + +YL GK + F +T+ FE
Sbjct: 183 IATAKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFMYL---GKLIEFDKTTQIFE 237
|
Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFGTAAYVTQDDNLI 140
L+GPSG GK+TLL L+ + SG+I+L+G V Q L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINM---VFQSYALF 54
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200
+TV E +++ ++R K+P +E + V + + L++ AD +SGG++
Sbjct: 55 PHMTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQ 106
Query: 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVF 259
+RV++A ++ +P++L LDEP S LD + L+ + G T + H E
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD-QEEAM 165
Query: 260 ELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303
+ DR+ ++ GK AQ G P P++ F
Sbjct: 166 TMSDRIAIMRKGK-------------IAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 1e-15
Identities = 74/267 (27%), Positives = 119/267 (44%), Gaps = 23/267 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLA---SNAFLSG-TILLNGHKTKLSFGTAAYVTQD 136
PG L+G +G+GK+T L+ +A ++G +IL N + G Y Q
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG---YCPQF 2020
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
D + LT RE + ARLR +P E + +I +GL AD + G + S
Sbjct: 2021 DAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTY-----S 2072
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
GG +R++S A+ ++ P L+ LDEPT+G+D A + T+ + R+GR V+ + H
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS-ME 2131
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKA 316
E L RL ++ G G F +++P D L +N +
Sbjct: 2132 ECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQG 2191
Query: 317 TLKGSMK-------LKFETSDDPLEKI 336
GS++ L+F+ S L +I
Sbjct: 2192 NFPGSVQRERHYNMLQFQVSSSSLARI 2218
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-15
Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 43/225 (19%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L KDL V V E +L+G+ + G + ALMGP+GSGKSTL +
Sbjct: 1 LEIKDLHVSV--GGKE---ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV- 54
Query: 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G IL G +D I L E R RL + + +
Sbjct: 55 TEGEILFKG--------------ED---ITDLPPEE------RARLGIFLAFQYPPEIPG 91
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ L+ + G SGGE++R I +L+ P L LDEP SGLD A
Sbjct: 92 VKNADF-LRYVNE---------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALR 141
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTV 274
V + + L +G++V+ H + + DR+++L G+ V
Sbjct: 142 LVAEVINKLREEGKSVLIITHYQ--RLLDYIKPDRVHVLYDGRIV 184
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 36/232 (15%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
TH L+G+ + G +TA++G +G+GKSTL L+ L + SG IL +G S
Sbjct: 19 TH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSR 74
Query: 128 G-------TAAYVTQD-DNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMG 178
+ V QD DN + + +V + +S+ A L+LP+ E R V+ + G
Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED----EVRKRVDNALKRTG 130
Query: 179 LQDCADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
++ HL+ +S G+++RV+IA ++M P++L LDEPT+GLD +
Sbjct: 131 IE----------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 234 TQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETSAAF 283
+ L + ++ G T+I + H ++ L+ D ++++ G+ + G F
Sbjct: 181 MKLLVEMQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-15
Identities = 70/216 (32%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGT 129
L+ ++ EPG AL+G SGSGKSTL+ L R SG ILL+GH + +
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPD--SGQILLDGHDLADYTLAS 403
Query: 130 ----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD- 184
A V+QD L T+ I+Y + R +ER + QD D
Sbjct: 404 LRRQVALVSQDVVLFND-TIANNIAYGRTEQAD--------RAEIERALAAAYAQDFVDK 454
Query: 185 ------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
T IG + +SGG+R+R++IA +L +L LDE TS LD+ + V L
Sbjct: 455 LPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L + GRT + H+ S+ E DR+ ++ G+ V
Sbjct: 514 RLMQ-GRTTLVIAHRLST--IEKADRIVVMDDGRIV 546
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
+ T L GL+ G ++G +G+GKSTLL+A++ L SG
Sbjct: 5 SNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SG 61
Query: 115 TILLNGHK-TKLSF----GTAAYVTQD--DNLIGTLTVRETISYSAR--------LRLPD 159
IL++G TK S A V QD LT+ E ++ + L +
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219
+ S + L + +GL++ IG +SGG+R+ +S+ + L P++L LD
Sbjct: 122 RRRSSFRERL---ARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLD 173
Query: 220 EPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
E T+ LD A FV + T + + T + H + + +RL +L GK V
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL-DYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-15
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 21/188 (11%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---HKTKLSF 127
+ GL+ G + GP+GSGK+TLL L+ L+G +LLNG + S
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPLDFQRDSI 71
Query: 128 GTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Y+ + TL+V E + + VE + +GL D
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP 122
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +S G++RRV++A +L L LDEPT+ LD A + + G
Sbjct: 123 VAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177
Query: 247 VIASIHQP 254
V+ + HQ
Sbjct: 178 VVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 37/267 (13%)
Query: 42 TEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101
T++ D A+L+ +DL V G+ H L+G++ ++TAL+GPSG GKST L
Sbjct: 36 TDYEFDGDAKLSVEDLDVYY----GDDH-ALKGVSMDIPEKSVTALIGPSGCGKSTFLRC 90
Query: 102 LS---SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTL---------TVRETI 149
L+ R+ + A + G++ L+G + + + +G + ++RE I
Sbjct: 91 LNRMNDRIKA-ARIDGSVELDGQDI---YQDGVNLVELRKRVGMVFQSPNPFPKSIRENI 146
Query: 150 SYSAR----------LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
SY R RL + + LVER++ + L D + + + L G+SGG+
Sbjct: 147 SYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL-GLSGGQ 205
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSE 257
++R+ IA + + P ++ +DEP S LD A + + L+ + TV+ H Q ++
Sbjct: 206 QQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAAR 264
Query: 258 VFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + L+GG+ V + +T FE
Sbjct: 265 ISD--QTAVFLTGGELVEYDDTDKIFE 289
|
Length = 305 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 88/292 (30%), Positives = 132/292 (45%), Gaps = 54/292 (18%)
Query: 22 SIVVG-GLSPLSETI--WKEKINTEFSGDVSARLTWKDLTVM------------------ 60
SI+VG L+P+ I WK+ FSG AR +K L +
Sbjct: 264 SILVGRALAPIDGAIGGWKQ-----FSG---ARQAYKRLNELLANYPSRDPAMPLPEPEG 315
Query: 61 -VTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
+++ N G L G++ + G A++GPSGSGKSTL + + S
Sbjct: 316 HLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTS 372
Query: 114 GTILLNGHKTKL----SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
G++ L+G K +FG Y+ QD L TV E I+ P+K+ + K
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLA 431
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
V I+ L D DTVIG G SGG+R+R+++A + P+L+ LDEP S LD
Sbjct: 432 GVHELIL--RLPDGYDTVIGP---GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
+ ++ L G TV+ H+PS + D++ +L G+ FGE
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 40/268 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH----KTKLSFGTAAYVTQDD 137
G L+GP+G+GKST+ L ++ + G I + G + +L+ V Q D
Sbjct: 30 GECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLARVAIGVVPQFD 86
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
NL TVRE + R M E ++ + L+ AD + +SG
Sbjct: 87 NLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVAL-----LSG 138
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257
G +RR+++A ++ P+LL LDEPT+GLD A + + LR L G+T++ + H E
Sbjct: 139 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF-MEE 197
Query: 258 VFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALR----NP-------------- 299
L DRL +L G+ + G A + Q G C + +P
Sbjct: 198 AERLCDRLCVLESGRKIAEGRPHALID--EQIG--CNVIEIYGGDPDELRELIRPYARRI 253
Query: 300 --SDHFLRCINSDFDKVKATLKGSMKLK 325
S L C D ++V+ L+G L+
Sbjct: 254 EVSGETLFCYARDPEQVRVQLRGRTDLR 281
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-15
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 32/212 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------V 133
G + A+MGPSG+GKSTLL+ ++ + SG+I +N + G A Y +
Sbjct: 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVND---QSHTGLAPYQRPVSML 75
Query: 134 TQDDNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Q++NL LTVR+ I L+L +E++ V ++G+ D D +
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLN-----AEQQEKVVDAAQQVGIADYLDRLPEQ-- 128
Query: 192 LRGISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSA---AAFFVTQTLRCLSRDGRTV 247
+SGG+R+RV++A L+RP +L LDEP S LD + + L C R RT+
Sbjct: 129 ---LSGGQRQRVALA-RCLVRPNPILLLDEPFSALDPLLREEMLALVKQL-CSERQ-RTL 182
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
+ H S+ + ++ ++S GK +
Sbjct: 183 LMVTHHL-SDARAIASQIAVVSQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 5e-15
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 35/243 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126
VL+GL +T L+G +G GKSTL LS L G +L G S
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 127 ---FGTAAYVTQD-DNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQD 181
A V QD + I + I++S R L +P+ + R + D
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAE--------ITRRV------D 118
Query: 182 CADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
A T++ H R +S G+++RV+IA ++++ R L LDEPT+GLD A +
Sbjct: 119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPC 293
+R + G VI S H ++E+ D +Y+L G+ + G F E QAG
Sbjct: 179 IRRIVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQ 237
Query: 294 PAL 296
P L
Sbjct: 238 PWL 240
|
Length = 271 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 5e-15
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 25/168 (14%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ +L+ L+ + G A++GP+G+GKSTLL L+ L LSGT+ + G
Sbjct: 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKV-G 382
Query: 121 HKTKLSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
K+ Y Q D L TV E +S PD E R + R G
Sbjct: 383 ETVKI-----GYFDQHRDELDPDKTVLEELSEGF----PDGDE-QEVRAYLGR----FGF 428
Query: 180 -QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ + +G +SGGE+ R+ +A +L P LL LDEPT+ LD
Sbjct: 429 TGEDQEKPVGV-----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 7e-15
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 30/212 (14%)
Query: 89 GPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTA-------AYVTQD---D 137
G +G+G+S L++A+S R + SG ILLNG AYV +D
Sbjct: 291 GVAGNGQSELVEAISGLRKPA----SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 138 NLIGTLTVRETISYS-------ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
L+ L++ E + +R D R I E ++ +
Sbjct: 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLD---RRAIRKFARELIEEFDVRAPSPDA---- 399
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
R +SGG ++++ +A E+ RP LL +PT GLD A F+ + L L G+ V+
Sbjct: 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL- 458
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
I + E+ EL DR+ ++ G+ V A
Sbjct: 459 ISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
|
Length = 501 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 7e-15
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 59/204 (28%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA-----AYVT 134
G + + G G+G++ L +AL SG I L+G T+ S A AYV
Sbjct: 25 AGEIVGIAGLVGNGQTELAEALF---GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 135 QD---DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
+D + L+ L+V E I+ S+ L
Sbjct: 82 EDRKREGLVLDLSVAENIALSSLL------------------------------------ 105
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
SGG +++V +A + PR+L LDEPT G+D A + + +R L+ G+ V+
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI- 160
Query: 252 HQPSS---EVFELFDRLYLLSGGK 272
SS E+ L DR+ ++ G+
Sbjct: 161 ---SSELDELLGLCDRILVMYEGR 181
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 8e-15
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGH---KTKLSFGTAAY 132
G L AL+GPSGSGK+TLL RL A L SGTIL G + +
Sbjct: 26 PSGELVALLGPSGSGKTTLL-----RLI--AGLERPDSGTILFGGEDATDVPVQERNVGF 78
Query: 133 VTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
V Q L +TV + +++ R++ ++ P +E R V + + L AD +
Sbjct: 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----Y 133
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-----GRT 246
+SGG+R+RV++A + + P++L LDEP LD+ V + LR R T
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK----VRKELRRWLRRLHDELHVT 189
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ H E E+ DR+ +++ G+ G
Sbjct: 190 TVFVTHD-QEEALEVADRVVVMNKGRIEQVG 219
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 37/255 (14%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT G + L G L+GPSGSGK+T + ++ + SG I ++G
Sbjct: 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDG 62
Query: 121 HKT------KL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
+L G YV Q L +TV E I+ +P + W +++ +
Sbjct: 63 EDIREQDPVELRRKIG---YVIQQIGLFPHMTVEENIAL-----VPKLLKWPKEK--IRE 112
Query: 173 TIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
E + L + + +SGG+++RV +A + P LL +DEP LD
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
+ + + L ++ G+T++ H E F L DR+ ++ G+ V Q G
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKNGEIV-------------QVG 218
Query: 291 FPCPALRNPSDHFLR 305
P LR+P++ F+
Sbjct: 219 TPDEILRSPANDFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-14
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------ 132
G + ALMG +G+GKSTLL LS + +G+IL++G + + + TAA
Sbjct: 27 CRAGQVHALMGENGAGKSTLLKILS---GNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
+ Q+ +L+ +TV E + +LP K +R L + L+ + + L
Sbjct: 84 IYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQ--LEHLGVDIDPDTPL 138
Query: 193 RGISGGERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+ +S G+R+ V IA + L R R++ DEPTS L + + + +R L +GR ++
Sbjct: 139 KYLSIGQRQMVEIA-KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVS 197
Query: 252 HQPSSEVFELFDRLYLLSGGKTV 274
H+ E+F L D + + G+ V
Sbjct: 198 HR-MEEIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 37/252 (14%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L KDL V V E +L+G+ + G + A+MGP+GSGKSTL ++ +
Sbjct: 1 LKIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV- 54
Query: 112 LSGTILLNGHKTK-------------LSFGTAAYVTQDDNLIGTLTVRETI--SYSARL- 155
SGTIL G L+F Q I ++ E + + +AR
Sbjct: 55 TSGTILFKGQDLLELEPDERARAGLFLAF-------QYPEEIPGVSNLEFLRSALNARRS 107
Query: 156 -RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214
R + + + L++ + +G+ + N G SGGE++R I L+ P+
Sbjct: 108 ARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN---EGFSGGEKKRNEILQMALLEPK 164
Query: 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGK 272
L LDE SGLD A V + + L R+ + H + D +++L G+
Sbjct: 165 LAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGR 222
Query: 273 TVYFGETSAAFE 284
V G+ A E
Sbjct: 223 IVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 33/201 (16%)
Query: 92 GSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA--------AYVTQD---DNLI 140
G+G++ L AL + SG ILL+G + + AYV +D + L+
Sbjct: 295 GAGRTELARAL---FGARPASSGEILLDG--KPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349
Query: 141 GTLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCA--DTVIGNWHLRGIS 196
+++ E I+ ++ R + + R L ER I + + + IG +S
Sbjct: 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSPEQPIGT-----LS 403
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
GG +++V +A + P++L LDEPT G+D A + + +R L+ +G+ ++ SS
Sbjct: 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMI----SS 459
Query: 257 EVFELF---DRLYLLSGGKTV 274
E+ EL DR+ ++ G+ V
Sbjct: 460 ELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 31/234 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRL----ASNAFLSGTILLNGHKTKLSFGT---AAY 132
G + +MG SGSGKST + L+ RL A F+ G ++ +L
Sbjct: 17 AKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
V Q L +T+ + S L P E++ + +GL++ +
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YP 127
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 251
+SGG ++RV +A + P +L +DE S LD + L+ L +T++
Sbjct: 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
H E + DR+ ++ G+ V Q G P LRNP++ ++
Sbjct: 188 HD-LDEAIRIGDRIVIMKAGEIV-------------QVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 19/210 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT 129
+ ++ ++ L+GP+G+GKSTLL ++ L SG I+ +GH T+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHK 71
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
+ + L LT RE + L LPD I E+ L T G
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDS------------RIDEV-LNIVDLTNTG 118
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+ S G ++R+ IA+ +L P+LL LDEPT+GLD + + +R G TVI
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
S H SEV +L D + ++S G Y G+
Sbjct: 179 LSSH-ILSEVQQLADHIGIISEGVLGYQGK 207
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT S G+ ++ ++ PG + L+GP+G+GK+T + L G I NG
Sbjct: 8 VTKSFGDKK-AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNG 63
Query: 121 HK-TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT----LVERTII 175
++ Y+ ++ L +TV + + Y A L+ MP +E + +ER I
Sbjct: 64 GPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEI 120
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+S G ++++ ++ P LL LDEP SGLD +
Sbjct: 121 VGKKTKKIKE---------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
+ L +G T+I S H+ V EL DRL +L G+TV +G
Sbjct: 172 AIFELKEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 3e-14
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 34/250 (13%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLA 107
++ +DL V S G+ VL+G+ T+TALMGPSGSGKSTLL + L
Sbjct: 2 NKIEIRDLKV----SFGQVE-VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELY 56
Query: 108 SNAFLSGTILLNGH---KTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARL------- 155
A +SG + L+G K + V Q N I L++ E ++ +L
Sbjct: 57 PEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSK 116
Query: 156 -RLPDKMPWS-EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213
L +++ W+ EK L + ++D D G +SGG+++R+ IA + +P
Sbjct: 117 KELQERVRWALEKAQLWDE------VKDRLDAPAGK-----LSGGQQQRLCIARALAFQP 165
Query: 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273
+L DEPT+ LD + L +D T++ H P + + D + L G+
Sbjct: 166 EVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFP-QQAARISDYVAFLYKGQI 223
Query: 274 VYFGETSAAF 283
V +G T F
Sbjct: 224 VEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-14
Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 28/209 (13%)
Query: 61 VTLSNGETHNVLEGLTGY---AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
+ S G+ + L LTG + G AL+G SGSGKSTLL L+ L + SG +
Sbjct: 12 LKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGS--SGEVS 68
Query: 118 LNGH---------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKR 167
L G + KL +V Q LI TL E + A LR + + +
Sbjct: 69 LVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK 128
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L+E ++GL D HL +SGGE++RV++A RP +LF DEPT LD
Sbjct: 129 ALLE----QLGLGKRLD------HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
Query: 227 SAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
+ L L+R+ G T+I H
Sbjct: 179 RQTGDKIADLLFSLNREHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHK-TKLSFGTAAY---- 132
+TAL+GPSG GKSTLL +L+ + L + G +L +G
Sbjct: 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRV 84
Query: 133 --VTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
V Q N +++ + I+Y RL + DK E +VE ++ + L D V
Sbjct: 85 GMVFQKPNPF-PMSIYDNIAYGPRLHGIKDK---KELDEIVEESLKKAALWD---EVKDR 137
Query: 190 WHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
H G+SGG+++R+ IA + + P +L LDEPTS LD A + + ++ L + T+
Sbjct: 138 LHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTI 196
Query: 248 IASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ H Q ++ + DR G+ V +G T F
Sbjct: 197 VIVTHNMQQAARI---SDRTAFFYDGELVEYGPTEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 4e-14
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 47/209 (22%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
G L A++GP GSGKS+LL AL L LSG++ + G+ AYV+Q+
Sbjct: 28 VPKGELVAIVGPVGSGKSSLLSAL---LGELEKLSGSVSVP--------GSIAYVSQEPW 76
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------------DTV 186
+ T+RE I + P+ E+R E+ I + CA T
Sbjct: 77 IQNG-TIRENILFGK--------PFDEER--YEKVI-----KACALEPDLEILPDGDLTE 120
Query: 187 IGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRD 243
IG +GI SGG+++R+S+A + + LD+P S +D+ + L +
Sbjct: 121 IGE---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+T I HQ ++ D++ +L G+
Sbjct: 178 NKTRILVTHQL--QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-14
Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 58/248 (23%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++++ L++ L L+G G + L+GP+G+GKSTLL +R+A SG+I
Sbjct: 1 SILMQLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL----ARMAGMTSGSGSIQ 56
Query: 118 LNGHKTKLSFGTA-----AYVTQDDNLIGTL-------------TVRETISYSAR-LRLP 158
G + T AY++Q + T E ++ A L L
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD 116
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-----MRP 213
DK+ S +SGGE +RV +A +L P
Sbjct: 117 DKLGRS---------------------------TNQLSGGEWQRVRLAAVVLQITPDANP 149
Query: 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271
+LL LDEP + LD A + + L L + G ++ S H + R +LL G
Sbjct: 150 AGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD-LNHTLRHAHRAWLLKRG 208
Query: 272 KTVYFGET 279
K + G
Sbjct: 209 KLLASGRR 216
|
Length = 248 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 8e-14
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 49/207 (23%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTK---- 124
++E + +PG AL+G SGSGKST+ ++L + + SG IL +G +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTI-----AKLVAGLYQPWSGEILFDGIPREEIPR 548
Query: 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDC 182
+ + A V QD L TVR+ + TL + TI + L + C
Sbjct: 549 EVLANSVAMVDQDIFLFEG-TVRDNL------------------TLWDPTIPDADLVRAC 589
Query: 183 ADTVI--------GNWHL------RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
D I G + +SGG+R+R+ IA ++ P +L LDE TS LD
Sbjct: 590 KDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPS 255
+ LR R G T I H+ S
Sbjct: 650 TEKIIDDNLR---RRGCTCIIVAHRLS 673
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 8e-14
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL-------SSRL--ASNAFLSGTILL 118
H L +T G L+GPSG+GKS+LL L S L A N F
Sbjct: 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73
Query: 119 NGHKTKLSFGTAAYVTQDDNLIGTLTVRET-ISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+ L V Q NL LTV+E I R+ + + E+ + +
Sbjct: 74 DKAIRDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVL---GLSKDQALARAEKLLKRL 129
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L+ AD + L +SGG+++RV+IA ++M P++L DEPT+ LD + +
Sbjct: 130 RLKPYAD----RYPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 238 RCLSRDGRTVIASIHQ 253
+ L+ G T + H+
Sbjct: 185 KELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 9e-14
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 32/205 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G A+ GPSG GKSTLL ++S ++ SGT+L G +D +
Sbjct: 27 RAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEG--------------EDVST 69
Query: 140 IGTLTVRETISYSARLR--LPDKM------PWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
+ R+ +SY A+ D + PW + +R L A + +
Sbjct: 70 LKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA---LDLLARFALPDSI 126
Query: 192 LR----GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
L +SGGE++R+++ + P++L LDE TS LD + + + + R+
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 248 IASIHQPSSEVFELFDRLYLLSGGK 272
+ I + D++ L G
Sbjct: 187 VLWITHDKDQAIRHADKVITLQPGH 211
|
Length = 223 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 37/220 (16%)
Query: 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105
G V + + D V+ S + +E ++ A+PG A++GP+G+GKSTL+ L R
Sbjct: 329 GRVKGAVEFDD----VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQR 383
Query: 106 LASNAFLSGTILLNGHKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157
+ SG IL++G + + V QD L ++ + I R+
Sbjct: 384 VFDPQ--SGRILIDGTDIRTVTRASLRRNIAV---VFQDAGLFNR-SIEDNI----RVGR 433
Query: 158 PDKMPWSEKRTLVERT----IIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILM 211
PD E R ER IE D DTV+G RG +SGGER+R++IA +L
Sbjct: 434 PDATD-EEMRAAAERAQAHDFIERKP-DGYDTVVGE---RGRQLSGGERQRLAIARALLK 488
Query: 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
P +L LDE TS LD V L L + GRT +IA
Sbjct: 489 DPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIA 527
|
Length = 588 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFG 128
V+ ++ G + L+GP+G+GK+T + + + SG ILL+ TKL
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMH 74
Query: 129 TAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Y+ Q+ ++ LTV + I +R D +E++ ++ + E +
Sbjct: 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK-AERKEELDALLEEFHIT--- 130
Query: 184 DTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
HLR +SGGERRRV IA + P+ + LDEP +G+D A + + ++
Sbjct: 131 -------HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L G V+ + H E ++ DR Y++S GK
Sbjct: 184 HLKDRGIGVLITDHN-VRETLDICDRAYIISDGK 216
|
Length = 243 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 35/225 (15%)
Query: 42 TEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101
+F + +T ++L++ + +L L PG + G SG+GK++LL A
Sbjct: 383 IDFDDNADHGITLENLSLR----TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 102 LSSRLASNAFL----SGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY-SARLR 156
L A L SG I + L Y+ Q GTL RE + Y +A
Sbjct: 439 L-------AGLWPWGSGRISMPADSALLFLPQRPYLPQ-----GTL--REALCYPNAAPD 484
Query: 157 LPDKMPWSEKRTLVERTIIEMGLQDCADT--VIGNWHLRGISGGERRRVSIALEILMRPR 214
D LV + ++GL D A+ W R +SGGE++R++ A +L +P+
Sbjct: 485 FSDA-------ELVA-VLHKVGLGDLAERLDEEDRWD-RVLSGGEQQRLAFARLLLHKPK 535
Query: 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259
+FLDE TS LD + Q L+ D TVI+ H+P+ F
Sbjct: 536 WVFLDEATSALDEETEDRLYQLLKEELPDA-TVISVGHRPTLWNF 579
|
Length = 604 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTA------AYVTQ 135
+TAL+GPSG GKSTLL L+ + L ++G + ++G + A V Q
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ 90
Query: 136 DDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
N +++ E ++Y R + + DK E +VER++ L D + H G
Sbjct: 91 KPNPF-PMSIYENVAYGLRAQGIKDKKVLDE---VVERSLRGAALWDEVKDRL-KSHAFG 145
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIH 252
+SGG+++R+ IA I M P ++ +DEPTS LD A + + + L ++ VI S+
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ 205
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR-CINSDF 311
Q + DR G+ V +T F NP D + +N DF
Sbjct: 206 QAR----RISDRTAFFLMGELVEHDDTQVIFS-------------NPKDDRTQGYVNGDF 248
|
Length = 249 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 16/213 (7%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVT 134
E +TAL+G SG GKST L + A + G + + G K V
Sbjct: 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85
Query: 135 QDDNLIGTLTVRETISYSARLR--LPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWH 191
Q N+ ++ E ISY+ +L + +K E+ LV + ++GL ++ D + N
Sbjct: 86 QQPNVF-VKSIYENISYAPKLHGMIKNK---DEEEALVVDCLQKVGLFEEVKDKLKQN-- 139
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++R+ IA + ++P+LL LDEPTS LD ++ + + L+ LS + ++ +
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + + L G+ + FGE+ FE
Sbjct: 200 NMQQGKRVADYTAFFHL--GELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-13
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 61/214 (28%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTI 116
++L+ + +L+ L+ +PG + GPSG+GKS+L AL A L SG I
Sbjct: 6 LSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-------AGLWPWGSGRI 58
Query: 117 LLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + L Y+ GTL RE + Y PW L
Sbjct: 59 GMPEGEDLLFLPQRPYLPL-----GTL--REQLIY----------PWD--DVL------- 92
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
SGGE++R++ A +L +P+ +FLDE TS LD + + Q
Sbjct: 93 -------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
L+ G TVI+ H+PS F DR+ L G
Sbjct: 134 LK---ELGITVISVGHRPSLWKF--HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 44/242 (18%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V++ +L L+ PG A++GP+G+GK+TLL L+ SG + L G
Sbjct: 37 VSVRRNG-KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP---SSGDVTLLG 92
Query: 121 H---KTKLSFGTAAYVTQDDNLIGTLTVRETISYSA---RLRLPDK-------------- 160
K + F +R+ I + R +
Sbjct: 93 RRFGKGETIF----------------ELRKRIGLVSSELHERFRVRETVRDVVLSGFFAS 136
Query: 161 -MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219
+ E T + + L+ + + +S GE+RRV IA ++ P LL LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 220 EPTSGLDSAAAFFVTQTLRCL--SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
EP GLD A + L L S ++ H E+ F LL G+ V G
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQG 255
Query: 278 ET 279
+
Sbjct: 256 KL 257
|
Length = 257 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---------H 121
L+G++ E G + +GP+G+GK+T L LS L SG + + G
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKF 92
Query: 122 KTKLS--FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPDKMPWSEKRTLVERTIIEMG 178
++ FG Q L L V ++ A + LP + + ++ +
Sbjct: 93 LRRIGVVFG------QKTQLWWDLPVIDSFYLLAAIYDLPP----ARFKKRLDELSELLD 142
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L++ DT +R +S G+R R IA +L P +LFLDEPT GLD A + L+
Sbjct: 143 LEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197
Query: 239 CLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+R+ G TV+ + H ++ L R+ ++ G+ +Y G
Sbjct: 198 EYNRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 35/207 (16%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTK 124
H VL+G++ A G + +++G SGSGKST L ++ FL G+I++NG
Sbjct: 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-------FLEKPSEGSIVVNGQTIN 70
Query: 125 LSFGT------------------AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK 166
L V Q NL +TV E + + L + E
Sbjct: 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEA 128
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R + + ++G+ + A G + + +SGG+++RVSIA + M P +L DEPTS LD
Sbjct: 129 RERAVKYLAKVGIDERAQ---GKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQ 253
V + ++ L+ +G+T++ H+
Sbjct: 185 PELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ G T VL + + G + ++GPSGSGKSTLL ++ SG ++++G
Sbjct: 7 VSKHFGPT-QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCIN---KLEEITSGDLIVDG 62
Query: 121 HKTK-------LSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVER 172
K L A V Q L LT E + + R+R K E
Sbjct: 63 LKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASK---EEAEKQARE 119
Query: 173 TIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ ++GL + A H +SGG+++RV+IA + ++P+L+ DEPTS LD
Sbjct: 120 LLAKVGLAERAH------HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173
Query: 232 FVTQTLRCLSRDGRTVIASIHQ 253
V + ++ L+ +G T++ H+
Sbjct: 174 EVLKVMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHK--------TKLSFGTAAYV 133
+TAL+GPSG GKST L L+ + L SN + G +LL+G +L V
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR-KRVGMV 90
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGNWH 191
Q N +++ + ++Y R+ +K+ L + I+E L+ A D V +
Sbjct: 91 FQKPNPF-PMSIYDNVAYGPRIH-----GIKDKKELDK--IVEWALKKAALWDEVKDDLK 142
Query: 192 LR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+SGG+++R+ IA I ++P ++ +DEPTS LD + + + L ++ VI
Sbjct: 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + + + +L+ G + F +T F
Sbjct: 203 THNMQQASRVSDYTAFFLM--GDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L G++ G A++G SG+GKST+L L N SG+I ++G + +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 131 AY-----VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
V QD L T+ I Y R + + I+ L + DT
Sbjct: 335 LRRAIGIVPQDTVLFND-TIAYNIKY-GRPDATAEEVGAAAEAAQIHDFIQS-LPEGYDT 391
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+G L+ +SGGE++RV+IA IL P +L LDE TS LD+ + LR +S GR
Sbjct: 392 GVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GR 449
Query: 246 TVIASIHQPSS 256
T + H+ S+
Sbjct: 450 TTLVIAHRLST 460
|
Length = 497 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-13
Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 42/225 (18%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125
+ VL+GL+ + G AL+G +G GKSTLL L+ G ILLNG
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPI-- 404
Query: 126 SFGTAAYVTQDDNLIGTLTVRETIS--------YSARLR----LPDKMPWSEKRTLVERT 173
A Y +R+ IS +SA LR L E V +
Sbjct: 405 ----ADYSEA--------ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQ 452
Query: 174 IIEMGLQDCADTVIG--NWHL----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+ GL+ + G W L R +SGGE+RR+ IA +L LL LDEPT GLD+
Sbjct: 453 V---GLEKLLEDDKGLNAW-LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
+ + L +++ +TV+ H+ + E FDR+ ++ G+
Sbjct: 509 ETERQILELLAEHAQN-KTVLMITHRLTG--LEQFDRICVMDNGQ 550
|
Length = 574 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 70/191 (36%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128
L+GL PG AL+GPSG+GKSTL L R SG ILL+G +
Sbjct: 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ--SGRILLDGVDLR-QLD 408
Query: 129 TA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
A A V QD L +V E I Y R D+ + R I L +
Sbjct: 409 PAELRARMALVPQDPVLFAA-SVMENIRY-GRPDATDEEVEAAARAAHAHEFIS-ALPEG 465
Query: 183 ADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DT +G RG+ SGG+R+R++IA IL +L LDE TS LD+ + V Q L L
Sbjct: 466 YDTYLGE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522
Query: 241 SRDGRT--VIA 249
+ GRT +IA
Sbjct: 523 MK-GRTTLIIA 532
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 3e-13
Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 21/230 (9%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNG--- 120
G+ H V + + E ++TA++GPSG GKST+L +++ L +A ++G ILL+
Sbjct: 15 GKNHAVKDVSMDFPE-NSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73
Query: 121 HKTKLSFGT----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + + V Q N +++ + + A +L ++ SE +VE ++
Sbjct: 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKR 131
Query: 177 MGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+ L D D + N +SGG+++R+ IA I ++P ++ +DEP S LD + + +
Sbjct: 132 VALWDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189
Query: 236 TLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ L ++ T+I H Q ++ V + Y+ G V GET F
Sbjct: 190 LIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYM---GDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-T 123
VL+G++ G + A++G SGSGKSTLL L + SG +L NG +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG---GLDNPTSGEVLFNGQSLS 70
Query: 124 KLSFGTAAY--------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
KLS A + Q +L+ T E ++ + K E + +
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLE 127
Query: 176 EMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
++GL+ + H +SGGER+RV+IA ++ +P L+ DEPT LD+ A +
Sbjct: 128 KVGLEHRIN------HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 235 QTLRCLSRDGRT 246
+ L+R+ T
Sbjct: 182 DLMLELNRELNT 193
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 6e-13
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-----KLS 126
L+GL+ G+ TAL+GP+G+GKSTLL L+ G + + G + K
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVNAENEKWV 77
Query: 127 FGTAAYVTQD-DNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V QD D+ + + TV + +++ + L E VE + + + D D
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD----EVERRVEEALKAVRMWDFRD 133
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
+HL S G+++RV+IA + M P ++ LDEP + LD + + L L G
Sbjct: 134 K--PPYHL---SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+TVI + H E D++ +L G+ + G+ S
Sbjct: 189 KTVIVATHD-VDLAAEWADQVIVLKEGRVLAEGDKS 223
|
Length = 274 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-13
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------VTQ 135
G + AL+G SG GKSTLL L+ A G I+L+G Y + Q
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSH---VPPYQRPINMMFQ 98
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
L +TV + I++ + DK+P +E + V + + +Q+ A +
Sbjct: 99 SYALFPHMTVEQNIAFGLK---QDKLPKAEIASRVNEMLGLVHMQEFA-----KRKPHQL 150
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---------CLSRDGRT 246
SGG+R+RV++A + RP+LL LDEP LD + LR L R G T
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLRDRMQLEVVDILERVGVT 202
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ H E + R+ +++ GK V GE +E
Sbjct: 203 CVMVTHD-QEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
|
Length = 377 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 30/233 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT 129
VL+GL G AL+GPSGSGKST+L L + G I + G + +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL---MTLEPIDEGQIQVEGEQLYHMPGRN 71
Query: 130 AAYVTQDD-----------------NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
V D+ NL TV + ++ + L L +EKR +
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM--- 128
Query: 173 TIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+++M GL D AD + +SGG+++RV+IA + MRP+++ DE TS LD
Sbjct: 129 ELLDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
V +R L+ + + + E DR+ G+ V G+ F
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-12
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG----TAAYVTQDDNL 139
+TA +G +G+GK+T L L+ L SGT+L+ G + + + Q + L
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
LTV E I + A+L+ W E + +E + + GL N + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKR-----NEEAQDLSGGM 1066
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259
+R++S+A+ + +++ LDEPTSG+D + + L R GRT+I S H E
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL-LKYRSGRTIIMSTHH-MDEAD 1124
Query: 260 ELFDRLYLLSGGK 272
L DR+ ++S G+
Sbjct: 1125 LLGDRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++L+ G +LE ++ PG L+G +G+GKSTLL L+ L ++ G
Sbjct: 9 LSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---------G 58
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMG 178
T+ Y++Q+ L TV + + + L ++ + L + +
Sbjct: 59 EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYAL-LADPDDELLA 117
Query: 179 LQDCADTVIGNWHLR----------GI----------SGGERRRVSIALEILMRPRLLFL 218
+ + W L G SGG RRRV++A +L P LL L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 219 DEPTSGLD 226
DEPT+ LD
Sbjct: 178 DEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-12
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ L+ + G AL+G SGSGKSTLL L+ L G I L+G +
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPV------S 67
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
+LI L R + DT + N
Sbjct: 68 DLEKALSSLISVLNQRPYL---------------------------------FDTTLRNN 94
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
R SGGER+R+++A +L ++ LDEPT GLD + + + +D +T+I
Sbjct: 95 LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWI 153
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFG 277
H + E D++ L GK + G
Sbjct: 154 THHLTG--IEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 29/220 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG---HKTKLSFGT----A 130
E +TAL+GPSG GKST L L+ + L + + G +LL+G +K+ +
Sbjct: 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV 86
Query: 131 AYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCA--DTVI 187
V Q N +++ + ++Y R + DK + L E I+E L+ A D V
Sbjct: 87 GMVFQQPNPF-PMSIYDNVAYGPRTHGIKDK------KKLDE--IVEKSLKGAALWDEVK 137
Query: 188 GNWHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
G+SGG+++R+ IA + + P +L +DEPTS LD + + + ++ L +D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-Y 196
Query: 246 TVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
T++ H Q +S + D+ G+ V FG+T F
Sbjct: 197 TIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-12
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 26/216 (12%)
Query: 47 DVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106
+ ARL + LT L G+ + V E LT G TA++GP+G GKSTLL LS RL
Sbjct: 3 ESVARLRGEQLT----LGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RL 56
Query: 107 ASNAFLSGTILLNG-----HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK- 160
+ A G + L+G + +K + Q+ G +TV+E + AR R P +
Sbjct: 57 MTPA--HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV---ARGRYPHQP 111
Query: 161 --MPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217
W E V + + G+ AD + +SGG+R+R IA+ + ++
Sbjct: 112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIML 166
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH 252
LDEPT+ LD + + + L L+R+ G T+ A +H
Sbjct: 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 28/223 (12%)
Query: 59 VMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTI 116
V VT NG H L + G++ AL+G +GSGKSTL AL RLAS G I
Sbjct: 12 VTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS-----GKI 64
Query: 117 LLNGHKTK--LSFGTAAYVTQDDNLIGTLTVR-ETISYSAR------LRLPDKMPWSEKR 167
+ G T+ L AYV Q + + + V E + R LR R
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAK----KRDR 120
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
+V + + + + IG +SGG+++RV +A I + +++ LDEP +G+D
Sbjct: 121 QIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
Query: 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
+ LR L +G+T++ S H S V E D ++ G
Sbjct: 176 KTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMVKG 217
|
Length = 272 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 67/243 (27%), Positives = 95/243 (39%), Gaps = 81/243 (33%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG + ++G SGSGK+TLL +S RL +A GT Y +D
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDA-----------------GTVTYRMRDGQPR 73
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL--QDCADTV------------ 186
T+ E +E+R L+ RT E G Q+ D +
Sbjct: 74 DLYTMSE----------------AERRRLL-RT--EWGFVHQNPRDGLRMQVSAGGNIGE 114
Query: 187 ----IGNWHL-------------------------RGISGGERRRVSIALEILMRPRLLF 217
IG H R SGG ++R+ IA ++ RPRL+F
Sbjct: 115 RLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVF 174
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276
+DEPT GLD + + LR L R+ G V+ H + L DRL ++ G+ V
Sbjct: 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLMVMKQGQVVES 233
Query: 277 GET 279
G T
Sbjct: 234 GLT 236
|
Length = 258 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 32/223 (14%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK 122
L+ L G L+GPSG GK+T L R+ A L SG I + G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTL-----RMI--AGLEEPTSGRIYIGGRD 63
Query: 123 -TKLSFG--TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
T L A V Q+ L +TV + I++ +LR K+P + I+ +
Sbjct: 64 VTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVP---------KDEIDERV 111
Query: 180 QDCADTV-IG---NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
++ A+ + I + + +SGG+R+RV++ I+ P++ +DEP S LD+ +
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 236 TLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
L+ L + G T I H E + DR+ +++ G+ G
Sbjct: 172 ELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 2e-12
Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 23/226 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA---SNAFLSGTILLNGH------ 121
+L+ +T ++ +MGPSGSGKSTLL L+ + S + G +L G
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMG 178
K + G V Q N L++ + I+Y + + +K E + +VE + ++G
Sbjct: 85 AIKLRKEVGM---VFQQPNPFPHLSIYDNIAYPLKSHGIKEK---REIKKIVEECLRKVG 138
Query: 179 L-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L ++ D + N +SGG+++R++IA + ++P++L +DEPTS +D + + + +
Sbjct: 139 LWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
L + VI S H P +V + D + L G+ V +G ++ F
Sbjct: 197 TELKNEIAIVIVS-HNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 39/227 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHK-TKLSFGT----AAY 132
G AL+GPSG+GK++LL+AL FL G++ +NG + +L + ++
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALL------GFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 133 VTQDDNLI-GTLTVRETISYSARLRLPDKMPWSEKRTLVERTII-------EMGLQDCAD 184
V Q+ L GTL R+ + L PD + + +E + GL D
Sbjct: 428 VGQNPQLPHGTL--RDNV----LLGNPD-ASDEQLQQALENAWVSEFLPLLPQGL----D 476
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T IG+ G+S G+ +R+++A +L +LL LDEPT+ LD+ + V Q L SR
Sbjct: 477 TPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-R 534
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTV---YFGETSAAFEFFAQ 288
+T + HQ E +D+++++ G+ V + E S A FA
Sbjct: 535 QTTLMVTHQ--LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFAT 579
|
Length = 588 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 25/213 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAA-----YVT 134
PG + AL+G +G+GKSTL+ LS GTI +N KL AA +
Sbjct: 30 PGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 135 QDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVI 187
Q+ ++I LTV E + R K + W E R ++ +GL+ D +
Sbjct: 87 QELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV 143
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
N +S ++ + IA +++ +++ +DEPTS L + ++ + L ++G +
Sbjct: 144 AN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAI 198
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ H+ +E+ + DR ++ G +V G S
Sbjct: 199 VYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS 230
|
Length = 510 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 38/180 (21%)
Query: 57 LTVMVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
+T +V+L N G+ VL ++ +PG + L+GP+G+GKSTL+ + +A +
Sbjct: 1 MTSLVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-- 57
Query: 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEK 166
G I KL G YV Q L TL + T++ RLR P D +P + K
Sbjct: 58 -EGVIK---RNGKLRIG---YVPQKLYLDTTLPL--TVNRFLRLR-PGTKKEDILP-ALK 106
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R +I+ +Q +SGGE +RV +A +L RP+LL LDEPT G+D
Sbjct: 107 RVQAGH-LIDAPMQK-------------LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 51/189 (26%), Positives = 71/189 (37%), Gaps = 79/189 (41%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG + ++G SGSGK+TLL+ALS+RLA +A G Y +D L
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDA-----------------GEVHYRMRDGQLR 73
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL--QDCAD-------------- 184
+ +E+R L+ RT E G Q D
Sbjct: 74 DLYA----------------LSEAERRRLL-RT--EWGFVHQHPRDGLRMQVSAGGNIGE 114
Query: 185 --TVIGNWHLRGI-------------------------SGGERRRVSIALEILMRPRLLF 217
+G H I SGG ++R+ IA ++ PRL+F
Sbjct: 115 RLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174
Query: 218 LDEPTSGLD 226
+DEPT GLD
Sbjct: 175 MDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 4e-12
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKLSFGTAAY----------- 132
ALMGPSG GKSTLL + L N A + G + L FG Y
Sbjct: 34 ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL--------FGRNIYSPDVDPIEVRR 85
Query: 133 ----VTQDDNLIGTLTVRETISYSARL--------RLPDKMPWS-EKRTLVERTIIEMGL 179
V Q N LT+ + ++ +L L +++ W+ +K L + ++ L
Sbjct: 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE--VKDRL 143
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
D N +SGG+R+R+ IA + M+P++L +DEPT+ +D + + L
Sbjct: 144 NDYP----SN-----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 240 LSRDGRTVIASIHQP--SSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L ++ T++ H P ++ V + LYL GK + G T FE
Sbjct: 195 LKKE-YTIVLVTHSPAQAARVSDYVAFLYL---GKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 13/212 (6%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125
++ VL L +PG ++GPSGSGKSTL L RL G +L++G +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTL-TKLLQRL--YTPQHGQVLVDGVDLAIA 524
Query: 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
V +N++ + ++R+ I+ + + + K I E L
Sbjct: 525 DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE--LPQG 582
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
+T +G +SGG+R+R++IA ++ PR+L DE TS LD + + + +R + R
Sbjct: 583 YNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR 641
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
GRTVI H+ S+ DR+ +L G+
Sbjct: 642 -GRTVIIIAHRLST--VRACDRIIVLEKGQIA 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 4e-12
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 27/227 (11%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGT 129
L+G+ +TAL+GPSG GKST L L+ + L ++G + L G +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI---YAP 77
Query: 130 AAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
V Q +G + ++ E + Y RL +K L E +E L+
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLA-----GVKDKAVLDE--AVETSLK 130
Query: 181 DCA--DTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
A D V + H +S GG+++RV IA + ++P ++ LDEPTS LD ++ +
Sbjct: 131 QAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM 190
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
L L RD T+I H + + D+ G + F +T F
Sbjct: 191 LLEL-RDQYTIILVTHS-MHQASRISDKTAFFLTGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 38/197 (19%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA 130
L L+ Y +PG L ++GP+G+GK+T++D ++ + + G++L G T L
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLP---- 70
Query: 131 AYVTQDDNL-IG----------TLTVRETISYSARLRLPDKMPWS--------EKRTLVE 171
Q IG LTV E + + DK ++ E++ +E
Sbjct: 71 --EHQIARAGIGRKFQKPTVFENLTVFENLELALP---RDKSVFASLFFRLSAEEKDRIE 125
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ +GL D AD + G +S G+++ + I + ++ P+LL LDEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180
Query: 232 FVTQTLRCLSRDGRTVI 248
+ L+ L+ +V+
Sbjct: 181 KTAELLKSLAGK-HSVV 196
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-12
Identities = 62/211 (29%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTILLNGHKTKLSF---GTAAYVTQDD 137
G + AL+G SGSGKS A+ L SG ILL+G A + Q
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ-- 69
Query: 138 NLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
N T+ A LR K + R L+ + +GL D + + + +
Sbjct: 70 NPRTAFNPLFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEE--VLKKYPFQL 126
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255
SGG +RV IAL +L+ P L DEPT+ LD V + LR L + T I I
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 256 SEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
V + D + ++ G+ V E E F
Sbjct: 187 GVVARIADEVAVMDDGRIV---ERGTVKEIF 214
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA- 130
L+ ++ G A++G +GSGKSTL L+ L +GTI + G LS T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGG--MVLSEETVW 77
Query: 131 ------AYVTQ--DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
V Q D+ +G TV++ +++ +P E V++ + ++G++D
Sbjct: 78 DVRRQVGMVFQNPDNQFVGA-TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDF 133
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
+ L SGG+++RV+IA + ++P ++ LDE TS LD V +T+R L
Sbjct: 134 LNREPH--RL---SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ SI E + DR+ +++ G+ + G F+
Sbjct: 189 QKGITVLSITHDLDEAAQA-DRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAAY--VTQDDN 138
G L+GPSG GK+TLL ++ A GTI G T+L Y V Q
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQKRDYGIVFQSYA 86
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISG 197
L LTV + I+Y + R M +E V ++++ GL G +SG
Sbjct: 87 LFPNLTVADNIAYGLKNR---GMGRAEVAERV-AELLDLVGLPGSERKYPGQ-----LSG 137
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS 256
G+++RV++A + P LL LDEP S LD+ + +R L R G T I H
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD-QE 196
Query: 257 EVFELFDRLYLLSGGKTVYFG 277
E + DR+ +++ G G
Sbjct: 197 EALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-12
Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 23/205 (11%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++ GE L+ G + GP+G+GK+TLL L+ L +G +
Sbjct: 5 AENLSCERGERTL-FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP---DAGEVY 60
Query: 118 LNGHKTKLSFGTAA----YVTQDDNLIGTLTVRETISYSARL--RLPDKMPWSEKRTLVE 171
G + + Y+ + LT E + + R W E V
Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW-EALAQV- 118
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
GL D +G +S G++RRV++A L L LDEP + LD
Sbjct: 119 ------GLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
Query: 232 FVTQTLRCLSRDGRTVIASIHQPSS 256
+T + + G V+ + HQP
Sbjct: 168 LLTALMAAHAAQGGIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 7e-12
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 25/238 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILL 118
V + G+ V + + + GT+ AL+GPSG GK+T L A++ L A ++G ILL
Sbjct: 10 VNIYYGDKQAV-KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68
Query: 119 NGHKTKLSFGTA----------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
+G +G V Q N T++V + + A L+L
Sbjct: 69 DGQDI---YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLME 123
Query: 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+ ER++ L D + G+SGG+++R+ IA + + P +L +DEPTS LD A
Sbjct: 124 VAERSLRGAALWDEVKDRL-KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182
Query: 229 AAFFVTQTLRCLSRDGRTVIAS--IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + L + +I + +HQ + + D G V G T F
Sbjct: 183 STARIEDLMTDLKKVTTIIIVTHNMHQAA----RVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-12
Identities = 70/259 (27%), Positives = 107/259 (41%), Gaps = 48/259 (18%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L KDL V + +G+ V L G ++G SGSGKS AL LA+N
Sbjct: 13 LDVKDLRVTFSTPDGDVTAV-NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 71
Query: 112 LSGTILLNGHK---------TKLSFGTAAYVTQD------------DNLIGTLTVRETIS 150
+ G+ NG + KL + + QD + L+ L + + +S
Sbjct: 72 IGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 131
Query: 151 ----YSARLRLPD--KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204
+ +R+ D KMP + KR M + + SGG R+RV
Sbjct: 132 KAEAFEESVRMLDAVKMPEARKR---------MKM-----------YPHEFSGGMRQRVM 171
Query: 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264
IA+ +L RP+LL DEPT+ LD + L L R+ T I I V + D+
Sbjct: 172 IAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK 231
Query: 265 LYLLSGGKTVYFGETSAAF 283
+ ++ G+T+ +G F
Sbjct: 232 VLVMYAGRTMEYGNARDVF 250
|
Length = 330 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 9e-12
Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGH-- 121
+L L+ EPG +TAL+G +G+GKSTLL AL+ L A ++G + LNG
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 122 ----KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+L+ A + Q + RE + R P R T +
Sbjct: 74 AAIDAPRLA-RLRAVLPQAAQPAFAFSAREIVLLG---RYP------HARRAGALTHRDG 123
Query: 178 GLQDCADTVIGNWHLRG-----ISGGERRRVSIALEILMR----------PRLLFLDEPT 222
+ A + G L G +SGGE RV A +L + PR L LDEPT
Sbjct: 124 EIAWQALALAGATALVGRDVTTLSGGELARVQFA-RVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 223 SGLDSAAAFFVTQTLRCLSRDGRT-VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ LD A + T+R L+RD V+A +H P+ DR+ +L+ G V G
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 33/226 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ ++ E G + ++GPSG+GKSTL+ L +RL G+IL++G K
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPT--EGSILIDGVDIK-----T 69
Query: 131 AYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
V IG + TV++ I Y L+ EK VE + +GL
Sbjct: 70 IDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLK-------GEKNVDVEYYLSIVGL-- 120
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL- 240
+ ++ +SGGE +RVSIA + P +L LDEPTS LD + + + + L
Sbjct: 121 --NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
++ TVI H + + D L+ G V + +T ++FF
Sbjct: 179 NKMNLTVIWITHN-MEQAKRIGDYTAFLNKGILVEYAKT---YDFF 220
|
Length = 241 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 1e-11
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
+T+LMGP+GSGK+T L L+ + S SG +LL G S V + +G
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR----SIFNYRDVLEFRRRVG 104
Query: 142 TLTVRETI-------SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
L R + A +R +P E R + + + E+GL D + + R
Sbjct: 105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR- 163
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGG+++ + +A + + P +L LDEPTS LD + + +R L+ D TVI H
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHN- 221
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ + DR L G+ V G T F
Sbjct: 222 LAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 43/260 (16%)
Query: 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RL 106
+ R+ KDL + G H V E + EP ++TA +GPSG GKST+L L+ +
Sbjct: 2 AKRIDVKDLNIYY----GSFHAV-EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56
Query: 107 ASNAFLSGTILLNGHKTKLSFG----------TAAYVTQDDNLIGTLTVRETISYSARLR 156
A + G +LL+G +G T V Q N T+++R+ + A L+
Sbjct: 57 IPGARVEGEVLLDGEDL---YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLK 111
Query: 157 LPDKMPWSEKRTLVERTIIEMGL----QDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
L + LVE+++ L +D D G G+SGG+++R+ IA I +
Sbjct: 112 LNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG-----GLSGGQQQRLCIARAIAVE 166
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDR--LYLL 268
P +L +DEP S LD + + + L +D VI + H Q ++ V D+ + L
Sbjct: 167 PDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT-HNMQQAARV---SDQTAFFNL 222
Query: 269 SG----GKTVYFGETSAAFE 284
G+ V +T F
Sbjct: 223 EATGKPGRLVEIDDTEKIFS 242
|
Length = 258 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG---HKTKLSFGT----AAYVT 134
+TAL+GPSG GKST L L+ + L A + G ILL+G + + V
Sbjct: 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVF 93
Query: 135 QDDNLIGTLTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q N ++ E ++Y R+ + DK +E+ VER++ L D + L
Sbjct: 94 QKPNPFPK-SIFENVAYGLRVNGVKDKAYLAER---VERSLRHAALWDEVKDRLHESAL- 148
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 252
G+SGG+++R+ IA + + P +L +DEP S LD A + + + L T+I H
Sbjct: 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHN 207
Query: 253 -QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
Q ++ V ++ Y+ GK + G T F
Sbjct: 208 MQQAARVSDVTAFFYM---GKLIEVGPTEQIF 236
|
Length = 253 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT----AAYVT 134
G + GPSG GKSTLL ++S ++ SGT+L G + L +Y
Sbjct: 31 RAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCA 87
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHL 192
Q L G TV + + PW + + I L+ DT++ ++
Sbjct: 88 QTPTLFGD-TVYDNL----------IFPWQIRNQQPDPAIFLDDLERFALPDTIL-TKNI 135
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGGE++R+S+ + P++L LDE TS LD
Sbjct: 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-11
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTIL 117
V LS G + L G++ E LTAL+GPSG GKST L L+ R+ N ++G I
Sbjct: 10 VHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIK 67
Query: 118 LNGHKTKLSFGTAAYVTQDDNLIGT------LTVRETISYSARLR-LPDKMPWSEKRTLV 170
G S + ++ ++ +V + ++Y ++ + DK ++ V
Sbjct: 68 FEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR---V 124
Query: 171 ERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
E ++ + + ++ D + + + + SGG+++R+ IA + +RP+++ LDEPTS LD +
Sbjct: 125 EESLKQAAIWKETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + +TL L T I H + + D+ L G + G T F
Sbjct: 183 SSEIEETLMELKHQ-YTFIMVTHN-LQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 74/267 (27%), Positives = 122/267 (45%), Gaps = 41/267 (15%)
Query: 36 WKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGK 95
W E+ F + A L+ KDL V G+ ++G+ E +TAL+GPSGSGK
Sbjct: 6 WNERHIITFPEEEIA-LSTKDLHVYY----GKKE-AIKGIDMQFEKNKITALIGPSGSGK 59
Query: 96 STLLDALSSRL---ASNAFLSGTILLNG----------HKTKLSFGTAAYVTQDDNLIGT 142
ST L +L+ R+ A ++G IL G ++ + G V Q N
Sbjct: 60 STYLRSLN-RMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGM---VFQRPNPF-A 114
Query: 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGNWHLRG--ISGG 198
++ E I+++ +K+ L E I+E L+ A D V + H +SGG
Sbjct: 115 KSIYENITFALERA-----GVKDKKVLDE--IVETSLKQAALWDQVKDDLHKSALTLSGG 167
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSS 256
+++R+ IA I ++P +L +DEP S LD + + +T+ L + T+I H Q ++
Sbjct: 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAA 226
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAF 283
+ YL G + + +T F
Sbjct: 227 RASDYTAFFYL---GDLIEYDKTRNIF 250
|
Length = 267 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 67/217 (30%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLA-----------SNAFLSGTILLNGHKTKLSFGT 129
PG + ++G SGSGKSTLL L+ RLA S A L L + +L
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 130 AAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTL----VERTIIEMGLQDCA 183
+V Q+ D L + V + RL + R +E I+ D
Sbjct: 88 WGFVHQNPRDGL--RMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDL 145
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
R SGG ++R+ IA ++ RPRL+F+DEPT GLD + + LR L RD
Sbjct: 146 P--------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
G VI H L RL ++ G+ V G T
Sbjct: 198 LGLAVIIVTHDLGV-ARLLAQRLLVMQQGRVVESGLT 233
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 66/228 (28%), Positives = 98/228 (42%), Gaps = 47/228 (20%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
E G+ TA +G +GSGKST++ LLNG L T V DD L
Sbjct: 31 EDGSYTAFIGHTGSGKSTIMQ----------------LLNG----LHVPTQGSVRVDDTL 70
Query: 140 IGTLTVRETI-SYSARLRLPDKMPWSEKRTLVERTIIE---MGLQ-------DCADTVIG 188
I + + + I ++ L + P S+ L E T+++ G Q +
Sbjct: 71 ITSTSKNKDIKQIRKKVGLVFQFPESQ---LFEETVLKDVAFGPQNFGVSQEEAEALARE 127
Query: 189 NWHLRGI------------SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
L GI SGG+ RRV+IA + M P++L LDEPT+GLD +
Sbjct: 128 KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ L + G T++ H +V D +Y+L GK V G+ F+
Sbjct: 188 FKKLHQSGMTIVLVTHL-MDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
Length = 280 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA-------AY 132
G L+G SGSGKSTL AL + S G I +G LS
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQV 367
Query: 133 VTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V QD L +TV + I R+ P K+ +E+ V + E+GL D N
Sbjct: 368 VFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGL----DPATRNR 422
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ SGG+R+R++IA ++++P L+ LDEPTS LD + V LR L +
Sbjct: 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF 482
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
I + V L R+ ++ GK V G T A F
Sbjct: 483 ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 22/224 (9%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT-------AAYVT 134
G+ TAL+G +GSGKST+ ++ L + + I ++G L+ T V
Sbjct: 33 GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG--ITLTAKTVWDIREKVGIVF 90
Query: 135 QD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q+ DN TV + +++ R +P E +V + ++G+ D D+ N
Sbjct: 91 QNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPAN---- 143
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
+SGG+++RV+IA + + P+++ LDE TS LD A + + +R L + + SI
Sbjct: 144 -LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCP 294
E + D++ +L GK + G F E + G P
Sbjct: 203 DIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIP 245
|
Length = 282 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 3e-11
Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 26/235 (11%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG---H 121
+T +LEG++ +TA++GPSG GKST L L+ + L S + G + +
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77
Query: 122 KTKLSFG----TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
+ +++ + V NL ++V + ++Y ++ + W K + I+E
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLF-PMSVYDNVAYGVKI-----VGWRPKLEI--DDIVES 129
Query: 178 GLQDCA--DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
L+D D + H + SGG+++R+ IA + ++P++L +DEP GLD A+ V
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAF 283
++ L + + +V L D G G+ V FG T F
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244
|
Length = 261 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 35/234 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGT--------AAY 132
G + +MG SGSGKSTL+ L+ RL G IL++G KLS +
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLN-RL--IEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
V Q L+ TV E +++ ++ +P +E+ + +GL+ AD
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNE--- 164
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASI 251
+SGG ++RV +A + P +L +DE S LD + L ++ +T++
Sbjct: 165 --LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
H E + DR+ ++ G+ V Q G P L NP++ ++R
Sbjct: 223 HD-LDEALRIGDRIAIMKDGEIV-------------QVGTPEEILLNPANDYVR 262
|
Length = 386 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 4e-11
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 35/223 (15%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD 137
E +TAL+GPSG GKST L +++ + L +A G IL G + D
Sbjct: 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG------------LNILD 92
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWS-------------EKRTLVERTIIEMGLQDCA- 183
+ I + +R I + P+ P S E+R V I+E L A
Sbjct: 93 SNINVVNLRREIGMV--FQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL 150
Query: 184 -DTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
D V H +S GG+++R+ IA + M+P +L LDEP S LD + + + + L
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ +I + + + DR G V + +T F
Sbjct: 211 KEEYSIIIVT--HNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG--------TAAYVTQDD 137
+MG SGSGKSTLL ++ RL SG +L++G +S + V Q
Sbjct: 55 IMGLSGSGKSTLLRCIN-RLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
L+ TV E +++ ++ +P +E+ + +GL+ +SG
Sbjct: 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSG 163
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS 256
G ++RV +A + + P +L +DE S LD + L L + +T++ H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-D 222
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVK 315
E L DR+ ++ G+ V Q G P L NP++ ++R D+ K
Sbjct: 223 EALRLGDRIAIMKDGRLV-------------QVGTPEEILTNPANDYVREFFRGVDRAK 268
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 87 LMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145
++G SGSGKSTL+ + + S + + G K ++ L
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKEL-- 114
Query: 146 RETISYSARLRLPD-------------------KMPWSEKRTLVERTIIEMGLQDCADTV 186
R +S + P+ + SE + L + + +MGL D
Sbjct: 115 RRRVSMV--FQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----- 167
Query: 187 IGNWHLR---GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
++ R G+SGG++RRV+IA + ++P +L DEPT+GLD + Q + +
Sbjct: 168 --SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN 225
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+TV H V E+ D + ++ GK + G
Sbjct: 226 NKTVFVITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 6e-11
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 23/228 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILL---NGHKT 123
H VL+ + +TA++GPSG GKSTLL AL+ + + S A L G +LL N +
Sbjct: 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76
Query: 124 KLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
L V Q N ++ + +++ R+ + + + L E ++E L
Sbjct: 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRM-----LGTTAQSRLDE--VVEKSL 128
Query: 180 QDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+ A D V N H G +SGG+++R+ IA + + P ++ +DEP S LD + + +
Sbjct: 129 RQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ L ++ IA + + D L G V +G T F
Sbjct: 189 LMQELKQN--YTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-11
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 59 VMVTLSNGETH----NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
VM++ H L ++ + G + L+G +G+GK+TLL L + SG
Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SG 60
Query: 115 TILLNGHKTKLSFGTA-------AYVTQDDNLIGTLTVRETIS----------YSARL-R 156
I+ +G K + TA A V + + +TV E ++ + R+
Sbjct: 61 RIVFDG-KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW 119
Query: 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216
+ + P L ER I G +SGGE++ ++I ++ +PRLL
Sbjct: 120 VYELFP-----RLHERRIQRAGT---------------MSGGEQQMLAIGRALMSQPRLL 159
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
LDEP+ GL + T+ L G T+ + Q +++ +L DR Y+L G V
Sbjct: 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 30/242 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILL 118
V+ S G N+L ++ + + T ++G SGSGKSTL ++L F SG ILL
Sbjct: 479 VSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTL-----AKLLVGFFQARSGEILL 533
Query: 119 NGH------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
NG + L Y+ Q+ I + ++ E + A+ + W+ +
Sbjct: 534 NGFSLKDIDRHTLR-QFINYLPQEP-YIFSGSILENLLLGAKENVSQDEIWAACEIAEIK 591
Query: 173 TIIE---MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
IE +G Q T + ISGG+++R+++A +L ++L LDE TS LD+
Sbjct: 592 DDIENMPLGYQ----TELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ L L+ +T+I H+ S V + D++ +L GK + E + E +
Sbjct: 647 EKKIVNNL--LNLQDKTIIFVAHRLS--VAKQSDKIIVLDHGKII---EQGSHDELLDRN 699
Query: 290 GF 291
GF
Sbjct: 700 GF 701
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-11
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 53/231 (22%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125
V+E ++ G + L+GP+G+GK+T + + +A G I+++ L
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74
Query: 126 -SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
+ Y+ Q+ DNL+ L +R+ +S +E+R
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLS-------------AEQR------- 114
Query: 175 IEMGLQDCADTVIGNWHL--------RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+D A+ ++ +H+ + +SGGERRRV IA + P+ + LDEP +G+D
Sbjct: 115 -----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + + + L G V+ + H E + +R Y++S G + G
Sbjct: 170 PISVIDIKRIIEHLRDSGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 8e-11
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTK 124
+ ++L+ + ++TAL+GPSG GKST + L+ + L G I L+G
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG---V 70
Query: 125 LSFGTAAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+ A V + +G + ++ + ++Y R+ D + E+R VE ++
Sbjct: 71 DIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER--VEESLK 128
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
L D + L G+SGG+++R+ IA I + P ++ +DEP S LD + +
Sbjct: 129 AAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187
Query: 236 TLRCLSRDGRTVIAS 250
+ L D VI +
Sbjct: 188 LIHKLKEDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 8e-11
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
+TA++GPSG GKST L A++ + L + +G ++ +G F + + IG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK---IG 123
Query: 142 TL---------TVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNW 190
+ ++ + I+Y RL + DK E +VE+++ + L D +D + N
Sbjct: 124 MVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEE---IVEKSLRKAALWDEVSDRLDKN- 179
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
G+SGG+++R+ +A + + P +L LDEPTS LD A
Sbjct: 180 -ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217
|
Length = 286 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 8e-11
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 31/202 (15%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKT 123
H L +T G L+GPSG+GKS+LL L+ L SGT+ + G+
Sbjct: 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-------LLEMPRSGTLNIAGNHF 66
Query: 124 KLSFGTAA-----------YVTQDDNLIGTLTVRET-ISYSARLRLPDKMPWSEKRTLVE 171
S + V Q NL LTV++ I R+ K + E
Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSK---DQALARAE 123
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ + + L+ AD + L +SGG+++RV+IA ++M P++L DEPT+ LD
Sbjct: 124 KLLERLRLKPYAD----RFPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
Query: 232 FVTQTLRCLSRDGRTVIASIHQ 253
+ +R L+ G T + H+
Sbjct: 179 QIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 33/185 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G +TAL+GPSG GKST+L +L+ + L L G +L +G T Y + D +
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG--------TDLYDPRVDPV 90
Query: 140 -----IGTL---------TVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQD-CA 183
IG + ++ E I++ AR+ M LVER++ + + D C
Sbjct: 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDM-----DELVERSLRKAAVWDECK 145
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
D + N +SGG+++R+ IA I + P ++ +DEP S LD + + +T+ L ++
Sbjct: 146 DKL--NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN 203
Query: 244 GRTVI 248
VI
Sbjct: 204 FTIVI 208
|
Length = 269 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 1e-10
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 83 TLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
++TAL+GPSG GKST + L+ + L N + G + + G + V + +
Sbjct: 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI---YEPDVDVVELRKNV 95
Query: 141 GT---------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
G +++ + ++Y R+ +K + +VE + L D + +
Sbjct: 96 GMVFQKPNPFPMSIYDNVAYGPRIHGANK---KDLDGVVENALRSAALWDETSDRLKSPA 152
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
L +SGG+++R+ IA + ++P+++ DEPTS LD + + + L +D VI +
Sbjct: 153 L-SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTH 211
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + +L+ G+ + FG+T F
Sbjct: 212 NMQQAARISDYTGFFLM--GELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------- 121
+ V++ ++ PG L+G SGSGKST AL + S G I +G
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS----QGEIWFDGQPLHNLNR 354
Query: 122 KTKLSFGTAAYVT-QDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
+ L V QD N L L V + I R+ P + +++ V + E+G
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT-LSAAQREQQVIAVMEEVG 413
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L D + + SGG+R+R++IA ++++P L+ LDEPTS LD
Sbjct: 414 L----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 27/152 (17%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHK-TKLS-----FGTAAYVT 134
LT L+GPSG GK+T+L RL + F SG I+L+G T + T V
Sbjct: 43 LT-LLGPSGCGKTTVL-----RLIA-GFETPDSGRIMLDGQDITHVPAENRHVNT---VF 92
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
Q L +TV E +++ R++ K P +E V + + L++ A
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQ----- 144
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGG+++RV+IA ++ +P++L LDE S LD
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 1e-10
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 22/230 (9%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKT 123
G+ H L+G++ E ++ A +GPSG GKST L + + L L G I ++G
Sbjct: 14 GDFH-ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72
Query: 124 KLSFGTAAYVTQDDNLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTI 174
+ V + +G + ++ E ++Y R+ + +R VE T+
Sbjct: 73 ---YDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR--VEETL 127
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
L D + +SGG+++R+ IA + + P +L +DEP S LD + V
Sbjct: 128 KGAALWDEVKDKLKESAF-ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE 186
Query: 235 QTLRCLSRDGRTVIASIH-QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + L +D VI + + Q ++ V + Y+ G+ V + +T F
Sbjct: 187 ELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM---GEMVEYDDTKKIF 233
|
Length = 250 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 55/247 (22%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTI--LLNGHKTK 124
L+ ++ G A++G +GSGK+T ++ L NA L +GTI + K K
Sbjct: 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHL------NALLLPDTGTIEWIFKDEKNK 74
Query: 125 LSFGTAAYVTQDDNL-----------------IGTL-----------TVRETISYSARLR 156
V + + +G + T+ + I +
Sbjct: 75 KKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM 134
Query: 157 LPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLR---GISGGERRRVSIALEILMR 212
K ++KR IE+ GL + ++ R +SGG++RRV++A + M
Sbjct: 135 GVSKEE-AKKRA---AKYIELVGLDE-------SYLQRSPFELSGGQKRRVALAGILAME 183
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P L DEPT+GLD + + L++ G+T+I H + V E R GK
Sbjct: 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN-VLEWTKRTIFFKDGK 242
Query: 273 TVYFGET 279
+ G+T
Sbjct: 243 IIKDGDT 249
|
Length = 305 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 39/223 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-----HKTKLS-------- 126
E G L+G +GSGKSTL+ L+ L SG I+++G K KLS
Sbjct: 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGL 87
Query: 127 -FGTAAYVTQDDNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERTIIEMGL--QDC 182
F Y ++ T+ + I++ L L + E V+R + +GL +D
Sbjct: 88 VFQYPEYQLFEE------TIEKDIAFGPINLGLSE----EEIENRVKRAMNIVGLDYEDY 137
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D +SGG++RRV+IA + M P++L LDEPT+GLD + ++ L +
Sbjct: 138 KDKSPFE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192
Query: 243 D-GRTVIASIHQPSSE-VFELFDRLYLLSGGKTVYFGETSAAF 283
+ T+I H S E V +L DR+ +++ GK G F
Sbjct: 193 EYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
Length = 287 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG 128
+VL ++ G + A++G SGSGKSTLL L + SG ++ NG +KLS
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG---GLDTPTSGDVIFNGQPMSKLSSA 79
Query: 129 TAA--------YVTQDDNLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEM 177
A ++ Q +L+ T E ++ MP +K + +EM
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVA----------MPLLIGKKKPAEINSRALEM 129
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L N +SGGER+RV+IA ++ PRL+ DEPT LD+ A + Q L
Sbjct: 130 -LAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
Query: 238 RCLSR 242
L+R
Sbjct: 189 GELNR 193
|
Length = 233 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 35/200 (17%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L L+ +PG L L+GP+G+GK+TL+D ++ + G +L +G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPEHR 77
Query: 132 YVT-------QDDNLIGTLTVRETI------------SYSARLRLPDKMPWSEKRTLVER 172
Q + LTVRE + S ARLR +E+R ++
Sbjct: 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-------AEERRRIDE 130
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232
+ +GL D D + +S G+++ + I + + P+LL LDEP +G+ A
Sbjct: 131 LLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
Query: 233 VTQTLRCLSRDGRTVIASIH 252
+ L+ L+ +++ H
Sbjct: 186 TAELLKSLAG-KHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTL---LDALSSRLASNAFLSGTIL--LNGHKTKL 125
VL ++ E G L+G SG GKSTL L L G L L+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
V QD + R T+ LR + SE++ + + +GL+
Sbjct: 86 FRRDVQLVFQDS--PSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-- 141
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ R +SGG+ +R++IA + ++P+L+ LDE S LD + + LR L +
Sbjct: 142 --EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
T I V R+ ++ G+ V
Sbjct: 200 FGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 18/212 (8%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNG-------HKTKLSFGTAAYVT 134
+TA +GPSG GKST L + + N + G + ++G L V
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVF 92
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHL 192
Q N ++ + ++Y +L + ++K+ +VE+++ +GL + + +
Sbjct: 93 QKPNPFPK-SIYDNVAYGPKLH---GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAF 148
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGG+++R+ IA I ++P +L +DEP S LD A + ++ L ++ T+I H
Sbjct: 149 E-LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTH 206
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ ++ DR+ G+ V + T F+
Sbjct: 207 S-MKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKLSFGTA-AYV 133
A+ G A++GP+G+GK+TL++ L G IL++G T+ S + A V
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATV 414
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
QD L ++RE I R D+ + + I DT++G R
Sbjct: 415 FQDAGLFNR-SIRENIRL-GREGATDEEVYEAAKAAAAHDFILKRSNG-YDTLVGE---R 468
Query: 194 G--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
G +SGGER+R++IA IL +L LDE TS LD V + L ++ T I
Sbjct: 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFI 525
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 39/240 (16%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGH--------KT--KLS 126
E G + LMG SGSGKSTLL A+ + L N G++L+ +G T +L
Sbjct: 48 EEGEICVLMGLSGSGKSTLLRAV-NGL--NPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+ V Q L+ TV E +++ ++ MP +E+R V+ + +GL AD
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADRK 161
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGR 245
G +SGG ++RV +A +L +DEP S LD + L S+ +
Sbjct: 162 PGE-----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK 216
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
T++ H E ++ +R+ ++ GG+ + Q G P + NP++ ++
Sbjct: 217 TIVFVSHD-LDEALKIGNRIAIMEGGRII-------------QHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASN--AF-LSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
+TA++GPSG GK+TLL +++ R+ + F + G I G + + VT+ +
Sbjct: 31 ITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKG---QDIYDPQLDVTEYRKKV 86
Query: 141 GT---------LTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
G +++ + +++ R+ + K +VE ++ + L D + + N
Sbjct: 87 GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDR---IVEESLKKAALWDEVKSEL-NK 142
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGG+++R+ IA + + P ++ LDEPTS LD A + + L LS + VI +
Sbjct: 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ + D + + G+ + +G T
Sbjct: 203 --HNIGQAIRIADYIAFMYRGELIEYGPTR 230
|
Length = 250 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 38/224 (16%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-------- 121
VL+ ++ +PG ++G +GSGKS+LL AL RL + SG+IL++G
Sbjct: 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELS--SGSILIDGVDISKIGLH 74
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETI----SYSARLRLPDKMPWS--EKRTLVERT 173
++++S + QD L + T+R + YS D+ W E+ L E
Sbjct: 75 DLRSRISI-----IPQDPVLF-SGTIRSNLDPFGEYS------DEELWQALERVGLKEFV 122
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
G D G +S G+R+ + +A +L + ++L LDE T+ +D +
Sbjct: 123 ESLPGGLDTVVEEGGE----NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+T+R + TV+ H+ + + + DR+ +L G+ V F
Sbjct: 179 QKTIR-EAFKDCTVLTIAHRLDT-IID-SDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-10
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 33/196 (16%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTA 130
L+G+T + PG + L G SG+GKSTLL + +A G I +GH T+L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74
Query: 131 AY-------VTQDDNLIGTLTVRETISYSARLRLPDKMPW-------SEKRTLVERTIIE 176
+ + QD +L+ TV + ++ +P + R V + +
Sbjct: 75 PFLRRQIGMIFQDHHLLMDRTVYDNVA----------IPLIIAGASGDDIRRRVSAALDK 124
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+GL D A N+ ++ +SGGE++RV IA ++ +P +L DEPT LD A + + +
Sbjct: 125 VGLLDKAK----NFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179
Query: 237 LRCLSRDGRTVIASIH 252
+R G TV+ + H
Sbjct: 180 FEEFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 43/239 (17%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNG--- 120
+ L ++ + + G +++G +GSGKST L+D L L + SG I+++G
Sbjct: 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL---LEAE---SGQIIIDGDLL 71
Query: 121 ---------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLV 170
HK + F D+ +G TV + +++ L +K +P E + V
Sbjct: 72 TEENVWDIRHKIGMVFQNP-----DNQFVGA-TVEDDVAFG----LENKGIPHEEMKERV 121
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ +G+QD + +SGG+++RV+IA + MRP+++ LDE TS LD
Sbjct: 122 NEALELVGMQDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 231 FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+ +T++ + D TVI SI EV L DR+ ++ G+ TS E F++
Sbjct: 177 LELIKTIKGIRDDYQMTVI-SITHDLDEV-ALSDRVLVMKNGQV---ESTSTPRELFSR 230
|
Length = 279 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 24/218 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG 128
VL+G+ G + AL+G +G+GKSTL+ ++ + + SGT+ + G+ +L+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPA 81
Query: 129 TA----AY-VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Y V Q+ L L+V+E I + LP + +K +++ + +G Q
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK---MKQLLAALGCQLDL 134
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D+ G+ + +R+ V I L LMR R+L LDEPT+ L A + +R L
Sbjct: 135 DSSAGSLEV-----ADRQIVEI-LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
G ++ H+ E+ +L DR+ ++ G G+T+
Sbjct: 189 QGVGIVFISHK-LPEIRQLADRISVMRDGTIALSGKTA 225
|
Length = 510 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGH 121
L+ + + G ++G +GSGKST+ + NA L G + ++G
Sbjct: 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHM------NALLIPSEGKVYVDGL 72
Query: 122 KTKLSFGT------AAYVTQD-DNLIGTLTVRETISYSARLRLPDKM--PWSEKRTLVER 172
T A V Q+ DN I V E +++ P+ + P E R V+
Sbjct: 73 DTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGIPPEEIRERVDE 127
Query: 173 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232
++ ++G+ + HL +SGG+++RV+IA + MRP + DEPT+ LD +
Sbjct: 128 SLKKVGMYEYRRHAP---HL--LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182
Query: 233 VTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
V T++ L++ G T+I H E E DR+ ++ GK V G
Sbjct: 183 VVNTIKELNKKYGITIILITHY-MEEAVEA-DRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-10
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 27/230 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGH---KT 123
H+ L+ + +TA++GPSG GKST + L+ ++ N L+G + NG K
Sbjct: 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84
Query: 124 KLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
K+ V Q N ++ + ++Y R+ K+ L E I+E L
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH-----GTKNKKKLQE--IVEKSL 136
Query: 180 QDCA--DTVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+D A D V H + +SGG+++R+ IA + P +L +DEPTS LD + + +
Sbjct: 137 KDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196
Query: 236 TLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ L ++ T++ H Q ++ V D+ G+ V +T+ F
Sbjct: 197 LILKL-KEKYTIVIVTHNMQQAARV---SDQTAFFYMGELVECNDTNKMF 242
|
Length = 259 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 66/223 (29%), Positives = 98/223 (43%), Gaps = 45/223 (20%)
Query: 85 TALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142
TA +GPSG GKSTLL + + L N + G I L+G Y + D +
Sbjct: 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI--------YDKKVD--VAE 103
Query: 143 LTVR----------------ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--D 184
L R E + Y RL+ + +R L E +E L+ A D
Sbjct: 104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQ-----GINNRRVLDE--AVERSLRGAALWD 156
Query: 185 TVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
V H G+SGG+++R+ IA I + P +L LDEPTS LD + + + + L
Sbjct: 157 EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS 216
Query: 243 DGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
VI + H Q ++ V + +Y+ GK V +G+T F
Sbjct: 217 KYTIVIVT-HNMQQAARVSDYTAFMYM---GKLVEYGDTDTLF 255
|
Length = 272 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-10
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 19/226 (8%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
+T L ++ + G + ++G SG+GKSTL+ ++ SG+++++G T
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTT 71
Query: 125 LSFG--TAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
LS T A + Q NL+ + TV ++ L D P E + V + +
Sbjct: 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALV 128
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
GL D D+ N +SGG+++RV+IA + P++L DE TS LD A + + L
Sbjct: 129 GLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ ++R I I V + D + ++S G+ + G S F
Sbjct: 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 8e-10
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+S GER+ V IA + RLL LDEPT+ L A + + +R L G VI H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 255 SSEVFELFDRLYLLSGGKTV 274
EVFE+ DR+ +L G+ V
Sbjct: 143 -DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (143), Expect = 9e-10
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 45/225 (20%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G+ TAL+G +GSGKSTLL L+ L G + + D +
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVG----------------DIVVSS 72
Query: 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE----------MGLQDCADTVIGNWH 191
T +E ++ + + P S+ L E T+++ + +
Sbjct: 73 TSKQKEIKPVRKKVGVVFQFPESQ---LFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLE 129
Query: 192 LRGIS------------GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ G++ GG+ RRV+IA + M P +L LDEPT+GLD A + Q
Sbjct: 130 MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + G+TV+ H +V + D +YLL G + G S F+
Sbjct: 190 IHQSGQTVVLVTHL-MDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHK--TKLS 126
VL L + G A++G SG GKSTLL L+ +A L+GT L + T+L
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
F QD L+ V + + L K W R + + +GL D A
Sbjct: 87 F-------QDARLLPWKKVIDNVG------LGLKGQW---RDAALQALAAVGLADRA--- 127
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 245
W +SGG+++RV++A ++ RP LL LDEP LD+ + + L + G
Sbjct: 128 -NEWP-AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGK 272
TV+ H SE + DR+ L+ GK
Sbjct: 186 TVLLVTHD-VSEAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 26/233 (11%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL 125
T +EG++ +TA++GPSG GKST + L+ S L + G + G
Sbjct: 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI-- 76
Query: 126 SFGTAAYVTQDDNLIGT---------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + + IG +++ E ++Y +R+ K+P ++ +VE +
Sbjct: 77 -YDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKG 133
Query: 177 MGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
L Q+ D + N G+SGG+++R+ IA + ++P++L +DEP S LD A V +
Sbjct: 134 AALWQEVKDKL--NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEE 191
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAF 283
+ L + IA + + + D S G+ V FG T+ F
Sbjct: 192 LIHSLRSE--LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242
|
Length = 259 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 39/220 (17%)
Query: 85 TALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142
TA +GPSG GKSTLL + L G ILL+G QD L+
Sbjct: 42 TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP-------KQDIALLRA 94
Query: 143 -------------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVI 187
+++ + I++ +RL +K+ +E + ER +E L A + V
Sbjct: 95 KVGMVFQKPTPFPMSIYDNIAFG--VRLFEKLSRAE---MDER--VEWALTKAALWNEVK 147
Query: 188 GNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
H G +SGG+++R+ IA I +RP +L LDEP S LD + + + + L +D
Sbjct: 148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-Y 206
Query: 246 TVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
TV+ H Q ++ + +YL G+ + FG T F
Sbjct: 207 TVVIVTHNMQQAARCSDYTAFMYL---GELIEFGNTDTIF 243
|
Length = 260 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 42/245 (17%)
Query: 55 KDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
K+ +VM+ + N +N L+ ++ G A++G +GSGKST+ L+ L
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 109 NAFLSGTILLNGHKTKLSFGTAAYVTQ---------DDNLIGTLTVRETISYSARLRL-- 157
SG I ++G +S + + D+ IG TV + I++ +
Sbjct: 62 Q---SGEIKIDG--ITISKENLKEIRKKIGIIFQNPDNQFIG-ATVEDDIAFGLENKKVP 115
Query: 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR----GISGGERRRVSIALEILMRP 213
P KM + II+ D A V +L +SGG+++RV+IA + + P
Sbjct: 116 PKKM----------KDIID----DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
Query: 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273
++ DE TS LD + + + L + + + SI E L D++ + S GK
Sbjct: 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKL 220
Query: 274 VYFGE 278
+ G+
Sbjct: 221 IAQGK 225
|
Length = 271 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 25/195 (12%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KTKLSFGTAAYVTQDDNLIGTLT 144
L+G +G+GKSTLL L+ + SGT+ + G + L G LT
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLLGLGGG--------FNPELT 100
Query: 145 VRETISYSARLR-LPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRR 202
RE I + RL L K E ++ IIE L D D ++ S G + R
Sbjct: 101 GRENIYLNGRLLGLSRK----EIDEKIDE-IIEFSELGDFIDL-----PVKTYSSGMKAR 150
Query: 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262
++ A+ + P +L +DE + D+A + LR L + G+TVI H PSS + L
Sbjct: 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLC 209
Query: 263 DRLYLLSGGKTVYFG 277
DR +L GK + G
Sbjct: 210 DRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 38/218 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G ++G +GSGKSTL L+ L G +L++G T G + + L+G
Sbjct: 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDT----GDFSKLQGIRKLVG 80
Query: 142 TL-----------TVRETISYSARLRLPDKM--PWSEKRTLVERTIIEMGLQDCADTVIG 188
+ TV E +++ P+ + P E R V+R + E+GL
Sbjct: 81 IVFQNPETQFVGRTVEEDLAFG-----PENLCLPPIEIRKRVDRALAEIGL--------E 127
Query: 189 NWHLRG---ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ R +SGG+ + V++A + M P L DE TS LD + V + ++ L G+
Sbjct: 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
T++ H + E DR+ ++ GK V GE
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL------LDALSS---RLASN--AFL 112
S E VL+G++ G + A++G SGSGKSTL LD +S R+A A L
Sbjct: 16 SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL 75
Query: 113 SG---TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
L H FG ++ Q +L+ LT + + +P E++
Sbjct: 76 DADALAQLRREH-----FG---FIFQRYHLLSHLTAAQNV------EVPAVYAGLERKQR 121
Query: 170 VERTI---IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ R +GL+D + + +SGG+++RVSIA ++ +++ DEPT LD
Sbjct: 122 LLRAQELLQRLGLEDRVE-----YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 227 SAAAFFVTQTLRCLSRDGRTVIASIHQP 254
S + V L L G TVI H P
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 4e-09
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFG--------TA 130
E G + +MG SGSGKST++ L+ + G +L++G K+S
Sbjct: 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
A V Q L+ +TV + ++ L + E+R + ++GL++ A +
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYA-----HS 160
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG R+RV +A + + P +L +DE S LD + L L + I
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 305
I E + DR+ ++ G+ V Q G P L NP++ ++R
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 55/217 (25%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TK 124
H LE + +PG + + GP+GSGKSTLL +L R + G I + TK
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVS--EGDIRFHDIPLTK 381
Query: 125 LSF----GTAAYVTQ-----DDNLIGTLTV------RETISYSAR--------LRLPDKM 161
L A V+Q D + + + ++ I + AR LRLP
Sbjct: 382 LQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGY 441
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLD 219
DT +G RG+ SGG+++R+SIA +L+ +L LD
Sbjct: 442 ----------------------DTEVGE---RGVMLSGGQKQRISIARALLLNAEILILD 476
Query: 220 EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
+ S +D + LR +GRTVI S H+ S+
Sbjct: 477 DALSAVDGRTEHQILHNLR-QWGEGRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 38/195 (19%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKLSF--GTAAYVT 134
G AL+G SGSGKST+ + L+ + G ILL+GH L+ A V+
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVS 423
Query: 135 QDDNLIGTLTVRETISYSAR-----------LRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
Q+ +L T+ I+Y+ R+ M + K ++ GL
Sbjct: 424 QNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINK--------MDNGL---- 470
Query: 184 DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
DTVIG G+ SGG+R+R++IA +L +L LDE TS LD+ + + L L
Sbjct: 471 DTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 242 RDGRTVIASIHQPSS 256
++ RT + H+ S+
Sbjct: 528 KN-RTSLVIAHRLST 541
|
Length = 582 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G A++G +GSGKSTL L+ + SG +L++ H L FG +Y +Q +
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHP--LHFGDYSYRSQRIRM 91
Query: 140 I-----GTLTVRETIS--YSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWH 191
I +L R+ IS LRL + ++ + T+ ++GL D A +++
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----SYY 146
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
++ G+++R+ +A +++RP+++ DE + LD
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-09
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 20/160 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT- 129
V L + + G + G +G+GK+TLL L+ L SG I ++G +
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSR 82
Query: 130 -AAYVTQDDNLIGTLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
AY+ L L+ E + + L R +MP +V GL DT+
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP-GSALAIV-------GLAGYEDTL 134
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ R +S G+++R+++A L L LDEP + LD
Sbjct: 135 V-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 8e-09
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 84 LTALMGPSGSGKSTLL---DALSSRLASNAFLSGTILLNGHKTKLSFGT--------AAY 132
+TAL+GPSG GKST L + + N + IL + LS +
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISM 103
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
V Q N ++ E ++Y R+R + E+R VE + L D +G+
Sbjct: 104 VFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEER--VENALRNAALWDEVKDRLGDLAF 160
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGG+++R+ IA + P +L DEPTS LD A + + + L ++ T++ H
Sbjct: 161 -NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTH 218
Query: 253 --QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
Q ++ V + +Y+ G+ + FG T F
Sbjct: 219 NMQQAARVSDYTAYMYM---GELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 9e-09
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT------- 134
G +TA+MGPSG GK+TLL + ++A + G IL +G + Y
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSML 89
Query: 135 -QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q L + V + ++Y LR ++P + V + +GL+ A +
Sbjct: 90 FQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE---- 143
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGG RR ++A I + P L+ DEP G D
Sbjct: 144 -LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
Length = 269 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 9e-09
Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 31/233 (13%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
T +VL L + +TA +GPSG GKST L L+ N + GT H+ ++ F
Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL---NDLIEGT----SHEGEIYF 146
Query: 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLP------DKMPWSEK------RTLVERTI 174
GT + I +L +R I + P D + + + R ++E+ I
Sbjct: 147 LGTNTRSKK----ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK-I 201
Query: 175 IEMGLQDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+E L+ A D V + G +SGG+++R+ IA I + P +L +DEPTS LD A
Sbjct: 202 VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ + + L + +I + ++ + D G GET F
Sbjct: 262 AKIEELILELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGGER+RV IA+ +L RP LL DEPT+ LD + + Q LR L ++ + I
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 292
S V +L DR+ ++ G+ V E + A F+ P
Sbjct: 217 LSIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251
|
Length = 529 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 1e-08
Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 21/157 (13%)
Query: 83 TLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
++TAL+GPSG GKST L L+ + L + G ++ G K + + + I
Sbjct: 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG---KNIYSNNFDILELRRKI 90
Query: 141 GT---------LTVRETISYSARLR-LPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGN 189
G +++ + ISY ++ DK E +VE+++ + L + D + N
Sbjct: 91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDE---IVEQSLKKSALWNEVKDKL--N 145
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ +SGG+++R+ IA + + P ++ +DEPTS LD
Sbjct: 146 TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
|
Length = 254 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN---------GHKTKLSFGTAAY 132
G LT ++G G GKS+LL A+ + + L G + + + + AY
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEATRSRNRYSVAY 83
Query: 133 VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCAD------- 184
Q L+ TV E I++ + P++++R + + + LQ D
Sbjct: 84 AAQKPWLLNA-TVEENITFGS--------PFNKQRY---KAVTDACSLQPDIDLLPFGDQ 131
Query: 185 TVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT--LRCL 240
T IG RGI SGG+R+R+ +A + ++FLD+P S LD + + Q L+ L
Sbjct: 132 TEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 241 SRDGRTVIASIHQ 253
D RT++ H+
Sbjct: 189 QDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 53/260 (20%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L K+L V E +L+GL G + A+MGP+GSGKSTL ++ A
Sbjct: 8 LEIKNLHASV----NEN-EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-I 61
Query: 112 LSGTILLNGHKTK-------------LSFG---TAAYVTQDDNLIGTLTVRETISYSARL 155
L G IL G L+F V+ D L ++Y+++
Sbjct: 62 LEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFL--------RLAYNSKR 113
Query: 156 R---LPDKMPW------SEKRTLV--ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204
+ LP+ P +EK LV + + + + + G SGGE++R
Sbjct: 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE------------GFSGGEKKRNE 161
Query: 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264
I L+ L LDE SGLD A + + + L ++I H + D
Sbjct: 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDY 221
Query: 265 LYLLSGGKTVYFGETSAAFE 284
++++ GK + G+ A E
Sbjct: 222 VHVMQNGKIIKTGDAELAKE 241
|
Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 37/250 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTKLSFGTAAYVTQ 135
G + AL+GPSGSGK+TLL ++ SG I +G H G +V Q
Sbjct: 28 GQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVG---FVFQ 81
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV----IGNWH 191
L +TV + I++ + LP +R I+ + + V + + +
Sbjct: 82 HYALFRHMTVFDNIAFGLTV-LP-------RRERPNAAAIKAKVTQLLEMVQLAHLADRY 133
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++RV++A + + P++L LDEP LD+ + + LR L + + +
Sbjct: 134 PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV 193
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDF 311
E E+ DR+ ++S G QAG P R P+ F+ +
Sbjct: 194 THDQEEAMEVADRVVVMSQGN-------------IEQAGTPDQVWREPATRFVLEFMGEV 240
Query: 312 DKVKATLKGS 321
++++ T++G
Sbjct: 241 NRLQGTIRGG 250
|
Length = 353 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 50 ARLTWKDLTVMVTL--SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107
L +++ TL G VL ++ G L GPSGSGKSTLL +L +
Sbjct: 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL 62
Query: 108 SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR-ETISY-SARLRLPDKMPWSE 165
+ G IL+ + TA L VR TI Y S LR+ ++ +
Sbjct: 63 PD---EGQILVRHEGEWVDLVTAEPRE-------VLEVRRTTIGYVSQFLRVIPRVSALD 112
Query: 166 --KRTLVERTIIEMGLQDCADTVIGN-------WHL--RGISGGERRRVSIALEILMRPR 214
L+ R + + A ++ W L SGGE++RV+IA ++
Sbjct: 113 VVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP 172
Query: 215 LLFLDEPTSGLDSA 228
+L LDEPT+ LD+
Sbjct: 173 ILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-08
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 36/220 (16%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD---- 137
+TA++GPSG GKST L ++ + L A + G + G V D
Sbjct: 67 VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN----------VYDADVDPV 116
Query: 138 ---NLIGTL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
IG + ++ + ++Y L++ ++R VE ++ L D
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYG--LKIQGYDGDIDER--VEESLRRAALWDEVKD 172
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ + L +SGG+++R+ IA I P ++ +DEP S LD A + + L+ +
Sbjct: 173 QLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-Y 230
Query: 246 TVIASIHQPSSEVFELFDRL-YLLSGGKTVYFGETSAAFE 284
TV+ H + + D+ L+GG+ V F +T FE
Sbjct: 231 TVVIVTHN-MQQAARISDKTAVFLTGGELVEFDDTDKIFE 269
|
Length = 285 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 50/214 (23%)
Query: 85 TALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAA--------- 131
TA+ G SG+GK++L++A+S L+ G I+LNG + F
Sbjct: 27 TAIFGRSGAGKTSLINAISG-------LTRPQKGRIVLNGR---VLFDAEKGICLPPEKR 76
Query: 132 ---YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
YV QD L VR + Y M ++ +V IE
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMA----KSMV-AQFDKIVALLGIE------------ 119
Query: 189 NWHL-----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
L +SGGE++RV+I +L P LL +DEP + LD + L L+R+
Sbjct: 120 --PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
I + E+ L DR+ +L GK FG
Sbjct: 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 42/147 (28%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
+ G L+G SG GKSTL + L SG IL G
Sbjct: 37 KEGETLGLVGESGCGKSTLGRLIL-GL--EEPTSGEILFEGKDIT--------------- 78
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
K+ E+R V + ++GL + +SGG+
Sbjct: 79 --------------------KLSKEERRERVLELLEKVGL----PEEFLYRYPHELSGGQ 114
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLD 226
R+R+ IA + + P+L+ DEP S LD
Sbjct: 115 RQRIGIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 47/203 (23%)
Query: 81 PGTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD 137
PG ++G +G+GKSTLL + A + I Y+ Q+
Sbjct: 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI------------KVGYLPQEP 77
Query: 138 NLIGTLTVRETISYSAR--LRLPDK-----MPWSEKRTLVERTIIEMG-LQDCADTVIGN 189
L T TVRE + D+ ++E ++ + E LQ+ D
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAA-DA 136
Query: 190 WHLRG--------------------ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
W L +SGGERRRV++ +L +P +L LDEPT+ LD+ +
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196
Query: 230 AFFVTQTLRCLSRDGRTVIASIH 252
++ Q L+ TV+A H
Sbjct: 197 VAWLEQHLQ---EYPGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 23/181 (12%)
Query: 84 LTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGH--------KTKLSFGTAAYV 133
+TA++GPSG GKST + L+ L + +G IL +L V
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR-TNVGMV 110
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGNWH 191
Q N ++ + ++Y ++ +K+TL E I+E L+ A D + H
Sbjct: 111 FQKPNPFPK-SIYDNVTYGPKIH-----GIKDKKTLDE--IVEKSLRGAAIWDELKDRLH 162
Query: 192 LR--GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
G+SGG+++R+ IA + + P ++ +DEPTS LD + V + ++ L +D +I
Sbjct: 163 DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222
Query: 250 S 250
+
Sbjct: 223 T 223
|
Length = 271 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
K L +T ++ ++ G A++G +GSGKSTL L+ + SG
Sbjct: 12 KTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SG 68
Query: 115 TILLNGHKTKLSFGTAAY-------VTQDDNLIGTLTVRETIS--YSARLRLPDKMPWSE 165
IL+N H L FG ++ + QD N +L R I LRL + +
Sbjct: 69 EILINDHP--LHFGDYSFRSKRIRMIFQDPN--TSLNPRLRIGQILDFPLRLNTDLEPEQ 124
Query: 166 KRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224
+R + T+ +GL D A N++ ++ G+++RV++A +++RP+++ DE +
Sbjct: 125 RRKQIFETLRMVGLLPDHA-----NYYPHMLAPGQKQRVALARALILRPKIIIADEALAS 179
Query: 225 LDSA 228
LD +
Sbjct: 180 LDMS 183
|
Length = 267 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSS--------RLASNA-FLSGTILLNGHKTKLSFGTA 130
+T +GPSG GKST+L +L+ R + FL + G +
Sbjct: 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIG 188
V Q N ++++ + +++ RL K L +R ++ LQ A D V
Sbjct: 92 GMVFQQPNPF-SMSIFDNVAFGLRLN-------RYKGDLGDR--VKHALQGAALWDEVKD 141
Query: 189 NWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ G+S GG+++R+ IA I P +L LDEP S LD A V + + L +D
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD--Y 199
Query: 247 VIASIHQPSSEVFELFDRLYLLS-----GGKTVYFGETSAAFEFF 286
IA + + + D S G +T Y E + F
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244
|
Length = 261 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 33/190 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG------TILLNGHKTKLSFGTAAYV 133
G + L+GP+G GKST L L+ +L N IL ++L Y
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ----NYF 79
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEK---RTLVERTIIEMGLQDCADTVIGNW 190
T+ + + + + D +P + K L+++ E G D ++
Sbjct: 80 TK--------LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKD-ERGKLD---ELVDQL 127
Query: 191 HLRGI--------SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
LR + SGGE +RV+IA + F DEP+S LD + +R L+
Sbjct: 128 ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 243 DGRTVIASIH 252
D V+ H
Sbjct: 188 DDNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTAAYVTQDDNL 139
PG +L+G SGSGKST AL + S G I+ NG + LS G + +D
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRIDTLSPGKLQALRRDIQF 405
Query: 140 I-----GTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNW- 190
I +L R+T+ S LR+ +P V + +GL + A W
Sbjct: 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA------WR 459
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ SGG+R+R+ IA + + P+++ DE S LD + + L L RD
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
I + V + R+ ++ G+ V G A FE
Sbjct: 520 ISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553
|
Length = 623 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTL---LDALSSRLASNAFLSGTIL--LNGHKT 123
VL ++ + G AL+G SG GKSTL L L S N G L LN +
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQD 181
K V QD I + R+T+ R LR + +E+ + + L D
Sbjct: 85 KAFRRDIQMVFQDS--ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD 142
Query: 182 -CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
D +SGG+ +RV +A + + P+LL LDE S LD
Sbjct: 143 SVLDKRPPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 47/224 (20%), Positives = 81/224 (36%), Gaps = 25/224 (11%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKT 123
L+ ++ G ++G +G+GKSTLL +L + + SG + + G
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLL-----KLIAGIYKPTSGKVKVTG--- 88
Query: 124 KLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDC 182
K++ LT RE I + + EK IIE L D
Sbjct: 89 KVAPLIELGA----GFDPELTGRENIYLRGLILGLTRKEIDEK----VDEIIEFAELGDF 140
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D ++ S G R++ ++ + P +L LDE + D+A + L L
Sbjct: 141 IDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
+T++ H + + DR L G+ G +
Sbjct: 196 KNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238
|
Length = 249 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK-TKLSFGT--AAYVT 134
GT+ L+GPSG GK+T+L RL A L G I ++G T S V
Sbjct: 32 GTMVTLLGPSGCGKTTVL-----RLV--AGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
Q L +++ E + Y ++ +P E++ V+ + + L D +
Sbjct: 85 QSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQ----- 136
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
ISGG+++RV++A ++++P++L DEP S LD+
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 30/221 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHK-TKLSFG--TAA--- 131
G + ++G SG+GKSTL+ R + SG +L++G T LS A
Sbjct: 29 PAGEIFGVIGASGAGKSTLI-----RCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83
Query: 132 --YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
+ Q NL+ + TV + ++ L P +E + V + +GL D AD
Sbjct: 84 IGMIFQHFNLLSSRTVFDNVALPLEL---AGTPKAEIKARVTELLELVGLSDKADRYPAQ 140
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+SGG+++RV+IA + P++L DE TS LD A + + L+ ++R+ G T++
Sbjct: 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIV 195
Query: 249 ASIHQPSSEVF-ELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
H+ +V + DR+ ++ G+ V E E F+
Sbjct: 196 LITHE--MDVVKRICDRVAVIDAGRLV---EQGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
++T KDLT T + VLE ++ PG L+G +GSGKSTLL A L +
Sbjct: 2 QMTVKDLTAKYTEGG---NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 57
Query: 111 FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI-SYSARLRLPDKMPWSEKRTL 169
G I ++G +S+ + + + G + + I S + R L WS++
Sbjct: 58 ---GDIQIDG----VSWNSVP-LQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISG------GERRRVSIALEILMRPRLLFLDEPTS 223
+ E+GL+ + G + G G ++ + +A +L + ++L LDEP++
Sbjct: 110 --KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA 167
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
LD + +TL+ + TVI S H+
Sbjct: 168 HLDPITYQVIRKTLK-QAFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 32/209 (15%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YVTQ 135
G + + G G+G++ L+ AL A G + +NG + A V +
Sbjct: 286 GEILGVAGLVGAGRTELVQALFG--AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPE 343
Query: 136 D---DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
D ++ L V + I+ S KM I + I +
Sbjct: 344 DRKRHGIVPILGVGKNITLSVLKSFCFKM-----------RIDAAAELQIIGSAIQRLKV 392
Query: 193 R---------GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ +SGG +++ +A +L PR+L LDEPT G+D A + + + + L+++
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGK 272
G +I + +EV L DR+ ++ GK
Sbjct: 453 GVAIIV-VSSELAEVLGLSDRVLVIGEGK 480
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 251
R +SGGE++RV +A ++ P L DEPT LD A V L + G +++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 252 HQPSSEVFE-LFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
H P EV E L D+ L G+ G F +
Sbjct: 227 HWP--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME 262
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 70/265 (26%), Positives = 104/265 (39%), Gaps = 61/265 (23%)
Query: 61 VTLSN-----GETH---NV-LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASN 109
VTL N G+ ++ L+ G +GPSG GKSTLL ++ + S
Sbjct: 4 VTLRNVTKAYGDVVISKDINLD-----IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58
Query: 110 AFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT 168
G +N + G V Q L L+V E +S+ +L K E
Sbjct: 59 DLFIGEKRMNDVPPAERGVGM---VFQSYALYPHLSVAENMSFGLKLAGAKK---EEINQ 112
Query: 169 LVERT--IIEMGLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLFLDEP 221
V + ++++ HL + +SGG+R+RV+I ++ P + LDEP
Sbjct: 113 RVNQVAEVLQLA------------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
Query: 222 TSGLDSAAAFFV---TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
S LD AA V + R R GRT+I H E L D++ +L G
Sbjct: 161 LSNLD--AALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAG------- 210
Query: 279 TSAAFEFFAQAGFPCPALRNPSDHF 303
AQ G P P++ F
Sbjct: 211 ------RVAQVGKPLELYHYPANRF 229
|
Length = 369 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110
++ + LT T G VL+ L+ E G L+G +GSGKSTLL AL RL S
Sbjct: 1217 QMDVQGLTAKYT-EAGRA--VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-LRLLST- 1271
Query: 111 FLSGTILLNG--------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
G I ++G + +FG V I + T R+ + + D+
Sbjct: 1272 --EGEIQIDGVSWNSVTLQTWRKAFG----VIPQKVFIFSGTFRKNLDPYEQWS--DEEI 1323
Query: 163 WSEKRTLVERTIIEMGLQDCADTVI--GNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220
W + +++IE D D V+ G + L S G ++ + +A IL + ++L LDE
Sbjct: 1324 WKVAEEVGLKSVIEQ-FPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAKILLLDE 1379
Query: 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
P++ LD + +TL+ + TVI S H+
Sbjct: 1380 PSAHLDPVTLQIIRKTLKQSFSNC-TVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
T+TA +GPSG GKST L L+ + ++G I L+G + V +
Sbjct: 45 KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI---YDPRLDVVELRAR 101
Query: 140 IGTL---------TVRETISYSARLR--LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
+G + ++ E ++Y R+ K +E +VE ++ + GL + V
Sbjct: 102 VGMVFQKPNPFPKSIYENVAYGPRIHGLARSK---AELDEIVETSLRKAGLWE---EVKD 155
Query: 189 NWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
H G +SGG+++R+ IA I + P ++ +DEP S LD A V + + L R T
Sbjct: 156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYT 214
Query: 247 VIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ H Q ++ V + R G V G+T F
Sbjct: 215 IVIVTHSMQQAARVSQ---RTAFFHLGNLVEVGDTEKMF 250
|
Length = 267 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 21/158 (13%)
Query: 82 GTLTALMGPSGSGKS-TLLDALSSRLASNAFLSGTILLNG---HKTKLSFGTAAYVTQDD 137
G + AL+G SGSGKS T AL A +G +LL+G L A + Q+
Sbjct: 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88
Query: 138 ----NLIGTLT--VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
N + T+ RET + + + +GL++ A V+ +
Sbjct: 89 RSAFNPLHTMHTHARETCLALGKPADDATLT---------AALEAVGLEN-AARVLKLYP 138
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+SGG +R+ IAL +L + DEPT+ LD A
Sbjct: 139 FE-MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175
|
Length = 254 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 46/207 (22%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG+ L+G +G+GKSTL+ L+ LA +SG I L KL Y Q
Sbjct: 337 PGSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEIGL-AKGIKL-----GYFAQ----- 382
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG------ 194
+ + LR D+ P L + + E L+D +G + +G
Sbjct: 383 ------HQLEF---LR-ADESPLQHLARLAPQEL-EQKLRD----YLGGFGFQGDKVTEE 427
Query: 195 ---ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS- 250
SGGE+ R+ +AL + RP LL LDEPT+ LD +T+ L + +G V+ S
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGALVVVSH 485
Query: 251 -IHQPSSEVFELFDRLYLLSGGKTVYF 276
H S D LYL+ GK F
Sbjct: 486 DRHLLRSTT----DDLYLVHDGKVEPF 508
|
Length = 638 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG +++V I +L +P +L LDEPT G+D A F + Q + L++ + +I
Sbjct: 388 QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447
Query: 251 IHQPSSEVFELF---DRLYLLSGGKTVYFGETS 280
SSE+ EL DR+ ++S G +T
Sbjct: 448 ----SSEMPELLGITDRILVMSNGLVAGIVDTK 476
|
Length = 491 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 15/211 (7%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF---- 127
L+G+ PG L G +G+GKSTL+ LS + G I +G K S
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW-DGEIYWSGSPLKASNIRDT 75
Query: 128 --GTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCAD 184
+ Q+ L+ L+V E I + LP +M ++ + + E+ L
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 185 T-VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
T +G++ GG+++ V IA + + RLL LDEP+S L + +R L
Sbjct: 136 TRPVGDY-----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
G + H+ +EV + D + ++ G+ V
Sbjct: 191 GVACVYISHK-LNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKT------KLSFGTAA 131
+ +L+GP+G+GK+T+ + L+ F GTILL G +++
Sbjct: 30 EQEIVSLIGPNGAGKTTVFNCLT------GFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPD-------KMP---WSEKRTLVERTII---EMG 178
Q L +TV E + + +L K P +E L +R +G
Sbjct: 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL-DRAATWLERVG 142
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L + A+ GN ++ G++RR+ IA ++ +P +L LDEP +GL+ + + +
Sbjct: 143 LLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L + + I V + DR+Y+++ G
Sbjct: 198 ELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
Length = 255 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 7e-07
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----------HK 122
GL+ G L + GP+G+GK++LL L+ LA +G +L G H+
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAG-LARPD--AGEVLWQGEPIRRQRDEYHQ 74
Query: 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE----MG 178
L G + + LT E + + RL + + E +G
Sbjct: 75 DLLYLGHQPGIKTE------LTALENLRFYQRLH----------GPGDDEALWEALAQVG 118
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L D + L S G++RRV++A L R L LDEP + +D + L
Sbjct: 119 LAGFEDVPVR--QL---SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 239 CLSRDGRTVIASIHQP 254
+ G VI + HQ
Sbjct: 174 QHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L D +T++G+ + +SGG+++R+SIA I+ P++L LDE TS LD+ + + V +T+
Sbjct: 565 LPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Query: 239 CLS-RDGRTVIASIHQPSS 256
L + R I H+ S+
Sbjct: 624 NLKGNENRITIIIAHRLST 642
|
Length = 1466 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 33/157 (21%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G+L A++G +G GK++L+ A+ L + ++++ GT AYV Q +
Sbjct: 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRS--DASVVIR--------GTVAYVPQ-VSW 689
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHL 192
I TVR+ I + + P+ +R ER I LQ D T IG
Sbjct: 690 IFNATVRDNILFGS--------PFDPER--YERAIDVTALQHDLDLLPGGDLTEIGE--- 736
Query: 193 RG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
RG ISGG+++RVS+A + + D+P S LD+
Sbjct: 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
|
Length = 1622 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 44/217 (20%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ ++ + G ++G +G+GKSTL+ AL L + G I ++G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDG---------- 69
Query: 131 AYVTQDDNLIGTLTVRETI----------SYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
D + I +R ++ S + R L +S++ + E GL
Sbjct: 70 ----IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLN 125
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+S G+R+ + +A +L RPR+L LDE T+ +D A + +T+R
Sbjct: 126 --------------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ T++ H+ + + +D++ ++ G+ +
Sbjct: 172 FTNS-TILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 29/201 (14%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-------LSFGTAAYVTQD--- 136
LMG +G++ L+ L L SG + L+GH+ L+ G Y+++D
Sbjct: 286 LMG---AGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIV-YISEDRKR 338
Query: 137 DNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192
D L+ ++V+E +S +A ++++ V I ++ + IG
Sbjct: 339 DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL--- 395
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI-ASI 251
+SGG +++V+IA ++ RP++L LDEPT G+D A + Q + +G ++I S
Sbjct: 396 --LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSS 453
Query: 252 HQPSSEVFELFDRLYLLSGGK 272
P EV + DR+ ++ G+
Sbjct: 454 EMP--EVLGMSDRILVMHEGR 472
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YVT 134
PG + AL+G +G+GKST++ L+ +A G+IL G + + ++ +
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKSSQEAGIGIIH 85
Query: 135 QDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q+ NLI LT+ E I ++ W + ++ + + L+ +D ++G
Sbjct: 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE---- 141
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL---DSAAAFFVTQTLRCLSRDGRTVIAS 250
+S GE++ V IA + +++ +DEPT L ++ + F V + L+ R I
Sbjct: 142 -LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG----IVY 196
Query: 251 IHQPSSEVFELFDRLYLLSGGK 272
I E+FE+ D + + G+
Sbjct: 197 ISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-06
Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 80/195 (41%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL------LNGHKTKLSFG-TAAYV 133
PG ++G +G+GKSTLL I+ G + + + G Y+
Sbjct: 32 PGAKIGVLGLNGAGKSTLL---------------RIMAGVDKEFEG-EARPAPGIKVGYL 75
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-----------------TIIE 176
Q+ L TVRE + + +E + ++R E
Sbjct: 76 PQEPQLDPEKTVRENV----------EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAE 125
Query: 177 MG-LQD----------------------C--ADTVIGNWHLRGISGGERRRVSIALEILM 211
G LQ+ C D + +SGGERRRV++ +L
Sbjct: 126 QGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK-----LSGGERRRVALCRLLLE 180
Query: 212 RPRLLFLDEPTSGLD 226
+P +L LDEPT+ LD
Sbjct: 181 KPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 32/250 (12%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL------SSR 105
L ++LT+ S G ++ ++ G + L+G SGSGKS + A+ + R
Sbjct: 4 LDIRNLTIEFKTSQGWV-KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62
Query: 106 LASNAFLSGTI-LLN----------GHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154
+ ++ I LL GH + F +G ++ +++ +
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYK 122
Query: 155 LRLPDKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
R + W ++R L+ R +G++D D I + ++ GE ++V IA+ + +
Sbjct: 123 GRWWQRFGWRKRRAIELLHR----VGIKDHKD--IMRSYPYELTEGECQKVMIAIALANQ 176
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQPSSEVFELFDRLYLLS 269
PRLL DEPT+ ++ Q R LSR + T I I + + D++ +L
Sbjct: 177 PRLLIADEPTNSMEPTTQ---AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233
Query: 270 GGKTVYFGET 279
G+TV +
Sbjct: 234 CGQTVESAPS 243
|
Length = 330 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA- 130
L+ ++ G + +L G +G+GKSTL+ LS + G I+ G +L
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY-EGEIIFEG--EELQASNIR 77
Query: 131 -------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A + Q+ L+ L+V E I + M + ++ + ++ L
Sbjct: 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP 137
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
T +GN + G+++ V IA + + RLL LDEPT+ L + + +R L
Sbjct: 138 ATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
G I H+ +EV + D + ++ G+ +
Sbjct: 193 GIACIYISHK-LNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF------GTAAYVTQ 135
G + G GSG++ L++ L + G I LNG AY+T+
Sbjct: 289 GEILGFAGLVGSGRTELMNCL---FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 136 ---DDNLIGTLTVRETISYSARLRLPD-KMPW-----SEKRTLVERTIIEMGLQDCADTV 186
D+ ++ + ++ S L+ K +++ E + L+ C
Sbjct: 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK-CHSV- 403
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
N ++ +SGG +++V I+ + P ++ DEPT G+D A + + +R L+ DG+
Sbjct: 404 --NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKV 461
Query: 247 VIASIHQPSSEVFELF---DRLYLLSGGK 272
++ SSE+ E+ DR+ + G+
Sbjct: 462 ILMV----SSELPEIITVCDRIAVFCEGR 486
|
Length = 510 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L G+T G L A++G G GKS+LL AL LA + G + + G+ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVHMK--------GSVA 702
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
YV Q I ++RE I + L E L+ +E+ L T IG
Sbjct: 703 YVPQ-QAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD--LEI-LPSGDRTEIGE-- 756
Query: 192 LRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+G+ SGG+++RVS+A + + D+P S +D+
Sbjct: 757 -KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 39/189 (20%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASN---------------AFLSGTILLNGHKTK 124
PG + ++GP+G GKST L L+ L N F GT L N + K
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRF-RGTELQN-YFKK 155
Query: 125 LSFGT--AAYVTQDDNLIGTL---TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
L G A + Q +LI + V E L+ D+ R + + +GL
Sbjct: 156 LYEGELRAVHKPQYVDLIPKVVKGKVGEL------LKKVDE------RGKFDEVVERLGL 203
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
++ D + +SGGE +RV+IA +L + F DEP+S LD + +R
Sbjct: 204 ENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 240 LSRDGRTVI 248
L+ DG+ VI
Sbjct: 259 LAEDGKYVI 267
|
Length = 591 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY------- 132
E G+ AL+G +GSGKSTL+ ++ L + SGTI + G+ G
Sbjct: 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKV 87
Query: 133 --VTQ-DDNLIGTLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCADTVI 187
V Q + + TV + + + P +SE + + + ++GL +
Sbjct: 88 SLVFQFPEAQLFENTVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGL----SEDL 138
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 247
+ +SGG+ RRV+IA + P +L LDEP +GLD + Q + + G TV
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTV 198
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTV 274
I H +V E D + +L GK +
Sbjct: 199 ILVTHN-MDDVAEYADDVLVLEHGKLI 224
|
Length = 287 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 51/233 (21%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----HKTKLSFGTAAYVTQ 135
E G A++G +GSGKSTL+ +++ L +GT+ ++ HKTK Y+
Sbjct: 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK-----DKYIRP 82
Query: 136 DDNLIGTL-----------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
IG + TV I + + KM E + R ++++G
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPK---NFKMNLDEVKNYAHRLLMDLGFS---- 135
Query: 185 TVIGNWHLRGI--------SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
R + SGG+ R+++I + M P ++ LDEPT+GLD + V +
Sbjct: 136 --------RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL 187
Query: 237 LRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
L+ L + +T+I H +EV D + ++ G V ++ E F
Sbjct: 188 LKSLQTDENKTIILVSHD-MNEVARYADEVIVMKEGSIV---SQTSPKELFKD 236
|
Length = 286 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 40/225 (17%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTIL----------LNGHKTKLSFGTAA 131
+ A +GPSG GKSTLL + + L A + G +L +N K + G
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM-- 105
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA--DTVIGN 189
V Q N ++ E I+++ R K L E ++E L+ A + V
Sbjct: 106 -VFQRPNPFPK-SIYENIAFAPRAN-------GYKGNLDE--LVEDSLRRAAIWEEVKDK 154
Query: 190 WHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRT 246
+G +SGG+++R+ IA I M+P +L +DEP S LD + V + CL ++ T
Sbjct: 155 LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL--CLELKEQYT 212
Query: 247 VIASIH--QPSSEVFE---LFDRLYLLSG---GKTVYFGETSAAF 283
+I H Q +S V + F+ G GK V F T F
Sbjct: 213 IIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257
|
Length = 274 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255
SGG+R+RV IA+ + P LL DEPT+ LD + L+ L + I I
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218
Query: 256 SEVFELFDRLYLLSGGKTVYFGETSAAFE 284
V + DR+Y++ G+ V G T F
Sbjct: 219 GIVRKFADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 47/190 (24%)
Query: 63 LSNGETHNVL-EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121
LS G +L + L+ PG + ++GP+G+GKSTL ++ + + SGTI + G
Sbjct: 328 LSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKI-GE 383
Query: 122 KTKLSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
KL AYV Q D L TV E IS II++G +
Sbjct: 384 TVKL-----AYVDQSRDALDPNKTVWEEISGGL-------------------DIIQLGKR 419
Query: 181 DC-ADTVIGNWHLRG---------ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ + +G ++ +G +SGGER RV +A + +L LDEPT+ LD
Sbjct: 420 EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD---- 475
Query: 231 FFVTQTLRCL 240
+TLR L
Sbjct: 476 ---VETLRAL 482
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 3e-06
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 15/223 (6%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHKTKLS 126
N L G++ G +++G +GSGKST L+D L + G +L + L
Sbjct: 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
DN TV + +++ +P E V+ ++ + + D
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDFKTRE 137
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+SGG+++RV++A I +RP ++ LDE TS LD + + + + +
Sbjct: 138 PAR-----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ SI E DR+ ++ G+ + + +A E FA +
Sbjct: 193 TVLSITHDLDEAAS-SDRILVMKAGEII---KEAAPSELFATS 231
|
Length = 277 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILL---NGHKTKLSFGTA------ 130
G A++G SGSGKS AL L A +LL + +LS +A
Sbjct: 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101
Query: 131 -----AYVTQD--DNLIGTLTVRETISYSARLRL---PDKMPWSEKRTLVERTIIEMGLQ 180
A + Q+ +L TV E I+ S RL ++ KR L + I E
Sbjct: 102 RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE---- 157
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
A T++ + + +SGG R+RV IA+ + RP +L DEPT+ LD + Q ++ L
Sbjct: 158 --AQTILSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
++ + I V E+ DR+ ++ G+ V G F
Sbjct: 215 QKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257
|
Length = 623 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 84 LTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
+TA +GPSG GKST+L + + L + G + +G V + IG
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRR---IG 94
Query: 142 TL---------TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192
+ ++ + I+Y AR+ K E LVER++ + L D + L
Sbjct: 95 MVFQKPNPFPKSIYDNIAYGARI-NGYKGDMDE---LVERSLRQAALWDEVKDKLKQSGL 150
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS-- 250
+SGG+++R+ IA I ++P ++ +DEP S LD + + + + L +I +
Sbjct: 151 -SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
Query: 251 IHQPS--SEVFELFDRLYLLSGGKTVYFGE 278
+ Q + S++ F+ GG+ Y E
Sbjct: 210 MQQAARVSDMTAFFNVELTEGGGRYGYLVE 239
|
Length = 264 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-06
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQ 253
+SGG++RRV++A I M L LDEPT GLD F+ R + +I H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287
+V + D + ++ GK + G + FE F+
Sbjct: 211 -MDQVLRIADEVIVMHEGKVISIG---SPFEIFS 240
|
Length = 289 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+SGG+ RRV+IA + M P +L LDEPT+GLD
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHK-TKLSFGTA-----AYV 133
G + L G G+G++ L + L R A G I+LNG + LS Y+
Sbjct: 288 AGEILGLAGVVGAGRTELAETLYGLRPAR----GGRIMLNGKEINALSTAQRLARGLVYL 343
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPW----SEKRTLVERTIIEMGLQDCADTVIGN 189
+D G L + ++++ ++ + + + ++ER + ++
Sbjct: 344 PEDRQSSG-LYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK-FNH---AE 398
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
R +SGG +++V IA + P+LL +DEPT G+D +A + Q +R ++ V+
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 250 SIHQPSSEVFELFDRLYLLSGGK 272
I E+ ++ DR+ ++ G+
Sbjct: 459 -ISSDLEEIEQMADRVLVMHQGE 480
|
Length = 510 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------KTKLSFGTAAYVTQ 135
G T+++G +GSGKST+ + SG I N KL
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQN 91
Query: 136 DDNLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
DN V + Y L + P+ E V + ++ + + AD +
Sbjct: 92 PDNQF----VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----YEPNA 142
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGG+++RV+IA + + P ++ LDE TS LD A + +R + + I SI
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 255 SSEVFELFDRLYLLSGGKTVY 275
SE E D + +++ G TVY
Sbjct: 203 LSEAMEA-DHVIVMNKG-TVY 221
|
Length = 269 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGGE +RV+IA +L DEP++ LD + +R LS +G+ +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP--ALRNPSDHFLRCINSDF 311
+ + L DR+++ G VY G R + FLR F
Sbjct: 132 LAVLDYLSDRIHVFEGEPGVY--------------GIASQPKGTREGINRFLRGYLITF 176
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
SGGE+ R+++A +L P LL LDEPT+ LD
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 39/212 (18%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G LT ++G +GSGKSTLL +L S+ + G + + S AYV Q I
Sbjct: 686 GKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVW-----AERSI---AYVPQQ-AWIM 733
Query: 142 TLTVRETISY-----SARLRLPDKMPWSEKRTLVERTIIEMGLQDCA---DTVIGNWHLR 193
TVR I + +ARL V + +E L +T IG +
Sbjct: 734 NATVRGNILFFDEEDAARLA-----------DAVRVSQLEADLAQLGGGLETEIGE---K 779
Query: 194 GI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
G+ SGG++ RVS+A + + LD+P S LD+ V + + G+T + +
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLAT 839
Query: 252 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
HQ V D + L G+ + G SA F
Sbjct: 840 HQ--VHVVPRADYVVALGDGRVEFSGS-SADF 868
|
Length = 1560 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHK-TKLSFGTAAYVTQD 136
E G A++G SG GKSTL +RL + G + G K + Q
Sbjct: 39 ERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 137 -----DNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIG 188
N G+L R+ + L + + +E+R + ++GL+ + D
Sbjct: 94 IQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP- 152
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
H+ SGG+R+R++IA +++ P ++ DEP S LD
Sbjct: 153 --HM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-R 242
DT +G + + +SGG+++R++IA +L P++L LDE TS LDS + + +T+ + +
Sbjct: 1349 DTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407
Query: 243 DGRTVIASIHQPSS 256
+T+I H+ +S
Sbjct: 1408 ADKTIITIAHRIAS 1421
|
Length = 1466 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 40/174 (22%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK-T 123
V++G+ G L+GPSG GKSTLL R+ A L SG I + G
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLL-----RMV--AGLERITSGEIWIGGRVVN 69
Query: 124 KLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT--IIEM 177
+L A A V Q+ L ++VRE ++Y ++R MP +E V I+E+
Sbjct: 70 ELE--PADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILEL 124
Query: 178 GLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L R +SGG+R+RV++ I+ P + DEP S LD
Sbjct: 125 E------------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
LE G G + ++GP+G GK+T + L+ + + G+ K+S+
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGSEE----DLKVSY-KPQ 408
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Y++ D + TV + + + R +E +V+ + L+D +
Sbjct: 409 YISPDYD----GTVEDLLRSAIRSAFGSSYFKTE---IVKP----LNLEDLLER-----P 452
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
+ +SGGE +RV+IA + L LDEP++ LD V + +R
Sbjct: 453 VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G+L A++G +G GK++L+ A+ L+ S I G+ AYV Q + I
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR----------GSVAYVPQV-SWIF 691
Query: 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRG 194
TVRE I + + ++ W R I LQ D T IG RG
Sbjct: 692 NATVRENILFGSDFE-SERY-W--------RAIDVTALQHDLDLLPGRDLTEIGE---RG 738
Query: 195 --ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
ISGG+++RVS+A + + D+P S LD+ A V + G+T + +
Sbjct: 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
Query: 253 QPSSEVFELFDRLYLLSGG 271
Q L DR+ L+S G
Sbjct: 799 Q--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105
L+ KDL V V E +L GL PG + A+MGP+GSGKSTL L+ R
Sbjct: 2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 57/161 (35%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KTKLSFGTAAYVTQ--------- 135
AL+GP+G GK+TLL + +L ++ SG I H TKL AY Q
Sbjct: 349 ALIGPNGCGKTTLLKLMLGQLQAD---SGRI----HCGTKLE---VAYFDQHRAELDPEK 398
Query: 136 --DDNLI-GTLTV------RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
DNL G V R + Y L D + + KR T +
Sbjct: 399 TVMDNLAEGKQEVMVNGRPRHVLGY-----LQDFL-FHPKRA---MTPV----------- 438
Query: 187 IGNWHLRGISGGERRRVSIALEILMRP-RLLFLDEPTSGLD 226
+ +SGGER R+ +A + ++P LL LDEPT+ LD
Sbjct: 439 ------KALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQ 253
+S GER RV++A ++ PR++ LDEPT +D VT + L+ +T I H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGET 279
V ++ DR L+ GK V G+
Sbjct: 488 -MDFVLDVCDRAALMRDGKIVKIGDP 512
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASN 109
G L A++GPSG+GK TLLDA +RLA
Sbjct: 4 MGRLIAVVGPSGAGKDTLLDAARARLAGR 32
|
Length = 192 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
+SGG +RV IA+ I RP+LL DEPT+ LD + + L L + + I
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286
+ V E ++ ++ G+ V ET A + F
Sbjct: 214 LALVAEAAHKIIVMYAGQVV---ETGKAHDIF 242
|
Length = 326 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSS------RLASNAFLSGTI-LLN----------GHKTK 124
G + L+G SGSGKS + A+ R+ ++ I LL GH
Sbjct: 33 GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVS 92
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT--LVERTIIEMGLQDC 182
+ F +G ++ ++ + R + W ++R L+ R +G++D
Sbjct: 93 MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHR----VGIKDH 148
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
D + ++ ++ GE ++V IA+ + +PRLL DEPT+ ++ Q R L+R
Sbjct: 149 KD-AMRSFPYE-LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ---AQIFRLLTR 203
Query: 243 ---DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ T I I + + D++ +L G+TV
Sbjct: 204 LNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
|
Length = 330 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 59 VMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL 102
V V + L+ L + G AL+G SG GKSTL++AL
Sbjct: 172 VPVLAVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNAL 215
|
Length = 356 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 194 GISGGERRRVSIAL-----EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+SGGE+ ++AL + RP L LDE GLD + + + G VI
Sbjct: 77 QLSGGEKELSALALILALASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 249 ASIHQPSSEVFELFDRLY 266
H P E+ EL D+L
Sbjct: 136 VITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 384 MQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFV 442
Q L KR F+ RD RL+ +++ + GT++ N+ T + G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPG----LL 56
Query: 443 FGFVTFMSIGGF----PSFVEDMKVSLLIFYPTAVAKFIKRGVINISSVIFF 490
F + F + P F+ + V + ++ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGV----LERELASPLYSPSAYVLAKILVE 104
|
Length = 210 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 191 HLRGISGGERRRVSIAL-----EILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
++ +SGGER S+AL ++L R LLFLDEP LD + + L L
Sbjct: 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS 871
Query: 243 DGRTVI 248
DGR +I
Sbjct: 872 DGRQII 877
|
Length = 908 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 85 TALMGPSGSGKSTLLDALS 103
T L GPSGSGKSTL+DA+
Sbjct: 24 TLLTGPSGSGKSTLIDAIQ 42
|
Length = 60 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 28/225 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V+ + + + VL+ + AL+G +GSGKSTL L + G I L+G
Sbjct: 346 VSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLL---MGYYPLTEGEIRLDG 402
Query: 121 HK-TKLSFGT----AAYVTQD-----DNLIGTLTVRETISYSARLRLPDKMPWSE-KRTL 169
+ LS A V QD D + +T+ IS + + + +E R+L
Sbjct: 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSL 462
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+ +G Q GN +S G+++ +++A ++ P++L LDE T+ +DS
Sbjct: 463 PDGLYTPLGEQ-------GN----NLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
+ Q L R+ T++ H+ S+ V D + +L G+ V
Sbjct: 512 EQAIQQALA-AVREHTTLVVIAHRLSTIVEA--DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 3e-04
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 46/171 (26%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD-DNL 139
PG + ++GP+G+GKSTL ++ + + SGTI + G KL AYV Q D L
Sbjct: 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKI-GETVKL-----AYVDQSRDAL 399
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRG---- 194
TV E IS II++G ++ + +G ++ +G
Sbjct: 400 DPNKTVWEEISGGL-------------------DIIKVGNREIPSRAYVGRFNFKGGDQQ 440
Query: 195 -----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+SGGER R+ +A + +L LDEPT+ LD +TLR L
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD-------VETLRAL 484
|
Length = 556 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 43/209 (20%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG----------HKTKLSFGTAA 131
G + ++G +G GKSTL G ILL+G ++ S A
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFAD 424
Query: 132 YVTQDDNLIGTL-----TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+ DD LIG ++ Y RL + DK+ I + G
Sbjct: 425 FHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKV-----------KIEDGGFSTTTA-- 470
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGR 245
+S G+++R+++ L +L DE + D A FF + L L R G+
Sbjct: 471 --------LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTV 274
T+I H + FEL D++ L+ G V
Sbjct: 523 TIIIISH--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 192 LRGISGGERRRVSIA---LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
++GIS G +R +++ L L + LL +DEP +GL + + L+ LS G +I
Sbjct: 187 IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLI 246
Query: 249 ASIHQPS 255
+ H P
Sbjct: 247 FTTHSPL 253
|
Length = 256 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 20/207 (9%)
Query: 89 GPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAAYVTQDDNLI------- 140
G SG GKST A+ + + G + G + V D +I
Sbjct: 54 GESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110
Query: 141 --GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198
+T+ E I+ R P K+ E + V+ ++++GL +I N + SGG
Sbjct: 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGL---LPNLI-NRYPHEFSGG 165
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSE 257
+ +R+ IA +++ P+L+ DEP S LD + V L+ L R+ G ++I H +
Sbjct: 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV- 224
Query: 258 VFELFDRLYLLSGGKTVYFGETSAAFE 284
V + DR+ ++ G V G +
Sbjct: 225 VKHISDRVLVMYLGHAVELGTYDEVYH 251
|
Length = 331 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA------YVT 134
P ++ ALMG +G+GKSTLL L + SG+IL G + A V
Sbjct: 23 PHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVH 79
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII---EMGLQ-DCADTVIGNW 190
Q+ NL+ +V + + R P K + ++ + T E+ + D V
Sbjct: 80 QELNLVLQRSVMDNMWLG---RYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA--- 133
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+S + + + IA +++ +DEPTS L + +R L G ++
Sbjct: 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190
Query: 251 IHQPSSEVFELFDRLYLLSGGKTV 274
H+ E+F+L D + +L G+ +
Sbjct: 191 SHK-MEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 44/182 (24%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-------HKTKLSFGTAAYVT---- 134
A +G +GSGKS L AL+ L LL+G H T+LSF +
Sbjct: 33 AFVGANGSGKSALARALAGEL---------PLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 135 QDDN--LIGT------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
Q +N ++ T E I + E+ + G+ D
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDR- 131
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
+ +S GE R+ + ++ P LL LDEP GLD A+ + + L L + G T
Sbjct: 132 ----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187
Query: 247 VI 248
++
Sbjct: 188 LV 189
|
Length = 490 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 79 AEPGTLT-----ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133
E G+++ ++GP+G GK+T + ++ L+G + + ++ T +Y
Sbjct: 17 VEGGSISESEVIGILGPNGIGKTTFI-----KM-----LAGVLKPDEGDIEIELDTVSYK 66
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
Q TVR+ +S D +T + + ++ D +
Sbjct: 67 PQYIKADYEGTVRDLLSS----ITKDFYTHPYFKTEI---AKPLQIEQILDR-----EVP 114
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
+SGGE +RV+IA + + LDEP++ LD ++ +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 55/206 (26%)
Query: 71 VLEGLTGYAEPGT----------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
L+ + E L + GP+G+GKST+LDA++ L
Sbjct: 7 ELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL-------------- 52
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
+G + +V +A + ++ K+ VER+ +
Sbjct: 53 ------YGK---TPRYGRQENLRSVFAPGEDTAEVSFTFQL--GGKKYRVERS-RGLDYD 100
Query: 181 DCADTVI---GNW------HLRGISGGERRRVSIALEILM----------RPRLLFLDEP 221
V+ G + + +SGGE S++L + + R LF+DE
Sbjct: 101 QFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEG 160
Query: 222 TSGLDSAAAFFVTQTLRCLSRDGRTV 247
LD A V L + + R V
Sbjct: 161 FGTLDPEALEAVATALELIRTENRMV 186
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 34/180 (18%)
Query: 113 SGTILLNGHKTKLS-------FGTAAYVTQD---DNLIGTLTVRETISYSARLRLPDKMP 162
G I ++G K+ G A V +D D ++ + V + I+ +A
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIA-MVPEDRKRDGIVPVMGVGKNITLAAL-------- 367
Query: 163 WSEKRTLVERTIIEMGL-QDCADTVIGNWHLR---------GISGGERRRVSIALEILMR 212
+ I+ I ++ +SGG +++ +A +L+
Sbjct: 368 ----DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
P++L LDEPT G+D A + + + + L + G +I I EV L DR+ ++ GK
Sbjct: 424 PKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV-ISSELPEVLGLSDRVLVMHEGK 482
|
Length = 506 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-------AYVT 134
G L L+G +GSGKSTL L+ SG ILL+G +S + V
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDG--KPVSAEQLEDYRKLFSAVF 403
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
D +L L E A +L +K W ++ L +T L D G +
Sbjct: 404 SDYHLFDQLLGPEG---KASPQLIEK--WLQRLELAHKT----SLND------GRFSNLK 448
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGRTVIASIHQ 253
+S G+++R+++ L +L +L LDE + D A F L L G+T+ A H
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH- 507
Query: 254 PSSEVFELFDRLYLLSGGKTV 274
F DRL + G+
Sbjct: 508 -DDHYFIHADRLLEMRNGQLS 527
|
Length = 546 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106
+D+ V + + + LE L T L+G SG GKSTL++AL L
Sbjct: 138 EDIGYPVLFVSAKNGDGLEELAELLAGKI-TVLLGQSGVGKSTLINALLPEL 188
|
Length = 301 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
+ + DLT L + LE G G + ++GP+G GK+T L+ L +
Sbjct: 341 VEYPDLTK--KLGDFS----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-- 392
Query: 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G + + K+S+ Y+ D + TV + + S L SE +++
Sbjct: 393 -EGEVDP---ELKISY-KPQYIKPDYDG----TVEDLLR-SITDDLGSSYYKSE---IIK 439
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ L+ D +++ +SGGE +RV+IA + L LDEP++ LD
Sbjct: 440 P----LQLERLLDK-----NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490
Query: 232 FVTQTLR 238
V + +R
Sbjct: 491 AVAKAIR 497
|
Length = 590 |
| >gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLA 107
G L ++GPSG+GK TLLD +RLA
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLA 26
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASN---------------AFLSGTILLNGHKTK 124
+ G +T ++GP+G GK+T + LS L N F GT L N + K
Sbjct: 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF-RGTELQN-YFKK 154
Query: 125 LSFG--TAAYVTQDDNLI-----GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
L G + Q +LI G VRE L+ D+ R ++ + +
Sbjct: 155 LYNGEIKVVHKPQYVDLIPKVFKGK--VREL------LKKVDE------RGKLDEVVERL 200
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
GL++ D I +SGGE +RV+IA +L F DEPTS LD V + +
Sbjct: 201 GLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 238 RCLSRDGRTVI 248
R L+ G+ V+
Sbjct: 256 RELAE-GKYVL 265
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.001
Identities = 38/181 (20%), Positives = 57/181 (31%), Gaps = 60/181 (33%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI 140
PG + ++GP GSGK+TL AL+ L G I ++G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDG-------------------- 38
Query: 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200
I + D +I SG R
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGGKKASGSGELR 66
Query: 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC------LSRDGRTVIASIHQP 254
R+++AL ++P +L LDE TS LD+ + S TVI + +
Sbjct: 67 LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 255 S 255
Sbjct: 127 K 127
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT- 129
VL+ ++ E G L A+ G +GSGKS+LL + L + G I H ++SF
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKI---KHSGRISFSPQ 494
Query: 130 AAYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+++ T DN+I L+ E Y++ + K +E I +D TV
Sbjct: 495 TSWIMPGTIKDNIIFGLSYDE-YRYTSVI----------KACQLEEDIALFPEKD--KTV 541
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDG 244
+G + +SGG+R R+S+A + L LD P + LD + F + + +S
Sbjct: 542 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
R ++ S E + D++ LL G ++G S
Sbjct: 601 RILVTS----KLEHLKKADKILLLHEGVCYFYGTFS 632
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 192 LRGISGGERRRVSIALEILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
L +SGGE +R+ +A E+L +P L LDEPT+GL + + L+ L+ G TV+
Sbjct: 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866
Query: 249 ASIH 252
H
Sbjct: 867 IIEH 870
|
Length = 1809 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
G G LT L G G+GKSTL L++ +A+
Sbjct: 28 GLLPRGGLTLLAGAPGTGKSTLALDLAAAVAT 59
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.003
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
++ + G +L+ ++ PG L+G +G+GKSTLL ++ L + G + G
Sbjct: 6 LSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTW-G 60
Query: 121 HKTKLSFGTAAYVTQ 135
K+ Y Q
Sbjct: 61 STVKI-----GYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL GL+ + P ++G +G+GKS++L+AL R+ G I+++ A
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE--LEKGRIMIDD------CDVA 1301
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIE-------MG 178
+ D + ++ + + +S +R + P+SE +ER I+ G
Sbjct: 1302 KFGLTDLRRVLSIIPQSPVLFSGTVRF-NIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L A+ G S G+R+ +S+A +L R ++L LDE T+ +D + +T+R
Sbjct: 1361 LD--AEVSEGG---ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.003
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107
++ L V + +T L+ L + T + L+G SG GKSTLL+AL L
Sbjct: 58 YEKLGYPVLAVSAKTGEGLDELRELLKGKT-SVLVGQSGVGKSTLLNALLPELV 110
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 56/197 (28%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
+G + L+ L L + G SGSGKSTL
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTL-------------------------- 37
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE----RTIIEMGLQ 180
V E + S + RL +P + L+ + +I++GL
Sbjct: 38 --------------------VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGL- 76
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLR 238
+ L +SGGE +RV +A E+ P L LDEP++GL + + ++
Sbjct: 77 ---GYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK 133
Query: 239 CLSRDGRTVIASIHQPS 255
L G TVI H
Sbjct: 134 GLIDLGNTVILIEHNLD 150
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV-TQDDN 138
+PG + A++G SG+GK+TLL + +G +A + + +
Sbjct: 407 KPGDVVAVVGQSGAGKTTLL-RMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEP 465
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGIS 196
G +T+ E + S+ + GL +D V+ +S
Sbjct: 466 EFGEVTILEHL-------------RSKTGDLNAAVEILNRAGL---SDAVLYRRKFSELS 509
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
G++ R +A + RP +L +DE + LD A V + + L+R+ G T+I H+P
Sbjct: 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568
|
Length = 593 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
G SGGE++R I ++ P L LDE SGLD A V + L R+ I H
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAA 282
+ D +++L G+ V G+ +
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVKSGDFTLV 233
|
Length = 248 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 84 LTALMGPSGSGKSTLLDALSSRL 106
+ L G SG GKSTLL+AL L
Sbjct: 37 TSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.94 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.93 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.91 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.9 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.9 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.89 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.88 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.87 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.84 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.81 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.81 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.81 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.8 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.8 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.79 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.77 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.76 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.76 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.76 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.74 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.7 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.69 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.61 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.59 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.57 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.53 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.51 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.48 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.47 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.42 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.39 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.39 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.37 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.37 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.35 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.35 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.34 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.33 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.33 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.31 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.31 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.28 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.27 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.26 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.26 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.21 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.18 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.15 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.14 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.12 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.12 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.1 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.08 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.08 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.05 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.99 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.99 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.91 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.9 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.89 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.89 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.89 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.85 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.74 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.66 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.65 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.64 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.63 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.61 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.58 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.58 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.58 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.56 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.55 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.51 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.5 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.48 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.43 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.4 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.39 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.32 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.25 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.24 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.2 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.2 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.15 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.14 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.12 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.12 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.12 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.11 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.11 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.1 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.08 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.06 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.05 | |
| PRK13764 | 602 | ATPase; Provisional | 98.03 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.03 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.02 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.01 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.98 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 97.97 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.96 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.96 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.95 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.93 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.93 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=624.25 Aligned_cols=414 Identities=43% Similarity=0.665 Sum_probs=346.1
Q ss_pred CCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-
Q 010936 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK- 124 (497)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~- 124 (497)
...++.++|+|+++..+.+....+++|+|||++++|||++||+|||||||||||++|+|+...+...+|+|++||++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 3456789999999998754334588999999999999999999999999999999999999875568999999996543
Q ss_pred -CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 125 -~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..++.+|||.|+|.++|++||+|++.|++.+++|...+..+++++++++++++||.+|+|+.+|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 3356789999999999999999999999999999888899999999999999999999999999988899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+||.+|++||+||||||||||||+.++.++++.|++++++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHhhcc--hhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHH-
Q 010936 284 EFFAQAGFPCPALRNPSDHFLRCINSD--FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE- 360 (497)
Q Consensus 284 ~~f~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~- 360 (497)
+||+..|++||.+.||+||++++++.+ ..... ...........++..+...+...
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 317 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVDSGTRELE----------------------EAVRIAKLINKFSQTDNLKKTLEA 317 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH----------------------hHHHHHHHhhhccccchhhhhHHH
Confidence 999999999999999999999988753 11110 00111111222221000000000
Q ss_pred HHhhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010936 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCAS 440 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lf 440 (497)
....... .... .....++||.|+++|++|.+++.+|||.++..|+++++++|+++|++||+++++..+++++.|++|
T Consensus 318 ~~~~~~~--~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~ 394 (613)
T KOG0061|consen 318 LEKSLST--SKKV-EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFF 394 (613)
T ss_pred Hhhhccc--cccc-ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Confidence 0000100 0000 111278999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhHHHHhHhhh-------cceeechhHHHHHhHhcccch
Q 010936 441 FVFGFVTFMSIG-GFPSFVEDMKV-------SLLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 441 f~~~~~~f~~~~-~~~~~~~~r~~-------~~~~~~p~~~~~~~~~~~~~~ 484 (497)
|++.++.|.++. +++.|..||++ ..|....++.|+.+-+.|+.+
T Consensus 395 ~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~ 446 (613)
T KOG0061|consen 395 FILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLL 446 (613)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHH
Confidence 999999887765 46766666666 555566677788887888777
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=598.64 Aligned_cols=417 Identities=33% Similarity=0.532 Sum_probs=334.3
Q ss_pred CCceeEEEEEeEEEEEEccC------------------------CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHH
Q 010936 46 GDVSARLTWKDLTVMVTLSN------------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101 (497)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~ 101 (497)
+..++.++|.|++|+.+..+ -+++.+|+|||+++++||++||+|||||||||||++
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34578899999999986431 024679999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeEEEECCEecCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 010936 102 LSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (497)
Q Consensus 102 L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (497)
|+|+.+|+ ..+|+|.+||++... ..+.++||+|++.+++.+||+||+.|++.++.+...+.++++++++++++.+||.
T Consensus 114 LaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998773 248999999997532 2356999999999999999999999988766554445566677899999999999
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh
Q 010936 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (497)
Q Consensus 181 ~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~ 260 (497)
++.|+.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++.+
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999988899999999998767899
Q ss_pred cCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHH
Q 010936 261 LFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 340 (497)
Q Consensus 261 ~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (497)
+||++++|++|++++.|+++++.+||+++|++||.+.||+||++++++.+... .+. ...+. ..
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~-----~~~~~-------~~ 335 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGV-----SEREK-------PN 335 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCc-----ccccc-------ch
Confidence 99999999999999999999999999999999999999999999987653210 000 00000 00
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhh--hhc-c-------cCccc--cCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 010936 341 AIKNLIDFYQTSQHSYAAKEKVEG--ISK-V-------KGTVL--DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 408 (497)
Q Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~~--~~~-~-------~~~~~--~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~ 408 (497)
..+.+.+.|+.... ....+.... ... . ..... ....+.++|++|+.+|++|++++ +||+.+..+|+
T Consensus 336 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~ 413 (659)
T PLN03211 336 VKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRV 413 (659)
T ss_pred HHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHH
Confidence 11223334432110 000000000 000 0 00000 11235578999999999999988 89999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHhHhhh-------cceeechhHHHHHhHhc
Q 010936 409 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPSFVEDMKV-------SLLIFYPTAVAKFIKRG 480 (497)
Q Consensus 409 ~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lff~~~~~~f~~-~~~~~~~~~~r~~-------~~~~~~p~~~~~~~~~~ 480 (497)
++++++|+++|++||+++ ..++++|.|++||+++++.+.+ ++.++.|..||++ +.|...++.+|+.+-|.
T Consensus 414 ~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~el 491 (659)
T PLN03211 414 FQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDL 491 (659)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999985 6789999999999988877654 4556666666655 78888999999999999
Q ss_pred ccch
Q 010936 481 VINI 484 (497)
Q Consensus 481 ~~~~ 484 (497)
|+.+
T Consensus 492 P~~~ 495 (659)
T PLN03211 492 PMEL 495 (659)
T ss_pred HHHH
Confidence 9988
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=589.51 Aligned_cols=396 Identities=36% Similarity=0.567 Sum_probs=333.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV 145 (497)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 5789999999999999999999999999999999999987754458999999997532 24578999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsg 224 (497)
+|||.|++.++.+...+.++++++++++++.+||.+++|+.+|+. ..++|||||||||+||++|+.+|+++||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 999999998877666667777888999999999999999999974 3678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHH
Q 010936 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~ 304 (497)
||+.++..+++.|++++++|+|||+++|||+.++.++||++++|++|+++++|+++++.+||+++|++||...||+||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999998889999999999987899999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhcccC----c--cccCCCC
Q 010936 305 RCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG----T--VLDAGGS 378 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~--~~~~~~~ 378 (497)
+++..+.... . ...+..+.+.+.|+.+....+..+.+.......+ . ......+
T Consensus 277 ~~~~~~~~~~---------------~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (617)
T TIGR00955 277 QVLAVIPGSE---------------N------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGY 335 (617)
T ss_pred HHhhcCcccc---------------c------chHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccccc
Confidence 8875431100 0 0112234455666665544443333221111000 0 0112456
Q ss_pred CCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 010936 379 QASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSF 457 (497)
Q Consensus 379 ~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lff~~~~~~f~~~-~~~~~~ 457 (497)
..+|+.|+++|++|++++.+|||.++.+|+++++++|+++|++||++++++.++++|.|++||+++++.|.++ ..++.|
T Consensus 336 ~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f 415 (617)
T TIGR00955 336 NASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVF 415 (617)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998888864 445555
Q ss_pred HhHhhh-------cceeechhHHHHHhHhcccch
Q 010936 458 VEDMKV-------SLLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 458 ~~~r~~-------~~~~~~p~~~~~~~~~~~~~~ 484 (497)
..||++ ..|...++.+++++-+.|+.+
T Consensus 416 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~ 449 (617)
T TIGR00955 416 TAELPVFLRETRSGLYRVSAYFLAKTIAELPLFI 449 (617)
T ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH
Confidence 555555 666777889999999988877
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-70 Score=609.20 Aligned_cols=411 Identities=32% Similarity=0.494 Sum_probs=359.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-C-CcC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-SFG 128 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~-~~~ 128 (497)
...|+|+.+..+.. ++++++|+|||+.++||.++||||+||||||||||+|+|+...+ .++|+|++||.+.. . ..|
T Consensus 787 V~~w~dl~~~~~~q-G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQ-GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred eEEEEeCCcccccc-ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhcc
Confidence 35677777776543 36788999999999999999999999999999999999997654 58999999999864 2 357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||.|+|.|.+.+||+|.|.|++.+|++..++.+++.+.++++++.++|++++|..||... .|||.+||||++||.+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999866 9999999999999999
Q ss_pred HHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee-CCeEEEEeCchh----H
Q 010936 209 ILMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----A 282 (497)
Q Consensus 209 L~~~p-~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~ 282 (497)
|+.+| .||||||||||||+.++..|++.++++++.|+||+|++|||+.++++.||++++|+ +|++||.|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999997 789999998654 6
Q ss_pred HHHHHhcC-CCCCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHH
Q 010936 283 FEFFAQAG-FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (497)
Q Consensus 283 ~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (497)
++||++.| .+||...|||||+++++...... +...++.+.|+.|..+++..+.
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------------------~~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------------------SLSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc--------------------------ccCccHHHHHhccHHHHHHHHH
Confidence 67999976 89999999999999987643110 0112578899999999998888
Q ss_pred HhhhhcccCc----cccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010936 362 VEGISKVKGT----VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGS 437 (497)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g 437 (497)
++++...... ....++|.+|++.|++.+++|+++.+||+|.|+++|++..++.||++|+.||++|++..++||..|
T Consensus 1078 v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~ 1157 (1391)
T KOG0065|consen 1078 VKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMG 1157 (1391)
T ss_pred HHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHH
Confidence 8876543222 122567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhH--------HHHhHhhhcceeechhHHHHHhHhcccch-hhhhhh
Q 010936 438 CASFVFGFVTFMSIGGFP--------SFVEDMKVSLLIFYPTAVAKFIKRGVINI-SSVIFF 490 (497)
Q Consensus 438 ~lff~~~~~~f~~~~~~~--------~~~~~r~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~ 490 (497)
+.|+.+++..-.-.+..| .+.+||+.++|.+-|..+|+++-|.||++ ++++||
T Consensus 1158 a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~ 1219 (1391)
T KOG0065|consen 1158 AAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFF 1219 (1391)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998877665543332232 36677777999999999999999999999 777665
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=621.43 Aligned_cols=414 Identities=28% Similarity=0.431 Sum_probs=343.8
Q ss_pred eeEEEEEeEEEEEEccCC--------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010936 49 SARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
++.+.|+||+|.++.+.. +.+.+|+|||+++++|++++|+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 457999999999864321 2457999999999999999999999999999999999997643 3589999999
Q ss_pred EecCC--CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 121 HKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 121 ~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.+... .++.+|||+|++.+++.+||+|||.|++.++.+...+.+++.++++++++.+||.+++|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 2356899999999999999999999998776655555666677899999999999999999997667899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (497)
|||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++++|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999988999999999997678999999999996 8999999
Q ss_pred Cc----hhHHHHHHhc-CCC-CCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhh
Q 010936 278 ET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQT 351 (497)
Q Consensus 278 ~~----~~~~~~f~~~-g~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (497)
++ +++.+||+++ |.+ ||+..||+||+++++..+... ....++.+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------------~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------------KLGIDFAEHYKS 1157 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------------cccchHHHHHhc
Confidence 96 5789999997 664 999999999999876532100 001146677887
Q ss_pred chhhHHHHHHHhhhhcccCcc---ccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010936 352 SQHSYAAKEKVEGISKVKGTV---LDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 428 (497)
Q Consensus 352 s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~ 428 (497)
|+.+++..+.+.......... ...+.+..||++|+++|++|+++++||||.++.+|+++++++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 777666555444332211111 11356889999999999999999999999999999999999999999999999987
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHhhh-hHHHH-------hHhhhcceeechhHHHHHhHhcccch-hhhhh
Q 010936 429 Y---NSILARGSCASFVFGFVTFMSIGG-FPSFV-------EDMKVSLLIFYPTAVAKFIKRGVINI-SSVIF 489 (497)
Q Consensus 429 ~---~~~~~~~g~lff~~~~~~f~~~~~-~~~~~-------~~r~~~~~~~~p~~~~~~~~~~~~~~-~~~~~ 489 (497)
. .+++++.|++|++++++++..+.+ +|.|. +||..+.|...|+.+|+++-|.||.+ ++++|
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if 1310 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYY 1310 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 467788999999999888865533 35544 55555899999999999999999988 44443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=622.63 Aligned_cols=421 Identities=25% Similarity=0.401 Sum_probs=343.8
Q ss_pred ceeEEEEEeEEEEEEcc---------------------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHH
Q 010936 48 VSARLTWKDLTVMVTLS---------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~---------------------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~ 100 (497)
+.+.+.|+||++..... +...+++|+|||+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 36779999998876221 112356999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEecCC----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHH-H
Q 010936 101 ALSSRLASN-AFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD----KMPWSEKRTL-V 170 (497)
Q Consensus 101 ~L~G~~~~~-~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v 170 (497)
+|+|+..+. ...+|+|.+||++... .++.++||+|++.+++.+||+||+.|++.++.+. ..+.++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999997421 1259999999987531 2346999999999999999999999998776442 2334443333 5
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 010936 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 249 (497)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~ 249 (497)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+||||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999874 999999
Q ss_pred EeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHHHHhhcchhhHHHhhccccccccccC
Q 010936 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETS 329 (497)
Q Consensus 250 ~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (497)
++|||+++++++||+|++|++|+++++|+++++.+||+++|++||++.||+||++++++.+..... .+ .+ .
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~---~~-----~e-~ 336 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIK---PG-----YE-K 336 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcc---cc-----cc-c
Confidence 999988899999999999999999999999999999999999999999999999988765321110 00 00 0
Q ss_pred CCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhcc------------------cCccccCCCCCCcHHHHHHHHHH
Q 010936 330 DDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV------------------KGTVLDAGGSQASFLMQAFTLTK 391 (497)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~s~~~Q~~~l~~ 391 (497)
..+ ...+++.+.|+.|..+++..+.++..... .......+.+..|+++|+++|++
T Consensus 337 ~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 337 KVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred cCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 001 11235667777776655444333321100 00011134578899999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhHhhh-------c
Q 010936 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV-------S 464 (497)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lff~~~~~~f~~~~~~~~~~~~r~~-------~ 464 (497)
|+++++||||.++++|+++++++|+++|++||+++++++++++|.|++||++++++|+++.+++.++.||++ +
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888888888 3
Q ss_pred ceeechhHHHHHhHhcccch
Q 010936 465 LLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 465 ~~~~~p~~~~~~~~~~~~~~ 484 (497)
.|...++.+|+.+.+.|+.+
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~ 509 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKI 509 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 44555667888888888876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=618.72 Aligned_cols=412 Identities=31% Similarity=0.505 Sum_probs=342.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcC
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFG 128 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~ 128 (497)
..++|+||++.++.+. +.+.+|+|||+++++||++||+|||||||||||++|+|+.+++...+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCC-CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 4589999999985322 34689999999999999999999999999999999999987433358999999998632 346
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++||+|++.+++.+||+||+.|++.++.+...+.+++.++++++++.+||.+++|+.+|+ ...+|||||||||+||++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~-~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV-PGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC-CCCCCCHHHhhHHHHHHH
Confidence 7999999999999999999999998877655556667778899999999999999999985 334899999999999999
Q ss_pred HHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC-eEEEEeCc----hhH
Q 010936 209 ILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAA 282 (497)
Q Consensus 209 L~~~p~-lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~ 282 (497)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999998889999999999976678899999999987 99999997 568
Q ss_pred HHHHHhcCC-CCCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHH
Q 010936 283 FEFFAQAGF-PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (497)
Q Consensus 283 ~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (497)
.+||+..|+ +||+..||+||++++++.+... +....+.+.|+.|.......+.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------------chhccHHHHHhcCHHHHHHHHH
Confidence 899999996 9999999999999987542110 0011355667666555444433
Q ss_pred Hhhhhcc-c-C-c---cccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 010936 362 VEGISKV-K-G-T---VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILAR 435 (497)
Q Consensus 362 ~~~~~~~-~-~-~---~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~ 435 (497)
+...... . . . ......+.+||++|+++|++|+++++||||.++++|+++++++|+++|++||+++++..++++|
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3322111 0 0 0 0112467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH--------HhHhhhcceeechhHHHHHhHhcccch-hhhhh
Q 010936 436 GSCASFVFGFVTFMSIGGFPSF--------VEDMKVSLLIFYPTAVAKFIKRGVINI-SSVIF 489 (497)
Q Consensus 436 ~g~lff~~~~~~f~~~~~~~~~--------~~~r~~~~~~~~p~~~~~~~~~~~~~~-~~~~~ 489 (497)
.|++|+++++..++..+.+|.| .+||..+.|.+.|+..++++-|.||.+ ++++|
T Consensus 1130 ~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if 1192 (1394)
T TIGR00956 1130 MFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIF 1192 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777655555543 456666889999999999999999998 55444
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=604.73 Aligned_cols=423 Identities=25% Similarity=0.404 Sum_probs=340.3
Q ss_pred ceeEEEEEeEEEEEEcc-----------------------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHH
Q 010936 48 VSARLTWKDLTVMVTLS-----------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL 98 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~-----------------------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTL 98 (497)
+.+.++|+||++..... +...++||+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 56789999999976510 1124569999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-------CCCHHHH---
Q 010936 99 LDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-------KMPWSEK--- 166 (497)
Q Consensus 99 L~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~--- 166 (497)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+|||.|++.++.+. .....++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998754568999999997532 2467999999999999999999999998765221 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 167 ---------------------RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 167 ---------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
...++++++.+||++++||.+|+..+++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHH
Q 010936 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304 (497)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~ 304 (497)
|+.++.++++.|+++++ .|+|||+++|||.++++++||+|++|++|+++|+|+++++.+||+++|+.||++.||+||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987 59999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhcc---cCccccCCCCCCc
Q 010936 305 RCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQAS 381 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s 381 (497)
++++...... . +.....|.... ..+++.+.|+.+..++...+.+...... .......+.|..+
T Consensus 448 ~v~s~~~~~~--~--------~~~~~~p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 448 EVTSKKDQEQ--Y--------WADRNKPYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred HhcCchhhhh--h--------hhccCCccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 8876432110 0 00011111111 1235778888887666555444322111 1111123568899
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010936 382 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFV 458 (497)
Q Consensus 382 ~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~---~~~~~~~g~lff~~~~~~f~~~~~~~~~~ 458 (497)
++.|++.|++|++++++||+.++..|+++.+++|+++|++||+++.++ .+.+.+.|++||++++++|.++++++.++
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997543 34567788899999999999988888888
Q ss_pred hHhhh-------cceeechhHHHHHhHhcccch
Q 010936 459 EDMKV-------SLLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 459 ~~r~~-------~~~~~~p~~~~~~~~~~~~~~ 484 (497)
.+|++ ..|.-+++.+++.+-+.|+.+
T Consensus 594 ~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~ 626 (1470)
T PLN03140 594 QRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISI 626 (1470)
T ss_pred hccchhHHhhhccCcCHHHHHHHHHHHHHHHHH
Confidence 88887 334444556677777888776
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=514.93 Aligned_cols=402 Identities=30% Similarity=0.509 Sum_probs=340.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
.++|+|+|+-++||+++.++||+||||||||++|+|-++.....+|+|.+||.+.+. .++.++|++|+|.++|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999987655567899999987543 246799999999999999999
Q ss_pred HHHHHHhhccCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 147 ETISYSARLRLPDK----MPWSEKRT-LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 147 e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
|+|.|+++++.+.. ..+.++.+ ..+.+++.+||++|+||+||+...+++||||||||+||.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987632 22333222 57789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCch
Q 010936 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~ 300 (497)
|+|||+.++.++++.|+++++ .+.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+++
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 999999999999999999998 4899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhccc---CccccCCC
Q 010936 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK---GTVLDAGG 377 (497)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~ 377 (497)
||+.++++.. +. ...+.....+..... ..++.+.|..++.+.+....++...... ......+.
T Consensus 368 DfLt~vts~k-~~---------~~~~~~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~ 433 (1391)
T KOG0065|consen 368 DFLTEVTSKK-DQ---------EQYWNKRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSK 433 (1391)
T ss_pred HHHHHhhcCc-cc---------cccccccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCc
Confidence 9998887621 10 001111222222222 2357788888888888776666543221 12223678
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010936 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPS 456 (497)
Q Consensus 378 ~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~-~~~~~~~~~~g~lff~~~~~~f~~~~~~~~ 456 (497)
|..++|.|++.|++|.|+.+.||..++..++++.+++|+++|++||+.+ .+..+.+.|+|++||++++.+|.++++++.
T Consensus 434 y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 434 YSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred eeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 888889999999999999999999999999
Q ss_pred HHhHhhh----cceeechhHHH---HHhHhcccch
Q 010936 457 FVEDMKV----SLLIFYPTAVA---KFIKRGVINI 484 (497)
Q Consensus 457 ~~~~r~~----~~~~~~p~~~~---~~~~~~~~~~ 484 (497)
.++.|++ +.+.+||.++. -.+-+.|..+
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~ 548 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSF 548 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHH
Confidence 9999999 56666665533 2344666655
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=412.30 Aligned_cols=217 Identities=31% Similarity=0.438 Sum_probs=199.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++||+++| +..++|+|||++|++||+++|+|||||||||||+||+|+..++ +|+|.++|.+..
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHH
Confidence 58999999999 5788999999999999999999999999999999999999986 999999997542
Q ss_pred CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 125 ~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..++++|+|||+.+|||++||.||+.++...- .+.++++.++++.++|+++||.+.+|. ||.+|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHH
Confidence 12467999999999999999999999986432 256788888999999999999998876 77899999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|+++|+|||||+|||+...++++.+++|+++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++++
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 6899999999999999999999988753
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=399.90 Aligned_cols=227 Identities=25% Similarity=0.435 Sum_probs=205.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
+++++|+|+.| .++.+++|+||+|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++..
T Consensus 1 MI~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 1 MIEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72 (309)
T ss_pred Cceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHH
Confidence 37899999999 4688999999999999999999999999999999999999996 9999999998643
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.||||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||+. +.++ +|++|||||+|||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRV 144 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRV 144 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHH
Confidence 2478999999999999999999999987765 5678888999999999999974 4444 8899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
.+||||+.+|++||||||+++|||.++.++.+.++++.++ |+|||++|||. +|+..++|||.+|++|+++.+++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 99999999995 799999999999999999999999987
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHh
Q 010936 283 FEFFAQAGFPCPALRNPSDHFLRCI 307 (497)
Q Consensus 283 ~~~f~~~g~~~~~~~~~~d~~~~~~ 307 (497)
+. ||++.|....
T Consensus 224 l~-------------~Pan~FV~~f 235 (309)
T COG1125 224 LA-------------NPANDFVEDF 235 (309)
T ss_pred Hh-------------CccHHHHHHH
Confidence 64 6666666543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=411.08 Aligned_cols=221 Identities=27% Similarity=0.392 Sum_probs=201.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
+|+++++++.|.....+...+|+|||++|++||++||+|.||||||||++++.++..|+ +|+|.++|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHH
Confidence 37899999999643223457999999999999999999999999999999999999996 999999998742
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+++||++||+.+|+...||+||+.|.+.+. +.++++.++++.++|+.+||++..+. ||.+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhH
Confidence 12468999999999999999999999998875 47788999999999999999988776 778999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||++ +-+.++||||.+|++|++++.|+..+
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999999875 99999999995 78999999999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
++
T Consensus 229 vF 230 (339)
T COG1135 229 VF 230 (339)
T ss_pred hh
Confidence 64
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=389.55 Aligned_cols=220 Identities=33% Similarity=0.469 Sum_probs=200.8
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...|++++|++++ +++.|++||||+|++||+++|+||||+|||||||+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCH
Confidence 4569999999999 6789999999999999999999999999999999999999996 9999999997521
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGe 199 (497)
.++++|++||...||..|||+||+.|..+-+ ...+++..++.+..-|+.+||... ++ .+|.+|||||
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM 150 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAAD-----LYPSELSGGM 150 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhh-----hCchhhcchH
Confidence 1367999999999999999999999986654 356788888889999999999765 43 4788999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
+||++||||++.||+|+|+||||+||||.++..+-++|+++.+. |.|+|++|||. ++++.+||++++|.+|++++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999886 99999999995 68999999999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=392.87 Aligned_cols=204 Identities=32% Similarity=0.425 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.+.++++++.| +...+|+|||++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+.......+
T Consensus 3 ~l~i~~v~~~f-----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEe-----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCCE
Confidence 58899999999 3478999999999999999999999999999999999999996 999999999875555789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+||||++.++|.+||.||+.++.... ..++++.++++.++|+.+||.+..|. +|++|||||||||+|||||+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 99999999999999999999998765 24566677799999999999988876 78899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|+||+||||+++||+.++..+.+.|.++.+ .++||+++|||. +|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999876 489999999996 7899999999999984
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-51 Score=409.07 Aligned_cols=220 Identities=37% Similarity=0.521 Sum_probs=197.5
Q ss_pred EEEEEeEEEEEEccCCc-ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
.++++||++.| + .+.+|+||||++++|+++||+||||||||||||+|+|++.|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 47889999999 4 578999999999999999999999999999999999999996 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++++||+||++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..++++ ++||+||||||+|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHH
Confidence 2467999999999999999999999999987432 2445678999999999998555544 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+||+++|++|||||||+||||.++.++++.|++++++| +||++|||++ .++..+||+|++|++|++++.|+++++..
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999986 8999999996 68999999999999999999999888766
Q ss_pred HHH
Q 010936 285 FFA 287 (497)
Q Consensus 285 ~f~ 287 (497)
.+.
T Consensus 227 ~~~ 229 (293)
T COG1131 227 KFG 229 (293)
T ss_pred hhc
Confidence 543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=398.03 Aligned_cols=219 Identities=35% Similarity=0.444 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||++.| +++.+|+|+||++++|++++|+||||||||||||+|+|+++|. +|+|+++|+++..
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHH
Confidence 58999999999 4688999999999999999999999999999999999999986 9999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++||||.+...+.+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+. +|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHH
Confidence 2367999999998888899999999985432211 11123334578999999999999998764 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+++|++||||||||.||..++.+++++++++++ +|+|||+++||+ +.+.++||++++|++|+++..|++++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999996 599999999996 6899999999999999999999998876
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=386.23 Aligned_cols=209 Identities=32% Similarity=0.477 Sum_probs=183.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------- 124 (497)
++++||++.|..+.. ...+|++|||+|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHH
Confidence 568999999865432 267999999999999999999999999999999999999996 999999998642
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.+++.+|||+|+.+|.|.+||.||+.+.+.+. ..+....+++++++++.+||.+..+. .+|.+||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQR 150 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQR 150 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHH
Confidence 12467999999999999999999999987654 22333566778899999999876652 2567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|+|||||+.+|+++|+||||.+||+.++..|+++|++++++ |+|||++|||+ ++..+|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999875 99999999995 68999999999999984
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=406.50 Aligned_cols=217 Identities=29% Similarity=0.465 Sum_probs=200.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhH
Confidence 58999999999 2222999999999999999999999999999999999999996 9999999998643 34
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.+++|||+..|||+|||+||+.|+++.+ ..++++.++++.++.+.++|++..|+ +|++|||||||||+|||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHH
Confidence 78999999999999999999999998875 56788889999999999999999988 46789999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+++|+++|||||.|+||...+..+...|+++.++ |.|+|.+|||. .|+..++|||.+|++|++...|++.++..
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999999999999999999999999999999875 99999999995 68999999999999999999999998753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=387.38 Aligned_cols=218 Identities=30% Similarity=0.467 Sum_probs=189.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--c
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~ 127 (497)
..|+++|+++.|. .+++|+||||++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+.... .
T Consensus 3 ~~i~v~nl~v~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccC
Confidence 3589999999993 236999999999999999999999999999999999999996 99999999875433 3
Q ss_pred CcEEEEcCCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 128 GTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 128 ~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.+||||||.. .-|| +||+|.+.++...+.. ...+ +..++.++++|+.+|+.+.+|+.+| +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 6799999964 3345 6999999998443221 1122 2336789999999999999999887 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+ ..+.++||+|++|+ +++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999999999999999996 68999999999995 678899999887
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 53
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=408.41 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
..++++||++.| ++..+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 358999999999 4688999999999999999999999999999999999999996 9999999998642 3
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.+|+|||+-.|||+|||+||+.|+++.+ ....+++.++++.++++.++|.+..++ ++.+|||||+|||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHH
Confidence 578999999999999999999999998743 234456788899999999999998776 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||. .|+..++|||.+|++|++.-.|+++++-
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 9999999999999999999999999999999999875 99999999995 7999999999999999999999999873
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=372.30 Aligned_cols=218 Identities=31% Similarity=0.425 Sum_probs=200.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC----CC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----LS 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----~~ 126 (497)
++++.+++++|+ ...++++||||+++.||++||+|||||||||+|++|++++.|+ +|.|+++|.+.. ..
T Consensus 1 Ml~v~~l~K~y~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 1 MLEVTDLTKSYG----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred Ceeeeehhhhcc----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHH
Confidence 378899999994 2345999999999999999999999999999999999999996 999999998742 23
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++++|.++.+..+|..||++|||.|.+.+. ++...+.+++++++.+.|+|.++.|+.+| ++|.||||||+||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iA 145 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIA 145 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHH
Confidence 578999998889999999999999999886 56778888999999999999999999887 5999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||+++|++++|||||||||..++..+.+.+++++++|++||++||.. .++..+||+|++|++|++++.|+++++..
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999998999999999995 79999999999999999999999987654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=389.53 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=199.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ecCC-
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~- 125 (497)
|+|.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|+..|+ .|.|.+||+ +.+.
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhcc
Confidence 458889999988 4678999999999999999999999999999999999999996 999999999 4322
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..++||||+|+..+|++|||.+|+.|++..+ ....+..+.+.++.++|+.+.|++..++ ||.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHH
Confidence 2468999999999999999999999998776 2234567788999999999999987776 7889999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++||||||+++||..-+.++.+.|+++.+. |.|++++|||+ ++++++||||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999876 99999999996 799999999999999999999999987
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 53
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=377.53 Aligned_cols=222 Identities=28% Similarity=0.400 Sum_probs=195.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
+.|+++||++.|+ +++++|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchH
Confidence 4699999999996 4688999999999999999999999999999999999999886 9999999976421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (497)
.++++||++|+++|.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+++|+.+.+.++.+ +||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCC
Confidence 1467999999999999999999999885433221 22234455678889999999988877654 699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
|||+|||+|||||+.+|+|+|.|||+++|||.++..+++.|+++++ +|.|||++.|+. +.+.++||||+-|++|+++|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999999987 599999999995 78999999999999999999
Q ss_pred EeCchhHHH
Q 010936 276 FGETSAAFE 284 (497)
Q Consensus 276 ~G~~~~~~~ 284 (497)
.|+++++.+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999988654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=393.74 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.++++||++.| +++.+|+||||++++||++||+||||||||||+++|+|+++|+ +|+|+++|.+... .
T Consensus 7 ~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 8999999997532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.+||+||++.+++.+||+||+.|.+..+ ..+..+...+++++++.++|.+..++.++ +|||||||||+||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 150 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLA 150 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876653 23344455678899999999988888664 6999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987899999999995 68999999999999999999999988754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=394.93 Aligned_cols=219 Identities=26% Similarity=0.391 Sum_probs=193.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|..+ ...+.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999999421 11357999999999999999999999999999999999999986 9999999997532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|+||+..+++.+||+||+.+..... ..+..+.++++.++++.+||.+..|. ++.+|||||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV 149 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 1357999999999999999999999976543 23455666788999999999887776 4568999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||++||++ +.+.++||+|++|++|++++.|+++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999875 99999999995 678899999999999999999998876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=357.43 Aligned_cols=212 Identities=29% Similarity=0.387 Sum_probs=192.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
+|+|+|+++.|. ..+.+|+||||.+++||++-|+||||||||||||+|.+..+|+ .|+|+++|.++.
T Consensus 1 mI~f~~V~k~Y~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 1 MIRFENVSKAYP----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73 (223)
T ss_pred CeeehhhhhhcC----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccc
Confidence 378999999995 3477999999999999999999999999999999999999996 999999999742
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+++||+|+||..+.+..||+||+.|+.... +.+..+.++++.++|+.+||.+.++. .|.+|||||+||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQR 145 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQR 145 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHH
Confidence 12478999999999999999999999998765 56678889999999999999987765 567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+||||++++|++||.||||.+|||..+.+|++++.++.+.|.||+++||| ...+..+-.|++.|++|+++....
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999999999999999999 467778888999999999987543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=396.02 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=195.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 9999999987532 24
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987543 344566677899999999999888764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++ .++..+||+|++|++|+++..|+++++..
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999775 99999999996 68999999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=396.35 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=194.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++|+++.|. +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999983 2367999999999999999999999999999999999999986 9999999997532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|++.+||++||+||+.|+...+ ..+..+..++++++++.+||.+..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 234556667899999999998887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999875 99999999996 6899999999999999999999998864
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=362.79 Aligned_cols=222 Identities=27% Similarity=0.400 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~-- 125 (497)
..++++||++.| +++++|+|||+.|++++++||||||||||||||+++..... |+...+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 458999999999 57899999999999999999999999999999999998764 445678999999997522
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++++|+|||.|+.|| +|++||+.|+.++. +...++.++.++..|+...|++.-..++. ..+.+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDEVKDRLH-KSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCChhHH
Confidence 2578999999999999 89999999998876 23336778889999999999754333332 25668999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++|||||+.+|+|||||||||+|||.+...|-++|.+|++ .-|||++||.+ ..+.++.|+..++..|+++++|+.+
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 999999999999999999999999999999999999999985 58999999995 6899999999999999999999998
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
+++
T Consensus 234 ~iF 236 (253)
T COG1117 234 KIF 236 (253)
T ss_pred hhh
Confidence 764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=367.64 Aligned_cols=220 Identities=29% Similarity=0.389 Sum_probs=190.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|..++. ..++|+||||++.+||++||+|+||||||||.++|+|+.+|+ +|+|.++|.+...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccc
Confidence 46899999999954321 125999999999999999999999999999999999999996 9999999976422
Q ss_pred --CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHH
Q 010936 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 --~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGer 200 (497)
..+.+.+||||+ .+.|..||++.|.-+.... +.++.+ +++.++++.+||.+. +++ +|.+||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~~--~~i~~~L~~VgL~~~~l~R-----~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQ--QRIAELLDQVGLPPSFLDR-----RPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHHH--HHHHHHHHHcCCCHHHHhc-----CchhcChhHH
Confidence 356799999997 5789999999998876542 333333 449999999999754 333 7889999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||++|||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|++|||. ..+..+||||++|++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999885 89999999995 689999999999999999999999
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 88754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=391.64 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=195.1
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...|+++||++.| +++.+|+||||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3469999999999 3567999999999999999999999999999999999999986 9999999997532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.+||+||++.+++.+||.||+.+....+ ..+..+..++++++++.++|.+..++.++ +|||||||||+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~ 182 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLT 182 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHH
Confidence 2357999999999999999999999866543 22334445667889999999988888664 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999987899999999995 68999999999999999999999988754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=393.52 Aligned_cols=216 Identities=25% Similarity=0.453 Sum_probs=195.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.. ..
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 9999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++ +++.|||||||||+|||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVALAR 149 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987643 24456667789999999999887776 45689999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999775 99999999996 6899999999999999999999998864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=393.89 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=194.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCce--eEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~--G~I~~~G~~~~~--- 125 (497)
.|+++||++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 38899999999 3467999999999999999999999999999999999999986 7 999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +++|||||||||+|
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvaL 148 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRIAI 148 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHHHH
Confidence 2367999999999999999999999987543 244556677899999999999888775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 79999999995 6899999999999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=371.39 Aligned_cols=215 Identities=31% Similarity=0.482 Sum_probs=187.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhH
Confidence 4689999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.++..... ..+..+..+++.++++.+||.+..++.+ .+|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 145 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRV 145 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 13569999999999999999999998754221 2234445567888999999987776654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||++++|++|++++.|+++++
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999999874 89999999996 578899999999999999999987764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=390.62 Aligned_cols=220 Identities=25% Similarity=0.369 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
|.|+++|+++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|++... .
T Consensus 1 ~~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 1 MSIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHAR 72 (353)
T ss_pred CEEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 358999999999 3467999999999999999999999999999999999999886 8999999997532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.++||+|++.+||++||+||+.|+...... ...+..+..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 147 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVAL 147 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 35799999999999999999999998653211 1234455667899999999998877764 46799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..+||+|++|++|++++.|+++++.
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999876 89999999996 6899999999999999999999998874
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=392.39 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=194.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 358999999999 3467999999999999999999999999999999999999986 8999999997532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++||+|++.+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 367999999999999999999999986543 234555567789999999999887774 467999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999875 99999999996 6899999999999999999999998864
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=382.27 Aligned_cols=218 Identities=29% Similarity=0.398 Sum_probs=191.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
+.|+++|+++.| +++.+|+||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 468999999999 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.+ .+|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~l 146 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTL 146 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 1357999999999999999999998765432 2233444566788999999988877765 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 147 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 147 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999987899999999996 68889999999999999999999988653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=370.60 Aligned_cols=218 Identities=30% Similarity=0.432 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.++++|+++.|+. ...+|+|+|+++++|+.++|+|+||||||||+++|+|+++|. +|.|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHH
Confidence 5889999999952 268999999999999999999999999999999999999996 899999998743
Q ss_pred CCcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 125 LSFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 125 ~~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..++.+|||+|++. .+..-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++ .+..|||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRv 147 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRV 147 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeH
Confidence 23578999999973 233459999999997654 56677889999999999999998776 5578999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||.+|+.+|++|+|||||||||+..+.++++.+++|.++ |+|+|++|||. +.+..+||++++|++|+++++|++.++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999987 79999999995 789999999999999999999998776
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 227 ~~ 228 (235)
T COG1122 227 FN 228 (235)
T ss_pred hh
Confidence 54
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=362.99 Aligned_cols=216 Identities=31% Similarity=0.420 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++++|+++.|.... ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcEE
Confidence 46899999983110 1157999999999999999999999999999999999999885 8999999987654446799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|++.+++.+||+||+.+....+ ........+.+.++++.+||.+..++.+ ..||||||||++||+||+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 1233344567889999999987766644 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee--CCeEEEEeCch
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (497)
+|+++||||||+|||+.++..+++.|+++.+ .|+|||++||++ .++.++||++++|+ +|++++.++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999865 489999999996 57889999999999 79999888753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=363.73 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHh
Confidence 4689999998 3467999999999999999999999999999999999999885 9999999986431 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++.+ ..|||||||||+||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~ 144 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIAR 144 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999999999999999875442 2233444567889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|+++..|++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999999876 89999999996 67889999999999999999888765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=361.97 Aligned_cols=209 Identities=34% Similarity=0.493 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhc
Confidence 46889999983 467999999999999999999999999999999999999885 9999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+..... ........+++.++++.++|.+..++.+ ..|||||||||+||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARA 144 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 1233344567889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987 489999999996 6788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=388.26 Aligned_cols=217 Identities=27% Similarity=0.396 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
..|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 18 ~~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 359999999999 3467999999999999999999999999999999999999986 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.+|||+|++.+||++||.||+.|+...+ ..+..+.++++.++++.++|.+..++ ++.+|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHH
Confidence 467999999999999999999999986543 23455667789999999999887776 4568999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999876 499999999996 6899999999999999999999998864
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=366.23 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=188.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
|.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 1 MSIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72 (239)
T ss_pred CEEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 3589999999993 467999999999999999999999999999999999999885 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.++|++|++.+++.+||.||+.++...... ......+..+.++++++.+||.+..++.+ .+|||||||||+|
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 147 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVAL 147 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHH
Confidence 35699999999999999999999987543211 00122334456788999999987766644 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999999875 89999999996 678899999999999999999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=377.81 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=192.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.++++|+++.| +++.+|+|+||++++||++||+|||||||||||++|+|+++|+ +|+|.++|.+... .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHH
Confidence 58999999999 3467999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.+||+||++.+++.+||.||+.+.+.++ +.+..+..++++++++.+||.+..++.+ +.|||||||||+||
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la 145 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLA 145 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999877653 2334445567889999999998888765 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+||+++|++|||||||+|||+.++..+++.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.+++..
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 79999999996 68999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=387.57 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=192.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhH
Confidence 48999999999 3467999999999999999999999999999999999999986 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|+..+++.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999986543 2334555677899999999988777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ +++..+||++++|++|+++..|+++++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999775 89999999996 6889999999999999999999998764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=408.65 Aligned_cols=250 Identities=30% Similarity=0.452 Sum_probs=212.0
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
|++.+|++|++|+.+.+|..+-. +...|. ...-.|+|+||++.|+.+ ++.+||+|+||+++
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~--G~~~p~---------------~~~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~ 492 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLT--GTLAPD---------------HLQGVIEFEDVSFAYPTR--PDVPVLKNLSFTIR 492 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCC--Cccccc---------------cccceEEEEEeeeecCCC--CCchhhcCceeeeC
Confidence 68999999999999999997531 211110 123359999999999764 46789999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
|||++||+||||+||||+.++|..++.|. +|+|.+||+|++. .+++||+|.|+|.||.. ||+|||.|+..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~- 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD- 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-
Confidence 99999999999999999999999999996 9999999999643 24789999999999998 99999999965
Q ss_pred cCCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 156 RLPDKMPWSEK-----RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 156 ~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
..+.++. .+.+++.+ .++++.+||.||+ +..+||||||||++|||||++||.||||||.||+||.++.
T Consensus 568 ----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 ----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred ----CCCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 2233333 23344444 3678889999997 6678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..+.+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+.+|++.
T Consensus 641 ~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 641 YLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999998866 599999999964 568899999999999999999888764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=363.84 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=186.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.| +.+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHH
Confidence 4688999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++|++.+++.+||+||+.+....+ .....+...+++++++.+++.+..++.+ ..|||||||||+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 144 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEI 144 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHH
Confidence 1245999999999999999999999875432 1223344567889999999987777654 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+.+++
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999987789999999996 578999999999999999999987764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=383.90 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=191.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|..+ ...+++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999999421 11367999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+..... ..+..+.++++.++++.+||.+..++. +.+|||||||||
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 149 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999976543 233445556788999999998777764 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999775 89999999996 678899999999999999999998876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 4
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=364.83 Aligned_cols=217 Identities=29% Similarity=0.404 Sum_probs=186.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. ++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHH
Confidence 46789999983 457999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
....++|++|++.+++.+||+||+.+......... ....+..+.+.++++.+||.+..++.+ ++||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYG 147 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHH
Confidence 12459999999999999999999998754321110 012344567889999999987776644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999987889999999996 67889999999999999999998
Q ss_pred chhH
Q 010936 279 TSAA 282 (497)
Q Consensus 279 ~~~~ 282 (497)
++++
T Consensus 227 ~~~~ 230 (236)
T cd03219 227 PDEV 230 (236)
T ss_pred HHHh
Confidence 8765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=360.89 Aligned_cols=207 Identities=27% Similarity=0.383 Sum_probs=179.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHH
Confidence 789999999941 1246999999999999999999999999999999999999885 8999999987521
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||.||+.+..... .....+..+++.++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 147 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRV 147 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875532 2233344567889999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++..+||++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999977799999999996 678889999999999974
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=373.70 Aligned_cols=231 Identities=26% Similarity=0.389 Sum_probs=194.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccccc
Confidence 7899999999421111236999999999999999999999999999999999999886 9999999987521
Q ss_pred ---CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 010936 126 ---SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ---~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++||+|++ .+++ .||.||+.|+.... ..+..+.+.++.++++.+||. +..++ .++.|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHH
Confidence 135699999986 5565 59999999876432 234555667889999999996 35555 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999987799999999996 678899999999999999999999
Q ss_pred hhHHH---HHHhcCCCCCC
Q 010936 280 SAAFE---FFAQAGFPCPA 295 (497)
Q Consensus 280 ~~~~~---~f~~~g~~~~~ 295 (497)
+++.. .+...|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 88753 34556666554
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=372.15 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|.......+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccH
Confidence 48899999998421111257999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGer 200 (497)
..+.+|||||++. .+..+||+||+.|+.... ..+..+..+++.++++.+||. +..++ +++.||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~ 150 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQK 150 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHH
Confidence 1357999999973 233469999999875432 244555667789999999996 45565 4567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||++||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++..+||+|++|++|++++.|++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999875 99999999995 678899999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=378.02 Aligned_cols=205 Identities=28% Similarity=0.428 Sum_probs=182.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEcCCCCCCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~l 143 (497)
++.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 467999999999999999999999999999999999999986 8999999987532 134699999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010936 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
||+||+.+.+..+ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+++|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2334445567899999999988777755 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999987899999999996 68899999999999999999999988654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=362.14 Aligned_cols=218 Identities=26% Similarity=0.391 Sum_probs=187.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|.... ..+++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 78999999984110 0127999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+|++||+.+....+ ..........+.++++.++|.+..++.+ ..|||||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 149 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRV 149 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHH
Confidence 1356999999999999999999999875432 2233444567889999999987776644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.+++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 89999999996 678899999999999999999987664
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=356.90 Aligned_cols=209 Identities=27% Similarity=0.423 Sum_probs=182.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccc
Confidence 46899999983 467999999999999999999999999999999999999885 9999999987532 234
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~lara 144 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRA 144 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 2234445567888999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999874 89999999996 6788999999999999998875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=358.40 Aligned_cols=215 Identities=33% Similarity=0.501 Sum_probs=185.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.|.. ..+++|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHh
Confidence 468899999831 1267999999999999999999999999999999999999885 9999999987532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.++|.+..++.+ .+|||||||||+||+
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 146 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAI 146 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875443 2233344567889999999987777654 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ ..+.++||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999976 59999999996 578889999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=373.96 Aligned_cols=221 Identities=24% Similarity=0.339 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++|+++.|..+......+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccc
Confidence 48999999999432111236999999999999999999999999999999999999986 899999986531
Q ss_pred -----------------------CCcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 010936 125 -----------------------LSFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (497)
Q Consensus 125 -----------------------~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (497)
...+.+|||+|++ ..+...||+||+.|+.... ..+..+..+++.++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 1134689999985 2333469999999875432 344556667889999999996
Q ss_pred -ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 181 -DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 181 -~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
+..++ ++..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +.+.
T Consensus 156 ~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 156 ESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 56665 4567999999999999999999999999999999999999999999999987799999999995 6788
Q ss_pred hcCCeEEEeeCCeEEEEeCchhHH
Q 010936 260 ELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 260 ~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++||+|++|++|++++.|+++++.
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999998865
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=353.33 Aligned_cols=219 Identities=26% Similarity=0.445 Sum_probs=197.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.+..+||.++| ++++++++||+++++||++|++|||||||||.+.++.|+.+|+ +|+|.+||.++..
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHH
Confidence 58899999999 4688999999999999999999999999999999999999997 9999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.+..+||+||++..|-.|||+||+......+.. .....+.+.+++++|+.|+|.+.++.+- ..||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHH
Confidence 124589999999999999999999998876532 2223455667889999999999998854 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||||+.+|+.++||||++|+||.+..+|.++++.|+..|..|+++-|+. .|...+|||.+++++|+++++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999996 58999999999999999999999998754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=370.80 Aligned_cols=220 Identities=25% Similarity=0.324 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|.......+++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48899999999421111256999999999999999999999999999999999999886 8999999987531
Q ss_pred ----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 010936 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (497)
..+.++||+|++ .+++ .||+||+.|+.... ..+..+..++++++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGG 149 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHH
Confidence 124699999986 4554 69999999875432 234555556789999999996 455654 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||||++|++|++++.|
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999775 99999999995 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 229 ~~~~~~ 234 (290)
T PRK13634 229 TPREIF 234 (290)
T ss_pred CHHHHh
Confidence 988764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=356.71 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=183.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|... ....++|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHH
Confidence 6889999998421 01126999999999999999999999999999999999999885 9999999987532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ ..||||||||++|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 149 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIAR 149 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHH
Confidence 56999999999999999999998865432 2334455667889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999977799999999996 6788999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=354.72 Aligned_cols=209 Identities=29% Similarity=0.507 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i 130 (497)
++++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccE
Confidence 4689999998 2467999999999999999999999999999999999999885 9999999986532 23579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||+||+.+....+ .....+..+.+.++++.+||.+..++.+ .+|||||||||+||++|+
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999875443 2233444567889999999987776644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987789999999996 5788899999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=355.87 Aligned_cols=219 Identities=26% Similarity=0.441 Sum_probs=204.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~ 129 (497)
.+++++|+++| +++.+++|+||.+++|+++|++|||||||||++++|.|++.|+ +|+|.++|.+... ...+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhh
Confidence 58899999999 6789999999999999999999999999999999999999996 9999999998654 3467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
|||+|.+..|||.+||.|.|.|.+.++ +++.++.+..++.+|+++++......+| .+||.|++|++.+..++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisav 145 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAV 145 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999987 7888999999999999999988877765 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
+++|++++||||+|||||.+...+.+.+.+++++|.|||+|+|.. ..+.++||++++|++|+.|.+|+.+++...|
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999995 7899999999999999999999999987644
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=361.18 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++||++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYP----NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecC----CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 46889999883 1267999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++.+||+||+.+...... ..........+++.++++.++|.+..++. +.+||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 148 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGG 148 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHH
Confidence 12469999999999999999999987642110 00111123345678899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999999764 89999999996 5788899999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=357.46 Aligned_cols=208 Identities=32% Similarity=0.451 Sum_probs=177.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|.... ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHH
Confidence 46899999984210 0157999999999999999999999999999999999999885 8999999987531
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|++.+++.+||+||+.+....+ ........+.+.++++.+||.+..++.+ +.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 148 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQR 148 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHH
Confidence 1246999999999999999999999876543 1223344567889999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ .++. +||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999987 589999999996 4565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=339.66 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
+.+++++++|. +.-=..+++|..||++||+||||||||||||+|+|+..|. +|+|++||++... ..+
T Consensus 2 l~L~~V~~~y~-------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYG-------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeC-------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccC
Confidence 56678888882 1234678999999999999999999999999999999996 9999999997432 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
-++.++|+.++|.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.++. |.+|||||||||+|||+
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARc 143 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARC 143 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHH
Confidence 68999999999999999999999854221 12 345567899999999999988875 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+++-+||+||||+|+|||.-+.++..++.+++.+ +.|++++||+| +++..++|+++++++|+|.+.|+.++.+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999999874 89999999997 6899999999999999999999988754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=375.47 Aligned_cols=224 Identities=26% Similarity=0.387 Sum_probs=191.9
Q ss_pred eEEEEEeEEEEEEccCC--------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 50 ARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
..|+++||++.|..+.+ ....+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|+++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCE
Confidence 46999999999953211 1356999999999999999999999999999999999999885 899999998
Q ss_pred ecCC--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCc
Q 010936 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNW 190 (497)
Q Consensus 122 ~~~~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 190 (497)
++.. .++.++||+|++ .++|.+||.||+.+......+ ..+..+.++++.++++.+||. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~----- 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR----- 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC-----
Confidence 7531 135799999997 588999999999987543211 234556667788999999994 34444
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
++++|||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+ ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 66789999999999999999999999999999999999999999999999875 99999999995 67888999999999
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (331)
T PRK15079 237 LGHAVELGTYDEVY 250 (331)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=356.77 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.| +.+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGY-----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeec-----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHH
Confidence 4689999988 2457999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.+...... ..+....+.++++.+ ++.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHH
Confidence 13469999999999999999999998754321 122344566778877 576666654 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999987789999999996 678899999999999999999987664
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=359.02 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=182.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCceeEEEECCEecCC-
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~-----~~~~~~~G~I~~~G~~~~~- 125 (497)
|+++||++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY-----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 4689999998 3457999999999999999999999999999999999998 664 8999999987421
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++.++ .+||+||+.++..... .....+.++++.++++.+||.+..++.+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 134699999999888 7899999998754321 11122245678889999999876655420 36799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ +|||++||++ +++.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999877 9999999996 578899999999999999999987
Q ss_pred hh
Q 010936 280 SA 281 (497)
Q Consensus 280 ~~ 281 (497)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=380.31 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=183.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------CcCcEEEEcCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDDN 138 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~ 138 (497)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|. +|+|+++|.++.. .++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 467999999999999999999999999999999999999986 9999999997532 1457999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 010936 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (497)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllL 218 (497)
+||++||+||+.|..... ..+..+..+++.++++.+||++..++ ++..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 34455666789999999999877776 4557999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||++||+.++..+.+.|.++.++ |+|||++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999764 89999999995 6889999999999999999999988865
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=355.78 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=197.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..+++++|++.| +.-.+++||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 3 PLLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPH 74 (250)
T ss_pred ceeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHH
Confidence 357899999999 5688999999999999999999999999999999999999996 8999999998532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--------PD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
.+..++-.||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..| +
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~ 149 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----N 149 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----c
Confidence 13457889999999999999999999865331 11 11245667788999999999999999877 5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+||+||+.|||||+.+|++|+||||.+||.+....++.+.|++++++ |.||+++.||. ..+..+||||++|+.|++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEV 228 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcC
Confidence 9999999999999999999999999999999999999999999999984 79999999995 789999999999999999
Q ss_pred EEEeCchhHHH
Q 010936 274 VYFGETSAAFE 284 (497)
Q Consensus 274 v~~G~~~~~~~ 284 (497)
++.|+|+++.+
T Consensus 229 IAeG~P~eV~~ 239 (250)
T COG0411 229 IAEGTPEEVRN 239 (250)
T ss_pred cccCCHHHHhc
Confidence 99999998753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=358.63 Aligned_cols=215 Identities=26% Similarity=0.387 Sum_probs=187.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHH
Confidence 68999999983 467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++.+||+||+.++..... .....+..+.+.++++.+||.+..++.+ ..|||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHH
Confidence 13469999999999999999999988642111 2234445567889999999987666644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+.+++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987799999999996 678889999999999999999987765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=364.97 Aligned_cols=217 Identities=25% Similarity=0.418 Sum_probs=188.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.| +.+.+|+||||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 6 NLVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRS 77 (269)
T ss_pred ceEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChh
Confidence 358999999998 3467999999999999999999999999999999999999885 8999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++.+||.||+.+...... ........+.+.++++.+||.+..++.+ ..|||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~q 150 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMAR 150 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHH
Confidence 12469999999999999999999998643211 1233344556788999999987777654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 89999999995 6788999999999999999999887
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 230 ~~ 231 (269)
T PRK11831 230 AL 231 (269)
T ss_pred HH
Confidence 65
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=360.68 Aligned_cols=216 Identities=30% Similarity=0.409 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccccc
Confidence 489999999993 457999999999999999999999999999999999999885 8999999986421
Q ss_pred --------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++.+||.||+.++..... ........+++.++++.+||.+..++. ++.|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 147 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSG 147 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCCh
Confidence 12468999999999998999999988643211 123334456788899999998766664 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++ .++.++||++++|++|++++.|
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999996 6788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 88765
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=359.69 Aligned_cols=214 Identities=27% Similarity=0.459 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 52 LTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
++++|+++.|. . +.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYG-----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeC-----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHH
Confidence 46889999983 3 56999999999999999999999999999999999999885 8999999987432
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+..... .....+..+.+.++++.+||.+ ..++ .+..|||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHH
Confidence 1346899999999999999999999875432 2233444567889999999985 5555 4467999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+++++
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 89999999996 578899999999999999999987765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=382.83 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=191.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHH
Confidence 58999999999 3578999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++||+|++.+++.+||+||+.++...+... .......+++++++++.+||.+..++.+ ++|||||||||+
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~ 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVL 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1357999999999989999999999864321100 1112334567899999999988887755 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987789999999995 6889999999999999999999998754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=368.41 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=187.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
|.++++||++.|..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKD 77 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 358999999999421111246999999999999999999999999999999999999986 8999999987521
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
.++.+|||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++ .+..|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSG 148 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCH
Confidence 135699999986 4565 49999999875432 234455567789999999996 55665 4467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976 499999999995 678899999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 228 g~~~~~~ 234 (286)
T PRK13646 228 TSPKELF 234 (286)
T ss_pred CCHHHHH
Confidence 9988764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=361.84 Aligned_cols=218 Identities=29% Similarity=0.385 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHH
Confidence 67899999883 1467999999999999999999999999999999999999885 8999999987431
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--P---DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++.+||+||+.++..... . ......+..+++.++++.+||.+..++. +..||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 149 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGG 149 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 13469999999999999999999987532100 0 0011223346788899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999764 89999999996 5788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=370.63 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=192.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|..+....+.+|+||||+|++|+++||+|+||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 369999999999522111246999999999999999999999999999999999999986 8999999976421
Q ss_pred -----------------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 010936 126 -----------------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185 (497)
Q Consensus 126 -----------------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 185 (497)
.++.++||+|++ .+++. ||+||+.|+.... ..+..+..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 135699999987 46664 9999998875322 234445556788999999996 45555
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010936 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 186 ~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++
T Consensus 173 -----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 -----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 4567999999999999999999999999999999999999999999999987799999999995 5788999999
Q ss_pred EEeeCCeEEEEeCchhHHH---HHHhcCCCCC
Q 010936 266 YLLSGGKTVYFGETSAAFE---FFAQAGFPCP 294 (497)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 294 (497)
++|++|++++.|+++++.. .+...++..|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999987642 3344444433
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=363.93 Aligned_cols=216 Identities=27% Similarity=0.356 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 589999999983 1356999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .++.+||.||+.|+.... .....+.++++.++++.+||.+..++.+ ..|||||||||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHH
Confidence 1356999999963 445679999999875422 2334445567889999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999987799999999995 678899999999999999999998653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=363.20 Aligned_cols=226 Identities=28% Similarity=0.388 Sum_probs=195.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-C-CCCceeEEEECCEecC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-S-NAFLSGTILLNGHKTK----- 124 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~-~-~~~~~G~I~~~G~~~~----- 124 (497)
|+++||++.|...++ ...+++||||++++||++||+|+|||||||+.++|+|+++ + ....+|+|.|+|+++.
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 689999999975432 4679999999999999999999999999999999999997 4 3446799999998631
Q ss_pred ----CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.+.+.|+||||++ .|.|.+||.+.+.-....+. .. .+++..+++.++|+.+||.+... +.+.||++|||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSG 156 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCC
Confidence 2346799999996 68899999999888766532 22 35566788999999999976421 23459999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||.||.||+.+|+|||.||||++||...+.+|+++|+++.+ .|.++|++|||+ .-+.++||||+||+.|++|+.
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEe
Confidence 999999999999999999999999999999999999999999987 599999999995 689999999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|++++++
T Consensus 236 g~~~~i~ 242 (316)
T COG0444 236 GPVEEIF 242 (316)
T ss_pred CCHHHHh
Confidence 9998865
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=352.43 Aligned_cols=205 Identities=29% Similarity=0.404 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 78999999983 2357999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||.||+.+..... .......++++.++++.++|.+..++.+ ..|||||||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 146 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRV 146 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1346999999999999999999999875432 1233344567889999999987666644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999977799999999996 67888999999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=351.85 Aligned_cols=205 Identities=29% Similarity=0.472 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHh
Confidence 4689999998 2467999999999999999999999999999999999999885 9999999986531 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+....+ .. ..++++++++.++|.+..++.+ ..|||||||||+||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~a 140 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALA 140 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 11 1345788999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987889999999996 5788899999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=359.59 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=184.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++|+++.|. ++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcEE
Confidence 78999999983 367999999999999999999999999999999999999885 8999999987643334689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|++.+++.+||.||+.+..... .....+..+++.++++.+||.+..++. +..|||||||||+||++|+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 9999999999899999998865432 223344456788999999998766664 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee--CCeEEEEeCch
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (497)
+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999865 589999999996 67889999999998 59999887653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=354.49 Aligned_cols=214 Identities=33% Similarity=0.516 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhh
Confidence 67899999983 467999999999999999999999999999999999999886 8999999987532 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ ........+.+.++++.+||.+..++.+ ..||||||||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIAR 145 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999888999999998875432 2233344566888999999987777654 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++. .||++++|++|++++.|+++++.
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999985 589999999996 4565 59999999999999999877654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=361.95 Aligned_cols=222 Identities=24% Similarity=0.341 Sum_probs=200.0
Q ss_pred EEEEEeEEEEEEccC-------------------CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 010936 51 RLTWKDLTVMVTLSN-------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~ 111 (497)
.|+++|+++-+.... .+....++|+||+++.||++.|||-||||||||+++|.+++.|+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept-- 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT-- 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC--
Confidence 478888888775320 12234689999999999999999999999999999999999996
Q ss_pred ceeEEEECCEecC---------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 010936 112 LSGTILLNGHKTK---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182 (497)
Q Consensus 112 ~~G~I~~~G~~~~---------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 182 (497)
+|+|+++|.++. .+++++++|||+..|+|+.||.||..|+...+ +.++++.++++.++|+.+||...
T Consensus 82 -~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 82 -RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred -CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 999999998742 23567999999999999999999999998876 67889999999999999999998
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhc
Q 010936 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFEL 261 (497)
Q Consensus 183 ~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~ 261 (497)
.+. +|++|||||||||.|||||+.+|+|||||||+|+|||--+.++.+.|.+|.++ ++|||++|||. +|++++
T Consensus 158 ~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 158 ADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 877 66789999999999999999999999999999999999999999999999775 89999999995 799999
Q ss_pred CCeEEEeeCCeEEEEeCchhHHH
Q 010936 262 FDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 262 ~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.|||.+|++|+++..|+++|++.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=351.56 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 l~~~~l~~~~~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYP----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 46889999983 2257999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ .+||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 145 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRV 145 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987766644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ ..+.++||++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999977799999999996 678889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=357.32 Aligned_cols=217 Identities=24% Similarity=0.446 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 488999999983 467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++.+||.||+.+...... .....+.+.+++++++.+|+.+..++. ++.|||||||||+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHH
Confidence 13469999999999999999999988643321 122334456788999999998766654 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999987799999999996 6788999999999999999999887653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=352.48 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.++++|+++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHH
Confidence 489999999984210 1156999999999999999999999999999999999999885 99999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 -----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||.+..++. +.+|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~q 152 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQ 152 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 146999999999999999999999875432 223344456788999999998776664 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999999976 589999999996 45555 689999999999988764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=356.40 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----- 124 (497)
|.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 1 MSIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CEEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccc
Confidence 3589999999993 467999999999999999999999999999999999999885 899999998641
Q ss_pred ------CCcCcEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..++.++|++|++.+++.+||.||+.+.. ... .....+....+.++++.+||.+..++.+ ..|||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 144 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSG 144 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 01246899999999999999999997532 221 1223344567889999999987777644 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ .++.++||++++|++|++++.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999996 5778899999999999999999
Q ss_pred Cchh
Q 010936 278 ETSA 281 (497)
Q Consensus 278 ~~~~ 281 (497)
++++
T Consensus 224 ~~~~ 227 (242)
T PRK11124 224 DASC 227 (242)
T ss_pred CHHH
Confidence 8765
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=350.47 Aligned_cols=207 Identities=33% Similarity=0.502 Sum_probs=179.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.|. .+.+|+|+||++++| +++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHH
Confidence 46899999982 357999999999999 99999999999999999999999886 9999999986432 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||.||+.+..... .....+..+.++++++.+||.+..++.+ ..|||||||||+|||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 143 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQ 143 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875443 1223344567889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999976 59999999996 5788899999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=364.73 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|..+....+.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 57899999999421001256999999999999999999999999999999999999986 9999999987521
Q ss_pred ----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 010936 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++ .++ .+||.||+.++.... .....+..+++.++++.+||. +..++.+ +.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgG 149 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGG 149 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHH
Confidence 124699999997 345 579999998865432 233445566789999999996 5666644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|+
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999977799999999995 67889999999999999999999
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 88764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=407.85 Aligned_cols=254 Identities=28% Similarity=0.364 Sum_probs=205.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++..|.+|+.++++.+|+.+.-. .+ ....+..-.++++|+++.|.. .+..+|+|+|++|++
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~----~~------------~~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~ 498 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDK----TL------------IHLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPP 498 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccc----cc------------ccccccCceEEEEEEEEEeCC---CCcchhhceeEEeCC
Confidence 56789999999999888754200 00 011122335999999999953 234799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+|+|+|+++|. +|+|++||.+... .++.+|||+|++.+|.. |++||+.++....
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~ 574 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEA 574 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCC
Confidence 9999999999999999999999999996 9999999998532 25789999999999988 9999999875322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
..+.+-.+...+.+++.+. .++..++|.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|.+.
T Consensus 575 ~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~ 651 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651 (709)
T ss_pred CHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH
Confidence 1011111112222333443 567788999997 7788999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 237 L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|.++.. |+|+|+++|+++ ..+.||+|++|++|+++.+|+.+++..
T Consensus 652 L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 652 LLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 999855 799999999964 688999999999999999999998765
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=363.05 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 58999999999421 1246999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++ .+++.+||+||+.|+.... ..+.++..+++.++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~ 150 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVA 150 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 4677789999999875432 2345555677899999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++ ..||++++|++|+++..|+++++.
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999875 99999999996 456 589999999999999999988765
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=377.92 Aligned_cols=202 Identities=26% Similarity=0.379 Sum_probs=179.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------CcCcEEEEcCCCCCC
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDDNLI 140 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~ 140 (497)
.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|+++|.++.. .++.++|++|++.++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 4899999999999999999999999999999999999986 8999999987532 124699999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
+.+||+||+.+....+ ..+..+..+++.++++.+||.+..++. +++|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 233445556788999999998777664 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+|||+.++..+.+.|+++.+ .|+|||++||++ +++.++||++++|++|+++..|+++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999976 589999999995 6888999999999999999999987764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=363.53 Aligned_cols=214 Identities=23% Similarity=0.364 Sum_probs=185.4
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------
Q 010936 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------- 125 (497)
.++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 26 ~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKT-----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhc-----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhh
Confidence 456777777 4567999999999999999999999999999999999999886 8999999987431
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+..++.+ .+|||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv 169 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRV 169 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHH
Confidence 1246999999999999999999999875432 1223344567888999999987777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999764 89999999995 578899999999999999999988765
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=350.64 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|+ ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHH
Confidence 78999999983 2357999999999999999999999999999999999999885 9999999987531
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+..... .....+....+.++++.++|.+..++. +..|||||||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 146 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRV 146 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHH
Confidence 1346899999999888899999999875432 223344455678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++ +++..+||++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999977789999999996 6788899999999999975
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=357.29 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccc
Confidence 389999999993 467999999999999999999999999999999999999885 8999999986421
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcc
Q 010936 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWH 191 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~ 191 (497)
..+.++|++|++.+++.+||+||+.++..... .....+.+.++.++++.+||.+.. ++ +
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 149 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----Y 149 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----C
Confidence 12469999999999999999999987542111 123344556788999999997653 44 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 467999999999999999999999999999999999999999999999987799999999996 6788899999999999
Q ss_pred eEEEEeCchhH
Q 010936 272 KTVYFGETSAA 282 (497)
Q Consensus 272 ~iv~~G~~~~~ 282 (497)
++++.|+++++
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999988765
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=368.17 Aligned_cols=228 Identities=27% Similarity=0.358 Sum_probs=193.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++|....+|+|.++|.++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3699999999995321 23569999999999999999999999999999999999998742348999999997531
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
+.+.++||+|++ .++|.+|+.+++........ .....+..+++.++++.+||.+..+. + +.++++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124799999998 68899999999987654321 23455556778899999999753322 2 2477899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+ ..+.++||+|++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999996 5788899999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 998875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=354.76 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=184.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~---- 125 (497)
++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68999999983 356999999999999999999999999999999999999862 1127999999987531
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++ +||+||+.+....+. ..+..+..+.+.++++.+||. +..++ .+..||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHH
Confidence 1356999999999988 899999998754321 123344556788999999997 44454 45679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++ +|||++||++ .++.++||++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999774 8999999996 57889999999999999999998
Q ss_pred chhH
Q 010936 279 TSAA 282 (497)
Q Consensus 279 ~~~~ 282 (497)
++++
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 8765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=354.43 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHH
Confidence 589999999983 467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||.||+.++.... ........+.++++.+ ++.+..++. +..|||||||||
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQML 146 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHH
Confidence 1346999999999999999999998864321 1122334566777777 476555553 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999996 6789999999999999999999987763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=368.11 Aligned_cols=222 Identities=24% Similarity=0.307 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEEccCC-----cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC
Q 010936 51 RLTWKDLTVMVTLSNG-----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 125 (497)
.|+++||++.|..+.+ ....+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 5899999999953211 1257999999999999999999999999999999999999885 8999999987521
Q ss_pred --------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 010936 126 --------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRG 194 (497)
Q Consensus 126 --------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 194 (497)
.++.++||+|++ .+.|.+||.+++........ .....+.++++.++++.+||.+ ..++ ++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCcc
Confidence 135699999997 58899999999987654321 2344556678899999999963 4454 5678
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||||||||+|||||+.+|++||+||||++||+.++.+++++|+++.++ |.|+|++|||+ ..+.++||+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 99999999995 678889999999999999
Q ss_pred EEEeCchhHH
Q 010936 274 VYFGETSAAF 283 (497)
Q Consensus 274 v~~G~~~~~~ 283 (497)
++.|+.+++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=358.73 Aligned_cols=207 Identities=27% Similarity=0.359 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+.....+.+
T Consensus 12 ~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDT 83 (257)
T ss_pred cEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCce
Confidence 48999999999 3467999999999999999999999999999999999999885 899999998754334679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||+||+.+... . ....++.++++.+||.+..++. +..|||||||||+|||+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999987531 0 1235678899999998776664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||++ .++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999999996 5788999999999999999887653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=353.83 Aligned_cols=217 Identities=24% Similarity=0.392 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. .+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHH
Confidence 378999999983 357999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--D---KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++.+||+||+.+....... . .........+++++++.+|+.+..++.+ +.|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge 148 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQ 148 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 124599999999999999999999986432100 0 0112334567889999999987777654 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
+|||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||++ +++.++||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCH
Confidence 9999999999999999999999999999999999999999976 68999999995 678899999999999999999987
Q ss_pred hhH
Q 010936 280 SAA 282 (497)
Q Consensus 280 ~~~ 282 (497)
+++
T Consensus 227 ~~~ 229 (242)
T TIGR03411 227 DQV 229 (242)
T ss_pred HHH
Confidence 764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=355.93 Aligned_cols=215 Identities=30% Similarity=0.380 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 46899999993 467999999999999999999999999999999999999885 9999999986521
Q ss_pred ------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 010936 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (497)
Q Consensus 126 ------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (497)
..+.++|++|++.+++.+||.||+.++.... ...........+.++++.+|+.+..++. +.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 145 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PA 145 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hh
Confidence 1346999999999999999999998864221 1223344456788999999998766654 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++..+||++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 89999999996 67889999999999999
Q ss_pred EEEEeCchhH
Q 010936 273 TVYFGETSAA 282 (497)
Q Consensus 273 iv~~G~~~~~ 282 (497)
+++.|+.+++
T Consensus 225 i~~~g~~~~~ 234 (252)
T TIGR03005 225 IVEQGKPDEI 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9999987765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=348.95 Aligned_cols=201 Identities=30% Similarity=0.417 Sum_probs=172.8
Q ss_pred EEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 010936 53 TWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (497)
+++|+++.|. . +.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.
T Consensus 1 ~~~~l~~~~~-----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeC-----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 3678999883 3 67999999999999999999999999999999999999886 9999999987531 2356
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 130 AAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 130 i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
++|++|++. .+..+||+||+.+..... . . ...++.++++.+||.+..++.+ .+||||||||++||||
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 140 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAA 140 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHH
Confidence 999999974 334579999998865322 1 1 1246788999999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999987799999999996 5788899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=356.26 Aligned_cols=218 Identities=23% Similarity=0.330 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +++++|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999885 9999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccc
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP----------DKM--PWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (497)
....++|++|++.+++.+||+||+.++...... ... ...+....+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 123589999999999999999999986431100 000 11123356788899999987776654
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999995 6788999999999999
Q ss_pred eEEEEeCchhH
Q 010936 272 KTVYFGETSAA 282 (497)
Q Consensus 272 ~iv~~G~~~~~ 282 (497)
++++.|+++++
T Consensus 231 ~i~~~~~~~~~ 241 (255)
T PRK11300 231 TPLANGTPEEI 241 (255)
T ss_pred eEEecCCHHHH
Confidence 99999988765
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=361.06 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchH
Confidence 589999999993 2356999999999999999999999999999999999999885 9999999987521
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++|++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 149 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 149 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHH
Confidence 1256999999973 234579999999865432 2344455567899999999987777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|++++.|++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 67888999999999999999999987
Q ss_pred HHH
Q 010936 282 AFE 284 (497)
Q Consensus 282 ~~~ 284 (497)
+..
T Consensus 229 ~~~ 231 (283)
T PRK13636 229 VFA 231 (283)
T ss_pred Hhc
Confidence 653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=343.94 Aligned_cols=216 Identities=27% Similarity=0.417 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||+..| +..++|++|||++++||+++|+|+|||||||||++|+|+.++. +|+|.++|+++..
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHH
Confidence 58999999999 5688999999999999999999999999999999999999985 8999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.+..++||||...+||.|||+|||..++..+.. +.......+++.+.|- |.+..+++-| .|||||+|.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQML 145 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQML 145 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHH
Confidence 135699999999999999999999998655321 1111122666666663 5666666655 6999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++.++. ..+.+++||.++|.+|++++.|+.+++
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 88999999885 689999999999999999999999887
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 225 ~~ 226 (237)
T COG0410 225 LA 226 (237)
T ss_pred hc
Confidence 53
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=381.48 Aligned_cols=248 Identities=30% Similarity=0.377 Sum_probs=205.4
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
|++.||++.+..++++++.... + .+.....+.+++.++.+|+++.|+. ++++++|+|++++
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~-------------~--~~~~~~~~~~~~ei~~~~l~~~y~~----g~~~l~~l~~t~~ 345 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPG-------------S--GEKAEVANEPPIEISLENLSFRYPD----GKPALSDLNLTIK 345 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCC-------------C--ccccccccCCCceeeecceEEecCC----CCcccCCceeEec
Confidence 5678999999999986655321 0 0001122345667888899999963 3489999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+|+.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+... .+++++||+|++.+|+. |++||+.++..-
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~ 421 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD 421 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc
Confidence 99999999999999999999999999986 9999999987532 24789999999999998 999999987431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 156 RLPDKMPWSEKRTLVERTIIEMGL------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.++ +.+.++++..|| ++..|+.+|+ ..++|||||+|||++||||+++++++|+||||++||.++
T Consensus 422 -----~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 422 -----ASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred -----CCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 222 335556666555 3467889987 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..|.+.|.+++++ +|||++||++ ....-+|+|++|++|++++.|..+++.+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999875 9999999996 3567799999999999999999988743
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=359.43 Aligned_cols=221 Identities=24% Similarity=0.342 Sum_probs=185.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
|.|+++|+++.|..+....+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKN 77 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 358899999998421101146999999999999999999999999999999999999885 8999999987531
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++ .+++ .||+||+.+..... .....+..+.++++++.+||.+ ..++. +..|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSg 148 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSG 148 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCH
Confidence 124699999996 4555 69999999875432 2233444566888999999963 45554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987789999999996 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 228 ~~~~~~ 233 (280)
T PRK13649 228 KPKDIF 233 (280)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=400.42 Aligned_cols=245 Identities=25% Similarity=0.376 Sum_probs=196.0
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++|+.++++.++.... .+ . . .........++++|+++.+. +++++|+|+||++++
T Consensus 316 ~~~~~~~ri~~~l~~~~~~~~--~~-------~----~---~~~~~~~~~i~~~~vsf~~~----~~~~vL~~i~l~i~~ 375 (588)
T PRK11174 316 QAVGAAESLVTFLETPLAHPQ--QG-------E----K---ELASNDPVTIEAEDLEILSP----DGKTLAGPLNFTLPA 375 (588)
T ss_pred HHHHHHHHHHHHHcCCCcccC--CC-------c----c---ccCCCCCceEEEEeeEEecc----CCCeeeeeeEEEEcC
Confidence 578899999999976543110 00 0 0 00001122599999997663 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|+|++ |. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-- 448 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-- 448 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC--
Confidence 9999999999999999999999999 75 8999999998542 24679999999999987 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.++ +.++++..+ |++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 449 ---~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 449 ---DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred ---CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 123322 333333333 45577999987 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+.+++..
T Consensus 521 e~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 521 EQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999885 4799999999973 567799999999999999999887753
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=349.83 Aligned_cols=220 Identities=46% Similarity=0.707 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (497)
+.|+|+++.++..+ ..+++|+|+||++++||+++|+||||||||||+++|+|+++++...+|+|.++|.+... .++.
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 67999999995321 13689999999999999999999999999999999999998211138999999987532 2457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
++|++|++.+++.+||+||+.++.....+..........++++ .++.+++.+..++.+ +.|||||+|||+|||+
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 157 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQ 157 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHH
Confidence 9999999999999999999998765432211122222334555 888899877666644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|++||++..++.++||++++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998778999999999645789999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=348.33 Aligned_cols=206 Identities=31% Similarity=0.431 Sum_probs=178.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHH
Confidence 46889999983 367999999999999999999999999999999999999885 8999999987521
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.++..... .....+..+++.++++.+|+.+..++.+ .+||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVA 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHH
Confidence 13569999999999999999999998643211 2233444567888999999987766644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999999996 678899999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=352.77 Aligned_cols=218 Identities=28% Similarity=0.381 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~---- 125 (497)
|+++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+. +|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 46899999993 467999999999999999999999999999999999995 454 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
....++|++|++.+++.+|+.|++.+....... . .....+..+++.++++.+||.+ ..++.++ .+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 148 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGG 148 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHH
Confidence 123489999999999999999999886543210 0 0122333467888999999973 4555432 249999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (497)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +.+..+ ||++++|++|++++.|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999987789999999996 577777 8999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 88754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=358.10 Aligned_cols=225 Identities=30% Similarity=0.386 Sum_probs=189.0
Q ss_pred cCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 44 FSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 44 ~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
+++.....|+++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.
T Consensus 4 ~~~~~~~~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~ 75 (265)
T PRK10575 4 YTNHSDTTFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPL 75 (265)
T ss_pred ccCCCCceEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEeh
Confidence 3334445699999999993 467999999999999999999999999999999999999885 89999999874
Q ss_pred CC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 124 KL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 124 ~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.. ..+.++|++|++.+++.+||.||+.+....... .........+++.++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 21 134699999998888899999999876321100 00111233456888999999987667654 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|+++..
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999875 89999999996 678899999999999999999
Q ss_pred eCchhH
Q 010936 277 GETSAA 282 (497)
Q Consensus 277 G~~~~~ 282 (497)
|+.+++
T Consensus 230 ~~~~~~ 235 (265)
T PRK10575 230 GTPAEL 235 (265)
T ss_pred cCHHHh
Confidence 987765
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=347.99 Aligned_cols=209 Identities=26% Similarity=0.383 Sum_probs=177.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|..+. ..+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHH
Confidence 67899999984211 1256999999999999999999999999999999999999885 9999999987531
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ ..||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 0146999999999999999999999865432 1223334456788999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++ ..+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999864 89999999996 455 458999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=366.76 Aligned_cols=227 Identities=23% Similarity=0.284 Sum_probs=189.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~---- 125 (497)
.|+++||++.|..+. +...+|+||||+|++||++||+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 12569999999999999999999999999999999999987421 258999999997531
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
+.+.++||+|++ .++|.+||.+++........ .....+.++++.++++.+||.+..+. -+.++++||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgG 157 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGG 157 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHH
Confidence 123699999998 57899999998877654321 23445566788999999999752111 12367789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||+ ..+.++||+|++|++|++++.|
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999987 499999999996 5788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 988765
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=355.65 Aligned_cols=216 Identities=32% Similarity=0.443 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 488999999993 467999999999999999999999999999999999999885 8999999986431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++|++.+++.+||+||+.+..... ........+.+.++++.+||.+..++.+ ..|||||||||+|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 1246899999998888899999999864321 1122233456788999999987777654 5799999999999
Q ss_pred HHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 206 ALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 206 A~aL~------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+||+ .+|++|||||||+|||+.++..+.+.|++++ ++|.|||++||++ .++..+||++++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 5999999999999999999999999999998 5689999999996 67888999999999999999998
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 77653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=356.46 Aligned_cols=218 Identities=28% Similarity=0.405 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +++.+|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+||.||+.++...... ...........+.++++.+||.+..++. +..|||||+|||+
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHH
Confidence 134699999999888889999999886321100 0111123345678899999998777764 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+.+++
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999987789999999996 678899999999999999999987765
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=347.46 Aligned_cols=204 Identities=31% Similarity=0.454 Sum_probs=173.4
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcC
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (497)
++|+++.|.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 2 ~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHh
Confidence 6788988831 1257999999999999999999999999999999999999885 8999999987532 135
Q ss_pred cEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
.++|++|++. .++.+||+||+.+..... ..........+.++++.+||.+..++.+ ..|||||||||+|||
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~lar 147 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAG 147 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHH
Confidence 6899999975 366789999998865432 1223344556888999999987666644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987799999999996 67888999999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=359.91 Aligned_cols=215 Identities=30% Similarity=0.417 Sum_probs=184.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|. ++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHH
Confidence 78999999983 467999999999999999999999999999999999999886 9999999987521
Q ss_pred -CcCcEEEEcCCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNL-IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+ +...|+.||+.+..... .....+..+.+.++++.+||.+..++.+ ..||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 145 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRV 145 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHH
Confidence 12469999999753 34458999998865432 2233444566888999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987789999999996 6788999999999999999999987754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=355.27 Aligned_cols=217 Identities=22% Similarity=0.358 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 359999999988 24679999999999999999999999999999999999987510 148999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LS 196 (497)
..+.++|++|++.+++ +||+||+.+..... ..+..+..+.+.++++.+++. +..++ .+..||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 156 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKS-----PALSLS 156 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCC
Confidence 1346999999998888 89999999875432 223344455688899999984 23344 446799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |.|||++||++ .++.++||++++|++|++++.
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 79999999995 678899999999999999999
Q ss_pred eCchhH
Q 010936 277 GETSAA 282 (497)
Q Consensus 277 G~~~~~ 282 (497)
|+++++
T Consensus 235 ~~~~~~ 240 (258)
T PRK14268 235 GQTRQI 240 (258)
T ss_pred CCHHHH
Confidence 988765
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=349.69 Aligned_cols=209 Identities=33% Similarity=0.461 Sum_probs=174.3
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEE
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv 133 (497)
++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEEe
Confidence 578888882 357999999999999999999999999999999999999886 899999998653334579999
Q ss_pred cCCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 134 TQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 134 ~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++.++ +.+||+||+.+....... .........++++++++.++|.+..++.+ ..|||||||||+||+||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 9998763 347999999886432110 00112234456888999999987666644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987889999999996 6788999999999876 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=356.45 Aligned_cols=221 Identities=29% Similarity=0.423 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+...+|+|+++|.+...
T Consensus 4 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 58999999998 34679999999999999999999999999999999999998753346999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
..+.++|++|++.+++.+||.||+.+......+. .....+.+.++.++++.+||.+..++.+ ..|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 153 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STL 153 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----ccc
Confidence 1246899999999999999999998764211000 0112234467889999999987777654 479
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVF 232 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 489999999996 5788999999999999999
Q ss_pred EEeCchhH
Q 010936 275 YFGETSAA 282 (497)
Q Consensus 275 ~~G~~~~~ 282 (497)
+.|+++++
T Consensus 233 ~~g~~~~~ 240 (262)
T PRK09984 233 YDGSSQQF 240 (262)
T ss_pred EeCCHHHh
Confidence 99987653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=359.82 Aligned_cols=215 Identities=27% Similarity=0.374 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. +.+.+|+||||+|++||+++|+|||||||||||++|+|+++|. +|+|+++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHH
Confidence 78999999983 2356999999999999999999999999999999999999885 8999999987531
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .+..+||.||+.+..... ..+..+..+.+.++++.+||.+..++.+ ..|||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHH
Confidence 1246999999975 356689999998875432 2344455567889999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ .++ ..||++++|++|++++.|+++++.
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999987799999999996 566 579999999999999999988764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=352.80 Aligned_cols=224 Identities=28% Similarity=0.356 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecC--C-
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--L- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~--~- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|+++. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999993 357999999999999999999999999999999999998762 124899999998753 1
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++.+||.||+.++...+. ...+..+....+.++++.+|+........ +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHH
Confidence 12469999999999999999999998754321 01123344456788999999853211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++..+||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 69999999996 57889999999999999999999876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 53
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=351.30 Aligned_cols=224 Identities=28% Similarity=0.374 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 488999999983 457999999999999999999999999999999999998741 1248999999987531
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||.||+.++...... .....+..+.+.++++.+||.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHH
Confidence 135699999999888899999999987543210 1123344567889999999864211111 224568999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|++||++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999865 79999999996 5788899999999999999999987653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=347.61 Aligned_cols=214 Identities=30% Similarity=0.413 Sum_probs=176.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|.... ....+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhH
Confidence 68899999984210 0126999999999999999999999999999999999999885 8999999987531
Q ss_pred --CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 010936 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTL-VERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 --~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++ .+++.+||+||+.+....... ......... +.++++.+++. +..++. +..|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 150 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQ 150 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHH
Confidence 134699999998 467789999999886543211 111122222 35788999995 455554 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++..+||++++|++|+++..|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999996 5788899999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=350.18 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=180.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|. .+++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHH
Confidence 46899999983 467999999999999999999999999999999999999885 8999999987531
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|+.||+.++.... ... ..+.++++++.++ +.+..++. +..||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 141 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLA 141 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHH
Confidence 1246999999999999999999999875432 111 1233566777776 55555554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||++|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++..+||++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999999874 89999999996 678889999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=351.75 Aligned_cols=221 Identities=26% Similarity=0.339 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 6 KMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 489999999993 3579999999999999999999999999999999999864 211248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ .||+||+.++...+. ........+++.++++.+|+.+...+.. +..+..|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 156 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQ 156 (253)
T ss_pred CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 1356999999998888 499999998754321 1122334566888899999854222211 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999996 67889999999999999999998776
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 235 ~ 235 (253)
T PRK14242 235 I 235 (253)
T ss_pred H
Confidence 5
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=356.30 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999999931 2356999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++ .+++.+||.||+.++.... ..+..+..+++.++++.+||.+..++.+ ..|||||||||+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 3666789999999875432 2334455667899999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++ .++. .||++++|++|++++.|+++++.
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 4565 69999999999999999988765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=357.39 Aligned_cols=217 Identities=30% Similarity=0.427 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. +.+.+|+||||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 488999999993 2346999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .+...||.||+.+..... ........++++++++.+||.+..++.+ +.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHH
Confidence 1246899999974 334579999998765432 2334445567889999999987777754 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 6788999999999999999999998875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=354.94 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHH
Confidence 78999999983 2356999999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++. .+..+||.||+.+..... .....+..+++.++++.+||.+..++.+ .+|||||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHH
Confidence 1356999999963 333469999998764321 2234445567889999999988777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999995 6788899999999999999999988864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-44 Score=352.10 Aligned_cols=218 Identities=24% Similarity=0.332 Sum_probs=183.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|+++|+++..
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 699999999993 3579999999999999999999999999999999999988621 138999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++ +||+||+.++..... ........+.+.++++.+++. +..++ .++.|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSg 153 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSG 153 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCH
Confidence 1356999999988885 899999998754321 112333456688889998874 33444 4568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ .++.++||++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999996 5788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 987753
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=345.57 Aligned_cols=208 Identities=29% Similarity=0.451 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~~i 130 (497)
++++|+++.+. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccE
Confidence 46899999883 467999999999999999999999999999999999999885 99999999875321 2469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+|++||+.+..... ... ...+.++++.+||.+..++.+ ..|||||+||++|||||+
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999899999998875432 111 235778899999987777644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999987789999999996 5788999999999999999998865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=354.63 Aligned_cols=222 Identities=26% Similarity=0.335 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 010936 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~- 125 (497)
.|+++||++.|.... .+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 478999999994210 01367999999999999999999999999999999999999885 9999999987531
Q ss_pred -------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (497)
..+.++|++|++ .+++.+||+||+.+...... .........++.++++.+||. +..++. +.+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhC
Confidence 124699999996 46778999999987643211 122334456788999999996 555654 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+..+||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999875 89999999996 6788899999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999987753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=370.07 Aligned_cols=205 Identities=27% Similarity=0.387 Sum_probs=181.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe----cCC---------CcCcEEEE
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKL---------SFGTAAYV 133 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~----~~~---------~~~~i~yv 133 (497)
+...+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|+++|++ ... +.+.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467899999999999999999999999999999999999986 8999999962 210 12469999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 134 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
+|++.++|.+||+||+.++.... ..++.+.+.++.++++.+||.+..++.+ .+|||||||||+|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999986543 2345556678899999999988777754 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+||||||||+|||+.++..+.+.|.++.++ |+|||++||++ +++.++||++++|++|+++..|+++++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 99999999995 6889999999999999999999998774
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=345.23 Aligned_cols=211 Identities=30% Similarity=0.363 Sum_probs=179.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|+++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHH
Confidence 589999999984210 0135999999999999999999999999999999999999886 89999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 -----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..++.+ ..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~q 153 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQ 153 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 246999999999999999999998865432 1233444567889999999987766644 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ ..+ ..||++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999764 89999999996 455 5699999999999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=352.81 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=185.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHH
Confidence 6789999998 3467999999999999999999999999999999999999885 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.+++.+..++.+ ..|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHV 148 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHH
Confidence 24689999998888889999999885321000 01112233456888999999987777654 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.+++
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999987789999999996 578899999999999999999987765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=394.62 Aligned_cols=246 Identities=30% Similarity=0.438 Sum_probs=202.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.+|...... .+ .......|+++|+++.|+ +++++|+|+||++++
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~----~~--------------~~~~~~~I~f~~vsf~y~----~~~~vl~~is~~i~~ 354 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPP----DP--------------LKDTIGSIEFENVSFSYP----GKKPVLKDISFSIEP 354 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCC----CC--------------CCCCCCeEEEEEEEEEcC----CCCccccCceEEEcC
Confidence 47889999999999877632200 00 111223499999999994 257899999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||+++|+|+++|. +|+|.+||.+++. .++.++||+|++.+|.. ||+||+.++..-
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999985 9999999998642 24679999999999995 999999998432
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
.+.++..+. +++.+.. +++..||.+|+ .+..||||||||++||||++++|++|+||||||+||+.+..
T Consensus 430 ----at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 430 ----ATDEEIEEALKLANAHEFIAN--LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred ----CCHHHHHHHHHHhChHHHHHh--CcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 223332222 3334443 46678999995 67789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+.+.++++. +|+|+|+++|++ +.+.. ||+|++|++|++++.|+.+++..
T Consensus 503 ~I~~~l~~l~-~~rT~iiIaHRl-sti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 503 LIQDALKKLL-KGRTTLIIAHRL-STIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEeccH-hHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999887 568999999997 44554 99999999999999999998764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=342.87 Aligned_cols=207 Identities=29% Similarity=0.417 Sum_probs=176.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+. .|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHc
Confidence 46899999883 232 3999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+...... .. ....++++.++++.+||.+..++.+ .+||||||||++||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~a 142 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARV 142 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 11 1233456889999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++..|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999764 89999999995 6788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=362.88 Aligned_cols=229 Identities=19% Similarity=0.231 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~---- 125 (497)
.|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 2357999999999999999999999999999999999998641 1348999999987521
Q ss_pred -----CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
..+.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+..+ +.+.++.+|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1246999999975 6788999999986432111000 111234567889999999975321 112366789
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
||||||||+||+||+.+|+||||||||+|||+.++.+++++|+++.++ |.|||++|||+ ..+.++||+|++|++|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 99999999995 6788999999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
+.|+.+++.
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999988764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=348.93 Aligned_cols=223 Identities=26% Similarity=0.362 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 578999999993 4679999999999999999999999999999999999975322248999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++ .||+||+.++...+.. ........+++.++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 1356999999998887 5999999987543210 0012334456788999999953221111 12456899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|+++||||||+|||+.++..+.+.|+++.+ |+|||++||++ +++.++||++++|++|++++.|+.+++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999865 89999999996 6788999999999999999999887653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=355.04 Aligned_cols=219 Identities=24% Similarity=0.376 Sum_probs=186.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...++++|+++.|.. +.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 5 ~~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 5 SVMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENL 78 (271)
T ss_pred ceEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCH
Confidence 346999999999831 2357999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++|++|++. .++.+||+||+.+..... .....+...++.++++.+||.+..++.+ ..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 150 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQR 150 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHH
Confidence 1356999999974 677789999999875432 2233444567889999999987777754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
++|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||++||++ .++ ..||++++|++|+++..|++++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999876 59999999997 455 4799999999999999998876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 229 ~~ 230 (271)
T PRK13632 229 IL 230 (271)
T ss_pred Hh
Confidence 54
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=348.85 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 489999999993 4579999999999999999999999999999999999986 321248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++.+||+||+.+..... ......+..+++.++++.+++.+....... ..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHH
Confidence 1356999999999999999999998765432 111233344567889999998642211111 245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++..|++++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 67889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 234 ~ 234 (252)
T PRK14256 234 I 234 (252)
T ss_pred H
Confidence 5
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=353.58 Aligned_cols=220 Identities=29% Similarity=0.394 Sum_probs=187.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|. .+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHH
Confidence 4699999999993 467999999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||+||+.+......+. ..........+.++++.+||.+..++. +..||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHHH
Confidence 1246999999999999899999998753111000 001123345678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999874 89999999996 678999999999999999999998775
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 232 ~ 232 (265)
T PRK10253 232 V 232 (265)
T ss_pred h
Confidence 4
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=350.97 Aligned_cols=224 Identities=25% Similarity=0.368 Sum_probs=184.5
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~- 125 (497)
...++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 11 ~~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 34689999999993 3579999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++.+++ +||+||+.+...... ..+..+..+++.++++.+++.+...... +..+.+|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq 161 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQ 161 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHH
Confidence 1356999999998887 799999998754321 1233444567889999999853211111 12456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++..+||++++|++|+++..|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999964 78999999996 578889999999999999999988
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 240 ~~~~ 243 (260)
T PRK10744 240 DTIF 243 (260)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=352.70 Aligned_cols=223 Identities=25% Similarity=0.348 Sum_probs=183.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..|+++||++.|. ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+.+|+|+++|+++..
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3699999999993 467999999999999999999999999999999999998741 1248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+..+++.++++.+||.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHH
Confidence 13468999999988885 999999987543210 0122334566788999999964211111 124568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ ..+..+||++++|++|+++..|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999965 68999999996 6788999999999999999999877
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 248 ~~ 249 (267)
T PRK14235 248 KM 249 (267)
T ss_pred HH
Confidence 65
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=345.24 Aligned_cols=214 Identities=29% Similarity=0.436 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.+. .+.+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999983 467999999999999999999999999999999999999986 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+||.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARA 144 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999999875543 1223344566888999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|+.+++
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999875 89999999996 678899999999999999999887654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=346.67 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=187.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+++|+|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999983 457999999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+....+ ........+.+.++++.+++.+..++.+ ..|||||+||++||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARA 144 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 1223334466789999999987777654 4799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999875 89999999996 6788999999999999999999887653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=351.63 Aligned_cols=217 Identities=23% Similarity=0.331 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 5899999999841 1246999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. +++..|+.+|+.+..... ........+.+.++++.+++.+..++. +..||||||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 152 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVA 152 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 677789999998875432 223444456788899999998777664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.. ||++++|++|++++.|+++++.
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999765 89999999996 46654 9999999999999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=347.67 Aligned_cols=222 Identities=24% Similarity=0.336 Sum_probs=182.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC---CCCCCceeEEEECCEecCC-
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~---~~~~~~~G~I~~~G~~~~~- 125 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|.+...
T Consensus 2 ~~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 368999999998 3467999999999999999999999999999999999973 331 138999999987531
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++ .||.||+.++...+. ........+.++++++.+||.+...+.. +..+..|||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~ 151 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQ 151 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHH
Confidence 1346999999998887 599999998754321 1112234456788999999864322211 12456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++ .++.++||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999995 479999999996 578899999999999999999998
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14245 230 KKIF 233 (250)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=348.28 Aligned_cols=210 Identities=29% Similarity=0.417 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHH
Confidence 58999999998 3457999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++ .||+||+.+..... . . ...++.++++.++|. +..++ .+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHH
Confidence 1356999999998887 59999998754321 1 1 134577899999996 44554 45679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999874 99999999996 678889999999999999999988765
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=349.72 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=183.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ....+|+|.++|++...
T Consensus 12 ~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 589999999983 45799999999999999999999999999999999999863 21248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+...... +..+.+|||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~q 162 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQ 162 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHH
Confidence 13469999999988886 99999988754321 1123344556788899999854211111 1245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 67889999999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 53
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=375.08 Aligned_cols=227 Identities=31% Similarity=0.406 Sum_probs=199.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK----- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~----- 124 (497)
.|+++||++.|... ++...+++||||++.+||++||+|.|||||||+.++|.|+++++ ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 69999999999754 23357999999999999999999999999999999999999876 456899999998631
Q ss_pred ----CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.+.+.|+|+||++ .+.|-+||.+-+.-....+. ..+.++.++++.++|+.+||++.... +.+|++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1236799999996 46777999999888766653 23477788899999999999876554 5699999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+ .-+.++||||++|++|++++.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999986 599999999996 6899999999999999999999
Q ss_pred CchhHHH
Q 010936 278 ETSAAFE 284 (497)
Q Consensus 278 ~~~~~~~ 284 (497)
++++++.
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9999874
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=355.57 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. ..+.+|+||||++++||+++|+||||||||||+++|+|+++|....+|+|.++|.+...
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999999842 12469999999999999999999999999999999999998852113999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. +++.+||.||+.|..... ..+.++..+++.++++.+||.+..++. ++.|||||+||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHH
Confidence 1246999999974 667789999998864332 234555567788999999998776664 4679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++ ..||++++|++|++++.|+++++.
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 455 579999999999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=340.35 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+++|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 46899999882 2468999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+...... . .....++++.++++.+||.+..++. +..||||||||++|||+
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARC 142 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 1 1122345678899999998776664 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||++ .++.++||++++|++|++++.|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999764 89999999995 57888999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=344.48 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++||++.|. .+ ..|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhc
Confidence 78999999993 22 23999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+...... .. ......++.++++.+||.+..++.+ ..||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 143 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARC 143 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987632110 11 1233566889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999764 89999999996 6788999999999999999999877654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=365.87 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=180.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|++ ||++.|. ++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~~-----~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLG-----DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeC-----CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 566 8898882 233 3 899999999999999999999999999999999886 8999999987421
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|+..++|.+||+||+.|+... ...++++++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qR 136 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQR 136 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 135799999999999999999999986421 1235688999999998777764 45799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++ +++..+||++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 68999999999999999999999988
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 216 i~ 217 (352)
T PRK11144 216 VW 217 (352)
T ss_pred HH
Confidence 74
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=346.98 Aligned_cols=222 Identities=28% Similarity=0.382 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999993 4579999999999999999999999999999999999853 421238999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +||+||+.+...... ..........+.++++.+++.+...+.. +..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 155 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQ 155 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHH
Confidence 1346999999998887 799999998754321 1112333456788899998753211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999865 68999999996 57889999999999999999999877
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 234 ~~ 235 (252)
T PRK14239 234 MF 235 (252)
T ss_pred HH
Confidence 53
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=355.44 Aligned_cols=220 Identities=21% Similarity=0.281 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++|+++.|..+......+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccccc
Confidence 48999999999421000135999999999999999999999999999999999999885 899999998642
Q ss_pred ----CCcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 125 ----LSFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
..++.++|++|++. +++ .||+||+.+..... .....+...++.++++.++|. +..++. +..|||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCH
Confidence 11346999999973 444 59999999875322 223344445678899999994 555654 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||++ +++.++||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999764 89999999996 578899999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9987764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=398.79 Aligned_cols=242 Identities=27% Similarity=0.357 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++.+|+.++++.+++.+. + ... ..+....++++|+++.|+. .++++|+|+||++++
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~---~------------~~~---~~~~~~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~ 478 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDE---A------------KTD---PGKLSGAIEVDRVTFRYRP---DGPLILDDVSLQIEP 478 (686)
T ss_pred HHHHHHHHHHHHhcCCccccc---C------------cCC---CCCCCceEEEEEEEEEcCC---CCccceeeeEEEECC
Confidence 577889999999976544211 0 000 0011225999999999952 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998642 24679999999999987 99999998632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. +.+.++++..|+ ++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 553 ----~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 553 ----LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 122 234555555554 3467899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++ ++|+|++||++ +..+.||+|++|++|++++.|+.+++.+
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 58999999996 3567799999999999999999888653
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=343.59 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.|. . ++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 46889999883 2 3899999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++.+ +.|||||+|||+||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 143 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARA 143 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHH
Confidence 7999999999999999999998875332 2233444556788999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++++|||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999765 99999999996 6788999999999999999999877653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=348.20 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|.. +.+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 488999999993 4579999999999999999999999999999999999987421 248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++.+||+||+.++...+. .......++.++++++.+||.+ ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 151 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSG 151 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCH
Confidence 13569999999999999999999998754321 1123344567888999999842 3333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee------CC
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GG 271 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~------~G 271 (497)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 68999999996 67889999999997 79
Q ss_pred eEEEEeCchhHH
Q 010936 272 KTVYFGETSAAF 283 (497)
Q Consensus 272 ~iv~~G~~~~~~ 283 (497)
++++.|+++++.
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999887753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=382.12 Aligned_cols=220 Identities=23% Similarity=0.324 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +.+|+|.++|.+...
T Consensus 5 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999861 138999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++||+|++.+++.+||+||+.++...+.....+..+..++++++++.+||.+..++.+ .+|||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~ 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVE 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHH
Confidence 12569999999999999999999998754321111223344567889999999987777755 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999987899999999995 678899999999999999999998765
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=346.74 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 3589999999983 467999999999999999999999999999999999998651 1148999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++ +|++||+.+...... .....+...++.++++.++|.+...... +..+..||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~ 153 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGGQQ 153 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHH
Confidence 1356999999998887 899999998754321 1123344556788999998853211111 124568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999876 58999999996 6788999999999999999999988
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 232 ~~~ 234 (251)
T PRK14270 232 KIF 234 (251)
T ss_pred HHh
Confidence 753
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=351.02 Aligned_cols=222 Identities=21% Similarity=0.331 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 010936 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~- 125 (497)
.|+++||++.|..+. .+.+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 489999999994211 01256999999999999999999999999999999999999886 9999999987532
Q ss_pred ----CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 010936 126 ----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (497)
..+.++|++|++. +++.+||.+++.+...... .....+..+.+.++++.+||. +..++. +..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHH
Confidence 1246999999975 6788899999988654321 123334456788999999994 455553 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999874 89999999996 6788899999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 877653
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=345.17 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999993 35799999999999999999999999999999999998763 11248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +||+||+.+...... ..+..+.++.+.++++.+++.+...... +..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 153 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQ 153 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHH
Confidence 1346999999998888 899999998754321 1123344566788888888753211111 1245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++ ..+.++||++++|++|+++..|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999995 67889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 232 ~ 232 (250)
T PRK14240 232 L 232 (250)
T ss_pred H
Confidence 5
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=380.80 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48999999999 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||+||+.++...... ...+..+.++++.++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 150 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMV 150 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHH
Confidence 124699999999999999999999987432210 11223444567889999999988777655 46999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++..+||+|++|++|+++..|+++++
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999999987799999999996 678899999999999999999988765
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=364.20 Aligned_cols=207 Identities=29% Similarity=0.432 Sum_probs=180.7
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C
Q 010936 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~ 126 (497)
||++.|. ++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... .
T Consensus 4 ~l~~~~~-----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLG-----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEEC-----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchh
Confidence 7888882 333 4 999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalA 143 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIG 143 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999875421 12334556889999999988777654 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 144 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 89999999996 6788999999999999999999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=345.28 Aligned_cols=222 Identities=22% Similarity=0.325 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 489999999983 467999999999999999999999999999999999998741 1148999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ +||+||+.+...... .......++.+.++++.+++.+..+.. .+..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHH
Confidence 1356999999998888 799999998754321 112233445678889999986422111 12355689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.++||++++|++|+++..|++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999865 78999999996 57889999999999999999998876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 54
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=348.08 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=185.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~- 125 (497)
...|+++|+++.| +.+++|+|+||++++||+++|+|||||||||||++|+|+++|. .+.+|+|.++|.+...
T Consensus 18 ~~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 4469999999999 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++ .||+||+.++.... ........+.++.++++.++|.+..+... +..+..|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHH
Confidence 1346999999998887 59999999875432 11123344566888999999864322222 23567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++ +++.++||++++|++|++++.|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999954 79999999996 578899999999999999999998
Q ss_pred hhH
Q 010936 280 SAA 282 (497)
Q Consensus 280 ~~~ 282 (497)
+++
T Consensus 247 ~~~ 249 (267)
T PRK14237 247 RNI 249 (267)
T ss_pred HHH
Confidence 775
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=344.71 Aligned_cols=200 Identities=33% Similarity=0.478 Sum_probs=172.3
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~ 151 (497)
|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 57999999999999999999999999999999999885 999999998764322235899999999999999999998
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
......+ .....+..+++.++++.+||.+..++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 2333444566889999999987777654 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 232 ~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
.+.+.|++++++ |+|||++||++ .++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999774 89999999996 67889999999999999998886543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=351.97 Aligned_cols=220 Identities=26% Similarity=0.395 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCC-cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNG-ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
.++++|+++.|..... ..+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccH
Confidence 5899999999942110 1356999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|++. .+...||.||+.|+.... ..+..+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHH
Confidence 1356999999974 233469999999875432 2334555677899999999988777754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.. ||++++|++|++++.|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 99999999996 45654 99999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 231 ~~ 232 (280)
T PRK13633 231 IF 232 (280)
T ss_pred Hh
Confidence 64
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=403.67 Aligned_cols=252 Identities=29% Similarity=0.435 Sum_probs=206.8
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
+.|++||.+|+++.+..|..+..... .+ ...+....++++|++++|+.+ ++..||+|+||.|+
T Consensus 315 ~~a~~aa~~I~~~i~~~~~i~~~~~~-----------~~----~~~~~~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~ 377 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPSIDPYSKG-----------GR----VLSSIKGEIEFRNVCFSYPSR--PDVKILKGVSLKIP 377 (1228)
T ss_pred hccccchHHHHHHhcCCCCCCccccc-----------CC----cccccccceEEEEEEecCCCC--CcchhhCCeEEEeC
Confidence 36889999999999998887542200 00 112234569999999999754 35689999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+|+.+||+|||||||||++++|.++++|. +|+|++||.+++. .+.++|.|.|+|.+|.. ||+||+.|+..-
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD 453 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc
Confidence 99999999999999999999999999996 9999999998542 24679999999988875 999999998432
Q ss_pred cCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 156 RLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 156 ~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
.+.++..+ .+.+.+ ..|++..+|.+|+..+ +||||||||++|||||+++|+|||||||||+||+.++
T Consensus 454 -----at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se 525 (1228)
T KOG0055|consen 454 -----ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525 (1228)
T ss_pred -----ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH
Confidence 22222222 223333 3567889999998444 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..+.+.|.+.. .|+|.|+++|++ +.+.+ +|+|++|++|++++.|+++|++.
T Consensus 526 ~~Vq~ALd~~~-~grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 526 RVVQEALDKAS-KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhh-cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 99999998875 489999999996 45655 99999999999999999999875
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=389.07 Aligned_cols=246 Identities=26% Similarity=0.358 Sum_probs=197.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+..+.+|+.++++.++.... . + .. ..+....++++|+++.|+. .++++|+|+|+++++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~-~-----~-------~~-----~~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 368 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDE-G-----K-------RV-----IERAKGDIEFRNVTFTYPG---KEVPALRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCC-C-----C-------cC-----CCCCCCeEEEEEEEEecCC---CCCccccCceEEeCC
Confidence 467788999998875433211 0 0 00 0111225999999999942 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 442 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC--
Confidence 9999999999999999999999999996 8999999998532 24679999999999986 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+..+. +.+.++++..| |++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 --~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 443 --EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred --CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 11222 23444455444 45667999987 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ ++|+|++||++ ...+.||+|++|++|++++.|+.+++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 516 ERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999998754 69999999996 3577899999999999999999887653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=346.49 Aligned_cols=216 Identities=27% Similarity=0.349 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-----~~~ 125 (497)
.|+++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+ +..
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccccc
Confidence 589999999983 357999999999999999999999999999999999999886 8999999986 421
Q ss_pred ---------CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 010936 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (497)
Q Consensus 126 ---------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (497)
..+.++|++|++. +++.+|+.||+.+...... .....+....+.++++.+++.+ ..++. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 150 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL-----PT 150 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC-----Cc
Confidence 1235999999973 6778899999976532211 1112234556788999999964 45553 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ ..+..+||++++|++|+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGR 229 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998775 89999999995 67888999999999999
Q ss_pred EEEEeCchhH
Q 010936 273 TVYFGETSAA 282 (497)
Q Consensus 273 iv~~G~~~~~ 282 (497)
+++.|+++++
T Consensus 230 i~~~~~~~~~ 239 (258)
T PRK11701 230 VVESGLTDQV 239 (258)
T ss_pred EEEeCCHHHH
Confidence 9999988765
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=343.59 Aligned_cols=220 Identities=26% Similarity=0.362 Sum_probs=183.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 3689999999983 4679999999999999999999999999999999999987631 137999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (497)
.++.++|++|++.+++.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCC
Confidence 13469999999999999999999987654321 1122333455677777777642 3344 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999865 69999999996 678889999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9987753
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=344.03 Aligned_cols=198 Identities=29% Similarity=0.429 Sum_probs=171.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEc-CCCCCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVT-QDDNLIGT 142 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~-Q~~~l~~~ 142 (497)
.+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 467999999999999999999999999999999999999886 8999999986421 235689998 55678888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
+||+||+.+..... .....+..+.+.++++.+||.+..++.+ ..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875542 2233444556788999999988877765 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999774 89999999996 5788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=349.28 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=181.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.| +.+.+|+|+||+|++||+++|+|||||||||||++|+|++++.. +.+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 469999999999 34679999999999999999999999999999999999986310 148999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++.++|++|++.+++. ||+||+.+.+..+ ... ...++.+.++++.+++........ +..+..||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~ 160 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQQ 160 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHHH
Confidence 12469999999988885 9999999876432 111 123455677888888743211111 224568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC----------
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG---------- 270 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~---------- 270 (497)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++..+||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccc
Confidence 999999999999999999999999999999999999999954 78999999996 688999999999996
Q ss_pred -CeEEEEeCchhHH
Q 010936 271 -GKTVYFGETSAAF 283 (497)
Q Consensus 271 -G~iv~~G~~~~~~ 283 (497)
|++++.|+++++.
T Consensus 239 ~g~~~~~~~~~~~~ 252 (269)
T PRK14259 239 VGYLVEFNETKKIF 252 (269)
T ss_pred cceEEEeCCHHHHH
Confidence 6789999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=385.33 Aligned_cols=241 Identities=21% Similarity=0.279 Sum_probs=198.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++++|+.++++.++.... . . +.. .....++++|+++.|+ .++++|+|+|+++++
T Consensus 310 ~~~~s~~ri~~~l~~~~~~~~---~--~---------~~~-----~~~~~i~~~~v~f~y~----~~~~il~~i~l~i~~ 366 (592)
T PRK10790 310 QAVVAGERVFELMDGPRQQYG---N--D---------DRP-----LQSGRIDIDNVSFAYR----DDNLVLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHhcCCCccCC---C--C---------ccC-----CCCCeEEEEEEEEEeC----CCCceeeceeEEEcC
Confidence 467899999999875433110 0 0 000 0112489999999995 235699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC--
Confidence 9999999999999999999999999996 8999999998542 24679999999999998 99999998731
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. +.+.++++.+|+ ++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 441 ----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 441 ----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 122 335666666664 4567898886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++.+ ++|+|++||++ .....||+|++|++|++++.|+.+++.
T Consensus 512 ~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 512 EQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999998865 69999999997 356779999999999999999998875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=346.64 Aligned_cols=223 Identities=25% Similarity=0.340 Sum_probs=181.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~-- 125 (497)
..++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|++...
T Consensus 20 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 4699999999993 4679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++. ||+||+.+...... .......+..+.+.++.+++.+...... +..+..||||||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~ 170 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSALSLSGGQQ 170 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCcccCCHHHH
Confidence 13469999999988885 99999998753221 1112233455777888888853211111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999965 68999999996 5788999999999999999999887
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 249 ~~~ 251 (268)
T PRK14248 249 QIF 251 (268)
T ss_pred HHH
Confidence 653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=344.44 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.-+++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 5 ~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 35789999988 34679999999999999999999999999999999999976 211248999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+....+ .........++.+.++++.+||.+...+.+. ..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHH
Confidence 13569999999988886 9999999874332 1111223344567889999999653222221 245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999854 89999999996 57889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 5
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=380.03 Aligned_cols=218 Identities=23% Similarity=0.358 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++||+|++.+++.+||+||+.++..... ... .+..+..+++.++++.+||.+..++.+ .+||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~ 151 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHK 151 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHH
Confidence 12469999999999999999999987642110 001 123344567889999999987777755 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999999988899999999995 6788999999999999999999987
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 65
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=384.77 Aligned_cols=246 Identities=28% Similarity=0.405 Sum_probs=201.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|.... +. .. . . ......++++|+++.|+. +++.+|+|+||++++
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~---~~-~~---------~---~-~~~~~~i~~~~v~f~y~~---~~~~il~~i~~~i~~ 365 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTF---PT-TS---------T---A-AADQVSLTLNNVSFTYPD---QPQPVLKGLSLQIKA 365 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCC---Cc-cc---------C---C-CCCCCeEEEEEEEEECCC---CCCcceecceEEECC
Confidence 578899999999987665321 00 00 0 0 011235999999999942 235699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|+|+++|. +|+|++||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 439 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-- 439 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--
Confidence 9999999999999999999999999986 9999999998542 24579999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
..+ ++.+.++++..++. +..||.+|+ ....||||||||++|||||+++|++|+|||||++||+.++
T Consensus 440 ---~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 440 ---NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred ---ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 112 23466677777764 456888986 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..+.+.|+++. +++|+|+++|+++ . ...||+|++|++|++++.|+.+++.+
T Consensus 512 ~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 512 RQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999985 4799999999974 4 45699999999999999999887653
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=337.17 Aligned_cols=200 Identities=30% Similarity=0.428 Sum_probs=172.9
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C
Q 010936 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~ 126 (497)
||+++|. ++.+ |+||++++ |+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 5 ~l~~~~~-----~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLP-----DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecC-----Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhH
Confidence 8899883 3444 99999999 999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..++. +..||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 143 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALA 143 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHH
Confidence 346999999999999999999998875321 1233445688899999998766654 457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|++++.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 89999999995 6788999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=334.43 Aligned_cols=195 Identities=36% Similarity=0.631 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.++|+|+++.|+.+. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 489999999997642 35689999999999999999999999999999999999998321249999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++.+||+||+.++.... .++ .+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHHHH
Confidence 356999999999999999999998763210 222 4457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+||+.+|++|||||||+|||+.++..+++.|++++++ +.|+|+++|+..+++.++||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999775 6777777766456788999999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=322.35 Aligned_cols=214 Identities=29% Similarity=0.429 Sum_probs=191.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
+...+++.+|+. ..+.+|+|||+++.+||.+.++||||||||||||+++|+.+|. .|+|.+||+++.-....-|
T Consensus 4 l~~~~~sl~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgaerg 77 (259)
T COG4525 4 LNVSHLSLSYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAERG 77 (259)
T ss_pred eehhheEEecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCccce
Confidence 556778888842 2255999999999999999999999999999999999999996 8999999998754434568
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
.|+|++.++|.+||.||+.|+..++ ++++.++.+++.+.+..+||++..++.+ .+|||||||||.|||||+.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhc
Confidence 9999999999999999999999886 6788899999999999999998877654 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee--CCeEEEEeCch
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (497)
+|++|+||||+++||.-++.++.++|-++++ .|+.++++||+. +|+.-+++++++|+ .|+++..-+++
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999999999999887 599999999995 68888999999998 68998877665
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=348.70 Aligned_cols=220 Identities=30% Similarity=0.377 Sum_probs=183.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-----CceeEEEECCEecCC-
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKL- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-----~~~G~I~~~G~~~~~- 125 (497)
|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7899999998 34679999999999999999999999999999999999998730 127999999987532
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++.+||+||+.+....... ......+..+.+.++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 151 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGEL 151 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 124589999998766668999999886321100 0111123345678899999998766654 457999999
Q ss_pred HHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 201 RRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 201 qRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|||+|||+|+ .+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++ +++.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999876 89999999996 678889999999999
Q ss_pred CeEEEEeCchhH
Q 010936 271 GKTVYFGETSAA 282 (497)
Q Consensus 271 G~iv~~G~~~~~ 282 (497)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999988765
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=327.94 Aligned_cols=218 Identities=30% Similarity=0.434 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
+|+.+||||++ ..+.+|++||++++|||+++|+||||||||||||.|+|-+.|+ +|++.+||.+....
T Consensus 1 mi~a~nls~~~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 1 MIRAENLSYSL-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred CeeeeeeEEEe-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHH
Confidence 37889999999 4688999999999999999999999999999999999999986 89999999975321
Q ss_pred -cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 -~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.-+.+||+..+-..+||+|.+.++..-... .....+..+.+++.|...++.+.+.+.+ ..|||||||||.+
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVql 146 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQL 146 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHH
Confidence 24568999998875456999999998643211 1122244556888999999988877644 4799999999999
Q ss_pred HHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 206 ALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 206 A~aL~~------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||.|+. ++++||||||||+||...+..++++.++++++|..|+++.||. +....+||||++|.+|+++..|++
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCH
Confidence 999985 4569999999999999999999999999999999999999996 678999999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
++++
T Consensus 226 ~~vl 229 (259)
T COG4559 226 QDVL 229 (259)
T ss_pred HHhc
Confidence 9876
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=344.89 Aligned_cols=222 Identities=27% Similarity=0.401 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC--ceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~--~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++... .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999982 45799999999999999999999999999999999999875311 38999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ +||+||+.++...+. ..+..+..+.+.++++.+++.+...... +.++..|||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 157 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKL-NKSALGLSGGQQQ 157 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1246999999999888 799999988754321 1223344456788899898843211111 2255689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee-----CCeEEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGKTVYF 276 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~-----~G~iv~~ 276 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999865 69999999996 68899999999998 5999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 236 ~~~~~~~ 242 (259)
T PRK14260 236 GVTTQIF 242 (259)
T ss_pred CCHHHHh
Confidence 9988753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=342.68 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 588999999983 467999999999999999999999999999999999998752 0248999999987521
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++|++|++.+++ .||.||+.+..... .........+++.+.++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qr 153 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQR 153 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHH
Confidence 1346999999999887 79999999875332 11122334456778888888754221111 12456899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999999996 678999999999999999999987664
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=342.46 Aligned_cols=221 Identities=26% Similarity=0.336 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 58999999998 3467999999999999999999999999999999999987531 1137999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++. ||+||+.+....+. .......+..+.++++.+++.+...+.. +..+..|||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQ 156 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHH
Confidence 13469999999998885 99999998755431 1122334456788888888853221111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999976 58999999995 67888999999999999999999876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 235 ~ 235 (253)
T PRK14261 235 I 235 (253)
T ss_pred H
Confidence 5
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=342.07 Aligned_cols=222 Identities=24% Similarity=0.356 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 488999999983 4679999999999999999999999999999999999998741 125999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+....+. ........+.++++++.++|.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHH
Confidence 13569999999998885 99999998754321 0112223455777888888754222211 2356689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++ .++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 589999999995 67889999999999999999998876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 233 ~~ 234 (251)
T PRK14249 233 IF 234 (251)
T ss_pred HH
Confidence 53
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=346.17 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=185.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 468999999999 3467999999999999999999999999999999999998751 1248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +||+||+.+..... ...+..+....+.++++.++|.+..++... ..+..|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 1356999999998888 79999999874322 112334444567788999998753322221 245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++..|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 48999999995 67889999999999999999999877
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 249 ~~ 250 (276)
T PRK14271 249 LF 250 (276)
T ss_pred HH
Confidence 63
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=369.93 Aligned_cols=225 Identities=28% Similarity=0.350 Sum_probs=194.4
Q ss_pred eeEEEEEeEEEEEEccC------CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 49 SARLTWKDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
...++++||++.|..++ .+...+++||||++++||++||+|+||||||||.++|+|+.+|. +|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc
Confidence 45689999999997532 23457899999999999999999999999999999999999995 9999999976
Q ss_pred cC-------CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 010936 123 TK-------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (497)
Q Consensus 123 ~~-------~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (497)
.. ..++++-+|+|++ .+.|.+||.+++......... ....+.++++.++++.+||... +.+.+|+
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 21 1134677888885 689999999999988776533 2255667789999999999842 3344889
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||. ..+..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCe
Confidence 99999999999999999999999999999999999999999999999876 99999999995 78999999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+|+.|+.+++.
T Consensus 508 iVE~G~~~~v~ 518 (539)
T COG1123 508 IVEEGPTEKVF 518 (539)
T ss_pred EEEeCCHHHHh
Confidence 99999887764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=347.84 Aligned_cols=218 Identities=22% Similarity=0.325 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|... ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHH
Confidence 58999999999421 1245999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .++..||.||+.++.... .....+..++++++++.+||.+..++. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVA 150 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 566789999998865422 223444456788999999998776664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++. .||++++|++|+++..|+++++.
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 4564 69999999999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=376.98 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 59999999999 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 123599999999999999999999886321 1233466888999999987777755 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999999999999988899999999995 6788999999999999999999987653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=340.77 Aligned_cols=221 Identities=25% Similarity=0.341 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999983 4679999999999999999999999999999999999865 321248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ .||+||+.+....+.. ......++.+.+.++.+++........ +..+..|||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~q 155 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQ 155 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHH
Confidence 1356999999998888 6999999987543211 112222345677788887742211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||+|++|++|+++..|++.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 67889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 234 ~ 234 (252)
T PRK14255 234 M 234 (252)
T ss_pred H
Confidence 5
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=343.19 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++|++++|+|+|||||||||++|+|+++|+. ..+|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999993 3569999999999999999999999999999999999988731 137999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1346999999988888 899999988753321 1123334466788999999854322222 2255689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC-----CeEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVY 275 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~-----G~iv~ 275 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ .++.++||+|++|++ |++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999875 589999999996 688999999999999 99999
Q ss_pred EeCchhHH
Q 010936 276 FGETSAAF 283 (497)
Q Consensus 276 ~G~~~~~~ 283 (497)
.|+++++.
T Consensus 237 ~~~~~~~~ 244 (261)
T PRK14258 237 FGLTKKIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99998764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=319.65 Aligned_cols=211 Identities=31% Similarity=0.417 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++++++.+.... ...+||++|++.|++||-+||+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 478888888875432 3467999999999999999999999999999999999999986 999999998742
Q ss_pred ---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 125 ---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.+++|+|||...+.|+||..||+...+.++.. +..+....+.++|+.+||.+..+. +|.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHH
Confidence 2346899999999999999999999999887632 233445678899999999877665 67789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||+||||++..|+|||.||||.+||..+..+|.++|-.+.++ |.|.|++|||| .+...|||.+-|.+|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999875 99999999997 4788999999999999864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=334.18 Aligned_cols=197 Identities=33% Similarity=0.446 Sum_probs=169.7
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---C-----
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L----- 125 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~----- 125 (497)
++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 367888882 467999999999999999999999999999999999999885 899999998732 1
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++.+ .+||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHH
Confidence 1346999999999999999999999875432 2233444567889999999987777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
||+||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++ . ...+||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~-~~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP-E-VAKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-H-HHhhcCEEEeC
Confidence 99999999999999999999999999999999999987799999999996 3 45789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=395.37 Aligned_cols=251 Identities=25% Similarity=0.301 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|.+|+.++++.+++... ... .+.... . .........|+++|+++.|+. ..+++|+|+|+++++
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~-~~~--~~~~~~----~---~~~~~~~~~I~~~~vsf~y~~---~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLL-EEE--EAPAAG----S---EPSPRLSGYVELRNITFGYSP---LEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHcCCCcccc-ccc--cccccc----c---ccCCCCCCeEEEEEEEEecCC---CCCCcccceeEEEcC
Confidence 567899999999986554321 000 000000 0 000111235999999999952 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-- 578 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-- 578 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC--
Confidence 9999999999999999999999999996 8999999998532 24689999999999986 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|++||||||||+||+.+
T Consensus 579 ---~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 579 ---TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred ---CCCH----HHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 1222 224444554444 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|++ .++|+|++||+++ ....||+|++|++|++++.|+.+++.+
T Consensus 651 e~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 651 EKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999976 4899999999963 456799999999999999999988764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=395.07 Aligned_cols=245 Identities=30% Similarity=0.412 Sum_probs=196.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++++|+.++++.+|...... ... . .+....|+++|+++.|+.. +++++|+|+||++++
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~--------------~~~--~-~~~~~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 506 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTG--------------TLA--P-LNLEGLIEFQDVSFSYPNR--PDVPVLKGLTFTLHP 506 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC--------------CCC--C-CCCCCeEEEEEEEEECCCC--CCCccccCceEEEcC
Confidence 57889999999998765532100 000 0 0112259999999999531 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.++|+||||||||||+++|+|+++|. +|+|.+||++... .++.++||+|++.+|+. |++|||.++..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998532 24679999999999986 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|+|||||||||+||+.+
T Consensus 581 ---~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 581 ---DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1122 334555555554 4457898986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+ .. ..+++|+|++||+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 653 e~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 653 EQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999988 22 235899999999963 467799999999999999999988754
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=393.11 Aligned_cols=247 Identities=26% Similarity=0.393 Sum_probs=199.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.++.+|+.++++.+++... . ... . ........|+++|++++|+. ..+++|+|+|+++++
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~---~-~~~---------~---~~~~~~~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPE---G-TRF---------L---HRPRLQGEIEFRNVSFAYPG---QETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCC---C-CCC---------C---CCCCccceEEEEEEEEEeCC---CCccceeeeeEEECC
Confidence 467899999999986654211 0 000 0 00011225999999999942 245799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 9999999999999999999999999996 9999999998542 24679999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ +++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 565 ---~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 565 ---YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred ---CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 12222 2344444443 44567999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 637 e~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 637 EERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999998864 799999999973 467899999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=336.17 Aligned_cols=209 Identities=29% Similarity=0.470 Sum_probs=179.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|..+. +.+.+|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHH
Confidence 68899999984211 1267999999999999999999999999999999999999885 9999999987521
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+|+.||+.++..... .....+...++.++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv 150 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRV 150 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHH
Confidence 13569999999999998999999998764321 123444556789999999998777664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ + +.++||++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999986 489999999996 3 5689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=345.00 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|++++. .+.+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 599999999993 457999999999999999999999999999999999998741 0248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+...... .......++.++++++.+++.+...+.. +..+..|||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 175 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQ 175 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHH
Confidence 13569999999998886 99999988754321 1122233456788889889864211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999999996 67889999999999999999998776
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 5
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=344.59 Aligned_cols=223 Identities=20% Similarity=0.323 Sum_probs=180.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~- 125 (497)
...|+++|+++.|. .+.+|+|+||++++|++++|+|+||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 22 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred ceEEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 34699999999983 4569999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++. ||+||+.++..... .......++.+.+.++.+++.+...... +..+..|||||
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe 172 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQ 172 (271)
T ss_pred cccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHH
Confidence 13569999999988875 99999998754321 1122223445677777775532111111 22556899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 79999999996 678899999999999999999988
Q ss_pred hhH
Q 010936 280 SAA 282 (497)
Q Consensus 280 ~~~ 282 (497)
+++
T Consensus 251 ~~~ 253 (271)
T PRK14238 251 DKI 253 (271)
T ss_pred HHH
Confidence 765
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=394.44 Aligned_cols=246 Identities=23% Similarity=0.286 Sum_probs=197.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|.+|+.++++.+++..... .. .. .......|+++|+++.|+ .++++|+|+|+++++
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~~----~~-------~~-----~~~~~~~I~~~~vsf~y~----~~~~iL~~isl~i~~ 499 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINKK----KR-------TE-----LNNLNGDIVINDVSYSYG----YGSNILSDISLTIKM 499 (708)
T ss_pred HHHHHHHHHHHHHcCCCcccccc----cc-------cC-----CCCCCCcEEEEEEEEEcC----CCCcceeceeEEECC
Confidence 57789999999997655432100 00 00 001122599999999994 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|+|+++|+ +|+|++||.++.. .++.++||+|++.+|+. |++|||.++...
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~- 574 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE- 574 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC-
Confidence 9999999999999999999999999996 9999999998532 24679999999999987 999999986321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ ++...||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 575 ---~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 575 ---NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred ---CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 12222 2344444443 34567899987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 4799999999973 567899999999999999999988754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=352.66 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=187.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~--- 124 (497)
..|+++|+++.|.. +.+.+|+|+||+|++||++||+|||||||||||++|+|+..+. .+.+|+|.++|.++.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999942 2356999999999999999999999999999999999998531 124899999999863
Q ss_pred ----CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..++.++||||++.+++ .|++||+.|+.... ... .....+.+.++++.++|.+..++.++. ++..|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12357999999999886 69999999875332 122 222234567888888886554455543 677899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++ ..+.++||+|++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999876 69999999995 678889999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=340.61 Aligned_cols=216 Identities=22% Similarity=0.303 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CceeEEEECCEecCC---C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~---~ 126 (497)
.|+++|+++.| ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999988 1469999999999999999999999999999999999998710 138999999987532 1
Q ss_pred cCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHH
Q 010936 127 FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 ~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++|++|++. +.+.+|+.+++.+.+... .... ..+.+.++++.++|.+ ..++ .+..|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHH
Confidence 246999999974 456689999987754322 1111 2356888999999975 2344 44679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999764 89999999996 5788899999999999999999887
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 227 ~~~ 229 (254)
T PRK10418 227 TLF 229 (254)
T ss_pred HHh
Confidence 653
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=339.62 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 489999999993 4679999999999999999999999999999999999986 211248999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++ .||+||+.++..... ........+.+.++++.+++.. ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCH
Confidence 1346999999998886 699999988654321 1112233456788899999852 2333 4568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||++ .++.++||++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 68999999996 5788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+.+++
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 88765
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=342.78 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=170.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHH
Confidence 468899998832 2356999999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
++.++|++|++.+++ .||.||+.+.... ....... ..+.++++.+ ++....+. ++.+|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~ 143 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQ 143 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHH
Confidence 356999999988875 6999999875321 1111111 1123344444 33333333 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ .++ ..||++++|++|++++.|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STV-KNADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999964 89999999997 455 56999999999999999998
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 221 ~~~~ 224 (237)
T cd03252 221 DELL 224 (237)
T ss_pred HHHH
Confidence 7754
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=345.91 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=182.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~ 125 (497)
....|+++|+++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ |..+.+|+|.++|.+...
T Consensus 36 ~~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 344689999999983 3569999999999999999999999999999999999864 310138999999987421
Q ss_pred -------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCC
Q 010936 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRG 194 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~ 194 (497)
.++.++|++|++.+++. ||.||+.+...... ..+....++.+.++++.+|+. +..++ .+..
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 182 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALG 182 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chhh
Confidence 13569999999988885 99999998754321 112233345677888888874 23333 4568
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 58999999996 6788999999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
..|+++++.
T Consensus 261 ~~g~~~~~~ 269 (286)
T PRK14275 261 EHAPTAQLF 269 (286)
T ss_pred EeCCHHHHH
Confidence 999887653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=367.82 Aligned_cols=245 Identities=27% Similarity=0.357 Sum_probs=203.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+..+|+.|+-++.+++|+..- + ..+...... .++++|+|++|+. +..++|+|+||++++
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~---------~--------~~~~~~~~~-~l~~~~vsF~y~~---~~~~~L~~~~l~l~~ 363 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTF---------P--------DEQTATTGQ-ALELRNVSFTYPG---QQTKALKNFNLTLAQ 363 (573)
T ss_pred HHHHHHHHHhhhccCCcccCC---------C--------ccccCCccc-eeeeccceeecCC---CccchhhccceeecC
Confidence 456889999999988877531 0 001111112 6999999999963 345799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||-+||+|+||||||||+.+|+|.++|. +|+|.+||.++... ++.+++++|...+|.+ |+++||.++..-
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~- 438 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD- 438 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC-
Confidence 9999999999999999999999999996 99999999875322 3468999999999988 999999987432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. +.+.++++.+||+ +..||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+
T Consensus 439 ----AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 439 ----ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred ----CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 222 3466677777774 356778887 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..++++.|.+..+ |+|+|++||+.. -.+.||+|++|++|++++.|..+++..
T Consensus 510 E~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 510 ERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 9999999988655 899999999974 367899999999999999999988754
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=338.20 Aligned_cols=218 Identities=23% Similarity=0.310 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~--~~~~~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+||||++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 599999999983 35799999999999999999999999999999999998 3554 8999999987532
Q ss_pred --CcC-cEEEEcCCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 --SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP----DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --~~~-~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
..+ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+. ...++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 112 478999999999999999999876432110 0111223345678899999997 34555432 25999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (497)
||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+ ||++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987799999999996 556666 899999999999999
Q ss_pred eCchh
Q 010936 277 GETSA 281 (497)
Q Consensus 277 G~~~~ 281 (497)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=341.56 Aligned_cols=222 Identities=23% Similarity=0.280 Sum_probs=184.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~- 125 (497)
+..+.++++++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|+++|.+...
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 6 PIVMDCKLDKIFY-----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CceEEEEeEEEEe-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 3468899999988 34679999999999999999999999999999999999997611 148999999987521
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++.++ .+|+.||+.++..... . ..+....+.++++.++|.+..+...+ .+++.|||||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~ 154 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQ 154 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHH
Confidence 134699999999888 4899999998765421 1 12334568889999998654322222 2567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee--------CC
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------GG 271 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~--------~G 271 (497)
+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|+ +|
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCc
Confidence 9999999999999999999999999999999999999999964 79999999996 57889999999996 89
Q ss_pred eEEEEeCchhHH
Q 010936 272 KTVYFGETSAAF 283 (497)
Q Consensus 272 ~iv~~G~~~~~~ 283 (497)
++++.|+.+++.
T Consensus 233 ~i~~~g~~~~~~ 244 (261)
T PRK14263 233 YLVEMGPTAQIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999987653
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=339.49 Aligned_cols=217 Identities=29% Similarity=0.347 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-----~~~ 125 (497)
.|+++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccccc
Confidence 589999999993 356999999999999999999999999999999999999885 8999999875 321
Q ss_pred ---------CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 010936 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (497)
Q Consensus 126 ---------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (497)
..+.++|++|++. +++.+|+.+|+.+..... . ..........+.++++.+|+.+ ..++. +.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~ 147 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PR 147 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----ch
Confidence 1235899999974 456679999997643211 0 0111233467889999999963 55554 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++ .++..+||++++|++|+
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGR 226 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 89999999995 67888999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+++.|+++++.
T Consensus 227 i~~~~~~~~~~ 237 (253)
T TIGR02323 227 VVESGLTDQVL 237 (253)
T ss_pred EEEECCHHHHh
Confidence 99999877653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=373.02 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=186.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.| +++.+|+||||++++|++++|+||||||||||+++|+|+++|. ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 7899999999 3467999999999999999999999999999999999998761 138999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++||+|++.+++.+||.||+.++....... .....+..++++++++.+||.+.. ++. +.+|||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv 150 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLV 150 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998875332110 122334456788999999997654 343 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||+|++|++|+++..|+++++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999999988899999999995 678899999999999999999987653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=337.01 Aligned_cols=204 Identities=28% Similarity=0.332 Sum_probs=171.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecCC---CcCcEEEEcCCCC--CCCCCC
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---SFGTAAYVTQDDN--LIGTLT 144 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~--l~~~lT 144 (497)
+|+|+||++++|++++|+||||||||||+++|+|+++|. ...+|+|.++|++... ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999871 0028999999987532 1246999999984 567789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
+.|++.+..... .........++.++++.++|.+ ..++ .+..|||||||||+|||+|+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 1112334566889999999973 3444 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 89999999996 6788999999999999999999887653
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=378.62 Aligned_cols=246 Identities=28% Similarity=0.419 Sum_probs=196.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.++.... . ... ......++++|+++.|+. +++++|+|+|+++++
T Consensus 286 ~~~~~~~ri~~~l~~~~~~~~-------~-------~~~-----~~~~~~i~~~~v~~~y~~---~~~~~l~~~~~~i~~ 343 (544)
T TIGR01842 286 GARQAYKRLNELLANYPSRDP-------A-------MPL-----PEPEGHLSVENVTIVPPG---GKKPTLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHhCCccccC-------C-------CCC-----CCCCCeEEEEEEEEEcCC---CCccccccceEEEcC
Confidence 578999999999976544210 0 000 011235999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999987532 24579999999999987 99999986431
Q ss_pred CCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
..+.++.. ...++.++. +++..|+.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.
T Consensus 418 ---~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 ---NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred ---CCCHHHHHHHHHHhChHHHHHh--CccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 12222211 112334443 34456788876 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+.+.|+++..+|+|+|+++|++. ..+.||+|++|++|++++.|+.+++.
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999998766899999999963 46789999999999999999987764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=343.68 Aligned_cols=223 Identities=24% Similarity=0.294 Sum_probs=181.7
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL 125 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~ 125 (497)
....|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 17 ~~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CCceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 345799999999993 457999999999999999999999999999999999998631 1248999999987521
Q ss_pred -------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++. ||.||+.+....+ ... ...++.+.+.++.+++........ +.++..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgG 165 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGG 165 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCCHH
Confidence 13579999999988875 9999998875432 111 122344667788888742211111 2255689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee---------
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------- 269 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~--------- 269 (497)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999965 68999999996 68899999999997
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|+++++.
T Consensus 244 ~G~~~~~g~~~~~~ 257 (274)
T PRK14265 244 RGKLVEFSPTEQMF 257 (274)
T ss_pred CceEEEeCCHHHHH
Confidence 89999999998764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=341.47 Aligned_cols=222 Identities=25% Similarity=0.291 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEcc----CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 010936 51 RLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~- 125 (497)
.|+++|+++.|... ...++.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 48899999998420 001367999999999999999999999999999999999999885 9999999986421
Q ss_pred -------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (497)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. +..++. +..|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccC
Confidence 135699999997 46678899999977543211 123344456788999999996 455554 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999875 89999999996 6788899999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
+.|+++++.
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999887753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=372.41 Aligned_cols=214 Identities=21% Similarity=0.271 Sum_probs=183.8
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------CcC
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFG 128 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~~~ 128 (497)
+|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 2 ~nl~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSF-----PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEe-----CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhC
Confidence 6788888 3467999999999999999999999999999999999999886 8999999987532 124
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.++............+..++++++++.+|+.+..++.+ .+|||||||||+||+|
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKA 148 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHH
Confidence 69999999989999999999987642110101123344567889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++..+||++++|++|+++..|+++++
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999987899999999996 678899999999999999999987664
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=379.41 Aligned_cols=223 Identities=27% Similarity=0.337 Sum_probs=189.4
Q ss_pred eEEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 50 ARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..|+++||++.|..+.+ ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|+++|.++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 36999999999942100 1246999999999999999999999999999999999999885 89999999875
Q ss_pred CC--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 010936 124 KL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHL 192 (497)
Q Consensus 124 ~~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 192 (497)
.. .++.++||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||. +..++ ++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YP 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 21 134699999997 58899999999998654321 112334456788999999996 45565 45
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
++|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||++|||+ ..+..+||+|++|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999875 89999999995 6889999999999999
Q ss_pred eEEEEeCchhHH
Q 010936 272 KTVYFGETSAAF 283 (497)
Q Consensus 272 ~iv~~G~~~~~~ 283 (497)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=343.43 Aligned_cols=216 Identities=24% Similarity=0.364 Sum_probs=180.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 38 ~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 3589999999993 4679999999999999999999999999999999999986310 148999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (497)
..+.++|++|++.+++. ||.||+.+..... .... ....+++++++.+||.+ ..++ ++.+||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCC
Confidence 13569999999988886 9999999875432 1122 33456888999999853 2333 456899
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE-EeeCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVY 275 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~-~L~~G~iv~ 275 (497)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||++||++ .++..+||+++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 8999999996 67888999975 579999999
Q ss_pred EeCchhH
Q 010936 276 FGETSAA 282 (497)
Q Consensus 276 ~G~~~~~ 282 (497)
.|+++++
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9987764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=326.19 Aligned_cols=187 Identities=56% Similarity=0.865 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEEccC-CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC--
Q 010936 51 RLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~-- 125 (497)
.|+++|+++.|.... ...+.+|+|+||++++|++++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHh
Confidence 589999999995210 01257999999999999999999999999999999999999 775 8999999997542
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++|++.+++.+|++||+.+.... . .||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~~qrv~l 122 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGERKRVSI 122 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHHHHHHHH
Confidence 235699999999999999999999765311 0 499999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++..++.++||++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999997779999999999744688899999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=338.31 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=172.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHH
Confidence 468999999831 1236999999999999999999999999999999999999885 9999999987431 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
.+.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.+..+. .+..|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~ 143 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQ 143 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHH
Confidence 356999999998887 5999999876421 1111111 1234455555 45444443 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||++ .++.. ||++++|++|+++..|++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999999999964 89999999996 46654 999999999999999988
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++..
T Consensus 221 ~~~~~ 225 (234)
T cd03251 221 EELLA 225 (234)
T ss_pred HHHHH
Confidence 76543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=336.60 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=183.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~-- 125 (497)
+.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.++..
T Consensus 2 ~~l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 2 YRIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred cEEEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 358899999998 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++. |+.||+.+...... .......++++.++++.+|+.+...... +..+..||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~ 152 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHH
Confidence 13569999999998885 99999988653321 1122334567888999999854322112 234568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++...||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999965 79999999996 6889999999999999999999987
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 231 ~~ 232 (250)
T PRK14266 231 QI 232 (250)
T ss_pred HH
Confidence 75
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=391.92 Aligned_cols=251 Identities=29% Similarity=0.391 Sum_probs=209.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|..||.+|+++++.+|..+..- +. .. ..+...-.|+++||++.|+.+ ++.+||+|+|+++++
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~--------~~---~~----~~~~~~G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDS--------TS---GG----KLPNVKGDIEFRNVSFAYPTR--PDVPVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCC--------CC---CC----ccccceeEEEEeeeEeeCCCC--CCchhhcCCcEEecC
Confidence 47889999999999999654211 00 00 011223359999999999854 568899999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+|||||||||.+.+|-.+++|. +|.|.+||.+++. .++++|.|.|+|.||.. |++|||.|+..
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-- 1089 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-- 1089 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC--
Confidence 9999999999999999999999999996 9999999998643 25789999999999987 99999999921
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
..+..+..+ .+.+.+ .+|++.+||.||+ +..+||||||||++||||+++||+||||||.||+||+++.+
T Consensus 1090 ---~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1090 ---EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred ---CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 133333322 233333 4789999999997 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+.+.|.+.. .|+|.|++.|+++ ..+.||.|.++++|+++++|+.++++.
T Consensus 1164 vVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999975 4899999999975 467899999999999999999998875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=369.82 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++.+||.||+.++............+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVE 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHH
Confidence 13569999999999999999999998642111111223444567889999999987666644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999987899999999996 678899999999999999877653
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=378.92 Aligned_cols=245 Identities=28% Similarity=0.405 Sum_probs=195.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++..+++|+.++++.++..+... . ... . ......++++|+++.|+ +.+.+|+|+|+++++
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~-----~--------~~~--~-~~~~~~I~~~~vsf~y~----~~~~iL~~inl~i~~ 360 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPP-----G--------AID--L-GRVKGAVEFDDVSFSYD----NSRQGVEDVSFEAKP 360 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC-----C--------CCC--c-CCCCCeEEEEEEEEEeC----CCCceecceeEEECC
Confidence 46678888888887544321100 0 000 0 01122599999999994 225699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+|+||||||||+|+|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++||+.++..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 434 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-- 434 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999997542 24679999999999986 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++.++ +++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 435 ---~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 435 ---DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred ---CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 12222 2334444444 34567888886 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++.+ ++|+|++||++ ...+.||+|++|++|+++..|+.+++.
T Consensus 507 ~~~i~~~l~~~~~-~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 507 EAKVKAALDELMK-GRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999998754 79999999996 356889999999999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=339.20 Aligned_cols=214 Identities=29% Similarity=0.405 Sum_probs=170.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|... +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHH
Confidence 4689999988421 1356999999999999999999999999999999999999885 9999999987431 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
.+.++|++|++.+++ .||+||+.+..... ....... .+.++++.+ ++....++ .+..|||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~ 144 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQ 144 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHH
Confidence 246999999998886 59999998753211 1111111 112222222 33222222 457899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 789999999996 4565 8999999999999999987
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++..
T Consensus 222 ~~~~~ 226 (238)
T cd03249 222 DELMA 226 (238)
T ss_pred HHHhh
Confidence 76543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=376.63 Aligned_cols=245 Identities=29% Similarity=0.409 Sum_probs=199.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++..+.+|+.++++.++..+... .+ . .+..-.++++|++++|+. .++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~-------------~-~~~~~~i~~~~v~f~y~~---~~~~il~~inl~i~~ 357 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTGT----RA-------------I-ERARGDVEFRNVTFRYPG---RDRPALDSISLVIEP 357 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC----CC-------------C-CCCCCeEEEEEEEEEcCC---CCCccccCeeEEecC
Confidence 56789999999997655532100 00 0 011124999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.++|+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 431 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-- 431 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 8999999987532 23579999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
...+. +.+.++++.+|+ ++..||.+|+ ....||||||||++||||++++|++++||||||+||+.+
T Consensus 432 --~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 --EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred --CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11222 335555665554 4557888987 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++. +++|+|++||++ .....||+|++|++|+++..|+.+++.
T Consensus 505 ~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 505 ERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999885 469999999996 467889999999999999999988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=324.68 Aligned_cols=186 Identities=48% Similarity=0.808 Sum_probs=161.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecC-CCc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTK-LSF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~-~~~ 127 (497)
.|+++|+++.|..+. .++.+|+|+||++++|++++|+||||||||||+++|+|+.. | .+|+|.++|++.. ...
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHhh
Confidence 588999999994211 12579999999999999999999999999999999999863 4 4899999998753 223
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+.... . .|||||||||+|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhHHHHHHH
Confidence 5699999999999999999999875310 0 49999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (497)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877899999999974347889999999998 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=341.33 Aligned_cols=218 Identities=26% Similarity=0.376 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--cC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--FG 128 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~~ 128 (497)
.|+++|+++.|. +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... .+
T Consensus 6 ~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccc
Confidence 589999999994 2357999999999999999999999999999999999999885 89999999875321 23
Q ss_pred cEEEEcCCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 129 TAAYVTQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 129 ~i~yv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++|++|++.+. ...++++++.++...... ...........+.++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHH
Confidence 599999997652 234789988754211000 00111223456788899999988777755 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+++++ +|++++.|+++++
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999987799999999996 6788999999877 8999999988765
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=339.68 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 10 ~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 68999999998 3457999999999999999999999999999999999997631 1248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++. ||.||+.+..... ... ....+.+.++++.+++.+..+... +..+..|||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~q 158 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQ 158 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHH
Confidence 13469999999988884 9999998875432 111 123345667788888743211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee---------CCe
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS---------GGK 272 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~---------~G~ 272 (497)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999976 58999999996 68999999999998 899
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=319.06 Aligned_cols=217 Identities=29% Similarity=0.405 Sum_probs=193.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||.+.| +...+|++||++.++|+++.|||.|||||||+|+||.-+.+|. .|.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 48899999999 5688999999999999999999999999999999999999986 8999999985311
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 010936 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (497)
.+.+.++|+|..+++++|||.||+.-+..--+ +.++.+..++++.+|..+||.+..|. ||
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA-----YP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----Cc
Confidence 01246899999999999999999987533211 45677888899999999999887764 77
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ..+.+...+|+.|.+|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 78999999999999999999999999999999999999999999999999999999999995 68889999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+-+.|+|++++
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999999864
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=329.04 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--Cc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SF 127 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~ 127 (497)
..++++|+++.+ +++.+|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhh
Confidence 368999999998 3457999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+|+.||+.+....+ .. ...+.+.++++.++|.+..++.+ ..|||||||||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHH
Confidence 45899999999999999999998875432 11 12345678899999987777655 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+|+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999988899999999996 689999999999863
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=332.59 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=171.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (220)
T cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76 (220)
T ss_pred EEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHH
Confidence 789999999831 1256999999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCCHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGER 200 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGer 200 (497)
.+.++|++|++.+++ .||.||+.+.... .. ...+.++++.+++.+..++... ...+..||||||
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 246999999998887 5999999775321 11 2345677888888765554321 113468999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++ ..+ ++||++++|++|++++.|
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999998765 8999999996 444 799999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.31 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC------EecC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTK 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G------~~~~ 124 (497)
.+.++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++| .+..
T Consensus 10 ~i~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 10 VFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred heeeeeEEEec-----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccc
Confidence 48999999999 4577999999999999999999999999999999999999885 65555554 4432
Q ss_pred C-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCC
Q 010936 125 L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGI 195 (497)
Q Consensus 125 ~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~L 195 (497)
. .+..++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+++.+ ..++ .+..|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~L 154 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS-----PASQL 154 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-----CcccC
Confidence 1 13568999999999999999999998754321 1123344567888999999964 2333 45679
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
|||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||++ ..+..+||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 69999999995 67889999999999999999
Q ss_pred EeCchhHH
Q 010936 276 FGETSAAF 283 (497)
Q Consensus 276 ~G~~~~~~ 283 (497)
.|+.+++.
T Consensus 233 ~g~~~~~~ 240 (257)
T PRK14246 233 WGSSNEIF 240 (257)
T ss_pred ECCHHHHH
Confidence 99887654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=378.22 Aligned_cols=221 Identities=26% Similarity=0.328 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT------- 123 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~------- 123 (497)
.|+++||++.|.... +..++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccc
Confidence 599999999994211 1357999999999999999999999999999999999999885 89999998632
Q ss_pred ------C------CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 010936 124 ------K------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTV 186 (497)
Q Consensus 124 ------~------~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ 186 (497)
. ...+.+|||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||.+ ..++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-
Confidence 0 0123699999997 68888999999999865421 2344555678899999999964 2444
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeE
Q 010936 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 187 vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v 265 (497)
++.+|||||||||+||+||+.+|+||||||||++||+.++.+++++|++++++ |+|||++||++ ..+.++||+|
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 55689999999999999999999999999999999999999999999999865 99999999995 6788999999
Q ss_pred EEeeCCeEEEEeCchhHH
Q 010936 266 YLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~ 283 (497)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999887764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=337.10 Aligned_cols=198 Identities=28% Similarity=0.401 Sum_probs=171.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV 145 (497)
+|+|+||++++|++++|+||||||||||+++|+|+.++ +|+|.++|++... ..+.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999843 7999999987532 12458999999888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEE
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFL 218 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~-------~p~lllL 218 (497)
+||+.+.... .....+..++++++++.+||.+..++.+ ..||||||||++||+||+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886422 1122334567889999999987766644 5799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||++++|++|++++.|+.+++
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987799999999995 578999999999999999999987765
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=358.24 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=195.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.++|++....
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 358999999999 5678999999999999999999999999999999999999996 99999999975321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 127 ---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
...|+.|+|+..+.|+|||.||+.++..... ..-+++....+++.++|+.+|+....++.++ +||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHH
Confidence 2468999999999999999999998866543 2335677888899999999999655788776 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|.|||||..+++|||||||||+|+......+.+.+++|+++|.+||++||.+ +|++++||||.+|+||+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999988873
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=334.71 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEEcc---------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee
Q 010936 50 ARLTWKDLTVMVTLS---------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~---------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G 114 (497)
+.|+++||++.|+.. ....+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 568999999988762 113457999999999999999999999999999999999999886 89
Q ss_pred EEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 115 ~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
+|.++|. +++++|+..+.+.+||.||+.+..... .....+....++.+++.++|.+..++.+ ..
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 357778877888899999998765432 2234444556778888889987776644 57
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||+|||+||+||+.+|++|||||||+|||+.++..+++.|.++++.|.|||++||++ .++.++||++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999977799999999995 6788999999999999999
Q ss_pred EEeCchhHHH
Q 010936 275 YFGETSAAFE 284 (497)
Q Consensus 275 ~~G~~~~~~~ 284 (497)
..|+.+++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=370.29 Aligned_cols=217 Identities=25% Similarity=0.301 Sum_probs=184.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNG--------- 120 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G--------- 120 (497)
|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|++ +|+ +|+|.++|
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 4689999999 3467999999999999999999999999999999999997 564 89999972
Q ss_pred --------------Eec--------C-------CCcCcEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010936 121 --------------HKT--------K-------LSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170 (497)
Q Consensus 121 --------------~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v 170 (497)
.++ . ..++.++|++|+ +.+++.+||+||+.+..... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 23344556778
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 010936 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (497)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~ 249 (497)
.++++.+||.+..++.+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999987776644 57999999999999999999999999999999999999999999999976 4999999
Q ss_pred EeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 250 ~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
+||++ ..+.++||++++|++|++++.|+++++...
T Consensus 225 vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 225 TSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99996 578889999999999999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=360.23 Aligned_cols=212 Identities=31% Similarity=0.433 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+|+|+++.|. +++++|+++||+|++||-+||+|+|||||||++|+|.++.. + +|+|++||++++.
T Consensus 351 ~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 351 SIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLES 422 (591)
T ss_pred cEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHH
Confidence 499999999994 44569999999999999999999999999999999999988 3 8999999998642
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (497)
.++.|||||||..||.+ ||.+|+.|+..- .+.++ +.+..+..| +++.+.|.||+ +...||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGG 491 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGG 491 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHHH----HHHHHHHcCcHHHHHhccccchhhHhh-cccccccc
Confidence 24679999999999987 999999998432 22222 333334333 45678899997 66779999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+||||++.||+|+++|||||.||.++..++++.+.+. -.|+|+|++.|+. ....-||+|++|++|++.+.|+
T Consensus 492 ekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred hHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEecc
Confidence 999999999999999999999999999999999999999983 3589999999995 4678899999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
.++++.
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 998875
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=334.70 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=170.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. ..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 378999999983 2246999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++. ||+||+.+..... .. ..+.+.++.+++.+..+ +.++ ..+..||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G 143 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQG 143 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CH----HHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHH
Confidence 13469999999988876 9999998763211 11 12333344444332211 1221 245789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+||++|+.+|+++||||||+|||+.++..+++.|+++. +|+|||++||++ .++ ..||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999986 489999999996 455 4699999999999999888
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
.+++.
T Consensus 221 ~~~~~ 225 (229)
T cd03254 221 HDELL 225 (229)
T ss_pred HHHHH
Confidence 76653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=355.48 Aligned_cols=254 Identities=27% Similarity=0.378 Sum_probs=211.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|++|..|+.++++..|...... .-.++.-.+.++++++.-+ +..+++|+|+||++.+
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~m-------------------~LP~P~g~L~Ve~l~~~PP---g~~~pil~~isF~l~~ 361 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAERM-------------------PLPAPQGALSVERLTAAPP---GQKKPILKGISFALQA 361 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCCC-------------------CCCCCCceeeEeeeeecCC---CCCCcceecceeEecC
Confidence 58899999999999887754311 0112445699999998432 3568999999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||.|+|.|..+|. +|.|++||.+... .-++|||+||+-.||+. ||.|||.=.....
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccC
Confidence 9999999999999999999999999985 9999999987532 23679999999999998 9999996442111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
.++.+-...+.+.+++++ +.+++.+||.||+ ....||||||||+++||||..+|.+++||||-|+||..-...+.+.
T Consensus 438 d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 438 DPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 111111223334566666 5788999999997 6678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 237 L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++..+
T Consensus 515 i~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999974 78999999999999999999999987644
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=332.06 Aligned_cols=202 Identities=29% Similarity=0.357 Sum_probs=171.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
+.++++++.| +.+++|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|+++|++...
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh------
Confidence 6677787777 4578999999999999999999999999999999999999886 9999999986421
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
..+...+++.+||+||+.+..... .....+.++.+.++++.++|.+..++.+ .+||||||||++|||+|+.
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 111234557789999999875432 1233444556788999999988777755 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||++++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987789999999995 6788899999999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=325.82 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=170.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhh
Confidence 7889999998 3467999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||.||+.+....+. . ...++++++++.+||.+..++.+ ..||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHH
Confidence 568999999999999999999998764321 1 12356788999999987766644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
||+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++....+|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999987789999999996 5676766777766
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=332.05 Aligned_cols=218 Identities=28% Similarity=0.345 Sum_probs=177.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~---- 125 (497)
|+++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+. +|. +|+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 78999999983 467999999999999999999999999999999999995 464 8999999986421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc-cC--C-CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARL-RL--P-DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~-~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
....++|++|++.+++.+|+.+++.+.... .. . .........+.++++++.+++.+ ..++.+. +.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHH
Confidence 124599999999988888887776543211 10 0 00112233456788899999953 4444331 269999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (497)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999987789999999996 566666 8999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+.+.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=409.11 Aligned_cols=255 Identities=23% Similarity=0.307 Sum_probs=200.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++|+.++++.+|..+..-.+ . .. .. ........|+++||++.|+.+ +++++|+|+||+|++
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~~~~~---~--~~-----~~--~~~~~~g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~ 1193 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDVRDNG---G--IR-----IK--NKNDIKGKIEIMDVNFRYISR--PNVPIYKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCCCc---c--cc-----cc--cCCCCCceEEEEEEEEECCCC--CCCccccCeeEEEcC
Confidence 5889999999999876643210000 0 00 00 000112259999999999632 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCC---------------------------------------------------C
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASN---------------------------------------------------A 110 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~---------------------------------------------------~ 110 (497)
|+.+||+||||||||||+++|+|+++|. .
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999872 0
Q ss_pred CceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------C
Q 010936 111 FLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-------G 178 (497)
Q Consensus 111 ~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------g 178 (497)
+.+|+|++||.++.. .++.++||+|++.+|+. |++|||.|+.. ..+.++ +.++++.. .
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~ 1343 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATRED----VKRACKFAAIDEFIES 1343 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHh
Confidence 148999999998632 24679999999999976 99999999732 123332 33333332 4
Q ss_pred CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChH
Q 010936 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE 257 (497)
Q Consensus 179 L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~ 257 (497)
|++.+||.||+ +...||||||||++|||||+++|+|||||||||+||+.++..|.+.|.++. .+++|+|+++|+++
T Consensus 1344 LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls-- 1420 (1466)
T PTZ00265 1344 LPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA-- 1420 (1466)
T ss_pred CccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--
Confidence 56788999996 677899999999999999999999999999999999999999999999986 36899999999963
Q ss_pred HHhcCCeEEEeeC----CeEE-EEeCchhHH
Q 010936 258 VFELFDRLYLLSG----GKTV-YFGETSAAF 283 (497)
Q Consensus 258 i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 283 (497)
..+.||+|++|++ |+++ +.|+.++++
T Consensus 1421 ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1421 SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 4677999999999 9955 899988875
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=331.64 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=172.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++. ||+||+.+....+. .. ...+++.++++.+++. ...++. +..|||||+|||+
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~ 147 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRIS 147 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHH
Confidence 13468999999988875 99999988644321 11 1234577899999996 355554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEee-CCeEEEEeC
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 278 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~-~G~iv~~G~ 278 (497)
|||+|+.+|+++||||||+|||+.++..+.+.|+++.++ |.|||++||++ +++ ..||++++|+ ++..+..|.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999999999999764 89999999996 456 5799999995 454445553
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=325.07 Aligned_cols=194 Identities=28% Similarity=0.366 Sum_probs=169.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhh
Confidence 4689999998 3467999999999999999999999999999999999999886 8999999987431 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+..... ..++++++++.++|.+..++.+ ..||||||||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lar 138 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADH---------SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALAR 138 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccc---------cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHH
Confidence 57999999999998999999998863211 2356788999999987776654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+|+.+|+++||||||+|||+.++..+.+.|+++.++|.|+|++||++ .++...|++++++
T Consensus 139 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 99999999999999999999999999999999887799999999996 5678899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=383.31 Aligned_cols=246 Identities=26% Similarity=0.414 Sum_probs=197.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++.+|+.++++.+++... . .. .. . ......++++|+++.|+. ..+.+|+|+|+++++
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~----~-~~-------~~----~-~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRS----A-GL-------AA----L-PELRGAITFENIRFRYAP---DSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccC----C-CC-------CC----C-CCCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578899999999976554211 0 00 00 0 011235999999999952 235699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+|+||||||||+++|+|+++|. +|+|++||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-- 556 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-- 556 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999998542 24579999999999986 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ +++..||.+|+ ....||||||||++|||||+++|++|||||||++||+.+
T Consensus 557 ---~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 557 ---GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred ---CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 12222 2333444433 34567888886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +++|+|++||++. . ...||+|++|++|++++.|+.+++.+
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999984 5799999999973 4 46699999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=404.92 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=198.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
-.|+++||++.|.. ..+.+|+||||.|++||++||+||||||||||+|+|+|.++|+ +|+|+++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 35999999999931 1367999999999999999999999999999999999999986 9999999987531
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.+||+||++.+++.+||+|++.+.+.++ +.+.++.++.++++++.+||.+..|+.++ +|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2356999999999999999999999877664 23444556678899999999988887664 699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
|+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||||++|.+|+++..|+++++...
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999995 789999999999999999999999998776
Q ss_pred HH
Q 010936 286 FA 287 (497)
Q Consensus 286 f~ 287 (497)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 54
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=375.49 Aligned_cols=244 Identities=26% Similarity=0.334 Sum_probs=196.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.++.... + . .. . ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~~----~--~-------~~-~----~~~~~~I~~~~v~~~y~~---~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVKD----G--S-------EP-V----PEGRGELDVNIRQFTYPQ---TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHcCCCcccC----C--C-------CC-C----CCCCCcEEEEEEEEECCC---CCCccccCeeEEECC
Confidence 578899999999976544211 0 0 00 0 001124899999999952 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++|++|++.+|+. |++||+.++..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999997532 23579999999999986 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ +++..||.+|+ ....||||||||++|||||+++|+++||||||++||+.+
T Consensus 415 ---~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 415 ---DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 12222 2333444443 44567888886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++. +|+|+|++||++. ....||+|++|++|++++.|+.+++.
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999875 5899999999973 45779999999999999999988764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=335.32 Aligned_cols=221 Identities=24% Similarity=0.315 Sum_probs=180.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTK--- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~--- 124 (497)
..|+++|+++.|. .+++|+|+||++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 4589999999993 4579999999999999999999999999999999999987521 14899999997532
Q ss_pred ------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
...+.++|++|++.+++. ||+||+.+..... ... ....++.+.++++.+++.+...... +..+..|||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~ 164 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSG 164 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCH
Confidence 113468999999999986 9999998875432 111 1223456777888888742211111 124567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+|||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 68999999995 6788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+.+++
T Consensus 243 ~~~~~ 247 (265)
T PRK14252 243 ATDTI 247 (265)
T ss_pred CHHHH
Confidence 88765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=368.15 Aligned_cols=222 Identities=23% Similarity=0.342 Sum_probs=185.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEEC-CEe---cC-
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHK---TK- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~-G~~---~~- 124 (497)
..|+++|+++.|.....+.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccccc
Confidence 369999999998421112356999999999999999999999999999999999999885 8999996 532 11
Q ss_pred -------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccc
Q 010936 125 -------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-----CADTVIGNWHL 192 (497)
Q Consensus 125 -------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~ 192 (497)
..++.++|++|++.+++.+||.||+.+...+. .+....++++.++++.+||.+ ..++ ++
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~ 425 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK-----YP 425 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----Ch
Confidence 11246999999998999999999998864321 223334466888999999975 3454 45
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||++++|++|
T Consensus 426 ~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDG 504 (520)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999999765 89999999996 6888999999999999
Q ss_pred eEEEEeCchhHHH
Q 010936 272 KTVYFGETSAAFE 284 (497)
Q Consensus 272 ~iv~~G~~~~~~~ 284 (497)
++++.|+++++.+
T Consensus 505 ~i~~~g~~~~~~~ 517 (520)
T TIGR03269 505 KIVKIGDPEEIVE 517 (520)
T ss_pred EEEEECCHHHHHh
Confidence 9999998877643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=340.30 Aligned_cols=225 Identities=29% Similarity=0.415 Sum_probs=182.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..|+++||++.|. .+.+|+++||++++||+++|+|+|||||||||++|+|++++. ...+|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3689999999993 467999999999999999999999999999999999998631 0248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccCc
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---------DKMP-WSEKRTLVERTIIEMGLQDCADTVIGNW 190 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (497)
.++.++|++|++.+++. ||+||+.++...... .... ....++.+.++++.+++.+...... +.
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 196 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DD 196 (305)
T ss_pred ccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cC
Confidence 12469999999988875 999999987532100 0011 1223456788999998854332222 23
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE-EEee
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-YLLS 269 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v-~~L~ 269 (497)
++..|||||||||+||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEec
Confidence 5678999999999999999999999999999999999999999999999977 48999999996 6788999997 5789
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|+++++.
T Consensus 275 ~G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 GGELVEYDDTDKIF 288 (305)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999887653
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=316.87 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=153.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhh
Confidence 46899999883 356999999999999999999999999999999999999885 8999999987531 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+|+.||+. |||||+||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~lar 108 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQ 108 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHH
Confidence 56999999999999899999863 8999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++.++||++++|++|++
T Consensus 109 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999987789999999996 578889999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=367.09 Aligned_cols=224 Identities=28% Similarity=0.345 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|..+ +..+.+|+|+||++++||++||+||||||||||+++|+|+++|. .+.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 58999999999421 11357999999999999999999999999999999999999762 1148999999987421
Q ss_pred ------CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcccCC
Q 010936 126 ------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC---ADTVIGNWHLRG 194 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~ 194 (497)
..+.++|++|++. +++.+||.+++.+...... ..+..+..++++++++.+||.+. .++ ++.+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~~ 156 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----YPHQ 156 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----CCcc
Confidence 1146999999974 6777899999886543211 23344556778999999999752 355 4457
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||++ ..+..+||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999999996 678899999999999999
Q ss_pred EEEeCchhHH
Q 010936 274 VYFGETSAAF 283 (497)
Q Consensus 274 v~~G~~~~~~ 283 (497)
++.|+++++.
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999887763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=369.03 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 010936 51 RLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~ 124 (497)
.|+++|+++.|..+.+ +.+.+|+||||++++|++++|+||||||||||+++|+|+++ . +|+|+++|+++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5899999999942110 13579999999999999999999999999999999999984 3 899999998642
Q ss_pred C--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 010936 125 L--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLR 193 (497)
Q Consensus 125 ~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 193 (497)
. .++.++|++|++ .+++.+||.||+.++...+.. ..+..+.++++.++++.+||. +..++. +.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 1 124689999996 478889999999987543210 123334456788999999997 356654 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 89999999995 67889999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999887763
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=332.92 Aligned_cols=202 Identities=27% Similarity=0.387 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cCE
Confidence 589999999993 467999999999999999999999999999999999999885 899999872 359
Q ss_pred EEEcCCCCCCCC--CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 131 ~yv~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
+|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++.+ ..|||||||||+||+|
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 999999887775 47787765421 111 234678899999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++ +++..|+++++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999875 89999999996 678899999999965 788999887653
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=372.73 Aligned_cols=246 Identities=25% Similarity=0.335 Sum_probs=193.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.++.+|+.++++.++...... .+ . .. ......++++|+++.|+ +.+++|+|+|+++++
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~~~----~~---------~--~~-~~~~~~i~~~~v~~~y~----~~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREEPA----DA---------P--EL-PNVKGAVEFRHITFEFA----NSSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHHHHHHHcCCccccCCc----cC---------C--CC-CCCCCeEEEEEEEEECC----CCCccccceeEEEcC
Confidence 46788999999987654321100 00 0 00 01122599999999994 235689999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+++. |++||+.++..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999987532 23679999999999875 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.++. .+.++.. .+.+..|+.+|+ .+..||||||||++|||||+++|++|+|||||+|||+.+
T Consensus 435 ---~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 435 ---GATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred ---CCCHHHH----HHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 1222222 2222222 234456777776 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +++|+|++||++ +.+ ..||+|++|++|++++.|+.+++.+
T Consensus 507 ~~~i~~~l~~~~-~~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 507 EARVKNAIDALR-KNRTTFIIAHRL-STV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEcCh-HHH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999874 489999999996 344 6799999999999999999887653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=333.10 Aligned_cols=211 Identities=32% Similarity=0.422 Sum_probs=169.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYD----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHH
Confidence 46889999883 2356999999999999999999999999999999999999885 9999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGe 199 (497)
++.++|++|++.+++ .||+||+.+.... ..... +.+.++..++.+ ..++.+. ..+..|||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHH
Confidence 346999999998886 5999999876321 11111 222222223221 1222222 2456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ ..+. .||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 99999999996 4564 5999999999999998887
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 6653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=372.60 Aligned_cols=248 Identities=29% Similarity=0.411 Sum_probs=196.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.++.+|+.++++.++..+.... + . . ...+....++++|+++.|+.. .++.+|+|+||++++
T Consensus 303 ~~~~~~~ri~~~l~~~~~~~~~~~----~---~----~----~~~~~~~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 303 RAAGAAERLIELLQAEPDIKAPAH----P---K----T----LPVPLRGEIEFEQVNFAYPAR--PDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCCC----C---c----c----CCcCCCceEEEEEEEEECCCC--CCCccccceeEEecC
Confidence 467899999999876544221000 0 0 0 000112359999999999531 226799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.++|+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++|+||++.+|+. |++||+.++..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-- 439 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-- 439 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999987532 13579999999999987 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..|+ ++..|+.+|+ ....||||||||++||||++++|++|+||||||+||+.+
T Consensus 440 ---~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 440 ---DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 1122 335555555554 3456788876 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++. +++|+|++||++ +....||+|++|++|+++..|+.+++.
T Consensus 512 ~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 512 EQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999985 479999999996 356789999999999999999987754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=321.45 Aligned_cols=186 Identities=31% Similarity=0.389 Sum_probs=159.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~---- 125 (497)
++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|.. +|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999983 357999999999999999999999999999999999994 554 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.+..++|++|++.+++.+|+++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1235999999999998888877660 0 1136999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh-cCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+ +||++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 999999999999999999999999999999999999987789999999996 46666 7999999999999999944 45
Q ss_pred HHHH
Q 010936 283 FEFF 286 (497)
Q Consensus 283 ~~~f 286 (497)
...+
T Consensus 192 ~~~~ 195 (200)
T cd03217 192 ALEI 195 (200)
T ss_pred Hhhh
Confidence 4433
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=365.48 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC-CCCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~-~~~~~G~I~~~G~~~~~---- 125 (497)
.|+++|+++.|..+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++| . +|+|.++|++...
T Consensus 259 ~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHH
Confidence 58999999987311 135699999999999999999999999999999999999874 5 8999999987531
Q ss_pred --CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPD--KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
..+.++|++|++ .+++.+||.||+.+........ .....+.+++++++++.++|. +..++.+ ..|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCH
Confidence 124589999995 4788899999998763211100 012333446688999999996 4666654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++ +++.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6889999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=324.83 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=170.7
Q ss_pred EEEEeEEEEEEccC-Cc-ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecCC
Q 010936 52 LTWKDLTVMVTLSN-GE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GH--KTKL 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~--G~--~~~~ 125 (497)
++++|+++.|.... .+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 78999999994211 01 247999999999999999999999999999999999999885 8999998 42 3210
Q ss_pred ---------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 010936 126 ---------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGI 195 (497)
Q Consensus 126 ---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~L 195 (497)
..+.++|++|++.+++.+||.||+.+..... ........+++.++++.+||.+. .+. .+.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccC
Confidence 1246899999999999999999998864332 22333445678889999999753 344 34579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ ..+..+||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987799999999994 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=337.01 Aligned_cols=212 Identities=25% Similarity=0.324 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. +...+|+|+||+|++||+++|+|+||||||||+++|+|+++ . +|+|+++|.++..
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 3889999999952 23569999999999999999999999999999999999986 3 7999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT-------VIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSgG 198 (497)
.++.++|+||++.+|+. ||++|+..... ... +.+.++++.+||.+..+. .+++ ....||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G 142 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHG 142 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHH
Confidence 13579999999999986 99999964311 111 346677788888654433 3333 34569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||+|++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999874 489999999996 5555 599999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=320.19 Aligned_cols=193 Identities=27% Similarity=0.353 Sum_probs=165.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhh
Confidence 4688999998 3467999999999999999999999999999999999999885 8999999987432 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||.||+.+...... . + .+.+.++++.++|.+..++.+ ..|||||||||+||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALAR 140 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHH
Confidence 568999999989988999999988754321 1 1 245788999999987777654 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .-.|++++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc---cccceEEee
Confidence 999999999999999999999999999999999878999999999974 335677664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=322.53 Aligned_cols=197 Identities=28% Similarity=0.369 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|+++|.+... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHh
Confidence 589999999983 467999999999999999999999999999999999999885 8999999987432 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+..... ... .+.+.++++.+||.+..++.+ +.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHH
Confidence 6899999988888899999998865432 111 234788999999987666544 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.. |+++.+..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999999999999999999999999999887899999999996 45554 88877743
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=315.87 Aligned_cols=170 Identities=38% Similarity=0.525 Sum_probs=153.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHH
Confidence 46899999883 367999999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.+. ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~ 110 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVA 110 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHH
Confidence 135799999999999889999987542 8999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.++||++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999887 89999999995 67888999999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=319.21 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=194.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
++++|++++| +.+.+|+++|+++++|.+++|+|||||||||||.+++.+++.+ +|+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHH
Confidence 6789999999 5789999999999999999999999999999999999999886 99999999985321
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++.+-|+..+...+||+|-+.|+..-+ ..+....+.+..+++.++.++|++..|+.+ .+||||||||..||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhh
Confidence 256788999998889999999999985332 223344566788999999999999988855 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+.|+++.+.++||||.++||-..+.++++.|++++++ |+|||++.||. +.+..++|+|+-|++|+++..|++++++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999986 99999999996 68889999999999999999999999763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=363.64 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.+ ..+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHH
Confidence 59999999764 13899999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEcCC---CCCCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 010936 126 -SFGTAAYVTQD---DNLIGTLTVRETISYSARLR---LPD--K-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG 194 (497)
Q Consensus 126 -~~~~i~yv~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 194 (497)
..+.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+||. +..++.+ .+
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TE 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----cc
Confidence 12468999998 46888999999998764321 000 0 11223335678899999996 6677755 47
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+ .++..+||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 6889999999999999999
Q ss_pred EEeCc
Q 010936 275 YFGET 279 (497)
Q Consensus 275 ~~G~~ 279 (497)
+.++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88765
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=325.17 Aligned_cols=207 Identities=25% Similarity=0.376 Sum_probs=169.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.+.. ..+.+|+|+||++++|++++|+||||||||||+++|+|..+|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 3789999999842 2357999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++ .||+||+.+... .. ...+.+.++.+++.+..+ +..+ ..+..||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G 143 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVG 143 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHH
Confidence 2356999999998776 599999965321 11 123455566666654332 2222 256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999864 68999999996 4565 599999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=396.52 Aligned_cols=221 Identities=28% Similarity=0.391 Sum_probs=195.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|.. +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHH
Confidence 46999999999942 2467999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.+||+||++.+++.+||+||+.+.+.++ +.+..+.+++++++++.+||.+..++.+ ++|||||||||+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSV 1072 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHH
Confidence 2356999999999999999999999987654 2334455667899999999988877755 4799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
|+||+.+|+++||||||+|||+.++..++++|++++ +|+|||++||++ +++..+||||++|++|+++..|+++++...
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999995 589999999995 688899999999999999999999988764
Q ss_pred H
Q 010936 286 F 286 (497)
Q Consensus 286 f 286 (497)
|
T Consensus 1151 ~ 1151 (2272)
T TIGR01257 1151 F 1151 (2272)
T ss_pred c
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=302.19 Aligned_cols=215 Identities=27% Similarity=0.366 Sum_probs=191.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----- 124 (497)
+.|+++|+++.| +..++|.||+++.+.||.+.++||||||||||++.|.=+..|. +|+..+.|....
T Consensus 1 msirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 1 MSIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCc
Confidence 358899999999 5678999999999999999999999999999999999887775 999999886421
Q ss_pred ------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 125 ------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
..++.+|+|+|+-.++|.|||.||+.-+.. +. .++++.+.+.++.++|+.+.|.+.+|+ +|-.||||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsgg 145 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGG 145 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceecccc
Confidence 113568999999999999999999976532 21 256788888999999999999999887 55679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+|||+|||||+.+|.+|++||||++|||+-..+++++|++|+..|.|-+++||.. +...+.+.+|+.|.+|+|++.|+
T Consensus 146 qqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred hhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecc
Confidence 99999999999999999999999999999999999999999999999999999995 67788999999999999999998
Q ss_pred ch
Q 010936 279 TS 280 (497)
Q Consensus 279 ~~ 280 (497)
.+
T Consensus 225 a~ 226 (242)
T COG4161 225 AS 226 (242)
T ss_pred hh
Confidence 75
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=313.83 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=153.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHH
Confidence 48899998875 899999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 -~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++ .+++.+|++||+.+... |||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~q 111 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQ 111 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHH
Confidence 135699999984 57888999999876421 8999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|++||+||+.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++ +++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999977789999999995 678999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=360.90 Aligned_cols=208 Identities=23% Similarity=0.249 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. .+.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHH
Confidence 489999999993 356999999999999999999999999999999999999885 8999999875421
Q ss_pred CcCcEEEEcCCCCC--C-C-----CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 SFGTAAYVTQDDNL--I-G-----TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l--~-~-----~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..+.++|++|++.+ + + .+||+|++.+. ....++++++++.+||.+..++.+ .+|||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 138 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLST 138 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCH
Confidence 12358999998643 1 1 46888877532 112356888999999987777755 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ ..+.++||++++|++|+++..|
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987899999999996 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 218 ~~~~~~ 223 (490)
T PRK10938 218 EREEIL 223 (490)
T ss_pred CHHHHh
Confidence 987653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=367.95 Aligned_cols=220 Identities=31% Similarity=0.408 Sum_probs=174.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.++...... .+ . .. .. ......++++|+++.|+ +++++|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~---~----~~--~~-~~~~~~I~~~~vsf~Y~----~~~~vL~~isl~i~~ 360 (529)
T TIGR02868 299 RVRAAAERIEEVTGAKGPRPEGV----VP---A----AG--AL-GLGKPTLELRDLSFGYP----GSPPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCC----CC---C----Cc--cc-CCCCceEEEEEEEEecC----CCCceeecceEEEcC
Confidence 57889999999998665432100 00 0 00 00 01123599999999994 234699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (497)
||.+||+||||||||||+++|+|+++|+ +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~--- 433 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP--- 433 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC---
Confidence 9999999999999999999999999996 9999999988542 23579999999999987 99999998732
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 158 PDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.++
T Consensus 434 --~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 434 --DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred --CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1222 234455555444 4667999997 5677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
..+.+.|+++. +++|+|+++|++
T Consensus 507 ~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999864 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=327.50 Aligned_cols=211 Identities=28% Similarity=0.413 Sum_probs=169.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
.-.++++|+++.|..+ ..+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 9 ~~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 9 KGIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEH 83 (226)
T ss_pred CceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCH
Confidence 3458999999999421 1246999999999999999999999999999999999999885 8999999986421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ .||+||+.++.................+.++++.+ |+.+..++ ++..|||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~q 157 (226)
T cd03248 84 KYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQ 157 (226)
T ss_pred HHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHH
Confidence 1356999999998886 59999998754311000000011112356778888 77655555 34679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||++ .++. .||++++|++|++
T Consensus 158 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999865 68999999996 4664 5999999999864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=317.43 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=165.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|++... ..
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHH
Confidence 78999999983 467999999999999999999999999999999999999886 9999999986532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|+..+++.+||+||+.+..... .. ...+.++++.+++.+..++.+ ..|||||+||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLR 140 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHH
Confidence 56999999999988999999999864221 11 245788999999987666654 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ....||...
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999999999999999999998777999999999963 456677654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=359.49 Aligned_cols=221 Identities=22% Similarity=0.350 Sum_probs=183.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|..+ +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 369999999877311 1346999999999999999999999999999999999999851 28999999987531
Q ss_pred --CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCH
Q 010936 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|+. .+++.+||+||+.++...... ........++.++++++.++|.+ ..++.+ ..|||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 406 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSG 406 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCH
Confidence 134689999995 588999999999886321110 01222334566889999999964 456654 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 6899999999999999999877
Q ss_pred Cch
Q 010936 278 ETS 280 (497)
Q Consensus 278 ~~~ 280 (497)
+.+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=347.91 Aligned_cols=212 Identities=21% Similarity=0.286 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.++++||++.+..+ ..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------- 88 (549)
T ss_pred eeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-------
Confidence 58899999887421 2356999999999999999999999999999999999999885 89999999752
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
++.+...+++.+||+||+.+..... ..+..+..+.+.++++.++|.+..++.+ +.|||||||||+|||||+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 2233445677789999998864332 2234444566788999999987777654 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987799999999996 67889999999999999999999888764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=327.60 Aligned_cols=193 Identities=29% Similarity=0.420 Sum_probs=173.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec---------CCCcCcEEEEcCCCCCCCCCC
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---------KLSFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~---------~~~~~~i~yv~Q~~~l~~~lT 144 (497)
+++|+.+.-.++||.|+||||||||+|+|+|+.+|+ +|.|.+||.-. ...++++||||||..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888876799999999999999999999999997 99999999742 123578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsg 224 (497)
|+.||.|+.... .....+++...+|+.|..++ +|..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985431 23457888999999999887 6678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 225 LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||-....+++-+|.+|+++ +..|+.+||.+ +|+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999986 89999999995 79999999999999999999999998754
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=330.07 Aligned_cols=227 Identities=32% Similarity=0.427 Sum_probs=200.4
Q ss_pred ceeEEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 48 VSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
.++.++.+|+++.|+.+.+ ....++++||+++++||.+||+|+||||||||=.+|.+++++ +|+|.|+|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCc
Confidence 4567999999999987532 235689999999999999999999999999999999999987 699999999
Q ss_pred ecCC--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 010936 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (497)
Q Consensus 122 ~~~~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (497)
++.. .++++-.||||| .+.|.|||.+-+.-++....+ ..+.+++.+++.++|+.+||+... .+.|
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RY 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRY 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcC
Confidence 8531 135688999997 588999999999999877643 567888999999999999997532 2348
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.++ |.+-+++|||. .-+..+||+|++|++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~ 502 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRD 502 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeC
Confidence 9999999999999999999999999999999999999999999999999875 99999999995 688999999999999
Q ss_pred CeEEEEeCchhHHH
Q 010936 271 GKTVYFGETSAAFE 284 (497)
Q Consensus 271 G~iv~~G~~~~~~~ 284 (497)
|+||++|+.+++++
T Consensus 503 GkiVE~G~~~~if~ 516 (534)
T COG4172 503 GKIVEQGPTEAVFA 516 (534)
T ss_pred CEEeeeCCHHHHhc
Confidence 99999999988754
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=309.85 Aligned_cols=168 Identities=33% Similarity=0.515 Sum_probs=149.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+++|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHH
Confidence 468999998842 1256999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++. ||+||+ ||||||||++||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHH
Confidence 3569999999988875 999886 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ ..+ ..||++++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999987799999999996 455 68999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=327.23 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=169.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. ..+.+|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 19 ~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 19 EIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHT 92 (257)
T ss_pred eEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHH
Confidence 4899999999942 1257999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++. |++||+..... ... ..+.++++.+++.+ ..++.++. .+..||||
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~G 160 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECK------CTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSVG 160 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCC------CCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCHH
Confidence 13569999999988875 99999854210 111 11222333333322 12233322 45689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++ ..+.. ||++++|++|+++..|+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~-~~~~~-~dri~~l~~G~i~~~g~ 237 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV-STILD-ADLVLVLSRGILVECDT 237 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-HHHHh-CCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999874 489999999997 45554 99999999999999998
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 238 ~~~~~ 242 (257)
T cd03288 238 PENLL 242 (257)
T ss_pred HHHHH
Confidence 87654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=314.07 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=150.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------CcCcEEEEcCCCC--
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------SFGTAAYVTQDDN-- 138 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~-- 138 (497)
++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356999999999999999999999999999999999999885 9999999987521 1246899999973
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 010936 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (497)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllL 218 (497)
++ .+||+||+.+..... .....+..+++.++++.+||.+..++.+ ..||||||||++|||||+.+|+++||
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 469999999875432 2233444567889999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
||||+|||+.++..+.+.|++++++|+|||++||++
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 999999999999999999999987899999999996
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=321.38 Aligned_cols=197 Identities=27% Similarity=0.446 Sum_probs=165.0
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCC--CCCCHHHHHHHHhh
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSAR 154 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~ 154 (497)
|++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++.....+.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468999999999999999999999999999886 8999999987543345799999998764 34799999987632
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 010936 155 LRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (497)
Q Consensus 155 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i 233 (497)
.... ...........+.++++.+++.+..++.+ .+|||||||||+|||+|+.+|+++||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00111233456888999999987766654 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 234 ~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+.|++++++|.|+|++||++ .++.++||++++| +|++++.|+.+++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999987799999999996 5788999999999 89999999887653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=310.80 Aligned_cols=174 Identities=30% Similarity=0.439 Sum_probs=152.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHH
Confidence 468899999842 1236999999999999999999999999999999999999885 8999999986421 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++ .|++||+ +..||||||||++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHHHH
Confidence 56999999998886 5999886 2369999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+.+|++|||||||+|||+.++..+++.|+++. ++.|||++||++ .++ ..||++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999985 489999999996 455 479999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=315.30 Aligned_cols=197 Identities=22% Similarity=0.361 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHH
Confidence 4899999999842 1246999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +. .+..|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHH
Confidence 13569999999988875 9999997531 1111 12333333 2 22 456899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||+|+.+|+++||||||+|||+.++..+++.|+++. +|.|+|++||++ .++.. ||++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~-~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRL-RTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 489999999996 45654 999999999999887753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=393.78 Aligned_cols=249 Identities=19% Similarity=0.266 Sum_probs=198.5
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|.+||.++.+.+++...... +..+ ...| +..-.|+++|+++.|.. +.+++|+|+||+|++
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~~-~~~~--~~~~----------p~~g~I~f~nVsf~Y~~---~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAIIE-NNRP--VSGW----------PSRGSIKFEDVHLRYRP---GLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHhcCCcccccccc-CCCC--CCCC----------CCCCcEEEEEEEEEECC---CCCcccccceEEEcC
Confidence 457889999999976655321100 0000 0001 11225999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|+. |++|||.++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~--- 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS--- 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 9999997642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1335 ---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1335 ---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 1222 234455555544 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|++.. +++|+|+++|++ +.+ ..||+|++|++|++++.|+++++..
T Consensus 1407 e~~Iq~~L~~~~-~~~TvI~IAHRl-~ti-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1407 DSLIQRTIREEF-KSCTMLVIAHRL-NTI-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999874 479999999996 344 5599999999999999999998753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=356.27 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 588888873 2699999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
.++.++||+|++ .+++.+||.||+.+....... ......+.++.++++++.+||. +..++.+ ..|||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 398 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSG 398 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCH
Confidence 124699999996 578889999999875321100 0122233446688999999995 5666655 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999987899999999996 6889999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87764
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=361.70 Aligned_cols=229 Identities=30% Similarity=0.420 Sum_probs=182.5
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++++|+.++++.++.... . . ... ......++++|+++.|+. ..+++|+|+|+++++
T Consensus 289 ~~~~~~~ri~~ll~~~~~~~~-------~-~------~~~----~~~~~~i~~~~v~f~y~~---~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 289 DGVAAAEALFAVLDAPRPLAG-------K-A------PVT----AAPAPSLEFSGLSVAYPG---RRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHhCCCcccCC-------C-c------CCC----CCCCCeEEEEEEEEECCC---CCcccccceeEEECC
Confidence 578899999999974322110 0 0 000 001125999999999952 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC--
Confidence 9999999999999999999999999996 8999999998532 24579999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..++ +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 422 ---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 ---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1122 234455555554 3457888886 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+..+.+.|+++. +++|+|++||++ + ..+.||+|++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~-~-~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRL-A-LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCH-H-HHHhCCEEEeC
Confidence 999999999875 579999999996 3 45789999886
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=357.25 Aligned_cols=214 Identities=21% Similarity=0.311 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.++++|+++ +.+++|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHH
Confidence 578888863 24899999999999999999999999999999999999885 89999999875321
Q ss_pred --cCcEEEEcCCC---CCCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRL-PDK--MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 127 --~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
++.++|++|++ .+++.+||.||+.++..... ... ......++.+.++++.+++. +..++.++ .|||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 399 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSG 399 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCH
Confidence 24689999996 48888999999987542110 001 11223345688899999994 56777554 6999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||++|+.+|+||||||||+|||+.++..++++|++++++|.|||++|||+ .++.++||++++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999995 6899999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 87653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=393.32 Aligned_cols=249 Identities=21% Similarity=0.273 Sum_probs=198.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|.+|+.++.+.+++......+ ..+ ...| +....|+++|+++.|.. +.+++|+||||+|++
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~-~~~--~~~w----------p~~g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIEN-NRP--PPGW----------PSSGSIKFEDVVLRYRP---ELPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccC-CCC--CCCC----------CCCCcEEEEEEEEEeCC---CCCceecceeEEEcC
Confidence 4568899999999765543211000 000 0011 11235999999999942 234799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|.. |++|||.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 9999999999999999999999999986 8999999998642 24679999999999988 9999997652
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ +...|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1338 ---~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1338 ---EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 1122 234445554443 4568999986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|++.. +++|+|+++|+++ .+ ..||+|++|++|++++.|++++++.
T Consensus 1410 e~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1410 DALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999874 4799999999964 44 5599999999999999999999863
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=338.90 Aligned_cols=214 Identities=29% Similarity=0.349 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.++++++++.| +...+++||||+|++||++||+|+||||||||+++|.|.++|+ +|+|.++|++....
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHH
Confidence 58999999999 4688999999999999999999999999999999999999997 99999999975321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
+..||+|+|...|+|++||.||+.++..-......+.+..+++++++.+..||+-..|.+|+ +||-||||||.
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVE 150 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVE 150 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHH
Confidence 24689999999999999999999998654222234567778889999999999888888776 59999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||-. .|+.++|||+.+|+.|+++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999995 79999999999999999876655
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=315.34 Aligned_cols=196 Identities=28% Similarity=0.388 Sum_probs=155.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++++||++.|..+....+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------EEE
Confidence 4689999998421000136999999999999999999999999999999999999886 99999998 589
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHH
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
|++|++.+++ .|++||+.+.... ... ...+.++.+++.+ ..++.+. ..+..||||||||++
T Consensus 70 ~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~ 137 (204)
T cd03250 70 YVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRIS 137 (204)
T ss_pred EEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHH
Confidence 9999998885 5999999885321 111 1222333333321 1222232 246789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|.|||++||++ ..+.. ||++++|++|+
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999998 4666666689999999996 45665 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=344.21 Aligned_cols=249 Identities=25% Similarity=0.354 Sum_probs=200.9
Q ss_pred hHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEE
Q 010936 6 ASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLT 85 (497)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 85 (497)
-.+|+++++.++|+.-+.+ .+.+-....-.++|+|+++.|. +++++|+||||++.||+.+
T Consensus 508 DmEnmfdllkee~eVvd~P----------------~a~pl~~~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLP----------------GAPPLKVTQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHhhcCchhhcCC----------------CCCCccccCCeEEEEEeEEecC----CCCceeecceEEecCCcEE
Confidence 4688999999888764311 1111122344699999999995 5689999999999999999
Q ss_pred EEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 86 aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
||+||||+||||+|++|..+.+.. +|.|.+||++++. .++.||.||||..+|.+ |+..|+.|+..-..++.
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~Asnee 643 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEE 643 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHH
Confidence 999999999999999999998875 9999999998642 24679999999999987 99999999743221111
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
...+.+.+.+.+- .+++++.++|+||+. .-.|||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.++
T Consensus 644 vyaAAkAA~IHdr--Il~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 644 VYAAAKAAQIHDR--ILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred HHHHHHHhhHHHH--HhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 1111122222222 268899999999984 4459999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 241 ~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+. ++|.|++.|..+ . .--+|.|+++++|+|++.|..+|++.
T Consensus 721 ca-~RTtIVvAHRLS-T-ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 721 CA-NRTTIVVAHRLS-T-IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred hc-CCceEEEeeeeh-h-eecccEEEEEeCCeEeecCcHHHHHh
Confidence 87 689999999975 3 34699999999999999999988754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=353.87 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|++. .+|+||||++++|++++|+|||||||||||++|+|+.+|. +|+|.++|.++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHH
Confidence 588899872 1599999999999999999999999999999999999886 89999999875321
Q ss_pred --cCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHH
Q 010936 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 127 --~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 200 (497)
++.++|++|++ .+++.+||.||+.................++.++++++.+||. +..++.+ ..||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~k 409 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQ 409 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHH
Confidence 24689999984 5888899999986431110010011222345688999999997 6667655 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+||++|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|+++..|+++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999999996 6899999999999999999988776
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 489 ~~ 490 (510)
T PRK15439 489 AI 490 (510)
T ss_pred cC
Confidence 53
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=333.56 Aligned_cols=185 Identities=30% Similarity=0.516 Sum_probs=163.4
Q ss_pred EECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 010936 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (497)
Q Consensus 87 IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 163 (497)
|+|||||||||||++|+|+++|+ +|+|.++|++... ..+.++|++|++.+++.+||+||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999886 9999999987532 2357999999999999999999999986532 2334
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 010936 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (497)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (497)
.+.+++++++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 44556788999999998877764 4579999999999999999999999999999999999999999999999775
Q ss_pred -CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 244 -g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999996 6889999999999999999999998864
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=308.89 Aligned_cols=174 Identities=38% Similarity=0.561 Sum_probs=149.7
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----c
Q 010936 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----F 127 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~ 127 (497)
+++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHH
Confidence 4688999883 357999999999999999999999999999999999999886 99999999875321 1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++| +++.+||.+..++. +..||||||||++|||
T Consensus 73 ~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lar 110 (180)
T cd03214 73 RKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLAR 110 (180)
T ss_pred HHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 23566665 56667776655553 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.++||++++|++|++++.|
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999776 89999999996 5778999999999999987653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=304.54 Aligned_cols=231 Identities=27% Similarity=0.392 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 50 ARLTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
+.|+++||++++. + +.||++||++|++||+.+|+||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~-----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVE-----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEec-----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCH
Confidence 3689999999993 4 5899999999999999999999999999999999998543 3469999999998532
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 201 (497)
.+..+...+|.|.=+|..|+.+.|..+............+....+++.++.+++.+ .+++.+.. ++||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHH
Confidence 23457889999999999999999998876543221112355677888999999987 67777764 89999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC--CeEEEeeCCeEEEEeCc
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~--D~v~~L~~G~iv~~G~~ 279 (497)
|..|+..++.+|++.+||||-||||..+-..|.+.+..++..|.+++++||.. .+.++. |+|.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999999993 688887 99999999999999999
Q ss_pred hhHHHHHHhcCCCC
Q 010936 280 SAAFEFFAQAGFPC 293 (497)
Q Consensus 280 ~~~~~~f~~~g~~~ 293 (497)
++...++..||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8888888888754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=388.52 Aligned_cols=249 Identities=20% Similarity=0.252 Sum_probs=198.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|.+|+.++.+.+++..... ++ ...+..| +....|+++|++++|+. +...+|+||||+|++
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~~~-~~--~~~~~~w----------p~~g~I~f~nVsf~Y~~---~~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPWQI-QE--TAPPSGW----------PPRGRVEFRNYCLRYRE---DLDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccccc-cC--CCCCCCC----------CCCCcEEEEEEEEEeCC---CCcccccceeEEEcC
Confidence 46789999999997665422100 00 0000011 11235999999999953 224699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|+. |++|||....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 9999999999999999999999999986 8999999998642 24679999999999998 9999996321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1385 ---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1385 ---QYSD----EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1222 234555665554 3567999986 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|++++++.
T Consensus 1457 e~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1457 DNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 4799999999963 456699999999999999999998764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=385.38 Aligned_cols=244 Identities=26% Similarity=0.402 Sum_probs=190.0
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|.+|++||.++++.+|..+. ... . .. .. .. ..|+++||++.|+.+ ..+++|+|+||++++
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~-~~~---~-------~~----~~-~~-~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVEN-NDD---G-------KK----LK-DI-KKIQFKNVRFHYDTR--KDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-CCC---C-------cc----CC-CC-CcEEEEEEEEEcCCC--CCCceeccceEEEcC
Confidence 588999999999987776431 000 0 00 00 01 159999999999521 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEEC-CEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~-G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
|+++||+||||||||||+++|+|+++|. +|+|+++ |.++.. .++.++||+|++.+|+. ||+||+.++...
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCC
Confidence 9999999999999999999999999996 9999995 565421 23579999999999985 999999997421
Q ss_pred cC----------CC--------C-------------------------C-----CHHHHHHHHHHHHHHcCC-------C
Q 010936 156 RL----------PD--------K-------------------------M-----PWSEKRTLVERTIIEMGL-------Q 180 (497)
Q Consensus 156 ~~----------~~--------~-------------------------~-----~~~~~~~~v~~~l~~lgL-------~ 180 (497)
.. +. . + .....++.+.++++.+++ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 00 00 0 0 000112345666666654 4
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHH
Q 010936 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVF 259 (497)
Q Consensus 181 ~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~ 259 (497)
+..||.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++.+ +|+|+|+++|+++ .+
T Consensus 567 ~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i- 643 (1466)
T PTZ00265 567 DKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI- 643 (1466)
T ss_pred cccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-
Confidence 556888886 5788999999999999999999999999999999999999999999999976 5899999999963 44
Q ss_pred hcCCeEEEeeCC
Q 010936 260 ELFDRLYLLSGG 271 (497)
Q Consensus 260 ~~~D~v~~L~~G 271 (497)
+.||+|++|++|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 789999999986
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=352.23 Aligned_cols=232 Identities=22% Similarity=0.221 Sum_probs=183.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.++..+. . + ... .. ....++++|+++.|+ +.+++|+|+|+++++
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~-~-----~--------~~~--~~--~~~~i~~~~v~f~y~----~~~~~l~~i~~~i~~ 348 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF-P-----R--------PQA--FP--DWQTLELRNVTFAYQ----DNGFSVGPINLTIKR 348 (547)
T ss_pred HHHHHHHHHHHHhcccccccc-c-----c--------ccc--cC--cCceEEEEEEEEEeC----CCCeEEecceEEEcC
Confidence 577899999998754322110 0 0 000 00 112599999999995 234699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|| .
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---- 417 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---- 417 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----
Confidence 9999999999999999999999999986 9999999998542 23679999999998886 88877 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
+ . ..++.+.++++.+++.+..+. ++. ....||||||||++|||||+++|++|+||||||+||+.++..+.
T Consensus 418 -~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 -K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred -C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 1 123457788888888754332 211 13579999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 235 QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 235 ~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
+.|.++.+ .|+|+|+++|++ +....||+|++|++|++++.
T Consensus 490 ~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99987654 589999999996 35778999999999999876
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=297.40 Aligned_cols=156 Identities=36% Similarity=0.500 Sum_probs=140.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 46899999993 457999999999999999999999999999999999999886 8999999986431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++| ||||||||++|
T Consensus 73 ~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~l 93 (163)
T cd03216 73 RRAGIAMVYQ-----------------------------------------------------------LSVGERQMVEI 93 (163)
T ss_pred HhcCeEEEEe-----------------------------------------------------------cCHHHHHHHHH
Confidence 1234677776 89999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||||+.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++ .++.++||++++|++|++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987799999999995 57888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=319.02 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=163.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|+++|+++. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------
Confidence 345899999984 246999999999999999999999999999999999999886 89999988
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerq 201 (497)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.++. .+..|||||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~q 166 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRA 166 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHH
Confidence 38999999988875 999999875321 11 11223333334322 12333332 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.+ +.+. ++.|||++||++ ..+ ..||++++|++|++++.|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~-~~~-~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999865 5554 479999999996 455 689999999999999999987
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 244 ~~~ 246 (282)
T cd03291 244 ELQ 246 (282)
T ss_pred HHH
Confidence 754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=311.28 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=158.6
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------
Q 010936 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------- 125 (497)
.+.|+++.+. ..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWG----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 4667888874 2367999999999999999999999999999999999999885 8999999986421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGIS 196 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 196 (497)
.++.++|++|++.++ ..|++||+.+.... .. ....++++.++|.+.. ++..+ .++..||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS 142 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLS 142 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCC
Confidence 124689999999887 46999999875321 11 1233445555554322 22222 2467899
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|||||||+||++|+.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|++||++ ..+ ..||++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 6666666689999999996 455 5799999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=300.90 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=146.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ....+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHH
Confidence 468899998831 1136999999999999999999999999999999999999885 8999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++ .|+.||+ |||||||||+||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHH
Confidence 346899999998776 5998886 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++||++ .++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999864 79999999996 56666 99999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=382.58 Aligned_cols=214 Identities=21% Similarity=0.277 Sum_probs=182.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
-.|+++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 35999999999952 2346999999999999999999999999999999999999986 8999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSg 197 (497)
.++.++||||++.+|+. ||+|||.... ..+. +.+.++++..+|. +..|+.+|+ ....|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 24679999999999987 9999996421 1222 3456666666653 457899986 6678999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~-p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
|||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|++ .....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEE
Confidence 999999999999995 89999999999999999999999998864 479999999996 35677999999999999999
Q ss_pred eCchhHHH
Q 010936 277 GETSAAFE 284 (497)
Q Consensus 277 G~~~~~~~ 284 (497)
|++++++.
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99998753
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=348.28 Aligned_cols=209 Identities=22% Similarity=0.333 Sum_probs=175.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++|+++.| +++++|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 3467999999999999999999999999999999999999886 899999873 3589
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhh-c-----------cCCC-C----------------CCHHHHHHHHHHHHHHcCCCcc
Q 010936 132 YVTQDDNLIGTLTVRETISYSAR-L-----------RLPD-K----------------MPWSEKRTLVERTIIEMGLQDC 182 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-~-----------~~~~-~----------------~~~~~~~~~v~~~l~~lgL~~~ 182 (497)
|++|++.+++.+||+|++.++.. . ..+. . ....+.+.++.++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999987531 0 0000 0 0001223568889999999754
Q ss_pred c-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc
Q 010936 183 A-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (497)
Q Consensus 183 ~-~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~ 261 (497)
. +. .+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++ ..+.++
T Consensus 148 ~~~~-----~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~ 218 (530)
T PRK15064 148 QHYG-----LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSV 218 (530)
T ss_pred HhcC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhh
Confidence 3 33 3457999999999999999999999999999999999999999999863 589999999995 678899
Q ss_pred CCeEEEeeCCeE-EEEeCchhHH
Q 010936 262 FDRLYLLSGGKT-VYFGETSAAF 283 (497)
Q Consensus 262 ~D~v~~L~~G~i-v~~G~~~~~~ 283 (497)
||+|++|++|++ ++.|++++..
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHH
Confidence 999999999999 4789887654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=297.92 Aligned_cols=163 Identities=33% Similarity=0.488 Sum_probs=144.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++|+++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATP----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcC----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceEE
Confidence 46889999883 2356999999999999999999999999999999999999885 899999873 5689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|++.++ .+||+||+.+. .+..||||||||++|||||+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 999998765 56999998652 124699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++ . ....||++++|++|
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~-~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP-S-LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh-h-HHhhCCEEEEEcCC
Confidence 99999999999999999999999999886 58999999996 3 45799999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=348.86 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=175.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++||++.|. .++++|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3699999999992 1467999999999999999999999999999999999999885 899999752 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhc-c------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMP--------------------WSEKRTLVERTIIE 176 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l~~ 176 (497)
++||+|++.+++.+||.||+.++... . ...... ..+...++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 99999999999999999999875320 0 000000 00123567888999
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
+||.. .++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++ .
T Consensus 152 ~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99953 55544 5799999999999999999999999999999999999999999998872 5999999996 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEeCchhH
Q 010936 257 EVFELFDRLYLLSGGKTV-YFGETSAA 282 (497)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~ 282 (497)
.+..+||+|++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 888999999999999986 77887654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=350.86 Aligned_cols=219 Identities=26% Similarity=0.353 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|..+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHH
Confidence 589999999994211 1356999999999999999999999999999999999999886 8999999987532
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.. ..|||||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~q 151 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQ 151 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHH
Confidence 1356999999999999999999999865432 2234455667889999999988777654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++ +. .+.||++++|++|++++.|+.++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~-~~-~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP-QV-AAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH-HH-HHhCCEEEEEECCEEEeecCccc
Confidence 99999999999999999999999999999999999999987799999999996 44 46799999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
..
T Consensus 230 ~~ 231 (648)
T PRK10535 230 KV 231 (648)
T ss_pred cc
Confidence 64
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=303.38 Aligned_cols=190 Identities=22% Similarity=0.293 Sum_probs=159.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i 130 (497)
++++|+++.|. .+.+++ +||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhE
Confidence 78999999983 344555 99999999999999999999999999999999886 9999999987532 12458
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||.||+.+..... . ..+.+.++++.+++.+..++.+ +.||||||||++|||||+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998865332 1 1245678889999987666644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.+|++++|||||+|||+.++..+.+.|+++.++|.|+|++||++. .+ ..+|-|
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 999999999999999999999999999877667899999999963 33 346654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=308.59 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=161.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEE-ECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-LNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~-~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
++|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|. ++|... .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999886 89997 777532 13345678899999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
+.+....+ .....+. .+.+.+.++|+...++.+ +.||||||||++||+||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1222222 223445567877777655 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHh
Q 010936 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (497)
++..+.+.|.+..+ ++|+|++||++ .++..+||++++|++|++++.|+.+++..+++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866544 46899999996 578889999999999999999999988776654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=344.10 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=176.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..|+++|+++.+ +.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++...
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 368999999863 35899999999999999999999999999999999999886 89999999875321
Q ss_pred ---cCcEEEEcCCC---CCCCCCCHHHHHHHHh-hccCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 010936 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSA-RLRLP-DK-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGIS 196 (497)
Q Consensus 127 ---~~~i~yv~Q~~---~l~~~lTV~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 196 (497)
.+.++|++|++ .+++.+|+.+|..+.. ..... .. ......++.+.++++.+++. +..++. +.+||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 393 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLS 393 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 23489999985 4788898887743321 00000 01 12233446678899999995 445664 45799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||++ .++.++||++++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999995 688999999999999999987
Q ss_pred eCch
Q 010936 277 GETS 280 (497)
Q Consensus 277 G~~~ 280 (497)
++.+
T Consensus 473 ~~~~ 476 (491)
T PRK10982 473 VDTK 476 (491)
T ss_pred Eccc
Confidence 7553
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=378.71 Aligned_cols=212 Identities=25% Similarity=0.318 Sum_probs=182.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||+++|.. +.+.+|+||||+|++||.+||+|+||||||||+++|+|+++ . +|+|++||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 35999999999953 24679999999999999999999999999999999999986 3 8999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSg 197 (497)
.++.++||||++.+|+. ||+|||.... ..+ ++.+.++++.++|. +..|+.+|+ ....|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 24679999999999998 9999996431 112 24466677777663 467899986 5667999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 4799999999963 45569999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
++++++
T Consensus 1434 ~p~~Ll 1439 (1490)
T TIGR01271 1434 SIQKLL 1439 (1490)
T ss_pred CHHHHH
Confidence 998876
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=346.66 Aligned_cols=209 Identities=22% Similarity=0.264 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|+......+.+|+|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 359999999999531111246999999999999999999999999999999999999986 9999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-IGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-vg~~~~~~LSgGerqRv 203 (497)
.++.++||+|++.+|.. |+++|+. + ...++.+.++++.+++.+..+.. -|......||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 13568999999999876 8888831 1 11234577788888886543321 11112357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
+|||||+.+|++|||||||++||+.++..+.+.+. .+...|+|+|++||++. ..+.||+|++|++|++++.
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998664 45556899999999963 5678999999999999753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=309.17 Aligned_cols=191 Identities=29% Similarity=0.390 Sum_probs=167.5
Q ss_pred eEEEEEeEEEEEEccCC--cc--cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC
Q 010936 50 ARLTWKDLTVMVTLSNG--ET--HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~--~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 125 (497)
..++++||++.|..+.+ .. ..+++||||++++||+++|+|+||||||||-|+|.|+++|+ +|+|+++|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhh
Confidence 35899999999976421 11 47999999999999999999999999999999999999996 9999999987432
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.. ..+..+++.++|+.+||.. .++ .++++||||||||++
T Consensus 80 ~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~ 119 (268)
T COG4608 80 LS-----------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIG 119 (268)
T ss_pred cc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHH
Confidence 11 2345577999999999864 333 378999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|+++++|||+|+||...+.+++++|+++.++ |.|.++++||. +.+..+||||.+|..|++++.|+.+++.
T Consensus 120 IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 120 IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 999999999999999999999999999999999999875 99999999995 6889999999999999999999998875
Q ss_pred H
Q 010936 284 E 284 (497)
Q Consensus 284 ~ 284 (497)
.
T Consensus 199 ~ 199 (268)
T COG4608 199 S 199 (268)
T ss_pred h
Confidence 3
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=345.11 Aligned_cols=211 Identities=25% Similarity=0.306 Sum_probs=173.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..++++||++.|. +.+++|+|+||+|++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3689999999993 1467999999999999999999999999999999999999885 899999752 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhcc-------------CCCCCCH--------------------HHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLR-------------LPDKMPW--------------------SEKRTLVERTIIE 176 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~~~~--------------------~~~~~~v~~~l~~ 176 (497)
++||+|++.+++.+||.||+.++.... ....... .....++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 999999999999999999998753210 0000000 0012456677888
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
+|+.. .++. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++ .
T Consensus 150 ~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88853 4554 4579999999999999999999999999999999999999999999876 35999999995 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 257 EVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
.+..+||++++|++|+++ +.|+.++..
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 788999999999999976 778877644
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=344.77 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=173.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 369999999999 3467999999999999999999999999999999999999886 899999874 46
Q ss_pred EEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHH
Q 010936 130 AAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 130 i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++|++|++. +++.+||.|++.+... . . ..++++.++++.+|+. +..++.+ .+|||||||||+||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHH
Confidence 899999864 5667999999865311 1 1 1134578899999994 5566644 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++ ..+..+||++++|++|+++ +.|+++++.
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999999886 35999999995 6888999999999999998 778876643
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=311.38 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=157.0
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCH
Q 010936 71 VLEGLTGYAE-----PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 71 iL~~vs~~i~-----~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
.++|+++++. +||+++|+||||||||||+++|+|+++|. +|+|.++|. .++|++|+...++.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCCH
Confidence 5667777775 79999999999999999999999999886 899999984 58999999887778899
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
+|++.+...... . ......++++.++|.+..++.+ ..|||||||||+||++|+.+|+++||||||++|
T Consensus 79 ~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 79 RDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999976533210 0 1123577889999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE--EEeCchhH
Q 010936 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSAA 282 (497)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~~ 282 (497)
|+.++..+.+.|+++++ .|+|||++||++ ..+..+||++++|+++..+ ..+++.++
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999999999999976 489999999995 6788899999999765433 33444443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=316.66 Aligned_cols=227 Identities=27% Similarity=0.373 Sum_probs=198.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~---- 124 (497)
.++++||++.+.... +...++++|||++++||.+||+|+||||||-..+.++|+++.. ...+|+|.|+|.+.-
T Consensus 6 lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 589999999996543 4678999999999999999999999999999999999998652 345899999998731
Q ss_pred -----CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 -----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 -----~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.+-.+|+++||+| .+.|-.|+..-+.-...++ .+++.++.++++.++|+.+|+.+-.... +.||++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 1224799999997 4678889988887776654 3567788889999999999998765443 459999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||.||+||+++|++||.||||++||..-+.+|+++|++|.++ |..++++|||. .-+.+++|||++|.+|++++.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 9999999999999999999999999999999999999999999875 99999999995 688999999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+.++++
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9998876
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=341.87 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=172.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. .+|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 369999999999 3456999999999999999999999999999999999987541 28999999975321
Q ss_pred --CcCcEEEEcCCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIG--TLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++ ..++.+++.++... ....... ...+++++++++.+||.+ ..++.+ .+||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHH
Confidence 1246999999876543 35777776543211 0001111 223456889999999986 666654 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCChHHHh-cCCeEEEeeCCeEEEE
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH~~~~~i~~-~~D~v~~L~~G~iv~~ 276 (497)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ +||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998775 5799999996 56776 5999999999998765
Q ss_pred e
Q 010936 277 G 277 (497)
Q Consensus 277 G 277 (497)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=293.64 Aligned_cols=192 Identities=26% Similarity=0.449 Sum_probs=168.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCC
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIG 141 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~ 141 (497)
.+..+|+++||++.+||..+|.||||||||||+|+++.+++|+ +|.+++.|++... .+.+++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4578999999999999999999999999999999999999996 9999999998542 2457999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
. ||++|+.|....+... + .+.+..++|+++++.+. .++ .+..||||||||++|+|.|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr--~---dr~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR--P---DRAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccC--C---ChHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 9999999987765321 1 23557788999999764 343 455799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 221 PTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||+||+.+.+.|-++|.++. .+...++.+||++ ++..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999987 4689999999996 678899999999999876
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=308.11 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=181.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----cCcEEEEc-CCCCCCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVT-QDDNLIGTL 143 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~-Q~~~l~~~l 143 (497)
..+++||||+|++|++++++|||||||||+||+|+|++.|+ +|.|.++|..+... -+.+++|+ |...+...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 45899999999999999999999999999999999999996 99999999864321 14566654 446677778
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010936 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
.+.|.+......+ .++.++.+++.+.+.+.++|+...+.++ +.||-|||.|+.||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 8899888876665 5677888899999999999988777755 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
|||..++..|.+.|++..+ .+.||+.+||+. +.+..+||||++|+.|+++|.|+.+++.+-|
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999987 599999999995 6899999999999999999999999887654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=337.93 Aligned_cols=204 Identities=23% Similarity=0.308 Sum_probs=170.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.| +++.+|+||||+|++|++++|+||||||||||+++|+|+++|. +|+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+||++|+. .+++.+||.||+.+...... .... ...+.++++.+|+.+ ..++.+ .+|||||||||+||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 78889999999998753221 1111 123456899999964 456644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEE-EEeCchh
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETSA 281 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 281 (497)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ .++..+||++++|++ |++. +.|+.++
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999999999999999999999999872 4 899999995 688999999999985 7876 4565543
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=300.03 Aligned_cols=217 Identities=27% Similarity=0.367 Sum_probs=184.1
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--- 124 (497)
....|+++|+++.+ +++.||+|+|++|++||-.+|+|||||||||||++++|...|+ +|.+.+.|+...
T Consensus 28 ~~~li~l~~v~v~r-----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~ 99 (257)
T COG1119 28 NEPLIELKNVSVRR-----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGE 99 (257)
T ss_pred CcceEEecceEEEE-----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCc
Confidence 34569999999999 5789999999999999999999999999999999999999886 899999998632
Q ss_pred ---CCcCcEEEEcCC--CCCCCCCCHHHHHHHHhh--ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ---LSFGTAAYVTQD--DNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ---~~~~~i~yv~Q~--~~l~~~lTV~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..+++||||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|+.++ .||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCH
Confidence 224679999754 344566788887764432 1111112234556778899999999999998776 6999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||||||-|||||+.+|.+||||||++|||...+..+++.|.+++.. +.++|++||++ +++...+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999874 88999999996 78999999999999999999
Q ss_pred EeC
Q 010936 276 FGE 278 (497)
Q Consensus 276 ~G~ 278 (497)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=336.94 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=169.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..++++|+++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGF-----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 369999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
++|++|++ .+++.+||.||+.++.... ..... ...+.++++.+||.+ ..++.+ ..|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 4788899999999875321 11111 123557899999964 456544 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEE-EEeCch
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~ 280 (497)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ ..+..+||++++|++ |+++ +.|+.+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 9999999999999999999999999999999872 3 899999995 678899999999986 5776 445543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=368.82 Aligned_cols=237 Identities=24% Similarity=0.295 Sum_probs=187.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|.+||.++++.++.... . .+ . . . .....++++|+++.|+.. .++++|+|+|+++++
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~---~--~~---~-----~---~--~~~~~I~~~~vsF~y~~~--~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILA---Q--NP---P-----L---Q--PGAPAISIKNGYFSWDSK--TSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHcCcccccc---c--cC---C-----c---C--CCCCcEEEEeeEEEcCCC--CCCceeeeeEEEEcC
Confidence 578999999999976543211 0 00 0 0 0 011259999999999521 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|+.++|+||||||||||+++|+|.++|. +|.+. ..++.++||+|++.+|+. ||+|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~------ 705 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSDF------ 705 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCcc------
Confidence 9999999999999999999999999985 67553 123579999999999987 999999998421
Q ss_pred CHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 162 PWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
+. ++.+++++..+ |++..+|.||+ ....||||||||++||||+.++|+|+|||||||+||+.++..++
T Consensus 706 ~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 12 23444444444 45667899997 46679999999999999999999999999999999999999887
Q ss_pred HH-HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 235 QT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 235 ~~-L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+. ++.+ .+|+|+|++||++. ....||+|++|++|++++.|+.+++.
T Consensus 781 ~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 781 DSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 65 4443 35899999999963 56789999999999999999998875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=337.83 Aligned_cols=199 Identities=24% Similarity=0.289 Sum_probs=172.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..++++|+++.|. +. .|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~-----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLG-----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEEC-----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 4699999999882 22 599999999999999999999999999999999999886 8999986 15
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
++|++|+..+++.+||+|++.+..... .. ...+.++++.++|.+..++.+ .+|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHH
Confidence 899999988888999999998753211 11 134678999999987777755 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||+ .++..+||++++|+ |++...|...
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecC
Confidence 9999999999999999999999999999999874 89999999995 67889999999996 5777777643
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=287.74 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=191.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC-EecCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKL--- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G-~~~~~--- 125 (497)
..++++|+|+++ +...+|+|+||++.+||+-+|+|||||||||+|++|+|..+|. +|+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 468999999999 5688999999999999999999999999999999999999885 89999999 44321
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.+..||--||.|..|..+||+|||..+.....+- .....+.+.+++++|...||.+..|...+ .||-
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhcc
Confidence 2345788999999999999999999986532110 01123456789999999999999888765 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||++.|++-++++|++|+||||++|+--.......++|+.++. .++|+++.|| ...+.+++|+|-+|++|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc-HHHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999976 5899999999 47899999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 988763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=366.99 Aligned_cols=236 Identities=23% Similarity=0.301 Sum_probs=189.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++||.++++.++.... + .+ ... .....++++|+++.|+.. .++++|+|+|+++++
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~---~--~~--------~~~-----~~~~~I~~~nvsf~y~~~--~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLL---P--NP--------PLE-----PGLPAISIKNGYFSWDSK--AERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccc---c--CC--------ccc-----CCCCceEEEeeEEEccCC--CCCceeeceeEEecC
Confidence 578899999999975433211 0 00 000 001249999999999531 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCce-eEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~-G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
|++++|+||||||||||+++|+|.++|. + |+|.+. +.++||+|++.+++. ||+|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~----- 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF----- 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc-----
Confidence 9999999999999999999999999885 8 899864 468999999999986 999999997431
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i 233 (497)
+ +++.+++++..+| ++..+|.||+ ....|||||||||+||||+.++|+|+|||||||+||+.+...+
T Consensus 706 -d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 706 -D----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred -c----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 1 2334555555444 4567899997 4667999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 234 ~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+ .++.+. +|+|+|++||++ .....||+|++|++|++++.|+.+++.
T Consensus 780 ~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 780 FDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 75 555543 589999999996 357789999999999999999998875
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=342.51 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=161.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.++++|+++.++ +++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 599999999884 2357999999999999999999999999999999999999875 89998864 3569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CcccCCCCHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIA 206 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~IA 206 (497)
+||+|++.+++. |++||+.++........ ....++.+.++++.+++.+..++..| ...+..||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999998887 99999988643210000 00112456788999998765443221 013468999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|||+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.||++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999963 468899999997
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=337.78 Aligned_cols=202 Identities=27% Similarity=0.356 Sum_probs=171.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|.++|+ +|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y-----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGY-----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 469999999999 3467999999999999999999999999999999999999886 899999742 25
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 010936 130 AAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 130 i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
+||++|+. .+.+..|+.+++... . .......+.++|..+++.. ..++.+ ..|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHH
Confidence 89999974 355667888776421 1 1112356788999999963 566655 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 999999995 6888999999999999997 788887753
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=303.46 Aligned_cols=198 Identities=25% Similarity=0.319 Sum_probs=163.5
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecC
Q 010936 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTK 124 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~-----------~~G~~~~ 124 (497)
+++++|. ..+.+|+|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|+ ++|.+..
T Consensus 5 ~~~~~y~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYG----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred Ccceeec----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhh
Confidence 5677773 2236999999 59999999999999999999999999999986 99996 7787642
Q ss_pred C-----C--cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 L-----S--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ~-----~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
. . ...++|++|...+++. ++.+++.+... ....+..+.++++.+||.+..++.+ ..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 142 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNI-----DQLSG 142 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1 1 1237899999888874 88888876421 1223456788999999987666644 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+||++++|+ |++.+.|
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999999987789999999995 67888999999995 5565543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=274.42 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=132.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++++|+++.+. +..+|+++||++++||+++|+||||||||||+++|+|+++|. +|+|+++|. ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEEE
Confidence 46889999883 346999999999999999999999999999999999999885 999999985 3689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++| ||+||+||++|||||+.
T Consensus 67 ~~~~-----------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 67 YFEQ-----------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEcc-----------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 9998 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++ +++..+||++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999887 47999999995 67888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=334.35 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=170.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQI-----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEE-----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----cE
Confidence 469999999998 3467999999999999999999999999999999999999885 899998 432 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
++|++|+. .+++.+||.||+.+..... ... .....+.+++..+++. +..++.+ ..|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 89999985 5889999999998764211 011 1134577889999985 4566655 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee-CCeEEE-EeCchh
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 281 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~-~G~iv~-~G~~~~ 281 (497)
+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||++++|+ +|++.. .|+-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 45999999995 67889999999998 899865 455444
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=348.53 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=202.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..+..+|+++.|... +.+++++|+.|++||+.|++|+|||||||++|+|+|..+|+ +|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccch
Confidence 458899999999421 12999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.+||+||.+.+++.||.+|++.+.++++ +++..+.++.++.+++.++|.+.+|+.++ .+|||+|||+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkL 707 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRL 707 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhH
Confidence 3467999999999999999999999999987 56777788889999999999999999776 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++|.||+.+|++++|||||+|+||.+++.+++++.+++++|+.||++||. .+|...+|||+.+|.+|++...|+++++.
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 99999999999999999999999999999999999999988899999999 58999999999999999999999999998
Q ss_pred HHHH
Q 010936 284 EFFA 287 (497)
Q Consensus 284 ~~f~ 287 (497)
..|.
T Consensus 787 srfG 790 (885)
T KOG0059|consen 787 SRYG 790 (885)
T ss_pred hhcC
Confidence 7664
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=284.56 Aligned_cols=218 Identities=20% Similarity=0.244 Sum_probs=192.0
Q ss_pred EEEEEeEEEEEEcc-------------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 010936 51 RLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (497)
Q Consensus 51 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~ 111 (497)
.|+++||++.|+.. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 47788888877642 123457999999999999999999999999999999999999996
Q ss_pred ceeEEEECCEecCCCcCcEEEEcC-CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 010936 112 LSGTILLNGHKTKLSFGTAAYVTQ-DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (497)
Q Consensus 112 ~~G~I~~~G~~~~~~~~~i~yv~Q-~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (497)
+|+|.++|+-. ++.. ...+.|.+|.+||+.+...+. +++.++.+++++++++.-+|.+..|.+|
T Consensus 81 -~G~v~v~G~v~--------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 -SGKVKVTGKVA--------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred -CceEEEcceEe--------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 99999999632 1111 234557899999999987764 6778899999999999999999999876
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.+|.||+-|++.|.|...+|+|||+||-.+-.|+.=+....+.+.++.+++.|||++||++ ..+.++||++++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeC
Confidence 57999999999999999999999999999999999999999999999988889999999995 789999999999999
Q ss_pred CeEEEEeCchhHHHHHHh
Q 010936 271 GKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 271 G~iv~~G~~~~~~~~f~~ 288 (497)
|++.+.|+++++.+++..
T Consensus 223 G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CEEEEcCCHHHHHHHHHH
Confidence 999999999999987754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=333.30 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=165.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++||+++| +.+.+|+||||+|++|+++||+||||||||||||+|+|.++|+ +|+|.++|. ..++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 4577999999999999999999999999999999999998886 899999874 2478
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 010936 132 YVTQDDNLIGTLTVRETISYSAR-----------------------LRL-PDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 186 (497)
|++|+...+. .|+.+++.-... +.. .......+...++.++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 9998653332 466554432100 000 00000112345688899999996 456765
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 187 vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||+++
T Consensus 147 ~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 147 VS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred hh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEE
Confidence 54 69999999999999999999999999999999999999999998775 56999999995 68889999999
Q ss_pred EeeCCeEE-EEeCchhH
Q 010936 267 LLSGGKTV-YFGETSAA 282 (497)
Q Consensus 267 ~L~~G~iv-~~G~~~~~ 282 (497)
+|++|+++ |.|+.+..
T Consensus 218 ~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 218 HIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 99999996 56766543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=358.06 Aligned_cols=243 Identities=22% Similarity=0.312 Sum_probs=187.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|..|.+||.++++.++....... ... ........++++|+++.+.. ..+++|+|+|+++++
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~~-----------~~~----~~~~~~~~i~~~~~~~~~~~---~~~~~l~~isl~i~~ 663 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSIE-----------RRT----IKPGEGNSITVHNATFTWAR---DLPPTLNGITFSIPE 663 (1522)
T ss_pred HHHHHHHHHHHHHcCccccccccc-----------ccc----cCCCCCCcEEEEEeEEEcCC---CCCceeeeeEEEEcC
Confidence 578899999999975543211000 000 00001125999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|++++|+||||||||||+++|+|.++|. +|+|.++| .++||+|++.+++ .||+||+.|+...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------ 725 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------ 725 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------
Confidence 9999999999999999999999999885 89999987 4899999998876 5999999987421
Q ss_pred CHHHHHHHHH--HHHHHcCC-CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 010936 162 PWSEKRTLVE--RTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238 (497)
Q Consensus 162 ~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~ 238 (497)
..+..++.++ .+.+.+++ ++..+|.+|+ ++.+||||||||++||||++.+|++++||||||+||+.++..+.+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 1111111111 12233333 3455788886 577899999999999999999999999999999999999999999987
Q ss_pred HHH--hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 239 CLS--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 239 ~l~--~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+.. .+|+|+|++||++. . ...||+|++|++|+++..|+.+++.
T Consensus 805 ~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 805 GPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 542 35799999999963 4 4569999999999999999988875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=280.54 Aligned_cols=154 Identities=28% Similarity=0.431 Sum_probs=135.7
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEc
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~ 134 (497)
.|+++.| +++.+++++ +++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~-----~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRY-----GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEE-----CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEc
Confidence 5788888 346789885 999999999999999999999999999999986 8999999853 68888
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~ 214 (497)
|+.. ||||||||++|||+|+.+|+
T Consensus 68 q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 68 QYID--------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred ccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 7532 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE--eCchh
Q 010936 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYF--GETSA 281 (497)
Q Consensus 215 lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~ 281 (497)
+++|||||+|||+.++..+.+.|+++++++ .|||++||++ .++..+||++++|+++-.++. |.+..
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 999999999999999999999999997764 9999999995 678889999999998766554 55543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=283.13 Aligned_cols=216 Identities=26% Similarity=0.398 Sum_probs=178.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
+++.|+++.+..+....+++|+++|+++..|+++-|+|.||||||||+++|+|.+.|+ +|+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHH
Confidence 4566777777555555688999999999999999999999999999999999999996 99999999986421
Q ss_pred cCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
...++-|+|+| ..+|.||+.||+.++...-...+... ...++...+.++.+ ||++..++++| -|||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchH
Confidence 13467799997 46899999999999865321122222 22333344455554 66788888887 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||-|+++.|-++.|+||||||=|++|||.++..+++.-.++.++ +.|.+|+||.. ..+..+.+|.++|++|+||..
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999998764 78999999995 689999999999999999976
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=267.67 Aligned_cols=202 Identities=25% Similarity=0.335 Sum_probs=171.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~~~ 127 (497)
.++++|++... +....|-|+|++|.+||++-||||||||||||+..+.|.+.+.-..+|++++|+++.. ...
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47788998665 4678999999999999999999999999999999999999887678999999999754 345
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+++|.++|++.+||+++|.+|+.|+.. ..+....++..++..|++.||....+. .|.+||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHH
Confidence 789999999999999999999999853 334445667778999999999988776 45689999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+|+..|+.++||||+|.||..-+.+..+..-.- +..|..+|.+|||. .++. .-.||+-|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dvp-agsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDVP-AGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccCC-CCCeeeee
Confidence 999999999999999999999999999987654 44699999999995 3333 33344433
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=307.77 Aligned_cols=215 Identities=30% Similarity=0.403 Sum_probs=183.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.+.|.++++.|. +.+++|+++||++.+|+.+||+||||+||||++++|-.++++. +|.|.+||+++..
T Consensus 262 ~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~s 334 (497)
T COG5265 262 AVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334 (497)
T ss_pred eEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHH
Confidence 489999999994 5689999999999999999999999999999999999999986 9999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++-||.||||..||.. |...|+.|+..- .+..+.. +.+...++ -+++.+++.||+.+. .||||||
T Consensus 335 lR~aIg~VPQDtvLFND-ti~yni~ygr~~-----at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSggek 405 (497)
T COG5265 335 LRRAIGIVPQDTVLFND-TIAYNIKYGRPD-----ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGEK 405 (497)
T ss_pred HHHHhCcCcccceehhh-hHHHHHhccCcc-----ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCchH
Confidence 24679999999999987 999999998432 2233322 23333443 457889999998444 4999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+|||+++.+|+||+|||.||+||..+.++|...|+++. .|+|.+++.|.++ .+ --+|.|++|++|+|++.|+.+
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-ti-~~adeiivl~~g~i~erg~h~ 482 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-TI-IDADEIIVLDNGRIVERGTHE 482 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-hc-cCCceEEEeeCCEEEecCcHH
Confidence 99999999999999999999999999999999999999987 4899999999975 33 459999999999999999998
Q ss_pred hHHH
Q 010936 281 AAFE 284 (497)
Q Consensus 281 ~~~~ 284 (497)
+++.
T Consensus 483 ~ll~ 486 (497)
T COG5265 483 ELLA 486 (497)
T ss_pred HHHH
Confidence 8764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=329.38 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=166.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.|. +.+.+|+|+||+|++|++++|+|||||||||||++|+|+++|. +|+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------ee
Confidence 4699999999983 2346999999999999999999999999999999999999886 899998752 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
++|++|+. ++.+++.++..+......+ ... .+.+.++++.+|+.+ ..++. +..|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHH
Confidence 89999975 3445666664432211111 111 245778999999974 45554 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.+...+++.|.+. .| |||++||++ ..+..+||++++|++|+++ +.|+.++..
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999999999998888765 34 999999995 6788999999999999998 778776543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=277.08 Aligned_cols=157 Identities=29% Similarity=0.350 Sum_probs=131.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+++|+|+||++++|++++|+|||||||||||++|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 4679999999999999999999999999999999953 2 79999998743222234778776
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSG 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--p~lllLDEPTsg 224 (497)
.++++.++|.. ..++ +++.||||||||++||++|+.+ |+++||||||+|
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 13566778764 2454 4467999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+.++..+.+.|+++++.|+|||++||++ .++ +.||++++|.+|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~-~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNL-DVL-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEECCCCC
Confidence 999999999999999977799999999996 454 68999999966543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=326.93 Aligned_cols=207 Identities=23% Similarity=0.311 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++||+++| +.+.+|+||||+|++|+++||+|||||||||||++|+|+++|+ +|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------CEE
Confidence 58999999999 3467999999999999999999999999999999999999886 899999873 136
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHh------------------------------hccC-CCCCCHHHHHHHHHHHHHHcCC
Q 010936 131 AYVTQDDNLIGTLTVRETISYSA------------------------------RLRL-PDKMPWSEKRTLVERTIIEMGL 179 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL 179 (497)
+|++|.+......+|.+++..+. .+.. .......+...++.++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 78888654333346666542110 0000 0000001234568889999999
Q ss_pred CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 180 ~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
.. ++ .+..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++||++ ..+.
T Consensus 149 ~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~-~~l~ 217 (635)
T PRK11147 149 DP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDR-SFIR 217 (635)
T ss_pred CC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCH-HHHH
Confidence 62 44 44579999999999999999999999999999999999999999999887 25999999995 6788
Q ss_pred hcCCeEEEeeCCeEE-EEeCchhH
Q 010936 260 ELFDRLYLLSGGKTV-YFGETSAA 282 (497)
Q Consensus 260 ~~~D~v~~L~~G~iv-~~G~~~~~ 282 (497)
.+||+|++|++|+++ +.|+.++.
T Consensus 218 ~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 218 NMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999997 45776553
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=271.39 Aligned_cols=222 Identities=23% Similarity=0.343 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC--
Q 010936 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-- 124 (497)
.++++||++++.... .....+++.|||+++.|+.+||+|.||||||||.|+|+|.++|+ +|+|++||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCcccccc
Confidence 367889988875431 23456899999999999999999999999999999999999996 999999998742
Q ss_pred ---CCcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 125 ---LSFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 125 ---~~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
.+.+.|-+++||++ +.|.+.+.+-|....++ ...+....+.+++.+.|+.+||-+ .++- +++.||-|
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~ 153 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPG 153 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCch
Confidence 23467899999974 67888888888877654 345667778888999999999854 3433 67789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++||||+.+|+|++.||..++||...+.++++++-+|.++ |.+-|.++.+. ..+..++|.|++|++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 999999999999999999999999999999999999999999875 99999999995 6899999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
++.+++
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=349.49 Aligned_cols=194 Identities=25% Similarity=0.375 Sum_probs=158.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
+++|+|+|+++++|++++|+|||||||||||++|+|..+|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999986 89999987 48999999999986 99999
Q ss_pred HHHHhhccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010936 149 ISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD 226 (497)
+.|+.... .....+.. ...++.++.+ .+..+|.+|+ ++..|||||||||+||||++.+|+++||||||+|||
T Consensus 507 I~~g~~~~---~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 507 IIFGLSYD---EYRYTSVIKACQLEEDIALF--PEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHhccccc---hHHHHHHHHHHhHHHHHHhc--cccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99874321 00000000 0112222222 2344677876 577899999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 227 SAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 227 ~~~~~~i~~~-L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+.++..+.+. ++.+. +|+|+|++||++. .+ ..||+|++|++|+++..|+.+++.
T Consensus 581 ~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999985 66664 4899999999963 44 569999999999999999988875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=267.15 Aligned_cols=214 Identities=28% Similarity=0.366 Sum_probs=171.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe---cC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK--- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~---~~--- 124 (497)
.+++.++|+.| +.....+||||++.|||+++|+|+|||||||||++|++++.|+ .|+|.+.-.+ ..
T Consensus 6 LL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 58899999999 3456789999999999999999999999999999999999996 8999986532 11
Q ss_pred --C------CcCcEEEEcCCCC--CCCCC----CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 010936 125 --L------SFGTAAYVTQDDN--LIGTL----TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (497)
Q Consensus 125 --~------~~~~i~yv~Q~~~--l~~~l----TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (497)
. .+...|+|.|+|. +-... .|.|-++-.- .......++.+.++|+++.++... +. .
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G------~RHYG~iR~~a~~WL~~VEI~~~R---iD-D 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG------ARHYGNIRAEAQDWLEEVEIDLDR---ID-D 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh------hhhhhhHHHHHHHHHHhcccCccc---cc-C
Confidence 0 1234799999863 32222 3333332111 111234567788999999886432 22 3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.|+.+||||+||+.|||-|++.|+++|+||||.|||..-+..++++++.|..+ |..+|++|||. .-+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 67899999999999999999999999999999999999999999999999875 99999999995 56667899999999
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|-.+.++
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999777654
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=264.72 Aligned_cols=151 Identities=40% Similarity=0.612 Sum_probs=135.7
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcC
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (497)
++|+++.+. .+.+|+++|+++++|++++|+|+||||||||+++|+|.+++. +|+|+++|.+... ..+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHh
Confidence 578888883 357999999999999999999999999999999999999885 8999999986432 124
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++| |||||+||++||++
T Consensus 74 ~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 74 RIGYVPQ-----------------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred ceEEEee-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 5788887 89999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|+.+|++++|||||+|||+.++..+.+.|+++.+.++|+|++||++ .++..+||++++|++|+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999877789999999995 67888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=317.47 Aligned_cols=188 Identities=29% Similarity=0.370 Sum_probs=156.6
Q ss_pred EEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCC
Q 010936 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL 125 (497)
Q Consensus 57 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~-----------~~G~~~~~ 125 (497)
+++.|. .+..+|++++ .+++|+++||+||||||||||||+|+|+++|+ +|+|. ++|.+...
T Consensus 79 ~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHH
Confidence 566662 2346999999 99999999999999999999999999999986 89997 89976421
Q ss_pred -------CcCcEEEEcCCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
....++|.+|....+|. .||.|++... +....++++++.++|.+..|+.++ +|
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~L 213 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----EL 213 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hC
Confidence 11235666664433332 2999998642 123568899999999888887664 69
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ .++..+||+|++|+++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999999995 6888999999999864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=307.27 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=173.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.| +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. -++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ceE
Confidence 58999999999 5688999999999999999999999999999999999999886 899987542 368
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccc
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLR-------------LPDK--------------MPWSEKRTLVERTIIEMGLQDCA 183 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~ 183 (497)
+|++|++.+.+..||.+.+.-+..-. .... +..-+.+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999887753210 0000 0001123567788888998776
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 184 ~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
++.++ +||||||.||+||++|+.+|++|||||||++||..+...+-+.|++. .| |+|+|||| ...+-++|+
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t 218 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVAT 218 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhh
Confidence 77665 69999999999999999999999999999999999999999998754 56 99999999 789999999
Q ss_pred eEEEeeCCeEE-EEeCchh
Q 010936 264 RLYLLSGGKTV-YFGETSA 281 (497)
Q Consensus 264 ~v~~L~~G~iv-~~G~~~~ 281 (497)
+|+.++.|++. |.|.-+.
T Consensus 219 ~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 219 HILELDRGKLTPYKGNYSS 237 (530)
T ss_pred heEEecCCceeEecCCHHH
Confidence 99999999875 4565443
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=261.97 Aligned_cols=187 Identities=24% Similarity=0.378 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--- 127 (497)
.++.+||++.- ....++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|+++|.++...+
T Consensus 2 ~L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhH
Confidence 35667777765 4678999999999999999999999999999999999999996 999999998764322
Q ss_pred -CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 128 -~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
..+-|+-..+.+-+.|||.|||.|...+... . ....+.+.++.+||....|.+++ .||-||||||+||
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlA 142 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHH
Confidence 3467888889999999999999998776422 1 12457889999999999999876 5999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
|-++..+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999988889999999999853
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=320.53 Aligned_cols=247 Identities=21% Similarity=0.300 Sum_probs=196.2
Q ss_pred hhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCe
Q 010936 4 SAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGT 83 (497)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge 83 (497)
..|.+||.|+.+.+++ .. ... ....++..|. ..-.|+++|+++.|.. +...+|+||||+|+|||
T Consensus 1104 m~SVERv~eY~~~~~E-~p-~~~-~~~~pp~~WP----------~~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-AP-LEI-EESRPPPSWP----------SKGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGE 1167 (1381)
T ss_pred chhhhHHHHHhcCCCC-CC-CCC-cCCCCCCCCC----------CCCeEEEEEeEEEeCC---CCcchhcCceEEEcCCc
Confidence 3578999999986655 11 111 1111334443 2346999999999953 34679999999999999
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
.+||+|+.|||||||+++|-++..|. +|+|.+||.++.. .+++++.+||||.+|.+ |||.||.=..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~----- 1238 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD----- 1238 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc-----
Confidence 99999999999999999999999885 8999999998642 25689999999999998 9999986321
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 159 DKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
..+++ .+-++|+..+ ++...|+.|.+ .+.++|-||||.++|||||+++++||+|||.|+++|+.+-.
T Consensus 1239 -e~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1239 -EYSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred -ccCHH----HHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 12222 2333343333 33456777765 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.|.+.|++-= .++|||.+.|+.. .+. -+|||+||++|+++++|+|.++++
T Consensus 1313 lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1313 LIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999998853 4799999999974 454 499999999999999999998864
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=331.89 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=154.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 356999999999999999999999999999999999999885 8999864 46999999998875 59999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
|+.|+.... ............+++.++.+ .+..++.+|+ ++..|||||||||+|||||+.+|++|||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999863210 00000000011223334443 1223455554 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.++..+++.+......|+|+|++||++ .. ...||+|++|++|++++.|+.+++.
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~-~~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQV-HV-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999998875432223589999999996 34 4789999999999999999988865
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=315.59 Aligned_cols=240 Identities=25% Similarity=0.314 Sum_probs=192.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|..+.+|+.+.+..+ +.+..... . ....+....++++|.+++.... ...+.|+||||+|++
T Consensus 485 qa~VS~~Ri~~fl~~~-e~~~~~~~------~---------~~~~~~~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSE-ELDPDSVE------R---------SPDEAGENAIEIKNGSFSWDSE--SPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHhcCc-ccCccccc------c---------CCCCCCCceEEEeeeeEecCCC--CCcccccceeEEecC
Confidence 5778899999999743 32221100 0 0111233458999999987531 234589999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|+++||+|+-|||||+||.+|.|-.+.. +|+|.++|. ++||||.+.++.. ||+|||.|+..+.
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~d----- 609 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPYD----- 609 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCcccc-----
Confidence 9999999999999999999999998874 999999884 8999999999987 9999999986431
Q ss_pred CHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 162 PWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
+++.+++++...|+ ..-.|.||+ ++-+||||||||++||||+-++++|+|||.|.|++|.+....+.
T Consensus 610 -----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 610 -----EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred -----HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 24455566655543 445688887 56679999999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..-...-+++|+|++||+. +....||.|++|++|++...|+.+|+.+
T Consensus 684 ~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 86544333589999999994 5788899999999999999999999873
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=309.68 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=153.6
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--- 124 (497)
....|+++|++++| +.+.+|+|+||+|.+|+.+||+|||||||||||++|+|....+.+.+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 174 AIKDIHMENFSISV-----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred CceeEEEceEEEEe-----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 44569999999999 3466999999999999999999999999999999999964111123677765433210
Q ss_pred --C-------C-------cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHH-------------------HHHHH
Q 010936 125 --L-------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS-------------------EKRTL 169 (497)
Q Consensus 125 --~-------~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-------------------~~~~~ 169 (497)
. . ...++|++|++.+... ++.++...... ...+.. ....+
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0 0113444443322111 11111100000 000111 22345
Q ss_pred HHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 010936 170 VERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248 (497)
Q Consensus 170 v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI 248 (497)
+.+++..+|+. +..++.+ .+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 395 (718)
T PLN03073 324 AASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI 395 (718)
T ss_pred HHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence 66778888885 3345544 579999999999999999999999999999999999999999999886 68999
Q ss_pred EEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchh
Q 010936 249 ASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 281 (497)
Q Consensus 249 ~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 281 (497)
++||+. ..+..+||++++|++|+++ +.|+.++
T Consensus 396 ivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 396 VVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999995 6788999999999999996 6676554
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=262.99 Aligned_cols=189 Identities=25% Similarity=0.291 Sum_probs=134.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EecC---CCcCcE
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSGTILLN-----------G--HKTK---LSFGTA 130 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL-~~L~G~~~~~~~~~G~I~~~-----------G--~~~~---~~~~~i 130 (497)
..++|+||||++++||+++|+||||||||||+ ..+.. .|++.+. | .... ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 46799999999999999999999999999995 44431 1221110 0 0000 011123
Q ss_pred EEEcCCC--CCCCCCCHHH---HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHH
Q 010936 131 AYVTQDD--NLIGTLTVRE---TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 131 ~yv~Q~~--~l~~~lTV~e---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
++..|++ .+.|..+|.. ...+...+. .......+ .+.++.++|.+ ..+. ++.+|||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 3444443 2244456542 222221111 11112223 46789999975 3555 45689999999999
Q ss_pred HHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEE
Q 010936 205 IALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYF 276 (497)
Q Consensus 205 IA~aL~~~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~ 276 (497)
||++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++ .+||++++| ++|+++++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 59999999999999999999999999987899999999996 454 699999999 99999987
Q ss_pred e
Q 010936 277 G 277 (497)
Q Consensus 277 G 277 (497)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=248.99 Aligned_cols=209 Identities=27% Similarity=0.361 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEEccC--CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe--cC--
Q 010936 51 RLTWKDLTVMVTLSN--GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK--TK-- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~--~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~--~~-- 124 (497)
.+.++|+++++.... +-.-++|+|+||+++.||++++-|||||||||||++|-|-+.|+ +|+|++.-.. +.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 578899988886532 22357999999999999999999999999999999999999986 9999985432 11
Q ss_pred ---------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 125 ---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 125 ---------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
.+++.+|||.|.-...|..+..|.++-.+.-+ +++.+..+.++..++.++++.+..-. -.|.++
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~----LaPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWS----LAPATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhc----CCCccc
Confidence 12356899999888888888777776654333 56677778889999999999765433 256789
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
||||+|||.|||.++.+-+||+|||||++||..++..++++|.+-+..|..+|=+-|| .+--...|||++.+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999988889999999999 4445568999998863
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=240.59 Aligned_cols=132 Identities=42% Similarity=0.690 Sum_probs=118.1
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
|+|||+++++|++++|+|+||||||||+++|+|..+|. +|+|.++|.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999885 9999999998643 235799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
|| ....+++++++.+++.+..++.++. ....|||||||||+||+||+.+|+++||||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 1235588899999998888888765 457899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=256.21 Aligned_cols=195 Identities=27% Similarity=0.352 Sum_probs=150.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-----cCC-----CCC--C------CceeEEEECCEecCCCc---
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-----SRL-----ASN--A------FLSGTILLNGHKTKLSF--- 127 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~-----G~~-----~~~--~------~~~G~I~~~G~~~~~~~--- 127 (497)
..-|+|||.+|+.|.+++|.|+||||||||++.+. ..+ .|. . ...--|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 110 010 0 01123666665431100
Q ss_pred ------------------------C----cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 010936 128 ------------------------G----TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (497)
Q Consensus 128 ------------------------~----~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (497)
+ .+.|..++...+..|||.|++.|..... ...++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 1345556666667899999999986542 12456789999999
Q ss_pred Cc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 180 QD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 180 ~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.. ..+. .+..|||||+||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~- 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL- 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-
Confidence 76 3455 3457999999999999999996 799999999999999999999999999988899999999996
Q ss_pred hHHHhcCCeEEEe------eCCeEEEEeCc
Q 010936 256 SEVFELFDRLYLL------SGGKTVYFGET 279 (497)
Q Consensus 256 ~~i~~~~D~v~~L------~~G~iv~~G~~ 279 (497)
..+ +.||+++.| ++|++++.|++
T Consensus 233 ~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 444 679999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=265.05 Aligned_cols=214 Identities=25% Similarity=0.421 Sum_probs=179.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-- 126 (497)
...++++|++.. ..++||||++++||++||.|-=|||+|-|+++|.|..++. +|+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 445778777643 2578999999999999999999999999999999976664 89999999985432
Q ss_pred ----cCcEEEEcCC---CCCCCCCCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 010936 127 ----FGTAAYVTQD---DNLIGTLTVRETISYSARLRLP-D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (497)
Q Consensus 127 ----~~~i~yv~Q~---~~l~~~lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 196 (497)
...++|||.| ..++..++|.+|+.++...+.. . -++....++.++++.+.+++.. ..+..+ ..||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LS 403 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLS 403 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCC
Confidence 2468999997 5689999999999998322211 1 2455566678899999999853 344544 4799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||.+|||.|||.|..+|++|||||||.|.|.-+..+|.++|++++++|++||++|.+. +|+..+||||++|++|+++..
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 799999999999999999875
Q ss_pred eCch
Q 010936 277 GETS 280 (497)
Q Consensus 277 G~~~ 280 (497)
-+.+
T Consensus 483 ~~~~ 486 (500)
T COG1129 483 LDRE 486 (500)
T ss_pred eccc
Confidence 4433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=272.15 Aligned_cols=203 Identities=27% Similarity=0.319 Sum_probs=168.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 127 (497)
....++++|+++.|. +.+.+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYD----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccC----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 356799999999994 2378999999999999999999999999999999999998885 899987421
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHH
Q 010936 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 128 ~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
-.+||..|+. .+.+..|+.|++.-...- . .+..+...|..+++.. ...++| ..||||||.||.+
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~~-----~----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~L 450 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFPD-----G----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLL 450 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCcc-----c----cHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHH
Confidence 3589999985 445778999998754211 1 1456888999999964 345554 4799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE-eCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF-GETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~ 282 (497)
|+.++.+|.+|||||||+.||..+...+.+.|... .-|||+|||| ...+..+|++++.+.+ ++..+ |..++.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999998776 4599999999 5789999999999998 55444 665543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-30 Score=243.13 Aligned_cols=165 Identities=27% Similarity=0.356 Sum_probs=129.9
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC------CCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCC
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~------~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lT 144 (497)
+++++++++| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999987543 1224568787775421 235799999998766
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeC
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDE 220 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~p~lllLDE 220 (497)
|. .. ...+++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 01345666665 333444 44579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
||+|||+.....+.+.|+++++ +.|||++||++ .. .+.||+++.|..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 9999999999999999999865 68999999996 34 578999999963
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-31 Score=237.88 Aligned_cols=206 Identities=27% Similarity=0.416 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.+.++|+++.- -|-.+|+.+..||++-++|||||||||||-.++|+++. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhH
Confidence 46677776543 36789999999999999999999999999999999865 8999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.-+|+.|+..-...|.|+.++.+.- +.++....++++...++|.+...+.+ ..|||||.|||-+
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRL 136 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLHQ--------PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhcC--------chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEE
Confidence 1234579999877767789999887642 23455567888888999987776654 5799999999999
Q ss_pred HHHHHh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 206 ALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 206 A~aL~~-----~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|...+. || ++|+||||.++||......+-.+|.+++.+|.+|||+.||. +...+.+|++++|+.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecc
Confidence 987764 44 79999999999999999999999999999999999999996 57889999999999999999999
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
.++++
T Consensus 216 ~~eVl 220 (248)
T COG4138 216 REEVL 220 (248)
T ss_pred hhhhc
Confidence 99876
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-28 Score=238.41 Aligned_cols=183 Identities=20% Similarity=0.328 Sum_probs=129.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC----------------CCCCCCcee--------EEEECCEec
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR----------------LASNAFLSG--------TILLNGHKT 123 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~----------------~~~~~~~~G--------~I~~~G~~~ 123 (497)
++.++++++ |++++|+|||||||||||++|++. +.++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456788877 789999999999999999999843 3332 34 555555321
Q ss_pred ----C-C---CcCcEEEEcCCCCCCC-CCCHHHHHHHHhhccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCcccC
Q 010936 124 ----K-L---SFGTAAYVTQDDNLIG-TLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (497)
Q Consensus 124 ----~-~---~~~~i~yv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (497)
. . ..+.++|++|+..+++ .+|..|...+............ ..... ++.+.+++.+..+. .+.
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccc-----ccc
Confidence 0 0 1245889998887776 4677776666554322111000 00011 22223444443444 445
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.||||||||++||++|+. +|+++||||||+|||+.++..+++.|+++++ +.+||+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999865 78888888884 6789999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-29 Score=242.17 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=139.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-CCcCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~~~~~i 130 (497)
++++|.. .| +.+.+|+++++ ++++|+||||||||||+++|+-. +|.+.. ...+++
T Consensus 6 l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i 61 (212)
T cd03274 6 LVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKL 61 (212)
T ss_pred EEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhH
Confidence 5666654 34 35678999987 89999999999999999999722 222211 112468
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
+|++|+..+++.+|+++++.+....... .+........ ...++++.++|.+..++.+ ..||+|||||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~ 136 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLS 136 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHH
Confidence 8999998889999999987776543100 0111111000 1245566778877777654 46999999999
Q ss_pred HHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 204 SIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 204 ~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+||++++. +|++++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999974 4799999999999999999999999999854 57888889994 68899999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-28 Score=239.05 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=136.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE-ec-C------CCcCcEEEEcCCC---------CCCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KT-K------LSFGTAAYVTQDD---------NLIGTLT 144 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~-~~-~------~~~~~i~yv~Q~~---------~l~~~lT 144 (497)
..+++|+||||||||||+++|++.+.+. ..|++.+.|. +. . .....+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998763 2467877775 21 1 1224688999985 3456789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCCHHHHHHHHHHHHH
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
|.+++.+......... .+....+.+.++++.+||...... ...+.++..||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988866532211000 122234678889999998611000 011225668999999999999999
Q ss_pred H----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 210 L----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 210 ~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+ .+|++++|||||+|||+.+...+.+.|+++. +|.|||++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 489999999993 6788999999876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=240.07 Aligned_cols=234 Identities=24% Similarity=0.273 Sum_probs=175.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|.++|.++...++..+ ...+ +. +. .--.++++|+.|.|.. ..-=+..||++++.
T Consensus 291 ~AqvA~~kiakle~~~~~a~-----~~~~--------q~---~p--~~~~lelrnvrfay~~----~~FhvgPiNl~ikr 348 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD-----FPRP--------QA---FP--DWKTLELRNVRFAYQD----NAFHVGPINLTIKR 348 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc-----CCCC--------Cc---CC--cccceeeeeeeeccCc----ccceecceeeEEec
Confidence 57789999998876433321 1111 11 11 1124999999999953 22458899999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++-|+|.||||||||+++|+|++.|. +|+|++||+++... ++-++-|+-|-.+|+.+-
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------ 413 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------ 413 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------
Confidence 9999999999999999999999999996 99999999986421 233455666666666521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
.+++. ...+.++.+++++.|.+...-.=|+-.+-.||.|||||+++-.||+-+-+|+++||=.+.-||.-++.+.+.
T Consensus 414 ~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 414 GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11111 112457788888887654322222223456999999999999999999999999999999999999999887
Q ss_pred HHH-HHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 237 LRC-LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 237 L~~-l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+-- ++++|+||+.+|||- .-+..+||++.|++|++++.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 665 455799999999993 468999999999999998753
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=224.28 Aligned_cols=190 Identities=20% Similarity=0.210 Sum_probs=130.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEe-CCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCE-e---cC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAE-PGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGH-K---TK 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~-~---~~ 124 (497)
.|+++|+. .|. .. ++|+|... +|++++|+|||||||||||++|++.+ .+. .+....+.. . ..
T Consensus 5 ~i~l~nf~-~y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCC
Confidence 47777776 442 12 55666543 58999999999999999999999643 221 333332211 1 11
Q ss_pred CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 125 ~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.....+++++|++.... ++..+. .++..+..+.+ .+...++.+..++ .+..|||||+||++
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~ 133 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLAS 133 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHH
Confidence 12346889998763311 111110 22222221111 2333334444444 44579999999999
Q ss_pred HHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 205 IALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 205 IA~aL~~----------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||++|+. +|+++||||||+|||+.+...+.+.|++++++|.|||++||++ ..+...+|++++|++|.
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999985 6789999999999999999999999999987789999999996 57888999999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-27 Score=249.29 Aligned_cols=197 Identities=27% Similarity=0.382 Sum_probs=161.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|+++|+++.-+ ..+..|++.++.+++|+-+.|.||||||||||+|+|+|+.+.+ +|+|.+- ...
T Consensus 390 ~~~i~~~nl~l~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCC
Confidence 45799999999875 3458999999999999999999999999999999999999876 7887653 123
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-cccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN-WHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSgGerqRv~IA~ 207 (497)
.+-|+||.|.+... |.+|-+.|..... ..+ ++.+.++|.++||.+..++.=+. ..-+.||+||||||++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 57899999998887 9999998864321 122 34577889999998765442211 134579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.|+++|++++|||.|++||+.++..+.+.+++-. .+.|||-+.|++ .+..+.++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 9999999999999999999999999999998743 379999999996 4677777766654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=235.61 Aligned_cols=221 Identities=26% Similarity=0.374 Sum_probs=188.8
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CC-
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL- 125 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~- 125 (497)
....++++||++.-. .....+++|||++++||++||.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. ..
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccC
Confidence 456799999998753 2356899999999999999999999999999999999999775 69999999985 11
Q ss_pred -----CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 010936 126 -----SFGTAAYVTQDD---NLIGTLTVRETISYSARLRL----PDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (497)
Q Consensus 126 -----~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 192 (497)
....++|||+|. .+.+.+|+.||+.+...-+. ..-+.+...++.+.++++.+++... .+. ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----ch
Confidence 124589999985 57789999999998754321 1124567788889999999998632 233 34
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+.||||.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++-+. +|++.+||||.+|.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCc
Confidence 67999999999999999999999999999999999999999999999999999999999995 79999999999999999
Q ss_pred EEEEeCchh
Q 010936 273 TVYFGETSA 281 (497)
Q Consensus 273 iv~~G~~~~ 281 (497)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998877765
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=270.76 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=112.8
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCC
Q 010936 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPR 214 (497)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~---~~p~ 214 (497)
.+..+||.|+|.++..-.........+..+++ ++++.+||.+. .+.. +.+|||||+|||+||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 46678999999987653211111233444556 58889999765 5654 4579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee------CCeEEEEeCchhHH
Q 010936 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 283 (497)
Q Consensus 215 lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 283 (497)
+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.||++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999988899999999996 456 8999999996 78999999998875
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=223.45 Aligned_cols=164 Identities=19% Similarity=0.215 Sum_probs=124.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH----cCCCCCCCceeEEEECCEecC--CCcCcEEEEcCCC-----CCCCC
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALS----SRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDD-----NLIGT 142 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~----G~~~~~~~~~G~I~~~G~~~~--~~~~~i~yv~Q~~-----~l~~~ 142 (497)
..++++.+| +++|+|||||||||||++|. |...++ +|.+..+..... .....+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 555541111111 1234688999987 33455
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH------HHHHHHHHhCCCEE
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR------VSIALEILMRPRLL 216 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~IA~aL~~~p~ll 216 (497)
+|+.|++.+.. . ..+++.+ +. .++.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 68888876531 1 1122333 22 446799999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 217 FLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 217 lLDEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
++||||++||+.++. .+.+.|++++++ |.|||++||++ . ....||+++.|.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEee
Confidence 999999999999999 999999999876 89999999995 3 4578999999963
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=252.52 Aligned_cols=125 Identities=29% Similarity=0.387 Sum_probs=106.3
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p---~lllL 218 (497)
|||.|++.|...+. . .....+.|+.+||.. ..+.. +.+|||||+||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 123467899999975 34554 4579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..||+|+.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988899999999996 444 689999999 799999999988764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=212.10 Aligned_cols=229 Identities=20% Similarity=0.256 Sum_probs=178.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC-ceeEEEECCEec-----CC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTILLNGHKT-----KL 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~-~~G~I~~~G~~~-----~~ 125 (497)
+.++||+..+....+ ...++++||+++..||+-|++|+||||||-..|+|+|..+.+-. +.-...+++.+. ..
T Consensus 4 LDIrnL~IE~~TsqG-~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQG-WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCC-ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 567889888876543 46799999999999999999999999999999999998765211 122334555432 11
Q ss_pred C----cCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 010936 126 S----FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 ~----~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (497)
+ .+.+++++|++. +-|.-+|...+--....+...+..+ .-++.++-++|.++|+.+..|-. ..|+.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhc
Confidence 1 135789999974 4455455444433322222122111 12456788899999998866643 45899999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
-||-|+|.||.|++..|++|+.||||+.+|+.++.+|..+|.++.+ +|.||++++||. ..+.+.||++-+|.=|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999999999999999987 599999999996 67999999999999999999
Q ss_pred EeCchhHHH
Q 010936 276 FGETSAAFE 284 (497)
Q Consensus 276 ~G~~~~~~~ 284 (497)
.++.+++++
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=244.41 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEE
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLF 217 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~---~p~lll 217 (497)
.|||.|.+.|...+. . .....++++.+||... .++. +.+|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777765432 1 1134578888999752 4543 45799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhH
Q 010936 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 282 (497)
Q Consensus 218 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 282 (497)
|||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988899999999996 444 679999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-25 Score=230.10 Aligned_cols=214 Identities=23% Similarity=0.305 Sum_probs=146.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cC
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FG 128 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~ 128 (497)
-.+.+.|+|+.+ ..+.+++|++|++.+|+-+||+|+|||||||+|++|+|...|... +=.++.-.+..... ..
T Consensus 74 ~dvk~~sls~s~-----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-~~d~y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLSLSF-----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-HIDFYLLSREIEPSEKQ 147 (614)
T ss_pred ccceeeeeeecc-----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-ccchhhhcccCCCchHH
Confidence 358999999998 468899999999999999999999999999999999999887421 11222222211100 00
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhc-cC--C--------------CCCCHHHHHHHHHHHHHHcCC-CccccccccCc
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARL-RL--P--------------DKMPWSEKRTLVERTIIEMGL-QDCADTVIGNW 190 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~-~~--~--------------~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~ 190 (497)
.+-++.+ +.-..+.-+.+...- .. + ..+..+....++..+|..+|. ++..++.+
T Consensus 148 av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~--- 219 (614)
T KOG0927|consen 148 AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV--- 219 (614)
T ss_pred HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh---
Confidence 0001110 000111111111000 00 0 012223344556667776665 34556544
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.++|||+|.|++|||+|..+|++|+|||||+|||..+...+-+.|.+... .++|+++|. .+.+-.+|.+|+.|++
T Consensus 220 --~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 220 --KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLDN 294 (614)
T ss_pred --hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheecc
Confidence 57999999999999999999999999999999999999999998876522 289999998 5789999999999999
Q ss_pred CeE-EEEeCchhH
Q 010936 271 GKT-VYFGETSAA 282 (497)
Q Consensus 271 G~i-v~~G~~~~~ 282 (497)
++. .|.|+.+..
T Consensus 295 kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 295 KKLIYYEGNYDQY 307 (614)
T ss_pred cceeeecCCHHHH
Confidence 995 556776554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=220.70 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=152.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++|.++++.+. ---|.-=.+++..||+++++||||-||||+.++|+|.++|+ +|+ .. .-
T Consensus 340 ~~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-----~~ 401 (591)
T COG1245 340 DTLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-----DL 401 (591)
T ss_pred ceeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-----cc
Confidence 45678888888772 22456667788889999999999999999999999999996 776 11 12
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
+++|=||--.--...||.+.|.-......... -...++++-|.|++..++.+. +|||||.|||+||.+
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~ 469 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAA 469 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHH
Confidence 57888886544456799998876654321111 224567788899888888664 699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|.+++++++||||++.||.+.+..+.+.|++... .++|.+++-||. ..+.-++||+++..
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999999999999999999999999999999987 489999999996 46677789998874
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-25 Score=227.68 Aligned_cols=202 Identities=20% Similarity=0.257 Sum_probs=158.8
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 127 (497)
++..+.++|+++.|.. +-.++++++|-+..++.++++||||+|||||||++.|.+.|. .|.|.-.-+
T Consensus 386 p~pvi~~~nv~F~y~~----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSD----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCC----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------
Confidence 4557899999999952 237999999999999999999999999999999999999995 788754322
Q ss_pred CcEEEEcCC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHH
Q 010936 128 GTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 128 ~~i~yv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ 204 (497)
-.+++..|. +.+.-..++-|++.=... .....+.+..+|.++||... .+.+ .++||+|||+||.
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~~--------~~~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~Gqr~rVl 519 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKFP--------DEKELEEMRSILGRFGLTGDAQVVP-----MSQLSDGQRRRVL 519 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhcc--------ccchHHHHHHHHHHhCCCccccccc-----hhhcccccchhHH
Confidence 234455554 334445577777653321 11234567889999999844 4444 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCc
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGET 279 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~ 279 (497)
.|+.++..|.+|+|||||+|||..+...+.+.|.++ .-+||++|||. -.|.+++++|.+..+|.+. +.|+.
T Consensus 520 Fa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 520 FARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999999988775 35899999995 5789999999999887764 44544
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=204.16 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=120.9
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe----c--CCCcCcEEEEcCCCCCCCCCCH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----T--KLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~----~--~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
++++++.+.+| +.+|+|||||||||||.+|....... .. ...-|.. + ......+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~---~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK---AS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC---cc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46788888888 88999999999999999997433221 00 0011211 0 1112357788887665541
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEP 221 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL----~~~p~lllLDEP 221 (497)
. .. ......++++++. .+..++. ++.||+|||||++||++| +.+|++++||||
T Consensus 84 --------~------~~-~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------P------LC-VLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------c------CC-HHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 0 00 1113456677765 4445554 457999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRD---GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~---g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|+|||+.++..+.+.|+++.++ +.|||+++|++ .++.+ +|+|.+|+.++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 9999999999999999998653 36899999996 46665 49999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-24 Score=211.44 Aligned_cols=179 Identities=22% Similarity=0.238 Sum_probs=119.5
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec--C---C-----CcCc--EEEEcCCCCC-CCCCCH
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT--K---L-----SFGT--AAYVTQDDNL-IGTLTV 145 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~--~---~-----~~~~--i~yv~Q~~~l-~~~lTV 145 (497)
..++ +++|+|||||||||||++|++.+.+. .|++..++... . . .... +.|..|++.. .-.-++
T Consensus 20 ~~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~ 95 (247)
T cd03275 20 PFDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRII 95 (247)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEE
Confidence 3344 99999999999999999999988653 46665443210 0 0 0112 3344443221 001111
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------ccCCCCHHHHHHHHHHHH
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------VIGNW--------HLRGISGGERRRVSIALE 208 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~IA~a 208 (497)
.+... ..+.. + .......++++++.+|+...... .+.+. .+..||||||||++||++
T Consensus 96 ~~~~~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~a 169 (247)
T cd03275 96 TGGSS---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALL 169 (247)
T ss_pred ECCce---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHH
Confidence 11100 00101 1 01112346788888898533111 11111 237899999999999999
Q ss_pred HHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 209 ILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 209 L~~~----p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
++.+ |+++||||||+|||+..+..+.+.|++++++|.+||++||++ ++...||++++|.
T Consensus 170 l~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 170 FAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred HHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 9875 899999999999999999999999999987799999999994 5678999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-24 Score=220.50 Aligned_cols=204 Identities=21% Similarity=0.253 Sum_probs=146.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|...+.+..| +.+.+|++-++++..|.-+||+|+||+|||||||+|+. |.|.....+...
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--- 140 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---
Confidence 4568888888888 56889999999999999999999999999999999984 333322211100
Q ss_pred cEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
.-.|++-. ..+...+++.+.+.--..+. ... +..+...++|..+|..+..-. ...++||||.|-|++|||
T Consensus 141 ~g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 141 RGDDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALAR 211 (582)
T ss_pred eccchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHH
Confidence 01233322 22333333333332211110 011 223334448888998654321 244679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE-EEEeCchhH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSAA 282 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~ 282 (497)
||..+|+||||||||+.||..+..-+.+.|..+ ..|+|++||| +..+-..|..|+.+++-++ .|.|+-++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999999998776 4799999999 6788899999999987776 355765543
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=211.10 Aligned_cols=204 Identities=20% Similarity=0.268 Sum_probs=158.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..+++++++..-+. .+..+++|+||+|..|+-+.|.||||||||+||++|+|+.+.. +|.+..-... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CCCc
Confidence 56999999987642 1466889999999999999999999999999999999999864 8988754321 1256
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCcccCCCCHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV------IGNWHLRGISGGERRRV 203 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv 203 (497)
+-|+||.|.+.-. |.||-+.|....-. ...+...++++.+.|+.++|.|..++. +--..-..||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8899999988766 99999988743211 111112234566777777776543322 21123457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.||-+.++|++-||||-||++|......+.+.++++ |.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999998888887664 999999999963 6777788888874
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=203.85 Aligned_cols=191 Identities=27% Similarity=0.360 Sum_probs=152.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
+..+-+.|+++.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+.+-| ++-
T Consensus 584 PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRL 650 (807)
T ss_pred CCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------cee
Confidence 44688999999985 5688999999999999999999999999999999999999996 6766433 233
Q ss_pred cEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 129 TAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 129 ~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
+||+..|.. .+-..-|.-|+|.-...+ +. +.+...|-.+||...++|. .+..|||||+-||++|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FNl------py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFNL------PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcCC------Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHH
Confidence 688888863 455556787877654322 22 2355678889999888885 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.--+..|+||||||||++||..+...+.+.|.+. .-.||+++||-. .+.+---.++++.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999999988776 458999999953 34444445566554
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=182.32 Aligned_cols=210 Identities=22% Similarity=0.280 Sum_probs=159.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|++.++.|.|+. .-+++-|+|++++.|.-..++|.||||||||||+|+|-.-.. .|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccc
Confidence 45999999999963 348999999999999999999999999999999999975443 5899999986311
Q ss_pred -CcCcEEEEcCC----------CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 126 -SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 126 -~~~~i~yv~Q~----------~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
......|+--+ -.+-..+++.+ +.|+.. .... ++-+++++.+.+.-. .+.+.
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~-------WRmHk 147 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLR-------WRMHK 147 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccce-------EEEee
Confidence 11223443221 12233556644 344422 1111 344566666666421 13356
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|-|||+||.|++.|++.=++|+|||-|--||..++..+++.+++-+++ |.|||..||.- +-+.....+++.|++|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 9999999999999999999999999999999999999999999998874 99999999995 678899999999999999
Q ss_pred EEEeCchhHHH
Q 010936 274 VYFGETSAAFE 284 (497)
Q Consensus 274 v~~G~~~~~~~ 284 (497)
+-.-+.+++.+
T Consensus 227 ~~~l~~~~i~e 237 (291)
T KOG2355|consen 227 VDNLKYQKIKE 237 (291)
T ss_pred eeccccchhhh
Confidence 87555554443
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-22 Score=189.21 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=109.4
Q ss_pred eeceEEEEeCCe-EEEEECCCCChHHHHHHHHH--------cCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCC
Q 010936 72 LEGLTGYAEPGT-LTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 72 L~~vs~~i~~Ge-~~aIlG~nGaGKSTLL~~L~--------G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~ 142 (497)
.-++|+++.+|+ +++|.|||||||||||++|+ |...|. .. ...++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~------------~~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AE------------GSSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---cc------------cccCcCccEEEE----
Confidence 457999999994 89999999999999999998 332221 00 011233333211
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
.++..+..+. ....+|+||||++.|+++ +.+|+++++|||+
T Consensus 78 ---------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 78 ---------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ---------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 0111111111 223699999999999987 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 223 SGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 223 sgLD~~~~~~i~-~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|||+..+..+. ..++.+.+.|.++|++||+ .++..+||+++.|++|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 4678887778999999998 3678999999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=188.91 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=69.1
Q ss_pred ccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCChHHHhcCC-
Q 010936 191 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 263 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL----~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvI~~tH~~~~~i~~~~D- 263 (497)
.+.+||||||||+.+|++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+. .++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCc
Confidence 4568999999998877554 5899999999999999999999999999999776 5 5899999995 35667776
Q ss_pred -eEEEeeCCe
Q 010936 264 -RLYLLSGGK 272 (497)
Q Consensus 264 -~v~~L~~G~ 272 (497)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-22 Score=200.87 Aligned_cols=169 Identities=29% Similarity=0.439 Sum_probs=130.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-------------CC-------Cc----CcEEEE
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-------------KL-------SF----GTAAYV 133 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-------------~~-------~~----~~i~yv 133 (497)
+.++|+++||+|+||-||||-+|+|+|.+.|+ =|+ .++.+. .. .. .+.-||
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN---LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYV 170 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN---LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYV 170 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC---CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHH
Confidence 35799999999999999999999999999986 232 122110 00 00 112233
Q ss_pred cCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 134 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
.--|..+.. ||.|-|.-.. .+-..+++++.++|.+..|+.+. .|||||-||++||.++++++
T Consensus 171 d~iPk~~KG-~v~elLk~~d------------e~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 171 DLIPKVVKG-KVGELLKKVD------------ERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHHHHhcc-hHHHHHHhhh------------hcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccC
Confidence 333334444 6766654321 12347889999999999998775 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+++++|||||-||...+....+.++++++.+++||++.||+ .-+--++|-|.++..
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 99999999999999999999999999998899999999995 455556888888863
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-21 Score=197.07 Aligned_cols=197 Identities=23% Similarity=0.267 Sum_probs=155.5
Q ss_pred eEEEEEeEEEEEEccCCccc-ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 50 ARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
..+++.++++.|+. .. +++.++++.++.-.-.+++|+||+||||++|++.|-..|. .|.+.+.+ +.
T Consensus 361 p~l~i~~V~f~y~p----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~------r~ 427 (582)
T KOG0062|consen 361 PNLRISYVAFEYTP----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP------RL 427 (582)
T ss_pred CeeEEEeeeccCCC----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc------cc
Confidence 45889999988853 33 7999999999999999999999999999999999987764 78776654 35
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+++|-.|...=+-.+.|.+.- +....+ | +.+. +.+.+-+..+||+.. +.. ...+||||||=||++|.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFAA 495 (582)
T ss_pred eecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHHH
Confidence 688988865434344554432 222222 2 2232 346677888999643 332 24579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
....+|.+|+|||||+.||..+-..+.+.|+.. +-.||++||+ ...+..+|+.+++.++|++.-
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999888776 4589999999 578999999999999999864
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=173.81 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 195 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 195 LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999995 35678999999964
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-19 Score=208.64 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEE
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFL 218 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---p~lllL 218 (497)
.|||.|.+.|.... .+-.+.-+.|..+||... .+|. ...+|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl---~LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYL---PLGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCee---eCCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 36777777765321 122345678888999643 2332 4567999999999999999875 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (497)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.||.|+-| +.|++++.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999995 577789999999 4679999999998754
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=191.60 Aligned_cols=128 Identities=31% Similarity=0.448 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p---~lllL 218 (497)
.|||.|...|+... + .-.+..+.|..+||.-. .+|. ...+|||||.|||-||.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36777777776432 1 12334567778898632 3443 55689999999999999999877 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (497)
||||+||-......+++.|.+|..+|-|||++.|++ ++.+.||.|+-| ..|++++.|+|+++..
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999995 588999999998 4689999999999864
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-20 Score=175.55 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=106.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+... ..+++|.+.+|+.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 45788887765 79999999999999999999987542 1123433221 1366777788999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
+.++... ...+ ..++.++++.+++ .+|+++|+||||+|||+.
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9875421 1222 2456777766552 689999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCEEEEEeCCCChHHHhc--CCeEEE
Q 010936 229 AAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYL 267 (497)
Q Consensus 229 ~~~~i~-~~L~~l~~~g~tvI~~tH~~~~~i~~~--~D~v~~ 267 (497)
.+..+. ..++.+.+.|.|+|++||++ ..+..+ .++|..
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~ 162 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEE
Confidence 998775 47888877789999999996 444433 344444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-20 Score=179.35 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=115.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE-EEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 146 (497)
.+.+.+|++++..+|++++|.||||+||||||++++-.. ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-------------------HHHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999997110 001222 5555432111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~p~lllLDEP--- 221 (497)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344555665332 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|++||+...... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3345544 48999999997 57899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=187.95 Aligned_cols=194 Identities=23% Similarity=0.304 Sum_probs=138.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|.++|+-+-.+ ....++..++|.+++|--+.|+||||||||+|+++|+|+.+-. .|...+ ....+
T Consensus 480 ~gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy---~g~L~~------P~~~~ 546 (728)
T KOG0064|consen 480 NGIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY---NGLLSI------PRPNN 546 (728)
T ss_pred cceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc---CCeeec------CCCcc
Confidence 3478888876553 3456889999999999999999999999999999999998753 454432 22345
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhcc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccC----cccCCCCHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLR--LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRV 203 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSgGerqRv 203 (497)
+-|+||.|.+--. |.+|-+-|.-..- ...+... +....+|..+.|++...+-.|= ..-.-||||||||+
T Consensus 547 mFYIPQRPYms~g-tlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 547 IFYIPQRPYMSGG-TLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred eEeccCCCccCcC-cccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH
Confidence 8999999877633 7777766542110 0012222 2344555555555443332220 12235999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
++||.+.+.|+.-+|||-||+..+.....+.+..++ .|.+.|-++|+|+ +..+-.+++
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 999999999999999999999998888877776654 4999999999986 455444333
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=179.62 Aligned_cols=185 Identities=26% Similarity=0.370 Sum_probs=138.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC-----CCCceeEEEECCEecCCCcCcEEEEcCCCC-CCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-----NAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIG 141 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~-----~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~ 141 (497)
...+|+|||++++||++++|+|+|||||||||++|+|.... ..+.+|.|.+--. ...+.+|-+.- -|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n------t~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN------TVSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc------chhhccCcccccccC
Confidence 35799999999999999999999999999999999997532 1124676655221 12345555422 233
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
..|+.|.+.-- ... -..+.++|...||.+.. .-....++||-|||.|+.||.++...|.+++.||-
T Consensus 469 ~~tilehl~s~-----tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRSK-----TGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhhc-----cCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 45666665311 111 12356789999997532 11225568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhc-CCeEEEeeCCeE
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFEL-FDRLYLLSGGKT 273 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~i 273 (497)
.|.||+.++..+..-|.+++++ |.|++++||+| +.+-++ =|.++.+.-|.+
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeecccc
Confidence 9999999999999999999875 99999999997 445555 588888765554
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=176.31 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.|||||+||++||++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|++||++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999963 678999999998
Q ss_pred CCe
Q 010936 270 GGK 272 (497)
Q Consensus 270 ~G~ 272 (497)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-19 Score=164.84 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|++||++ ++...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 399999999999999987 7899999999999999999999999998866689999999995 4667899999996
Q ss_pred C
Q 010936 270 G 270 (497)
Q Consensus 270 ~ 270 (497)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=195.01 Aligned_cols=136 Identities=25% Similarity=0.390 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHhhccCCCC-CC-----HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 010936 140 IGTLTVRETISYSARLRLPDK-MP-----WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~-~~-----~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 212 (497)
+..|||.|.+.|...+..+.. .. ..+...+++ .|+.+||.+. .|+.+ .+|||||+|||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 456899999999654422110 00 012334453 6888899765 67755 47999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 213 p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
| ++|+|||||+|||+..+..+++.|+++++.|.|||+++|++ .++ ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999988899999999996 455 469999999 999999999998864
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-19 Score=168.69 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=103.4
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
.++++.+|++++|+|||||||||||++|++..-.. ..|... ......++|..|. +..++..+
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~~~~~~i~~~dqi---~~~~~~~d------- 83 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------PAESASIPLVDRI---FTRIGAED------- 83 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------cccccccCCcCEE---EEEecCcc-------
Confidence 45556689999999999999999999999532110 122110 0001122332221 11111111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
.... ..+.+|++++| +..+.+++.+|+++|+||||+|||+.....+.
T Consensus 84 ---------------------------~i~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 ---------------------------SISD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ---------------------------cccC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 1111 11246666665 66667889999999999999999999988876
Q ss_pred H-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 235 Q-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 235 ~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
. +++.+.+.+.++|++||++ ++...++++..+..|++...++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 5666766789999999994 5778899999999999988876544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-18 Score=192.12 Aligned_cols=135 Identities=27% Similarity=0.355 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 141 GTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
..|||.|.+.|...+........ .+...++ +.+..+||... .++. +.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999988866532210000 1112222 34677788654 4554 4579999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 214 --~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
.+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999988899999999995 455 589999999 899999999988864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-19 Score=178.79 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=150.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC---CCCCCceeEEEECCEecC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTK- 124 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~---~~~~~~~G~I~~~G~~~~- 124 (497)
.+.|.++|.+.+. ..+.++.|-|++|-.|..++++||||-||||||+-|+.+- +| .=+|++..+.+.
T Consensus 262 a~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvva 332 (807)
T KOG0066|consen 262 AMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVA 332 (807)
T ss_pred cccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeee
Confidence 4678899988887 4578899999999999999999999999999999999763 33 234444443210
Q ss_pred -----------CCcCcEEEEcCCCC-----CCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-cccc
Q 010936 125 -----------LSFGTAAYVTQDDN-----LIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTV 186 (497)
Q Consensus 125 -----------~~~~~i~yv~Q~~~-----l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ 186 (497)
...++...+..+.. --...|+.|-+.-.+ .++. +.....+.++..+|.-+|.+.. .++
T Consensus 333 d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~r- 408 (807)
T KOG0066|consen 333 DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQER- 408 (807)
T ss_pred cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcC-
Confidence 00111111111110 112346666554332 2221 1122345667788988888653 333
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 187 vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
....+|||.|-||++||||...|-+|.|||||+.||..+...+-++|+.+. +|.+|++||- ..+...|..|+
T Consensus 409 ----Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdII 480 (807)
T KOG0066|consen 409 ----PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDII 480 (807)
T ss_pred ----CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHh
Confidence 335699999999999999999999999999999999999888888988874 5999999995 68899999999
Q ss_pred EeeCCeEEEE-eC
Q 010936 267 LLSGGKTVYF-GE 278 (497)
Q Consensus 267 ~L~~G~iv~~-G~ 278 (497)
.|++-++-|+ |.
T Consensus 481 HLD~qkLhyYrGN 493 (807)
T KOG0066|consen 481 HLDNQKLHYYRGN 493 (807)
T ss_pred hhhhhhhhhhcch
Confidence 9998887544 54
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=162.58 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=63.5
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 192 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
..-+|+||+|+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999997752 355555553 4566777
Q ss_pred ---CeEEEeeCCeE
Q 010936 263 ---DRLYLLSGGKT 273 (497)
Q Consensus 263 ---D~v~~L~~G~i 273 (497)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=157.36 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=98.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE-EEEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-AYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i-~yv~Q~~~l~~~lTV~ 146 (497)
++.+.+|+++++++|++++|+||||+|||||++++++..-- + ++ .|| +..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a--------------~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----A--------------QIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----H--------------HcCCCc---chhhcCccCh
Confidence 45789999999999999999999999999999999876311 0 11 133 3334555666
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD 226 (497)
|++... ++..+..+. ..+.+|+|++|+ ..+.+++.+|+++|||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 665322 222221222 224689999975 56667889999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCCEEEEEeCCC
Q 010936 227 SAAAFFVT-QTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 227 ~~~~~~i~-~~L~~l~~~g~tvI~~tH~~ 254 (497)
+.....+. ..++.+.+.|.++|++||+.
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 98766654 46777777799999999994
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=155.03 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=108.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
+.+.+|++++.++ ++++|+|||||||||||+++++..-. |+ .|.........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 4588999999887 99999999999999999999875321 11 12222212245666654 5677777776
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH--HHHHHHHHHHHHHhCCCEEEEeCC---CC
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG--GERRRVSIALEILMRPRLLFLDEP---TS 223 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~IA~aL~~~p~lllLDEP---Ts 223 (497)
+..+. |. .|.++++-+...+.+|+++||||| |+
T Consensus 86 ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 64331 11 122233333334579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++.
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8887552 23445555555 89999999994 678899998888899988877766553
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=152.40 Aligned_cols=178 Identities=22% Similarity=0.334 Sum_probs=136.4
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCC
Q 010936 68 THNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 68 ~~~iL~~vs~~i~~G-----e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~ 142 (497)
.+.-+-+..+.|+.| |++..+|.||.|||||+++++|+++|+ ..|+|-. -.++|=||...--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCcccc
Confidence 355677888888877 578899999999999999999999986 2333321 246788887554444
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
-||++.+.--.+- .-...+.+.++++-|.+++..|..| .+|||||.|||+||..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5888876432111 1112356778888888887777655 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 223 SGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+-||++.+...-+.+++.. +..+|-.++.||.. ...-++|||++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999999999999999864 45799999999953 3445789987753
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-15 Score=148.09 Aligned_cols=138 Identities=28% Similarity=0.322 Sum_probs=93.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C---cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S---FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
.-++|+||||||||||+++|+|.++++ +|+|.++|++... . ...+++++|.+ +.+.++|.++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 578999999999999999999999986 8999999987531 1 12356777754 3344455443110
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
..| ..+..+..+|+++++|||++ ...+..+
T Consensus 183 ---------------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 183 ---------------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ---------------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 001 12223336999999999974 2334445
Q ss_pred HHHHHhCCCEEEEEeCCCCh-HH-----------HhcCCeEEEeeCCeEEEEeCchhH
Q 010936 237 LRCLSRDGRTVIASIHQPSS-EV-----------FELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 237 L~~l~~~g~tvI~~tH~~~~-~i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
++.+ +.|.++|+++|++.. ++ ..+|||+++|++|+ ..|+++++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5544 469999999998532 12 26799999999876 55666543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-15 Score=143.72 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.+|+|++|...+.. .+.+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+++
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 468888887433332 23499999999999999999887765 556777764 89999999995 57888886444455
Q ss_pred CeEEEE
Q 010936 271 GKTVYF 276 (497)
Q Consensus 271 G~iv~~ 276 (497)
+++...
T Consensus 137 ~~~~~~ 142 (185)
T smart00534 137 LHMSAD 142 (185)
T ss_pred EEEEEE
Confidence 554433
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=140.84 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=66.0
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 192 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
...+|.||+|++.||+.|+ .+|+|+|||||+++||+..+..+++.|.++ +..+++++|++ ..+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~-~~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDL-EDLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCCh-hhhhhhh
Confidence 3578999999999999886 799999999999999999999999988754 45889999985 3455553
Q ss_pred --CeEEEeeCCeE
Q 010936 263 --DRLYLLSGGKT 273 (497)
Q Consensus 263 --D~v~~L~~G~i 273 (497)
++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999986
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=139.38 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 010936 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (497)
Q Consensus 168 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (497)
..+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556665555332 59999999999997664 46799999999999999999999999999865
Q ss_pred CCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 244 GRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 244 g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+.-+|++||++ ..+..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999994 6899999988764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=131.34 Aligned_cols=128 Identities=25% Similarity=0.234 Sum_probs=85.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCC-CCCCHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI-GTLTVRE 147 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G--~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~-~~lTV~e 147 (497)
+=+|+++.=..+.+++|.||||+|||||||.++. .+.. .|...... .-.++|..|....+ ...++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhh
Confidence 4455554322237999999999999999999983 3321 45443221 13466776643211 1111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
++| .-|-||++++++++.+|+++|+|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 34569999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 010936 226 DSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 254 (497)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~---g~tvI~~tH~~ 254 (497)
|+.....+ ...++.+.+. +.++|++||++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 99865555 5688888664 35899999995
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-14 Score=158.31 Aligned_cols=128 Identities=22% Similarity=0.233 Sum_probs=90.3
Q ss_pred eEEEEeCC-eEEEEECCCCChHHHHHHHHHcC-CCCCCCceeEEEECCEecCCCcCcEEEEcCCCC-CCCCCCHHHHHHH
Q 010936 75 LTGYAEPG-TLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIGTLTVRETISY 151 (497)
Q Consensus 75 vs~~i~~G-e~~aIlG~nGaGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~~lTV~e~l~~ 151 (497)
+|+.+.+| ++++|.||||+|||||||+|+|. +.+. .| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G----------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SG----------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hC----------------CCccCCcccccc---chhhee-
Confidence 78888887 99999999999999999999987 2221 22 13343321 111 111110
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
. .+... + .+. ...+++|+|+++++.|++.+ .+|+++|+|||++|+|+....
T Consensus 371 -~------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -A------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -e------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 00000 0 011 02346999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHhCCCEEEEEeCCC
Q 010936 232 FV-TQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 232 ~i-~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+ ..+|..+.+.|.++|++||+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChH
Confidence 99 567888877899999999995
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=116.30 Aligned_cols=72 Identities=18% Similarity=0.045 Sum_probs=59.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----CCcCcEEEEcCCCCCCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTL 143 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-----~~~~~i~yv~Q~~~l~~~l 143 (497)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+.. ...+..+|++|+ +++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999985 588999998742 123446777777 5544
Q ss_pred CHHHHHHHH
Q 010936 144 TVRETISYS 152 (497)
Q Consensus 144 TV~e~l~~~ 152 (497)
|++|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999884
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-12 Score=127.43 Aligned_cols=138 Identities=21% Similarity=0.260 Sum_probs=89.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC-CCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
+.+.+|+++.+.+|++++|.||||+||||+|+++++. +.+ ..|.....- . -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~-~-----~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPAS-S-----ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcC-c-----eEEeccce---EEEEecCcc
Confidence 5689999999999999999999999999999999983 333 256543321 1 12233222 111111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 22334444444455689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCChHHHhcC
Q 010936 226 DSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~ 262 (497)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777765 5677777775 89999999995 344444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-13 Score=136.32 Aligned_cols=171 Identities=27% Similarity=0.345 Sum_probs=119.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEEC------CEecCCCc-C----------cEEEEcCCCCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLN------GHKTKLSF-G----------TAAYVTQDDNLI 140 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~------G~~~~~~~-~----------~i~yv~Q~~~l~ 140 (497)
+||++.+++|.||-||||-|++++|.++|+. ...+-.+-+ |-...... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 5899999999999999999999999999861 011111100 00000000 0 001222211111
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
. .+|.+++.- ...+...+++++.+.|.+..++.+. .|||||-||.+||.+-+.+.+++++||
T Consensus 178 k-~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 1 133333221 1122345677888888888887664 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|.+-||...+..-...|+.+.....=||++.||. +-+.-+.|-+.+|.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLY 287 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLY 287 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEe
Confidence 9999999999999999999988889999999996 44555678888776
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-13 Score=127.60 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCHH--HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 010936 195 ISGG--ERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 242 (497)
Q Consensus 195 LSgG--erqRv~IA~aL~~~p~lllLDEPT-----sgLD~~~~~~i~~~L~~l~~ 242 (497)
.||+ |++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 4444 999999999999999999999999 99999999999999999865
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=143.43 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 193 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~----p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||++||+| .+...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 89999999996 355799999999
Q ss_pred eCCe
Q 010936 269 SGGK 272 (497)
Q Consensus 269 ~~G~ 272 (497)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-12 Score=127.02 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE--CCEe-cC--CC---cCcEEEEcCCCCCCCCCCH---
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL--NGHK-TK--LS---FGTAAYVTQDDNLIGTLTV--- 145 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~--~G~~-~~--~~---~~~i~yv~Q~~~l~~~lTV--- 145 (497)
+.+..|+.++|+||+|+|||||++.|++..... .....+++ -|.+ .. .. ...+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 468899999999999999999999999877542 01122222 1211 00 00 011222222221 111000
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH--------HHHHHHHHHHHhCCCEEE
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--------RRRVSIALEILMRPRLLF 217 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~IA~aL~~~p~lll 217 (497)
+.-+..+..++. .+...- -.++++ -.+....++.++. ....+|||+ +||+++||++..+++|.+
T Consensus 89 ~~~~~~a~~~~~-~G~~vl---l~iDei---~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 89 EMVLEKAKRLVE-HGKDVV---ILLDSI---TRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHH-CCCCEE---EEEECH---HHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 011111111100 000000 000000 0011223333332 445689999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 218 LDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 218 LDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
| ||+.+|+.+... ++ +..+...+.|.|+.+|+.. ....+|.|.+|+.|..
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9 999999655543 54 5555546789999999963 4678999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=128.31 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=113.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec---C------C----CcCcEEEEc
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---K------L----SFGTAAYVT 134 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~---~------~----~~~~i~yv~ 134 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998885 89999976532 1 0 124577887
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC-HHHHHH-HHHHHHHHhC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS-GGERRR-VSIALEILMR 212 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqR-v~IA~aL~~~ 212 (497)
+.+. ++.+-+.-+. .--.+.|.+..-|- |..+- ...++ --|-+| ++++ +.+
T Consensus 221 ~~~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~rEisl~---~ge 273 (438)
T PRK07721 221 TSDQ-----PALMRIKGAY------------TATAIAEYFRDQGL----NVMLM---MDSVTRVAMAQREIGLA---VGE 273 (438)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----cEEEE---EeChHHHHHHHHHHHHh---cCC
Confidence 6432 1111111000 00112233332232 11110 01121 011111 1111 122
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 213 p~lllLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+ .|+|+|+.....+.++++++.. +|. ||++.+||.. ..+||++..|.+|+++..++..+
T Consensus 274 ~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 274 PP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 22 3789999999999999999974 575 9999999964 37899999999999999987654
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=149.40 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh
Q 010936 191 HLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~----------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~ 260 (497)
.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+...|++|+|+||++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 467899999999999999986 7999999999999999999999999999987899999999996 67889
Q ss_pred cCCeEEEeeCC
Q 010936 261 LFDRLYLLSGG 271 (497)
Q Consensus 261 ~~D~v~~L~~G 271 (497)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-12 Score=139.07 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 193 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+.+||||+|||+||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+||++||+| .+..+||+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3579999999999999997 5899999999999999999999999999965 69999999997 366899999999
Q ss_pred eCC
Q 010936 269 SGG 271 (497)
Q Consensus 269 ~~G 271 (497)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 865
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=147.90 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=64.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+.|.++|++||++ ......+|+..++ +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence 346999999999999988 8999999999999999999998865 5777777789999999994 3334445554443 4
Q ss_pred CeEEE
Q 010936 271 GKTVY 275 (497)
Q Consensus 271 G~iv~ 275 (497)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 55554
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=119.44 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=93.0
Q ss_pred EEeCCeEEEEECCCCChHHHH-HHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 78 YAEPGTLTALMGPSGSGKSTL-LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTL-L~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
-+++|++++|.|+|||||||| ++++++..+++ ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 378999999999999999999 78888765432 123455532 25555555543322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSA 228 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgL----D~~ 228 (497)
. . +++.... +. ...-.+ . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~----~-------~~~~~~~-~~--l~~~~~---~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y----D-------INKKLIS-GK--LLYIPV---Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C----c-------hHHHhhc-Cc--EEEEEe---c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 1 1111111 10 000000 1 136777665555444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCCh------HHHhcCCeEEEee
Q 010936 229 AAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~------~i~~~~D~v~~L~ 269 (497)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998878887776654210 1234567777765
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=140.64 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.7
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 191 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~----------~~p~lllLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 34689999999999999987 599999999998 789999999999999998 589999999995 356
Q ss_pred hcCCeEEEeeC-CeE
Q 010936 260 ELFDRLYLLSG-GKT 273 (497)
Q Consensus 260 ~~~D~v~~L~~-G~i 273 (497)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 544
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=130.94 Aligned_cols=137 Identities=24% Similarity=0.377 Sum_probs=104.7
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH------HHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 010936 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVER------TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 212 (497)
+..|++.+.+.|...+.+... ........+.+ .|..+||.-. .++. ..+|||||.||+-||..+-.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhccc
Confidence 356788888888876653221 11111111222 3445677543 3433 347999999999999999765
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHHH
Q 010936 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (497)
Q Consensus 213 p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (497)
= =+++||||+.||-+..-..+++.|++|++.|-|+|++.||+ +....+|+|+-| ..|+|++.|++++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 3 46899999999999999999999999999999999999994 678899999998 5789999999999874
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-11 Score=111.99 Aligned_cols=145 Identities=26% Similarity=0.247 Sum_probs=96.5
Q ss_pred EEEEECCCCChHHHHHHHHHc-CCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G-~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 162 (497)
++.|.||+|+|||||.--++- ... +| ..+.|+.=+ .|..+.+.....+. +.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-----------~g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-----------RG-------EPGLYVTLE------ESPEELIENAESLG----WD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-----------CC-------CcEEEEECC------CCHHHHHHHHHHcC----CC
Confidence 367999999999998865541 111 11 234455422 25555554443321 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHH
Q 010936 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFV 233 (497)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD---~~~~~~i 233 (497)
. ++ +...|+....+. .+..+|+|++| +.........+|+++++|||++.+| ......+
T Consensus 53 ~-------~~-l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i 119 (187)
T cd01124 53 L-------ER-LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI 119 (187)
T ss_pred h-------HH-HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH
Confidence 1 11 222343333332 44578999998 4555555677999999999999999 8888888
Q ss_pred HHHHHHHHhCCCEEEEEeCCCCh--------HHHhcCCeEEEee
Q 010936 234 TQTLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (497)
Q Consensus 234 ~~~L~~l~~~g~tvI~~tH~~~~--------~i~~~~D~v~~L~ 269 (497)
.+.++.+++.|.|+|+++|+... .+..+||.|+.|+
T Consensus 120 ~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 120 RRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 99999998889999999998542 2678899999886
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=116.64 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=87.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+-+|+++..++|++++|.||||+||||+++++++..--. ..| .........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999998653110 011 111000011111 122222222222
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
++..+. +.+ ..|-++++-....+.+|+++|+|||.+|+|+
T Consensus 85 ~~~~~~---------------------------------------StF-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKGE---------------------------------------STF-MVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccCc---------------------------------------chH-HHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 221110 001 1234444444445578999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 010936 228 AAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 228 ~~~~~i~~~-L~~l~~~-g~tvI~~tH~~ 254 (497)
.....+... ++.+.+. +.++|++||+.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 999998887 7777775 89999999995
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=117.44 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=53.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 192 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
...+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-||++||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 3457999999999999988776 89999999999999999999999988876678999999996
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-12 Score=116.67 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 45999999999999999999999999995 44444 345666666666789999999983 46678999999999
Q ss_pred CeEEEE
Q 010936 271 GKTVYF 276 (497)
Q Consensus 271 G~iv~~ 276 (497)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998665
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-11 Score=137.13 Aligned_cols=77 Identities=31% Similarity=0.327 Sum_probs=68.5
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCe
Q 010936 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 191 ~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
.+..|||||++ |++||++++.+|+++||||||+|||+..+..+.+.|..+...+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 45689999999 55566678899999999999999999999999999999877788999999995 46789999
Q ss_pred EEEee
Q 010936 265 LYLLS 269 (497)
Q Consensus 265 v~~L~ 269 (497)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99997
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=136.25 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=69.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 191 HLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~--------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
.+.+|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||+++||.. .....+-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 567899999999999999996 8999999999999999999999999999988899999999984 4455566
Q ss_pred CeEEEeeC
Q 010936 263 DRLYLLSG 270 (497)
Q Consensus 263 D~v~~L~~ 270 (497)
.+|.|-+.
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=120.89 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=117.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC---------
Confidence 55556665553 235688885 999999999999999999999999999998775 6766655542
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL- 210 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~- 210 (497)
..+|.|.+..... .-|+... ..+ ....+-|.|+|+|+..+.+.+
T Consensus 194 ----------g~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 194 ----------GREVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred ----------cccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHH
Confidence 1366666543211 1122110 011 133568999999999998888
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 211 ------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 211 ------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
.++-++++|+||...|+. .++...+.+.-..|.+..+.+|. ..+.+-+ -...+|.+...+..
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~ERa---g~~~~GSiT~~~tv 306 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLERS---GKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHHHh---ccCCCcceEEEEEE
Confidence 789999999999999996 56666666665458888888885 2344444 44578887665543
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=137.64 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=65.2
Q ss_pred cccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 010936 184 DTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIH 252 (497)
Q Consensus 184 ~~~vg~~~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~tH 252 (497)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55554 33579999999 99999999999999999999999999999999999988732 3789999999
Q ss_pred CCChHHHhcC
Q 010936 253 QPSSEVFELF 262 (497)
Q Consensus 253 ~~~~~i~~~~ 262 (497)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 95 5677665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=117.27 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=95.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CCC-cCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KLS-FGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
+++.++.|+.++|.||+|||||||+++|++.+++. .|.+.+..... ... ...+.++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~--~----------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG--Q----------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--C-----------
Confidence 55778899999999999999999999999998775 67677653211 110 011121111000 0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~ 232 (497)
+ ...++- .-.++.+|-.+|+++++|||.+ .+
T Consensus 201 -------------------------~-------------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 201 -------------------------G-------------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------C-------------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 000111 1134456778999999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 233 i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+++.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56677766543446799999964 66779999999999988888877654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=124.08 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=60.7
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH---------hcCCeEEEeeCCeEEEEeCc
Q 010936 210 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 210 ~~~p~lllLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~---------~~~D~v~~L~~G~iv~~G~~ 279 (497)
..+|.++++|||+.+| |+..+..+.+.++.+++.|.++|++||++. ++. +.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999888999999999974 443 68999999999998766643
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-10 Score=99.93 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
.+.++.++...+++...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888899999999999999994 455555666666666665569999999998643
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=130.80 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=66.9
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEeCCCChHHHhc
Q 010936 191 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL 261 (497)
Q Consensus 191 ~~~~LSgGerqRv~I------A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvI~~tH~~~~~i~~~ 261 (497)
.+..|||||++|++| |++++.+|++++|||||+|||+.....+.++|+... .. | .+||++||++ .....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 467899999999975 589999999999999999999999999999998644 33 3 4899999995 35689
Q ss_pred CCeEEEee
Q 010936 262 FDRLYLLS 269 (497)
Q Consensus 262 ~D~v~~L~ 269 (497)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=99.00 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G 271 (497)
...|-||-=---+.+. .++.-++|||||-++|.|.-+.+++..|+++++.|.-+||.||.|. +..+ --.|+-++.+
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~~~~~~ 204 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIYEISES 204 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEEEEecC
Confidence 4568888654334333 4577899999999999999999999999999999999999999974 3332 2345555544
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-10 Score=132.43 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.1
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
.+..|||||++|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 56789999999999999984 67799999999999999999999999999865 478999999964 457899998
Q ss_pred Eee
Q 010936 267 LLS 269 (497)
Q Consensus 267 ~L~ 269 (497)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=98.83 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=98.7
Q ss_pred ceeece-EEEEeCCeEEEEECCCCChHHHHHHHHH-cCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS-SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L~-G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.-|+.+ .+=+++|.++.|.|++|+|||||...++ +.... | ..+.|+..+. +..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----------g-------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-----------G-------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-----------C-------CEEEEEEcCC------CHHH
Confidence 345554 5669999999999999999999998875 11111 1 2355665532 3333
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC-
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEPTSG- 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~p~lllLDEPTsg- 224 (497)
.+.-...+- +.. .+.+. .|.-...+..+. .....|.++.+.+..+..++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 333222211 110 11110 011111111111 112357788999999999997 9999999999964
Q ss_pred --CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh------HHHhcCCeEEEee
Q 010936 225 --LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (497)
Q Consensus 225 --LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~------~i~~~~D~v~~L~ 269 (497)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 45555556666677767778999999998532 1456677777776
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-09 Score=122.95 Aligned_cols=77 Identities=30% Similarity=0.363 Sum_probs=66.7
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCChHH
Q 010936 192 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 258 (497)
Q Consensus 192 ~~~LSgGerq------Rv~IA~aL~~~-----p-~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvI~~tH~~~~~i 258 (497)
+..||||||+ |++||++++.+ | +++||||||++||+.....+.++|..+...|. +||++||++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999998864 3 67999999999999999999999999976664 899999996 34
Q ss_pred HhcCCeEEEeeC
Q 010936 259 FELFDRLYLLSG 270 (497)
Q Consensus 259 ~~~~D~v~~L~~ 270 (497)
...||+++.|..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-09 Score=126.33 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=68.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
.+..||||||++++||++|+. +|+++|||||+++||+.....+.++|+++++ +..+|++||++ ....+||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 47899999995 4678999999
Q ss_pred Eee
Q 010936 267 LLS 269 (497)
Q Consensus 267 ~L~ 269 (497)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 875
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=100.31 Aligned_cols=135 Identities=30% Similarity=0.457 Sum_probs=84.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC-EecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G-~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
|.+..|+||+|+|||||+-.++=-.. +|.=.+.+ ... .....+.|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67889999999999999887762221 22211111 111 1123455554322
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS- 223 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~----------------aL~~~p~lllLDEPTs- 223 (497)
+..+..+++..+...+++.+..+..+ ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233455666666666544333322 2245555554443 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCC
Q 010936 224 -----GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 224 -----gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~ 254 (497)
.+|+.....+++.|++++++ |.+||+++|..
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999874 99999999985
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.4e-09 Score=98.44 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+|+++|..+|+++++|||. |..+...++ +.+..|..++.++|.++ .....||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 655433333 34567999999999964 457789987764
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=111.09 Aligned_cols=151 Identities=22% Similarity=0.292 Sum_probs=95.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
.++++.+..+..|++++++||||+||||++..|++.+... .|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777788899999999999999999999999876432 231 2578888875 457899999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR-RVSIALEILMRP-----RLLFLDEPTS 223 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~IA~aL~~~p-----~lllLDEPTs 223 (497)
.+.+.... ++........+..+...++.+.....|. +.+.+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 99877542 1111111223344455667665444443 32222322 234445555555 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 010936 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIH 252 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~tH 252 (497)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 8 3345555555555665555555
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-09 Score=113.68 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=44.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-EEEECCEec
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKT 123 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G-~I~~~G~~~ 123 (497)
..+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6777774 56 899999875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-07 Score=79.56 Aligned_cols=118 Identities=32% Similarity=0.431 Sum_probs=76.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
++..+.|.||+|+||||+++.|+..+.... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 367899999999999999999998876530 1344444322110 0000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ----- 235 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~----- 235 (497)
..... .......+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 -------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIVG-----------GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhhh-----------ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 00000 0112467888888888888888899999999999999988887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 010936 236 -TLRCLSRDGRTVIASIH 252 (497)
Q Consensus 236 -~L~~l~~~g~tvI~~tH 252 (497)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22223335788999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-08 Score=105.45 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=107.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----------CCcCcEEEEcCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----------LSFGTAAYVTQD 136 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-----------~~~~~i~yv~Q~ 136 (497)
...+|+++ +++.+|+.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..++|++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998775222355555554321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH-HHHHHHHHhCCCE
Q 010936 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEILMRPRL 215 (497)
Q Consensus 137 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~IA~aL~~~p~l 215 (497)
...+..+++.+++.+.+......+. ++|- ..|..- .--+-+| +++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~----------~Vll------~~Dslt--------r~a~A~REisl---------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGH----------DVLL------LVDSLT--------RYAMAQREIAL---------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccC----------CEEE------eecchh--------HHHhhhhHHHH----------
Confidence 9999999999999887664311110 0000 001000 0001111 111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh-C--C-CEEEEEeCCCChHHH-hcCCeEEEeeCCeEEEE
Q 010936 216 LFLDEP--TSGLDSAAAFFVTQTLRCLSR-D--G-RTVIASIHQPSSEVF-ELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 216 llLDEP--TsgLD~~~~~~i~~~L~~l~~-~--g-~tvI~~tH~~~~~i~-~~~D~v~~L~~G~iv~~ 276 (497)
.+-|| +.|-.+.--..+-+++.+... + | .|.+.+..-+.+++. -++|.+.-+-+|+++..
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12343 336777766777777776532 2 2 466666554333222 25777777889999874
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-08 Score=110.16 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=96.9
Q ss_pred ceeece-EEEEeCCeEEEEECCCCChHHHHHHHH--HcCCCCCCCceeEEEECCEecC----CCcCcEEEEcCCCCCCCC
Q 010936 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILLNGHKTK----LSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L--~G~~~~~~~~~G~I~~~G~~~~----~~~~~i~yv~Q~~~l~~~ 142 (497)
.-|+.+ .+=+.+|.++.|.|++|||||||..-. .|....+ +.-+++...... ...+..||-.++..--..
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~ 84 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGK 84 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCc
Confidence 346664 567899999999999999999998866 3544322 333444332210 001122322221000000
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH--HHHHhCCCEEEEeC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDE 220 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~p~lllLDE 220 (497)
+.+ .. .... .....+++.+++.+..+... ..+|+|++|||.|+ .+|...|+..
T Consensus 85 ------l~~---~~----~~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~---- 139 (484)
T TIGR02655 85 ------LFI---LD----ASPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV---- 139 (484)
T ss_pred ------eEE---Ee----cCch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch----
Confidence 000 00 0000 00111233344444444433 46999999999999 6666665443
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH-------H-HhcCCeEEEee
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELFDRLYLLS 269 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~-------i-~~~~D~v~~L~ 269 (497)
...+..++++++.+++.|.|+|+++|++... + ..+||.|+.|+
T Consensus 140 ------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999985310 2 55899999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-08 Score=101.68 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 193 RGISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~---------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
..+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|... |.+|++++|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999754 67999999985
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-07 Score=110.53 Aligned_cols=78 Identities=36% Similarity=0.420 Sum_probs=70.0
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 191 HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~------~~--p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|+||||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887775 35 599999999999999999999999999988899999999994 688999
Q ss_pred CeEEEeeC
Q 010936 263 DRLYLLSG 270 (497)
Q Consensus 263 D~v~~L~~ 270 (497)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=100.99 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=54.6
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh--cCCeEEEeeCCeEE
Q 010936 205 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 274 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~--~~D~v~~L~~G~iv 274 (497)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++. ++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677788999999999999999 799999999999999888999999999974 4544 23444333444443
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-08 Score=92.43 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=64.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc-CCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMP 162 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~-~~~~~~ 162 (497)
+++|.||||||||||.++|++.+. .|.+ .++++++.. ..++..+......... .+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~--------------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKV--------------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCe--------------EEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 589999999999999999998862 2222 233333322 1222222222111111 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
.....+.+..+...+..+.+ ....|.|++++..+ .+.+|+++|+|.|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12334555555544333332 34578888776555 5788999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-07 Score=89.07 Aligned_cols=81 Identities=23% Similarity=0.234 Sum_probs=59.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CC-CcCcEEEEcCCC--CCCCCCCHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL-SFGTAAYVTQDD--NLIGTLTVR 146 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~-~~~~i~yv~Q~~--~l~~~lTV~ 146 (497)
..+=+.+.+++|+.++|+||||||||||+++|+|++++. .|.|.+.+... .. ....++++.|.+ ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455678899999999999999999999999999875 79999987542 11 123456655543 345667888
Q ss_pred HHHHHHhh
Q 010936 147 ETISYSAR 154 (497)
Q Consensus 147 e~l~~~~~ 154 (497)
+.+..+.+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 87776654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=98.41 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCe
Q 010936 194 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
-+|+||+|++.||..|+ .+|++++||||+++||+..+..+.+.|... ..++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCC-----CCCCce
Confidence 57999999999999999 899999999999999999999999888653 2355555543 357999
Q ss_pred EEEeeCCeEE
Q 010936 265 LYLLSGGKTV 274 (497)
Q Consensus 265 v~~L~~G~iv 274 (497)
++.+.+|++.
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999998764
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=95.77 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8887765444 3457999999999853 45667777655
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.6e-08 Score=94.00 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.4
Q ss_pred eeece-EEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 71 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
-|+.+ .+=+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 4679999999999999999999988654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-07 Score=98.06 Aligned_cols=84 Identities=24% Similarity=0.229 Sum_probs=66.9
Q ss_pred CceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ec
Q 010936 47 DVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KT 123 (497)
Q Consensus 47 ~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~ 123 (497)
.++..++.++++..+. ....+++.++ .+.+|+.++|+||||+||||||++|+++.+++ .|.|.+.|+ +.
T Consensus 135 ~~p~~~~r~~v~~~l~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev 206 (450)
T PRK06002 135 TAPPAMTRARVETGLR----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREV 206 (450)
T ss_pred CCCCCeEeecceEEcC----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccH
Confidence 3445688899998885 2367899886 99999999999999999999999999998875 799988653 32
Q ss_pred C---------CCcCcEEEEcCCCC
Q 010936 124 K---------LSFGTAAYVTQDDN 138 (497)
Q Consensus 124 ~---------~~~~~i~yv~Q~~~ 138 (497)
. .+.+.+++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 1 12356899999764
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-07 Score=106.51 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=87.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..+-+|+++. ..+.++.|.|||++||||+|+.++-..--. ..| +|||-...- +++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a~---i~~~-- 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESAR---IGIV-- 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------CceeccceE---eccc--
Confidence 3466788887 677899999999999999999986321000 011 234432211 1111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCC---CC
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEP---TS 223 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~p~lllLDEP---Ts 223 (497)
+.++.++|-. |. ...++|-=+.....++..|-. +++++|+||| |+
T Consensus 651 ----------------------d~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 651 ----------------------DRIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ----------------------CeeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1111112221 11 113577777777777776654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCe
Q 010936 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~ 264 (497)
.+|..+ ..+..++.+.+. |.++|++||. .++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 888444 455566666665 6899999999 367778775
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=90.70 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=107.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------------CcCcEEEEc
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------------SFGTAAYVT 134 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-------------~~~~i~yv~ 134 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.+...|..... ..+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 999999999999999999999999999998775 6777766653110 012233333
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHHhCC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRP 213 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~~~p 213 (497)
+.+. ++.+-..-+. .--.+.+.+...|- |..+ ....|+- -|-+| .|+
T Consensus 226 ~~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-Eis------- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-EIG------- 273 (440)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-HHH-------
Confidence 3221 1211111000 00112222322332 1111 0111221 11122 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 214 RLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGR-------TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 214 ~lllLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||.. .-++|++..+.+|+++......+
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234565 559999999999999999876666 8888899853 45789999999999999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-07 Score=94.70 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=63.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceee--------
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLE-------- 73 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~-------- 73 (497)
++.++++|+++++..+++-.. .+ ....-.+.|+||++.|+. .+.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~------~~---------------e~~~~ri~Fe~LTf~YP~----er~~Le~~~~~~~~ 156 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD------DP---------------EKAKNRVLFENLTPLYPN----ERLRLETSTEDLST 156 (415)
T ss_pred eccccHhHHHHHhCCCccCCC------Cc---------------cccCCCeEEEEeeecCCC----ccceeecCccccce
Confidence 456789999999988776321 00 011224999999999952 346786
Q ss_pred ---ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 74 ---GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 74 ---~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
|+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999987654
|
Members of this family differ in the specificity of RNA binding. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-07 Score=105.71 Aligned_cols=164 Identities=21% Similarity=0.316 Sum_probs=89.5
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
.=+++..+.+++++|+|++|+|||||++.+.+.+... ..|.+++++........ .+-.++... .+...
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH-
Confidence 3356778889999999999999999999998766542 47888887532111000 010110000 00000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~ 232 (497)
...++.+.+++...++. + ..+ ++.|+| |...+-+++||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~-----~~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------I-----YHL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------c-----CCH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 00112233344333331 1 112 556665 3355667888984 433 3
Q ss_pred HHHHHHHHH---hCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEeCchhHHHHHHhcCC
Q 010936 233 VTQTLRCLS---RDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291 (497)
Q Consensus 233 i~~~L~~l~---~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 291 (497)
.++.|.... ..|.+||+|||+. ..+... +|+++.+.. -+.++..+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 345554432 3488999999994 333333 677666531 134566777766433
|
syringae 6; Provisional |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.3e-07 Score=108.98 Aligned_cols=61 Identities=30% Similarity=0.398 Sum_probs=53.7
Q ss_pred ccCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 191 HLRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 191 ~~~~LSgGerqRv~----IA~a--------L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...++++|.++ |.++|++||..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 35789999999996 5644 55899999999999999999999999999888 78999999873
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=91.36 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 208 EILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88999999999999888999999999973
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-05 Score=77.18 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578898889999999999999999999999887643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.1e-07 Score=84.61 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=43.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----cCcEEEEcCCCCCCCCCCHHHHHHH
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTLTVRETISY 151 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~ 151 (497)
+|++++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998765 46677653211 1123555665444444555555444
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=89.04 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=70.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ecC--------CCcCcEEEE---
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK--------LSFGTAAYV--- 133 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~--------~~~~~i~yv--- 133 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. ......+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999987432 2477877663 221 011234555
Q ss_pred --cCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 010936 134 --TQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (497)
Q Consensus 134 --~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (497)
+|++. +.+.+ +...+.-..+.+........+...++.++++.++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88753 33433 444443333222111112345567788889888884
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=66.46 Aligned_cols=37 Identities=49% Similarity=0.737 Sum_probs=30.2
Q ss_pred eeceEEEEeC-CeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 72 LEGLTGYAEP-GTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 72 L~~vs~~i~~-Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.++.++++.+ |.++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777876 569999999999999999999766544
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.7e-06 Score=75.87 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI-----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL-----~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
.+.+++...+..- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666555321 11222 2345789988887666553 2345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=87.06 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=58.1
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec--CCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT--KLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~--~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
++.+.-.+++|++++|+|+||+|||||+++|+|...+. +|+|.+++... ....+.+.+++|...++.+ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 55555667899999999999999999999999998875 89999987532 1223568899998877764 444444
Q ss_pred HH
Q 010936 150 SY 151 (497)
Q Consensus 150 ~~ 151 (497)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 43
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-06 Score=80.61 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC-hHHHhcCCeEEEeeC
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS-SEVFELFDRLYLLSG 270 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~-~~i~~~~D~v~~L~~ 270 (497)
.|+-+|..||..+..+|+.+..+| +.+||.....+.+.+.+...+|.+||+.+|.+. ..+..+||.+++++.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 478899999999999999988777 889999999999999888666789999999863 136778999988753
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-06 Score=89.16 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCCh-------HHHhcCCeEEEeeCCe
Q 010936 211 MRPRLLFLDEPTSGL----D-----SAAAFFVTQTLRCLSR-DGRTVIASIHQPSS-------EVFELFDRLYLLSGGK 272 (497)
Q Consensus 211 ~~p~lllLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~-------~i~~~~D~v~~L~~G~ 272 (497)
.+|+++++|.-++=. + .....+++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2334566667777766 59999999996432 1567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=68.25 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCC
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQP 254 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~tH~~ 254 (497)
+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++..
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 444445566778999999998765 56667778888877643 467889998864
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.1e-06 Score=68.71 Aligned_cols=49 Identities=39% Similarity=0.512 Sum_probs=37.2
Q ss_pred ccCCCCHHHHH-HHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010936 191 HLRGISGGERR-RVSIALEIL------M------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (497)
Q Consensus 191 ~~~~LSgGerq-Rv~IA~aL~------~------~p~lllLDEPTsgLD~~~~~~i~~~L~~ 239 (497)
...++|||||| .+.+|.+++ . .|.+++||||+++||+.....++++|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 34579999994 444444332 2 3799999999999999999999999874
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.4e-05 Score=85.49 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=41.8
Q ss_pred HhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 210 LMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 35899999999999999 78899999999999888999999999963
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.9e-05 Score=77.69 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHh-CCCEEEEEeCCCChH
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL-----DSAAAFFV----------TQTLRCLSR-DGRTVIASIHQPSSE 257 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvI~~tH~~~~~ 257 (497)
.=||-.-|=..|..||=...++||+||=||+- |...+..+ ++.++.|.+ .|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999975 44444444 566777755 58887777765 578
Q ss_pred HHhcCCeEEEeeCCeE
Q 010936 258 VFELFDRLYLLSGGKT 273 (497)
Q Consensus 258 i~~~~D~v~~L~~G~i 273 (497)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999987554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-05 Score=71.09 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 010936 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS--IALEILM-RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (497)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--IA~aL~~-~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (497)
.+.++++..++.- -.+++ +...+|+|+++++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445566555531 12222 33458999999987 5555443 34443 99999999999999999887664
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-06 Score=87.56 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=55.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---------CCcCcEEEEcCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---------LSFGTAAYVTQDDN 138 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---------~~~~~i~yv~Q~~~ 138 (497)
...+++++ +.+.+||.++|+|+||+|||||+++|++...++..+-|.|-.+|.+.. ...+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35799999 999999999999999999999999999998776334589999998632 12246777766543
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=89.23 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCC-----CceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH--HHHHHHh
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR--ETISYSA 153 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-----~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~--e~l~~~~ 153 (497)
..+.++|+||||+|||||+++|.+..++.. ...+-|.+||..... ..+ .+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcCC
Confidence 345799999999999999999998765320 012234555432110 011 1111110
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 010936 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (497)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i 233 (497)
.. ......+.+.++..|+.+..+..+ ..+||| +||||| +..||+..+..+
T Consensus 236 -------~~-~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------VH-DPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------cc-HHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 11 111223455677788876665544 468888 999999 799999999999
Q ss_pred HHHHHH
Q 010936 234 TQTLRC 239 (497)
Q Consensus 234 ~~~L~~ 239 (497)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=4e-05 Score=84.30 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=49.5
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------------CCChHHHhcCCeEEEeeCCeE
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------------QPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------------~~~~~i~~~~D~v~~L~~G~i 273 (497)
|..+|+++++||.-..-| ++++..++..|..++.|.| +. ..+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 678999999999985332 4445455556888999999 64 467789999999999999
Q ss_pred --EEEeCch
Q 010936 274 --VYFGETS 280 (497)
Q Consensus 274 --v~~G~~~ 280 (497)
++.+...
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7776643
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=77.43 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=34.1
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCC
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSR-DGRTVIASIHQP 254 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~-L~~l~~-~g~tvI~~tH~~ 254 (497)
+.+..++|+||+..|=++.....+... ++.+.+ .+..+|++||..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 346789999999999999998877654 555776 488999999994
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.4e-05 Score=71.69 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=44.1
Q ss_pred hCCCEEEEeCC-----CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC--------hHHHhcCCeEEEee
Q 010936 211 MRPRLLFLDEP-----TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS--------SEVFELFDRLYLLS 269 (497)
Q Consensus 211 ~~p~lllLDEP-----TsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~--------~~i~~~~D~v~~L~ 269 (497)
.+++++++|=. +.+.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 36889999932 2345566677888899998888999999999621 22567899999985
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.8e-06 Score=79.87 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++|++++|.||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999998865
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.3e-06 Score=80.38 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=46.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeE----EEECCEecCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT----ILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~----I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
.+..++||.||||||||||++.|++.+++. +|. |.+++..... .....+++++.+ .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456799999999999999999999999875 676 5555432111 112345665533 3345566665555443
Q ss_pred c
Q 010936 155 L 155 (497)
Q Consensus 155 ~ 155 (497)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.6e-06 Score=86.59 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=53.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
.++.++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECCC
Confidence 456666666663 346799999 999999999999999999999999999998875 6888777753
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=82.53 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=44.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+..-|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 36699999 999999999999999999999999999998875 677777664
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=82.06 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=41.8
Q ss_pred hCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCC-------hHHHhcCCeEEEeeCC
Q 010936 211 MRPRLLFLDEPTS----GLD-----SAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (497)
Q Consensus 211 ~~p~lllLDEPTs----gLD-----~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~-------~~i~~~~D~v~~L~~G 271 (497)
.+|+++++|+-.+ .+| .....++...|.++++ .|.|+|++.|-.. ..+..++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4899999999643 333 2334455666777766 5899999988522 1357789999988643
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=79.35 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++|.+++|.||+||||||+|++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999874
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.9e-06 Score=83.93 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=47.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEec---CC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKT---KL-SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~---~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
-.++||.||||||||||+++|.+++. +. +|.|.+-+.+. .. ..+..++. |+..+++.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~---~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPE---HRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCC---CCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 36999999999999999999999886 33 57766644431 11 11223433 555666777887777776554
Q ss_pred c
Q 010936 156 R 156 (497)
Q Consensus 156 ~ 156 (497)
+
T Consensus 138 k 138 (290)
T TIGR00554 138 K 138 (290)
T ss_pred H
Confidence 3
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.4e-06 Score=84.33 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=51.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----------CcCcEEEEcCCCCCCCCCCHHHH
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
++|++++++||||+||||++..|++.+.+. .|+|.+.+.+... ....+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 578999999999999999999999998763 5789887765311 12347788886555555566666
Q ss_pred HHHH
Q 010936 149 ISYS 152 (497)
Q Consensus 149 l~~~ 152 (497)
+..+
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 6544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 497 | ||||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-15 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-14 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-14 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-13 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-13 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-13 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-13 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 9e-13 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-12 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-12 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-12 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-12 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-12 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-12 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-12 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-12 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-12 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-11 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-11 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-11 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-11 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-11 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-11 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-11 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 9e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-10 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-10 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-09 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-08 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-07 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 8e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 7e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 5e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-04 | ||
| 3qf7_A | 365 | The Mre11:rad50 Complex Forms An Atp Dependent Mole | 6e-04 |
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair Length = 365 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-34
Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 44/243 (18%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++++ L + L L+G G + L+GP+G+GKSTLL ++ + G+I
Sbjct: 2 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQ 57
Query: 118 LNGHKTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G + ++ AY++Q V ++ + L+
Sbjct: 58 FAG-QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-------DK-TRTELLN 108
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-------LEILMRPRLLFLDEPTSG 224
+ L D +SGGE +RV +A + +LL LDEP +
Sbjct: 109 DVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL------FDRLYLLSGGKTVYFGE 278
LD A + + L LS+ G ++ S H +L R +LL GGK + G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH-------DLNHTLRHAHRAWLLKGGKMLASGR 216
Query: 279 TSA 281
Sbjct: 217 REE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-34
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ + + + L G + A++G +G GKSTLLD L + G I +
Sbjct: 10 LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEV-- 64
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISY--SARLRLPDKMPWSEK-RTLVERTIIEM 177
+ + +V Q + +V + + S + K + + + +
Sbjct: 65 ------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK--PKSHDYQVAMQALDYL 116
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L A + +SGG+R+ + IA I +L+ LDEPTS LD A V L
Sbjct: 117 NLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171
Query: 238 RCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
L++ TV+ + HQP+ V + ++ LL+ FGET
Sbjct: 172 IDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQN-FKFGETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH------- 121
+L+G++ E G + L+GP+G+GK+T L +S+ + + SG + + G
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 122 KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
+ + Y+ ++ + E + + A SE +VER GL +
Sbjct: 85 EVRKLIS---YLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGE 138
Query: 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+ + S G R++ IA +++ PRL LDEPTSGLD A V + L+ S
Sbjct: 139 KIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++G T++ S H EV L DR+ L+ G V G
Sbjct: 194 QEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-31
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 24/209 (11%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL 125
VLE +T E G + GP+G GK+TLL +S+ L G I+ NG K K
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
++ ++ + ++V + + A L + ++ + + + + D
Sbjct: 79 KIF---FLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNE--IMDALESVEVLDLKKK 130
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ +S G RRV +A +L+ + LD+P +D + V +++ + ++
Sbjct: 131 L------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTV 274
VI S S E D L T
Sbjct: 185 IVIIS----SREELSYCDVNENLHKYSTK 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-29
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 30/239 (12%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ +L+ ++ G L G +G+GK+TLL+ L++ + SGT+ L G
Sbjct: 27 IGRMKQGKT-ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFG 82
Query: 121 H---KTKLSFGTA----AYVTQD--DNLIGTLTVRETI-----SYSARLRLPDKMPWSEK 166
K S T +V+ + V + + + D E
Sbjct: 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD----EI 138
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R + + +G+ A IG +S GE++RV IA ++ +P++L LDEP +GLD
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 227 SAAAFFVTQTLRCLSRDGR--TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
A + L LS +I H E+ F ++ LL G+++ G
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKT 123
+ + L+G+ + G +TA++G +G GKSTL N L SG IL +
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNF------NGILKPSSGRILFDNKPI 72
Query: 124 KLSFGTAA-------YVTQ--DDNLIGTLTVRETISYSAR-LRLPDKMPWSEKRTLVERT 173
S V Q D+ L +V + +S+ A ++LP+ E R V+
Sbjct: 73 DYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPED----EIRKRVDNA 127
Query: 174 IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233
+ G++ D L S G+++RV+IA ++M P++L LDEPT+GLD +
Sbjct: 128 LKRTGIEHLKDKPT--HCL---SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 234 TQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ L + ++ G T+I + H V D ++++ G+ + G E FA+
Sbjct: 183 MKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK---EVFAEK 235
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 35/233 (15%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHKTKL 125
LE ++ G + G +GSGKSTLL + + SG +L +G + K
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIV------AGLIEPTSGDVLYDGERKKG 73
Query: 126 SF--GTAAYVTQ--DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181
Q +D V + ++++ + PD+ + LV++ + +GL
Sbjct: 74 YEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR----DPVPLVKKAMEFVGLDF 128
Query: 182 CADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ +SGGE+RRV+IA I+ P +L LDEP GLD + +
Sbjct: 129 --------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ G+TVI H V DR+ +L GK V+ G EF +
Sbjct: 181 VEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRM---EFLEKY 229
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 1e-23
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTIL 117
V + ++ +L ++ A+P ++ A GPSG GKST+ L R F +G I
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFS-LLER-----FYQPTAGEIT 60
Query: 118 LNGHK----TKLSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
++G + ++ + +V+QD ++ T+RE ++Y D+ W R
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 173 TIIEMGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
+ + + D +T +G RG+ SGG+R+R++IA L P++L LDE T+ LDS +
Sbjct: 120 SFV-ENMPDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 231 FFVTQTLRCLSRDGRT--VIA 249
V + L L + GRT VIA
Sbjct: 176 SMVQKALDSLMK-GRTTLVIA 195
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 2e-22
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 37/244 (15%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128
VL G + +MG +G+GK+TL+ L+ L + G + +
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKL-NVSMKPQ 420
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
A TVR+ R + + + + + D D
Sbjct: 421 KIAPKFPG-------TVRQLFFKKIRGQFLNPQ-------FQTDVVKPLRIDDIID---- 462
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTV 247
++ +SGGE +RV+I L + + + +DEP++ LDS ++ +R +T
Sbjct: 463 -QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 248 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCI 307
H L D++ + G + A L + FL+ +
Sbjct: 522 FIVEHDF-IMATYLADKVIVFEGIPSKN-AHARAPES-----------LLTGCNRFLKNL 568
Query: 308 NSDF 311
N F
Sbjct: 569 NVTF 572
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 27/212 (12%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNA--------------FLSGTILLNGHKTKL 125
PG + L+G +G GKST L L+ + N + G+ L N + TK+
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN-YFTKM 159
Query: 126 SFG--TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A Q + I L+L + + V+R I + L++
Sbjct: 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLEN-- 213
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + +SGGE +R +I + + + DEP+S LD Q +R L
Sbjct: 214 ---VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
+ VI H S + L D + ++ G +VY
Sbjct: 271 TKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 4e-22
Identities = 62/202 (30%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKTK- 124
VL+GLT PG +TAL+GP+GSGKST+ AL G +LL+G
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQN-----LYQPTGGKVLLDGEPLVQ 85
Query: 125 --LSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE---- 176
+ A V Q+ L G + RE I+Y L E I
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEE--------ITAVAME 132
Query: 177 -------MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227
G DT +G G SGG+R+ V++A ++ +PRLL LD TS LD+
Sbjct: 133 SGAHDFISGFPQGYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 228 AAAFFVTQTL-RCLSRDGRTVI 248
V + L RTV+
Sbjct: 190 GNQLRVQRLLYESPEWASRTVL 211
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-21
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 27/202 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLSFGTAAYVTQD-D 137
G ++GP+GSGK+TLL A+ + L SG I +NG + + Y T +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAI------SGLLPYSGNIFINGMEVRKIRNYIRYSTNLPE 82
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
+TV + + L+ + + L + I L +S
Sbjct: 83 AYEIGVTVNDIVYLYEELK-----GLDRDL--FLEMLKALKLGE----EILRRKLYKLSA 131
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS 256
G+ V +L + +P ++ LDEP +D+A + ++ G+ I H+
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAA----RRHVISRYIKEYGKEGILVTHE-LD 186
Query: 257 EVFELFDRL-YLLSGGKTVYFG 277
+ + Y L G +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPI 208
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 4e-21
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 48/226 (21%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTL------LDALSSRLASNAFLSGTILLNGHKT- 123
+L+G++ + G +++G SGSGKSTL LDA + G + L G +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE---------GKVFLEGKEVD 69
Query: 124 KLS-----------FGTAAYVTQDDNLIGTLTVRETISYSARLRLP---DKMPWSEKRTL 169
+ G +V Q LI LT E + +P P E +
Sbjct: 70 YTNEKELSLLRNRKLG---FVFQFHYLIPELTALENVI------VPMLKMGKPKKEAKER 120
Query: 170 VERTIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
E + E+GL D +SGGE++RV+IA + P LLF DEPT LDSA
Sbjct: 121 GEYLLSELGLGDKLS------RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174
Query: 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
V ++ G +++ H+ E+ EL R + GK V
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHER--ELAELTHRTLEMKDGKVV 218
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 4e-21
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 45/209 (21%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGH 121
++ +L+ + + G + ++G SGSGKSTL L R F +G +L++GH
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQR-----FYIPENGQVLIDGH 71
Query: 122 ---KTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
++ V QD+ L+ ++ + IS + + ++ + +I
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLA-----------NPGMSVEK--VIY 117
Query: 177 -----------MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTS 223
L++ +T++G +G SGG+R+R++IA ++ P++L DE TS
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATS 174
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
LD + + + + + + GRTVI H
Sbjct: 175 ALDYESEHVIMRNMHKICK-GRTVIIIAH 202
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 6e-21
Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 41/284 (14%)
Query: 37 KEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKS 96
KE + + S D+ ++ W + + L G A+ G + ++GP+G GK+
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKT 308
Query: 97 TLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156
T L + ++ G++ +Y Q TV++ L
Sbjct: 309 TFARILVGEITAD---EGSVTPEKQI-------LSYKPQRIFPNYDGTVQQ------YLE 352
Query: 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216
K S E + L ++ ++ +SGGE +++ IA + L
Sbjct: 353 NASKDALSTSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLY 407
Query: 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI-HQPSSEVFELFDRLYLLSGGKTVY 275
LD+P+S LD + V + ++ ++R+ + V I H S + DR+ + G
Sbjct: 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKA 466
Query: 276 FGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLK 319
G ++ + + FLR + F + T +
Sbjct: 467 -GLATSPVTL-----------KTGMNEFLRELEVTFRRDAETGR 498
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 23/264 (8%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF------LSGTILLNGHKTKLSFGTAAYV 133
+ T+ ++G +G GK+T+L L+ + N +L ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193
+ + ++ + E S + + + + ++R + + + + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI---- 138
Query: 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
+SGG +R+ +A +L + D+P+S LD + + +R L + + VI H
Sbjct: 139 -LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDF-- 311
+ L D ++++ G +VY G S ++ + N +L N
Sbjct: 197 -LIVLDYLTDLIHIIYGESSVY-GRVSKSY-------AARVGINNFLKGYLPAENMKIRP 247
Query: 312 DKVKATLKGSMKLKFETSDDPLEK 335
D++K LK L K
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMK 271
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 6e-21
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 41/264 (15%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--- 111
+ L G VL L + G + ++GP+G+GKST + L+ +L N
Sbjct: 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN 79
Query: 112 LSGTILLNG--------HKTKLSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM 161
S ++ + KL G V + +LI + I + +
Sbjct: 80 DSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI---------ELL 130
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
+++ +E + + L++ + I + +SGGE +RV+IA +L F DEP
Sbjct: 131 KKADETGKLEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
+S LD + +R LS +G++V+ H + + L D ++++ G VY G S
Sbjct: 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV-LDYLSDIIHVVYGEPGVY-GIFSQ 243
Query: 282 AFEFFAQAGFPCPALRNPSDHFLR 305
RN + FLR
Sbjct: 244 PKGT-----------RNGINEFLR 256
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128
LE G + G + ++GP+G GK+T + L+ G I +
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDL-------- 347
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
T AY Q TV E +S +L + +G+ D D
Sbjct: 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDR--- 397
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTV 247
+ +SGGE +RV+IA +L + LDEP++ LD V++ +R L ++ +T
Sbjct: 398 --EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 248 I 248
+
Sbjct: 456 L 456
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-20
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTL------LDALSSRLASNAFLSGTILLNGHKT- 123
L+ + + G ++MGPSGSGKST+ LD + G + ++ KT
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---------GEVYIDNIKTN 70
Query: 124 KLS-----------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
L G +V Q NLI LT E + + M E+R
Sbjct: 71 DLDDDELTKIRRDKIG---FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 173 TIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+ L++ H +SGG+++RV+IA + P ++ D+PT LDS
Sbjct: 128 CLKMAELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 232 FVTQTLRCLSR-DGRTVIASIHQP 254
+ Q L+ L+ DG+TV+ H
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDI 206
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHK----TK 124
L+ + + GT AL+G +GSGKST+ L R F G I + G +
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAK-LLYR-----FYDAEGDIKIGGKNVNKYNR 88
Query: 125 LSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE------- 176
S + V QD L T++ I Y K + +I+
Sbjct: 89 NSIRSIIGIVPQDTILFNE-TIKYNILYG-------------KLDATDEEVIKATKSAQL 134
Query: 177 ----MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
L DT++GN +G+ SGGER+R++IA +L P+++ DE TS LDS
Sbjct: 135 YDFIEALPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 231 FFVTQTLRCLSRDGRT--VIA 249
+ + + L + RT +IA
Sbjct: 192 YLFQKAVEDLRK-NRTLIIIA 211
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-20
Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 30/218 (13%)
Query: 32 SETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPS 91
I K++ + + + L LE G G + ++GP+
Sbjct: 338 PYEIRFTKLSERVDVERETLVEYPRL------VKDYGSFKLEVEPGEIRKGEVIGIVGPN 391
Query: 92 GSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151
G GK+T + L+ G + + T AY Q TV E +S
Sbjct: 392 GIGKTTFVKMLAGVEEPT---EGKVEWDL--------TVAYKPQYIKAEYEGTVYELLSK 440
Query: 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211
+L + +G+ D D ++ +SGGE +RV+IA +L
Sbjct: 441 IDSSKLNS-------NFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLR 488
Query: 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+ LDEP++ LD V++ +R L +T +
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 6e-20
Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNG--------HKTKLSFG 128
+ G + ++GP+G+GK+T + L+ +L N S ++ + +L G
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
V + + + + + + ++ + + ++ E + E+ L++ D +
Sbjct: 175 EIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH 227
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+SGGE +RV+IA +L + F DEP+S LD V + +R L+ +G+ V+
Sbjct: 228 Q-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 249 ASIHQPSSEVFELFDRLYLL 268
H L +L
Sbjct: 283 VVEH-----------DLAVL 291
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 35/206 (16%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTIL 117
V S + L+ ++ PG AL+GPSG+GKST+L L R F SG I
Sbjct: 59 VHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFR-----FYDISSGCIR 112
Query: 118 LNGHK----TKLSFGTA-AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KR 167
++G T+ S + V QD L T+ + I Y R+ + E +
Sbjct: 113 IDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRY-GRVTAGN----DEVEAAAQA 166
Query: 168 TLVERTIIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+ I M + T +G RG +SGGE++RV+IA IL P ++ LDE TS L
Sbjct: 167 AGIHDAI--MAFPEGYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 226 DSAAAFFVTQTLRCLSRDGRT--VIA 249
D++ + +L + RT V+A
Sbjct: 222 DTSNERAIQASLAKVCA-NRTTIVVA 246
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-19
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSF-- 127
+L+GL + G AL+G SG GKST + L RL L G + ++G + ++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDP--LDGMVSIDGQDIRTINVRY 461
Query: 128 --GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE-------MG 178
V+Q+ L T T+ E I Y D +E+ + E M
Sbjct: 462 LREIIGVVSQEPVLFAT-TIAENIRYG----REDV-----TMDEIEKAVKEANAYDFIMK 511
Query: 179 LQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
L DT++G RG SGG+++R++IA ++ P++L LDE TS LD+ + V
Sbjct: 512 LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
L GRT I H+ S+ D + GG V G
Sbjct: 569 LDKARE-GRTTIVIAHRLST--VRNADVIAGFDGGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 5e-19
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 45/203 (22%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKTKL 125
VL+GL+ + G AL+G SG GKST++ L R F ++G++ L+G + K
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLER-----FYDPMAGSVFLDGKEIK- 1098
Query: 126 SFGTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE--- 176
V+Q+ L ++ E I+Y R + I+
Sbjct: 1099 QLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGD-----------NSRVVSYEEIVRAAK 1146
Query: 177 --------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
L D +T +G+ +G +SGG+++R++IA ++ +P +L LDE TS LD
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 227 SAAAFFVTQTLRCLSRDGRTVIA 249
+ + V + L GRT I
Sbjct: 1204 TESEKVVQEALDKARE-GRTCIV 1225
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-18
Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 49/214 (22%)
Query: 61 VTLS-NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTI 116
VT + G+ L ++ G AL+G SGSGKST+ + L +R F SG+I
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN-LFTR-----FYDVDSGSI 400
Query: 117 LLNGHKTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
L+GH + + A V+Q+ +L T+ I+Y+A +
Sbjct: 401 CLDGHDVR-DYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTRE---------- 448
Query: 171 ERTIIE-----------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLF 217
I + + DTVIG G +SGG+R+RV+IA +L +L
Sbjct: 449 --QIEQAARQAHAMEFIENMPQGLDTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
LDE TS LD+ + + L L + +T VIA
Sbjct: 504 LDEATSALDTESERAIQAALDELQK-NKTVLVIA 536
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 7e-18
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGH 121
G L + G AL+G SGSGKST+ L +R F G IL++GH
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIAS-LITR-----FYDIDEGHILMDGH 405
Query: 122 KTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+ + A A V+Q+ +L TV I+Y+ ++ + I
Sbjct: 406 DLR-EYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQ--------IE 451
Query: 176 E-----------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPT 222
E + + DT+IG G +SGG+R+R++IA +L +L LDE T
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 223 SGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
S LD+ + + L L + RT VIA
Sbjct: 509 SALDTESERAIQAALDELQK-NRTSLVIA 536
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-16
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 53/211 (25%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGH 121
N +L+ + E G A +G SG GKSTL++ L R F SG IL++GH
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPR-----FYDVTSGQILIDGH 403
Query: 122 ---KTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERT 173
G V QD+ L TV+E I R D+
Sbjct: 404 NIKDFLTGSLRNQIG---LVQQDNILFSD-TVKENILL-GRPTATDE------------E 446
Query: 174 IIE-----------MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDE 220
++E M L DT +G RG +SGG+++R+SIA L P +L LDE
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDE 503
Query: 221 PTSGLDSAAAFFVTQTLRCLSRDGRT--VIA 249
TS LD + + + L LS+ RT ++A
Sbjct: 504 ATSALDLESESIIQEALDVLSK-DRTTLIVA 533
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 36/205 (17%)
Query: 66 GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGH 121
G VL+G++ A G + +++G SGSGKST L + N FL G I++NG
Sbjct: 17 GGHE-VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI------N-FLEKPSEGAIIVNGQ 68
Query: 122 KTKLSFGTAAYVTQDD------------------NLIGTLTVRETISYSARLRLPDKMPW 163
L + D NL +TV E + + L +
Sbjct: 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSK 126
Query: 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223
+ R + + ++G+ + A HL SGG+++RVSIA + M P +L DEPTS
Sbjct: 127 HDARERALKYLAKVGIDERAQGKYPV-HL---SGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVI 248
LD V + ++ L+ +G+T++
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMV 207
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-15
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 33/245 (13%)
Query: 58 TVMVTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL 112
M+ + G VL+G+ + G + ++GPSGSGKST L L+ L F
Sbjct: 22 LQMIDVHQLKKSFGSLE-VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LL--EDFD 77
Query: 113 SGTILLNGHKTKLSFGTAAY-------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
G I+++G K V Q NL +TV I+ + K P +
Sbjct: 78 EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR--KWPREK 135
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+ ++GL+D A + +SGG+ +RV+IA + M P+++ DEPTS L
Sbjct: 136 AEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV-F--ELFDRLYLLSGGKTVYFGETSAA 282
D V ++ L+ +G T++ H E+ F E+ DR+ + GG + E
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTH----EMGFAREVGDRVLFMDGGYII---EEGKP 243
Query: 283 FEFFA 287
+ F
Sbjct: 244 EDLFD 248
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FL---SGTILLNGHK- 122
VL ++ +PG + ++G SG GK+TLL L A F SG I L+G
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCL-------AGFEQPDSGEISLSGKTI 68
Query: 123 TKLSFGTAAY------VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+ + Q+ L LTV I+Y K +++R +E +
Sbjct: 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLEL 125
Query: 177 MGLQDCADTVIGNWHLR---GISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
G+ + A R +SGG+++R ++A + P L+ LDEP S LD
Sbjct: 126 TGISELAG--------RYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 36/170 (21%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL------ASNAFLSGTILLNG---- 120
+ G++ G + L+GPSGSGK+T+L RL + G + + G
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTIL-----RLIAGLERPT----KGDVWIGGKRVT 80
Query: 121 ----HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
K + V Q+ L +TV + +S+ R + ++P E V +
Sbjct: 81 DLPPQKRNVGL-----VFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRF 132
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
M L+ A+ +SGG+++RV++A + RP++L DEP + +D
Sbjct: 133 MRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFL---SGTILLNGHK-TKL-----SFGTAAYVTQD 136
L+GP+G+GKS L L + + G + LNG T L G V QD
Sbjct: 28 VLLGPTGAGKSVFL-----ELIA-GIVKPDRGEVRLNGADITPLPPERRGIGF---VPQD 78
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
L L+V I+Y R + E+ V ++G+ D +S
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LS 128
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLD 226
GGER+RV++A ++++PRLL LDEP S +D
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAY-VT---- 134
G +T ++GP+GSGKSTL++ ++ L ++ G + +
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDIT---NKEPAELYHYGI 84
Query: 135 ----QDDNLIGTLTVRE-----------TISYSARLRLPDKMPWSEKRTLVER--TIIE- 176
Q + +TV E + S + ++ +VE+ I+E
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW----IPKEEEMVEKAFKILEF 140
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ L D G +SGG+ + V I ++ P+++ +DEP +G+ A +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 237 LRCLSRDGRTVI 248
+ L G T +
Sbjct: 196 VLELKAKGITFL 207
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 30/205 (14%)
Query: 36 WKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGK 95
+ I + D +L+ G +L + + GP+G GK
Sbjct: 416 AVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGA-KILLNKTQLRLKRARRYGICGPNGCGK 474
Query: 96 STLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD-DNLIGTLTVRETISYSAR 154
STL+ A+++ + G +T YV D D +V + + S
Sbjct: 475 STLMRAIANGQ-----VDGFPTQEECRT-------VYVEHDIDGTHSDTSVLDFVFESG- 521
Query: 155 LRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213
+ ++ +IE G + I +SGG + ++++A +L
Sbjct: 522 ---------VGTKEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNA 567
Query: 214 RLLFLDEPTSGLDSAAAFFVTQTLR 238
+L LDEPT+ LD+ ++ L
Sbjct: 568 DILLLDEPTNHLDTVNVAWLVNYLN 592
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+RG+SGG++ ++ +A RP L+ LDEPT+ LD + +++ L+ +G +I +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGVIIIT- 955
Query: 252 HQPSSEVF--ELFDRLYLLSGGKTVYFG 277
H S F L + ++ + G+ G
Sbjct: 956 H---SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 6e-12
Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 56/226 (24%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L G I + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHS--------GRI 71
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------- 183
++ +Q + I T++E I + + E R I + C
Sbjct: 72 SFCSQ-FSWIMPGTIKENIIFGV--------SYDEYR--YRSVI-----KACQLEEDISK 115
Query: 184 -----DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFF-- 232
+ V+G GI SGG+R R+S+A + L LD P LD F
Sbjct: 116 FAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 233 -VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
V + + +T I + E + D++ +L G + ++G
Sbjct: 173 CVCKLMA-----NKTRILVTSK--MEHLKKADKILILHEGSSYFYG 211
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 7e-12
Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 56/228 (24%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129
L G+T G L A++G G GKS+LL AL + + + G + + G+
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIK--------GS 67
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------ 183
AYV Q I ++RE I + E I Q CA
Sbjct: 68 VAYVPQ-QAWIQNDSLRENILFGC--------QLEEPY--YRSVI-----QACALLPDLE 111
Query: 184 ------DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFFV 233
T IG +G+ SGG+++RVS+A + + D+P S +D+ F
Sbjct: 112 ILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 234 TQTLRCLSRDG----RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ G +T I H D + ++SGGK G
Sbjct: 169 ----NVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGGKISEMG 210
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 54/257 (21%)
Query: 60 MVTLSN--------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
M+ LSN T L ++ + G + ++G SG+GKSTL+ R +
Sbjct: 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVN--L 76
Query: 112 L----SGTILLNGHK-TKLS--------------FGTAAYVTQDDNLIGTLTVRETISYS 152
L G++L++G + T LS F Q NL+ + TV ++
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGMIF-------QHFNLLSSRTVFGNVALP 129
Query: 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212
L D P E + V + +GL D D+ N +SGG+++RV+IA +
Sbjct: 130 LEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASN 181
Query: 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271
P++L D+ TS LD A + + L+ ++R G T++ H+ V + D + ++S G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 240
Query: 272 KTVYFGETSAAFEFFAQ 288
+ + E E F+
Sbjct: 241 ELI---EQDTVSEVFSH 254
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 54/267 (20%), Positives = 92/267 (34%), Gaps = 66/267 (24%)
Query: 30 PLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMG 89
+ +GD S + L L + + E G L A+ G
Sbjct: 21 LFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKD---------INFKIERGQLLAVAG 71
Query: 90 PSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149
+G+GK++LL + L G I + G ++ +Q ++ I T++E I
Sbjct: 72 STGAGKTSLLMMIMGELEP---SEGKIKHS--------GRISFCSQ-NSWIMPGTIKENI 119
Query: 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA------------DTVIGNWHLRGI-- 195
+ E R I + C + V+G GI
Sbjct: 120 IGV---------SYDEYR--YRSVI-----KACQLEEDISKFAEKDNIVLGE---GGITL 160
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFF---VTQTLRCLSRDGRTVIAS 250
SGG+R R+S+A + L LD P LD F V + + +T I
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-----NKTRILV 215
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ E + D++ +L G + ++G
Sbjct: 216 TSK--MEHLKKADKILILHEGSSYFYG 240
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 1e-11
Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 46/246 (18%)
Query: 58 TVMVTLSNGETH----NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
+++ + + + + ++G+ G + L+G +G+GK+T L A++ + +
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---K 60
Query: 114 GTILLNGHK-TKLS------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEK 166
G I+ NG T G A V + + LTV E + A R DK
Sbjct: 61 GKIIFNGQDITNKPAHVINRMGI-ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRD 118
Query: 167 RTLV--------ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218
+ ER L+ T +SGGE++ ++I ++ RP+LL +
Sbjct: 119 LEWIFSLFPRLKER------LKQLGGT---------LSGGEQQMLAIGRALMSRPKLLMM 163
Query: 219 DEPTSGLDSAAAFFVTQ---TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
DEP+ GL A V++ ++ ++++G T++ + Q + ++ Y+L G+ V
Sbjct: 164 DEPSLGL---APILVSEVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQIVL 219
Query: 276 FGETSA 281
G+ S
Sbjct: 220 EGKASE 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 57/170 (33%)
Query: 80 EPGTLTALMGPSGSGKSTLLDALSSRL------ASNAFLSGTILLNGHKTKLSFGTAAYV 133
E G ++GP+G+GK+ L L SG ILL+G
Sbjct: 24 ESGEYFVILGPTGAGKTLFL-----ELIAGFHVPD----SGRILLDG------------- 61
Query: 134 TQD-DNL------IGT----------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+D +L I + V++ + + R++ K+ ++ V T +
Sbjct: 62 -KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK---KIKDPKR---VLDTARD 114
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ ++ D +SGGE++RV++A ++ P++L LDEP S LD
Sbjct: 115 LKIEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 51/254 (20%), Positives = 90/254 (35%), Gaps = 62/254 (24%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+LE ++ PG L+G +GSGKSTLL A RL + G I ++G
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNT---EGEIQIDG---------- 81
Query: 131 AYVTQDDNLIGTLTVRETIS--------YSARLRL--------PDKMPWS--EK---RTL 169
+ I R+ +S R D+ W ++ R++
Sbjct: 82 ----VSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSV 137
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+E+ L S G ++ + +A +L + ++L LDEP++ LD
Sbjct: 138 IEQ--FPGKLDFVLVDGGCVL-----SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ +TL+ D TVI + + + D+ ++ K +
Sbjct: 191 YQIIRRTLKQAFAD-CTVILCEARIEAML--ECDQFLVIEENKVRQYDS----------- 236
Query: 290 GFPCPALRNPSDHF 303
P+D F
Sbjct: 237 --ILELYHYPADRF 248
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 6e-10
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 41/203 (20%)
Query: 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF---LSGTILLNGHKT 123
+ VL+ +T + +PG AL+GP+GSGK+T+++ L R F G IL++G
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVN-LLMR-----FYDVDRGQILVDGIDI 419
Query: 124 KL--------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLV 170
+ S G V QD L T TV+E + Y D+ E K T
Sbjct: 420 RKIKRSSLRSSIG---IVLQDTILFST-TVKENLKYG-NPGATDE----EIKEAAKLTHS 470
Query: 171 ERTIIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
+ I L + +TV+ + G +S G+R+ ++I L P++L LDE TS +D+
Sbjct: 471 DHFI--KHLPEGYETVLTD---NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 229 AAFFVTQTLRCLSRDGRT--VIA 249
+ + L +G+T +IA
Sbjct: 526 TEKSIQAAMWKL-MEGKTSIIIA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 58/369 (15%), Positives = 95/369 (25%), Gaps = 117/369 (31%)
Query: 24 VVGGLSP----LSETIWKEKINTEFSGD--VSAR-LTWKDLTVMV--TLSNGETHNVL-E 73
V L L I E+ + R + D V +S + + L +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133
L P + G GSGK+ + A V
Sbjct: 143 ALLE-LRPAKNVLIDGVLGSGKTWV-------------------------------ALDV 170
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHL 192
Y + ++ K+ W + K T++EM LQ + NW
Sbjct: 171 CLS--------------YKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTS 215
Query: 193 RG-ISGGERRRVSIA---LEILMRPR-----LLFLDEPTSGLDSAAAFFVTQTLRC---- 239
R S + R+ L L++ + LL L + AF L C
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAF----NLSCKILL 270
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ-AGFPCPALR- 297
+R + V + ++ L L+ + + L
Sbjct: 271 TTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVK---------SLLLKYLDCRPQDLPR 320
Query: 298 -----NP----------SDHFLRCIN---SDFDKVKATLKGSMKLKFETSDDPLEKITTA 339
NP D N + DK+ ++ S L + A
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----------LNVLEPA 369
Query: 340 EAIKNLIDF 348
E K
Sbjct: 370 EYRKMFDRL 378
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 68/468 (14%), Positives = 119/468 (25%), Gaps = 173/468 (36%)
Query: 17 KPAGNSIVVG----GLSPL-SETIWKEKINTEFSGDVSARLTWKDLTVMVTLSN-GETHN 70
+PA N ++ G G + + + K+ + + W + L N
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----W------LNLKNCNSPET 197
Query: 71 VLEGL---------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-- 119
VLE L + + + S ++ L L S+ N L +LLN
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQ 254
Query: 120 ----------GHKT-----------KLSFGTAAYVTQDDNLIGTLTVRETISYSAR-LRL 157
K LS T +++ D + + LT E S + L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDC 313
Query: 158 -PDKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWH--------------LRGISGGER 200
P +P T I E ++D T NW L + E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAES-IRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 201 RRVSIALEILMR----PR----LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI- 251
R++ L + P L++ D S + +L + + + SI
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIP 429
Query: 252 ----------------HQ-------------------PS------------------SEV 258
H+ P E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFEFFAQ----AGFPCPALRNPSDHFLRCINSDFDKV 314
LF ++L F F Q A + +
Sbjct: 490 MTLFRMVFL--------------DFRFLEQKIRHDSTAWNASGSILNTLQ-----QLKFY 530
Query: 315 KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDF-YQTSQHSYAAKEK 361
K + +DP + ++DF + ++ +K
Sbjct: 531 K---------PYICDNDP----KYERLVNAILDFLPKIEENLICSKYT 565
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 34/177 (19%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNG 120
G+ L+ + E G ++GPSG+GK+T + R+ A L +G + +
Sbjct: 15 KGKVV-ALDNVNINIENGERFGILGPSGAGKTTFM-----RII--AGLDVPSTGELYFDD 66
Query: 121 HK-TKLSFGTA-------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
V Q L LT E I++ KM E R VE
Sbjct: 67 RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEE 123
Query: 173 TIIEMGLQDCADTVIGNWHLR---GISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+ + + +SG +++RV++A ++ P LL LDEP S LD
Sbjct: 124 VAKILDIHHVLN--------HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 5e-08
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 196 SGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
SGGER + +A + M LL LDEPT LD + + + VI
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 250 SIHQPSSEVFELFDRLYLL 268
H E+ + D + +
Sbjct: 310 VSHDE--ELKDAADHVIRI 326
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 61 VTLS-NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTIL 117
V T VL G+ +PG+L A++G +GSGKSTL++ L RL G +
Sbjct: 347 VEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPE----RGRVE 401
Query: 118 LNGHKTK-LSFGT----AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
++ + + + V Q+ L + T++E + + D++ + K +
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHD 460
Query: 173 TIIEM--GLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228
II + G D+ + G SGG+++R+SIA ++ +P++L LD+ TS +D
Sbjct: 461 FIISLPEGY----DSRVER---GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 49/182 (26%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKTKLSFGTA------AYVTQD 136
L+GPSGSGKSTLL + A + SG I + K V Q+
Sbjct: 34 LLGPSGSGKSTLLYTI-------AGIYKPTSGKIYFDE---KDVTELPPKDRNVGLVFQN 83
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL---- 192
L +TV + I++ LR K P E V + + L
Sbjct: 84 WALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHID----------KLLNRY 130
Query: 193 -RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++RV+IA ++ P +L LDEP S LD A + R + +
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD---ALLRLEV--------RAELKRL 179
Query: 252 HQ 253
+
Sbjct: 180 QK 181
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 47/184 (25%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHK---TKLSFGTA------AYV 133
L+GPSG GK+T L + A L G I + + A V
Sbjct: 34 LLGPSGCGKTTTLRMI-------AGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL- 192
Q L +TV + I++ +LR K+P E V +GL + L
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE---------LLN 134
Query: 193 ---RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
R +SGG+R+RV++ I+ +P++ +DEP S LD A + R +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD---AKLRVRM--------RAELK 183
Query: 250 SIHQ 253
+ +
Sbjct: 184 KLQR 187
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 47/181 (25%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKTKLSFGTA------AYVTQD 136
L+GPSG GK+T L + A L G I + + V Q
Sbjct: 42 LLGPSGCGKTTTLRMI-------AGLEEPTEGRIYFGD---RDVTYLPPKDRNISMVFQS 91
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL---- 192
+ +TV E I++ +++ K P E V + +++ L
Sbjct: 92 YAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEE---------LLNRYP 139
Query: 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGG+R+RV++A I++ P +L +DEP S LD A R I +
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD---AKLRVAM--------RAEIKKLQ 188
Query: 253 Q 253
Q
Sbjct: 189 Q 189
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 49/182 (26%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFL----SGTILLNGHKTKLSFGTA------AYVTQD 136
L+GPSG GK+T L + A + SG I + L V Q+
Sbjct: 34 LLGPSGCGKTTTL-----LML--AGIYKPTSGEIYFDD---VLVNDIPPKYREVGMVFQN 83
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL---- 192
L +TV E I++ R R ++ E V ++ + +L
Sbjct: 84 YALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLID----------NLLDRK 130
Query: 193 -RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGG+++RV++A ++ +P++L DEP S LD A + R I +
Sbjct: 131 PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--ANLRM-IM--------RAEIKHL 179
Query: 252 HQ 253
Q
Sbjct: 180 QQ 181
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 196 SGGERRRVSIALEILMR------PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
SGGER + +A + M LL LDEPT LD + + + VI
Sbjct: 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 196 SGGERRRVSIAL-----EILMRPRL--LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
SGGE+ V+++L L+ R+ + LDEPT LD + + R + + +I
Sbjct: 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMII 341
Query: 249 ASIHQPSSEVFELFDRLY 266
+ H E+ ++ D +
Sbjct: 342 IT-HHR--ELEDVADVII 356
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L+ KDL V V E +L GL+ PG + A+MGP+GSGKSTL L+ R
Sbjct: 21 LSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV- 74
Query: 112 LSGTILLNG 120
GT+ G
Sbjct: 75 TGGTVEFKG 83
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L +DL + + +L+G+ G + ALMGP+G+GKSTL L+
Sbjct: 4 LEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV- 57
Query: 112 LSGTILLNG 120
G ILL+G
Sbjct: 58 ERGEILLDG 66
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI---SGGERRRVSIALEI----LMRPRL 215
+ R ++ + G D R SGGER +SI+L + + RL
Sbjct: 250 LTNGRFDIDFDDEKGGFII-KDW----GIERPARGLSGGERALISISLAMSLAEVASGRL 304
Query: 216 --LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
F+DE S LD+ + L+ L R + ++
Sbjct: 305 DAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 59/215 (27%)
Query: 61 VTLSN-----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--- 112
V L N GE V + + G +GPSG GKSTLL R+ A L
Sbjct: 4 VQLQNVTKAWGEVV-VSKDINLDIHEGEFVVFVGPSGCGKSTLL-----RMI--AGLETI 55
Query: 113 -SGTILLNGHKTKLSFGTA------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
SG + + K T V Q L L+V E +S+ +L
Sbjct: 56 TSGDLFIGE---KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEV 109
Query: 166 KRTLVERT--IIEMGLQDCADTVIGNWHL-----RGISGGERRRVSIALEILMRPRLLFL 218
V + ++++ HL + +SGG+R+RV+I ++ P + L
Sbjct: 110 INQRVNQVAEVLQLA------------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253
DEP S LD AA V Q R I+ +H+
Sbjct: 158 DEPLSNLD--AALRV-QM--------RIEISRLHK 181
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.94 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.9 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.89 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.89 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.85 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.84 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.84 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.83 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.82 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.82 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.81 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.81 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.81 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.8 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.8 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.79 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.79 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.79 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.78 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.77 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.75 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.75 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.75 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.74 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.72 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.72 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.69 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.68 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.66 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.63 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.61 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.6 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.58 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.55 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.54 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.54 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.52 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.51 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.51 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.5 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.5 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.49 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.48 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.46 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.45 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.44 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.42 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.42 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.41 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.41 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.4 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.39 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.36 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.32 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.32 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.31 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.3 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.29 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.25 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.19 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.14 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.13 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.09 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.07 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.06 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.01 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.97 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.97 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.96 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.94 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.93 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.91 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.9 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.88 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.83 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.81 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.81 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.79 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.67 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.61 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.6 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.58 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.52 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.52 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.44 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.4 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.38 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.31 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.3 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.24 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.23 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.2 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.2 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.18 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.17 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.17 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.16 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.13 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.05 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.05 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.03 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.0 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.97 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.96 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.93 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.93 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.92 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.84 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.83 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.81 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.78 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.78 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.76 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.76 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.75 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.72 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.68 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.65 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.61 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.6 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.59 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.56 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.54 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.5 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.48 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.46 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.42 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.38 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.38 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.36 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.34 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.31 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.31 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.26 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.25 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.25 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.22 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.18 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.18 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.17 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.16 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.16 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.14 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.13 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.1 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.07 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.06 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.04 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.03 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.98 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.97 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.93 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.89 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.88 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.88 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.81 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.78 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.76 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.75 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.75 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.74 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.7 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.7 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.7 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.7 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.7 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.65 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.65 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.58 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.56 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.5 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.48 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.46 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.41 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.4 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.38 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.33 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.3 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.3 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.25 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.23 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.2 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.17 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.16 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.16 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.15 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.15 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.1 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.08 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.06 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.03 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.01 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.98 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.97 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.96 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.96 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.96 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.95 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.93 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.92 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.88 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.88 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.87 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.85 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.74 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.74 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.74 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.72 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.72 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.71 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.7 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.68 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.68 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.67 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.67 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.67 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.64 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.64 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.61 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.6 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.6 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.59 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.59 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.58 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.54 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.54 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.53 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.52 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.51 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.5 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.49 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.49 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.49 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.48 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.47 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.47 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.47 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.46 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.46 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.43 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.43 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.43 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.4 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.37 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.36 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.36 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.36 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.36 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.35 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.35 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.34 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.33 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.33 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.32 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.3 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.3 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.29 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.29 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.29 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.29 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.28 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.25 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.25 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.23 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.2 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.18 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.17 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.16 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.16 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.14 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.14 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.09 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.09 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.09 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.07 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.04 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.03 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.02 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.01 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.99 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.98 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.94 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.93 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.93 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.9 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.89 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.88 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.88 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.88 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.87 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.87 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.87 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.87 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.86 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.85 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.82 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.81 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.8 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.79 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.79 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.79 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.76 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.73 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.73 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.72 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.72 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.72 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.7 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.7 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.69 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.69 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.68 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.68 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.67 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.67 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.67 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.66 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.66 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.65 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.65 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.65 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.64 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.61 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.61 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.59 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.58 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.58 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.55 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.55 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.51 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.5 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.48 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.48 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.47 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.46 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.46 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.44 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.4 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.4 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.37 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.34 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.32 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.29 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.25 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.25 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.23 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.22 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.2 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.16 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.15 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.14 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.12 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.12 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.1 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.1 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.08 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.07 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.07 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.99 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.98 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.96 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.96 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.95 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.89 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.87 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.85 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.84 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.83 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.82 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.78 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 93.72 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.65 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.63 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.57 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 93.51 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.16 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.13 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.12 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 93.11 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.99 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.98 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 92.94 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.9 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 92.83 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.81 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 92.8 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.79 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.78 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.82 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 92.62 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.61 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 92.55 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 92.46 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 92.44 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 92.41 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 92.34 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 92.25 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 92.15 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 92.12 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 92.11 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 92.07 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 92.03 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 91.98 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 91.96 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.94 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 91.88 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=422.77 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=197.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|..+. ....+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 3699999999996321 2357999999999999999999999999999999999999986 9999999998532
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.+|||||++.+++.+||+||+.++.... ..+..+.+++++++|+.+||.+..++ ++.+|||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQ 170 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQ 170 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 1357999999999999999999999987654 34566777889999999999887776 45679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ +++.++||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 499999999995 6888999999999999999999998
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 250 ev~ 252 (366)
T 3tui_C 250 EVF 252 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=422.62 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec----C--
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----K-- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~----~-- 124 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48999999999 4578999999999999999999999999999999999999996 99999999875 1
Q ss_pred -CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 125 -~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
...+.+|||+|++.+||.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRV 147 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRA 147 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHH
Confidence 12357999999999999999999999986543 2345566778999999999998887754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+..+.++++.|+++.+ .|.|+|++|||. .++..+||||++|++|+++..|+++++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 999999999999999999999999999999998888754 699999999995 789999999999999999999999987
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 227 ~~ 228 (359)
T 3fvq_A 227 YR 228 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=422.65 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=197.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 38999999999 4578999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.+|||+|++.+||.+||+||+.|+...+ ..++.+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHHHHHHHHH
Confidence 67999999999999999999999997764 355677778899999999999887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999765 99999999995 78999999999999999999999998753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-51 Score=396.66 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=189.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
|+++||++.|..+. ..+.+|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999995321 1356999999999999999999999999999999999999986 99999999975321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHH
Q 010936 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerq 201 (497)
++.+|||+|++.+++.+||+||+.++.........+..+..+++.++++.++|.+.. ++ ++.+|||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~Q 152 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHHHHH
Confidence 135999999999999999999999986543222344566677889999999997643 55 45579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ + +..+||+|++|++|+++..++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999775 99999999996 4 56899999999999999999887
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 64
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=400.29 Aligned_cols=216 Identities=29% Similarity=0.433 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---C--
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~-- 125 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 49999999999 3467999999999999999999999999999999999999986 999999998763 1
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 167 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQR 167 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHH
Confidence 1246999999999999999999999964 322 2344455677899999999988777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987799999999995 678889999999999999999998876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 247 ~ 247 (263)
T 2olj_A 247 F 247 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=401.12 Aligned_cols=216 Identities=28% Similarity=0.402 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +++.+|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 48999999999 3467999999999999999999999999999999999999986 9999999987531
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 010936 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNW 190 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~ 190 (497)
.++.++||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP--- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG---
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc---
Confidence 1246999999999999999999999964 322 23444556778999999999887 77654
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||+|++|++
T Consensus 152 --~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 152 --VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 228 (262)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999987799999999995 678889999999999
Q ss_pred CeEEEEeCchhHH
Q 010936 271 GKTVYFGETSAAF 283 (497)
Q Consensus 271 G~iv~~G~~~~~~ 283 (497)
|++++.|+++++.
T Consensus 229 G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 229 GKIEEEGDPEQVF 241 (262)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=390.37 Aligned_cols=211 Identities=29% Similarity=0.367 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|+++.| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999999 3467999999999999999999999999999999999999986 99999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 -----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 147 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQ 147 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 146999999999999999999999976543 2334455677899999999988877754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+ .+||++++|++|++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999987799999999995 455 89999999999999998863
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-51 Score=404.53 Aligned_cols=218 Identities=27% Similarity=0.420 Sum_probs=191.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|. +.+.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEEC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 599999999993 2345999999999999999999999999999999999999986 9999999998631
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.+|||||++. .+..+||+||+.|+.... ..+..+..++++++++.+||.+..++.+ .+||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 151 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 151 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHH
Confidence 1346999999963 344789999999987643 3456667788999999999988877754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ +++..+||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999996 57889999999999999999999988
Q ss_pred HHH
Q 010936 282 AFE 284 (497)
Q Consensus 282 ~~~ 284 (497)
+..
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 753
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=395.42 Aligned_cols=217 Identities=29% Similarity=0.394 Sum_probs=192.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 48999999999 3467999999999999999999999999999999999999986 9999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.++||+|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIA 158 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999976543 2234444567889999999988877754 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987899999999995 67888999999999999999999887654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=412.60 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=195.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 48999999999 3467999999999999999999999999999999999999986 9999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCCHHHHH
Confidence 2357999999999999999999999987653 244556677899999999998887775 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 99999999995 6889999999999999999999998
Q ss_pred hHHH
Q 010936 281 AAFE 284 (497)
Q Consensus 281 ~~~~ 284 (497)
++..
T Consensus 226 ~l~~ 229 (372)
T 1g29_1 226 EVYD 229 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=397.06 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=189.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 59999999999 3467999999999999999999999999999999999999986 99999999985321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPD---------KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
++.++||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++.+ .+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 153 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GE 153 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hh
Confidence 24699999999999999999999987532 1000 0122344567899999999988877755 47
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|+++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5788899999999999999
Q ss_pred EEeCchh
Q 010936 275 YFGETSA 281 (497)
Q Consensus 275 ~~G~~~~ 281 (497)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999887
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=412.53 Aligned_cols=217 Identities=24% Similarity=0.419 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 38999999999 3467999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQRVALAR 146 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 233444457799999999998887775 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999765 99999999995 68899999999999999999999988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-50 Score=412.21 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=195.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 38999999998 3467999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAIAR 146 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987653 234556677899999999999887775 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999765 99999999995 68899999999999999999999988753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-50 Score=410.63 Aligned_cols=219 Identities=24% Similarity=0.421 Sum_probs=196.1
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...|+++||++.|. +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 35699999999882 2357999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.+|||+|+..+||.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRval 156 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQRVAL 156 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHH
Confidence 2467999999999999999999999987653 344556677899999999999887775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 99999999995 6889999999999999999999998875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-50 Score=411.46 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=193.9
Q ss_pred EEEEEeEEEEEEccCCcccc--eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHN--VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++||++.| ++++ +|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 38999999999 3466 999999999999999999999999999999999999986 9999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .+||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~ 146 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQ 146 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 2467999999999999999999999986543 3445566778999999999998887754 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999764 99999999995 688999999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 226 ~~l~ 229 (353)
T 1oxx_K 226 EDLY 229 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=389.71 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=187.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++||++.| +.+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 99999999985321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
++.++||+|++.+++.+||+||+.++.... ....+..+.++++++.++ |.+..++. +.+|||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv 148 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQML 148 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHH
Confidence 235999999999999999999999864211 122334566788999994 87766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987899999999995 6788999999999999999999887753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=395.11 Aligned_cols=215 Identities=30% Similarity=0.371 Sum_probs=190.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..|+++|+++.| +.+++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 469999999999 4578999999999999999999999999999999999999986 89999999986421
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++.+ .+|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 246899999999888899999999976432 11234567889999999988887755 479999999999
Q ss_pred HHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 205 IALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 205 IA~aL~~------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||+|++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999765 67999999995 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 231 ~~~~~~ 236 (266)
T 4g1u_C 231 TPEEVL 236 (266)
T ss_dssp CHHHHC
T ss_pred CHHHHh
Confidence 998764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=411.88 Aligned_cols=217 Identities=23% Similarity=0.377 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 38999999999 3467999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAVAR 154 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 57999999999999999999999985432 344556677899999999999887774 4679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999765 99999999995 68899999999999999999999988753
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=401.48 Aligned_cols=247 Identities=25% Similarity=0.327 Sum_probs=198.8
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
+++.++++|++++++.++....... .. ........|+++||++.|. +.+.+|+||||+|+
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~~~--~~--------------~~~~~~~~i~~~~vs~~y~----~~~~vL~~isl~i~ 78 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDLPG--AG--------------PLRFQKGRIEFENVHFSYA----DGRETLQDVSFTVM 78 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCCTT--CB--------------CCCCSSCCEEEEEEEEESS----TTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcccccccc--cc--------------ccCCCCCeEEEEEEEEEcC----CCCceeeeeeEEEc
Confidence 4688999999999987665322000 00 0001123599999999994 24679999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+||++||+||||||||||+++|+|+++|. +|+|.++|.++... ++.++||+|++.+|+. ||+||+.++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT 154 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc
Confidence 99999999999999999999999999986 99999999986431 3569999999999864 999999987432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
... ..+.++++.+++. +..++.+|. .+.+|||||||||+|||||+.+|+||||||||++||+.
T Consensus 155 -----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 -----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp -----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred -----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 112 2244445544443 345777765 66789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
++..|++.|+++.+ ++|+|++||++ +.+. .||+|++|++|++++.|+++++..
T Consensus 225 ~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 225 NERAIQASLAKVCA-NRTTIVVAHRL-STVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCSH-HHHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEcCh-HHHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999865 69999999996 4555 499999999999999999998764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=404.56 Aligned_cols=211 Identities=26% Similarity=0.426 Sum_probs=188.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++||++.| +++ +|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 7899999999 345 999999999999999999999999999999999999986 9999999998532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||+|+..+||++||+||+.|+...+. .+.. ++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 69999999999999999999999876431 1122 66889999999998887754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 599999999995 6889999999999999999999998864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=387.92 Aligned_cols=218 Identities=28% Similarity=0.376 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEEccCCcc---cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--
Q 010936 51 RLTWKDLTVMVTLSNGET---HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-- 125 (497)
.|+++||++.|.. +. +.+|+||||++++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEEST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHH
Confidence 4899999999931 12 57999999999999999999999999999999999999986 9999999987531
Q ss_pred CcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHHHH
Q 010936 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++||+|++ .+++.+||+||+.++.... .+..+.+++++++++.+||. +..++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qR 146 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRR 146 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHH
Confidence 235799999995 5667789999999875321 11122245688999999998 7777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+||++++|++|++++.|+++++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999996 567889999999999999999998876
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 226 ~~ 227 (266)
T 2yz2_A 226 LE 227 (266)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=382.01 Aligned_cols=210 Identities=26% Similarity=0.377 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.| +. +|+||||++++ |+++|+||||||||||||+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 6899999999 22 59999999999 999999999999999999999999986 9999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999874321 11222567889999999988777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999764 99999999995 6788999999999999999999988764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=381.58 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCceeEEEECCEecCCC--
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~--~~~~~~~~G~I~~~G~~~~~~-- 126 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 48999999999 346799999999999999999999999999999999998 5664 99999999985321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcccCC-CCHHHH
Q 010936 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGER 200 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~-LSgGer 200 (497)
+..++|++|++.+++.+||+||+.++............+..+++.++++.+|| .+..++.+ .+ ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHH
Confidence 23489999999999999999999987532111112233445678899999999 46666644 46 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G~~ 279 (497)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+ ||++++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999976799999999996 567777 599999999999999988
Q ss_pred h
Q 010936 280 S 280 (497)
Q Consensus 280 ~ 280 (497)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=388.28 Aligned_cols=219 Identities=25% Similarity=0.277 Sum_probs=185.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC--C--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~-- 125 (497)
+.|+++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 20 ~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 469999999999 3467999999999999999999999999999999999999986 999999998753 1
Q ss_pred ---CcCcEEEEcCCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ---SFGTAAYVTQDDNL--IGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+..++.+ .+|||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 166 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTGE 166 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 13569999999754 3457999999886321100 01112334567889999999988877755 4799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV--IASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--I~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ .++..+||+|++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999997668999 9999995 5778899999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 246 ~~~~~ 250 (279)
T 2ihy_A 246 AVEDI 250 (279)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 88765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=374.33 Aligned_cols=210 Identities=27% Similarity=0.334 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.|. .++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~----~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQ----AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEET----TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeC----CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 589999999992 1467999999999999999999999999999999999999986 999982 2569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
+||||++.+++.+||+||+.++...... .........++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAI 143 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 9999999999899999999987532210 00112334567889999999988777754 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||++++|++|+ ++.|+++++
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999876 99999999995 67889999999999999 999988765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=378.04 Aligned_cols=221 Identities=28% Similarity=0.343 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCCC--
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~-- 126 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|++ +| .+|+|.++|++....
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCH
Confidence 59999999999 3467999999999999999999999999999999999984 45 489999999975321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhh-c---cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 127 ----FGTAAYVTQDDNLIGTLTVRETISYSAR-L---RLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
...++||+|++.+++.+||.||+.+... . ......+..+..++++++++.+||. +..++.++ .+|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCH
Confidence 1248999999999999999999987642 1 1111223444456789999999996 45665432 14999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (497)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999876799999999996 566665 899999999999999
Q ss_pred eCchhHHH
Q 010936 277 GETSAAFE 284 (497)
Q Consensus 277 G~~~~~~~ 284 (497)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99987653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=380.72 Aligned_cols=217 Identities=29% Similarity=0.376 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|..+ ..+.+|+||||+|++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 59999999998310 1267999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLVERTIIEM--GLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++||+|++.+++ .||+||+.++.... . .... ....+.++++.+ ||.+..++ ++.+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG 160 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGG 160 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHH
Confidence 1246999999998887 59999999864221 1 1111 122345677777 66555554 45679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||++||++ ..+. .||+|++|++|++++.|
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 489999999995 4554 59999999999999999
Q ss_pred CchhHHH
Q 010936 278 ETSAAFE 284 (497)
Q Consensus 278 ~~~~~~~ 284 (497)
+++++..
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=372.14 Aligned_cols=214 Identities=28% Similarity=0.450 Sum_probs=179.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..++++||++.|.. +.+.+|+||||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 35899999999831 2367999999999999999999999999999999999999986 9999999998632
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSg 197 (497)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..+ +.++. .+.+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSg 148 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSG 148 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCH
Confidence 1246999999998887 599999987631 112 234667777788765443 33332 4678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++ ..+ ..||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~-~~~-~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRL-STV-KNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSG-GGG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 589999999996 444 469999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 226 ~~~~l~ 231 (247)
T 2ff7_A 226 KHKELL 231 (247)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 988763
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=370.29 Aligned_cols=205 Identities=27% Similarity=0.385 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||++. .+|+|+||++++||+++|+||||||||||||+|+|+++| . |+|.++|++...
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 5889999864 589999999999999999999999999999999999987 5 999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++.+||+||+.++... ... +++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 124699999999999999999999986311 111 456889999999988777654 5799999999999
Q ss_pred HHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 206 ALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 206 A~aL~~~p~-------lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999995 67789999999999999999998
Q ss_pred chhH
Q 010936 279 TSAA 282 (497)
Q Consensus 279 ~~~~ 282 (497)
++++
T Consensus 217 ~~~~ 220 (249)
T 2qi9_C 217 REEV 220 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=371.30 Aligned_cols=212 Identities=26% Similarity=0.426 Sum_probs=180.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
|+++|+++.|. +.+.+|+||||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHH
Confidence 78999999882 2367999999999999999999999999999999999999986 9999999987531 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-------IGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------vg~~~~~~LSgGe 199 (497)
++.++||+|++.+++. ||+||+.++... ... .+.+.++++.+++.+..++. ++ ..+.+|||||
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq 144 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQ 144 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHH
Confidence 3569999999988874 999999875311 111 23467788889987765443 22 2567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++ ..+ ..||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999995 455 56999999999999999988
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 222 ~~~~ 225 (243)
T 1mv5_A 222 NELV 225 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-47 Score=363.78 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=173.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
+..|+++|+++.| ++ ++|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+....++
T Consensus 8 ~~~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 3469999999998 34 7999999999999999999999999999999999999986 9999999987532345
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++||+|++.+++.+||+||+.++...+. .. .+ +++++++++.+||.+. ++. +.+|||||||||+||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAST 147 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999999765431 11 11 3568889999999876 654 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||+++++ +|+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999976689999999996 5678888988755 4544
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=365.66 Aligned_cols=214 Identities=28% Similarity=0.398 Sum_probs=177.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|... ..+.+|+||||++++|++++|+|||||||||||++|+|++++ +|+|.++|.+...
T Consensus 16 ~~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 359999999998311 124699999999999999999999999999999999999864 7999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSg 197 (497)
.++.++||+|++.+++ .||+||+.++.. .... +.+.++++.+++. +..++.++. ++..|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSg 158 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSG 158 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCH
Confidence 1356999999999886 599999988531 1111 2345566666653 334555543 5678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++||++ ..+ ..||++++|++|++++.|
T Consensus 159 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~-~~~-~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRL-STI-SSAESIILLNKGKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSG-GGS-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999965 89999999996 444 569999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 236 ~~~~l~ 241 (260)
T 2ghi_A 236 THKDLL 241 (260)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 988764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=365.93 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (497)
|+++|+++.|..+. ..+.+|+|+||+++ |++++|+|||||||||||++|+|++ |+ +|+|.++|++... .++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999994200 01679999999999 9999999999999999999999999 86 9999999987531 2457
Q ss_pred EE-EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
++ |++|++.+ .+||+||+.++.... .. .+++++++++.+||. +..++.+ .+|||||||||+|||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSL 141 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 99 99999887 789999999976542 11 134578899999998 7777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC-eEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||+|||+.++..+++.|+++++ |||++||++ .++.++|| ++++|++|++++.|+++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999998754 999999996 57788999 99999999999999998765
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=402.15 Aligned_cols=247 Identities=25% Similarity=0.312 Sum_probs=199.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|...... .+ .........++++|+++.|+. +.+++|+|+||++++
T Consensus 306 ~~~~s~~ri~~~l~~~~~~~~~~----~~------------~~~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 306 QSFASMDRVFQLIDEDYDIKNGV----GA------------QPIEIKQGRIDIDHVSFQYND---NEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCT----TC------------CCCCCCSCCEEEEEEEECSCS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcccCCC----Cc------------cccCCCCCeEEEEEEEEEcCC---CCCcceeeeEEEECC
Confidence 57889999999998766532200 00 000111235999999999842 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|. +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++...
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~- 441 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT- 441 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 99999999986421 3579999999999987 999999886321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
... +.+.+.++..++ .+..++.+|+ ++.+|||||||||+|||||+++|++|+|||||||||+.+
T Consensus 442 ----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 442 ----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp ----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred ----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 122 224444444443 4567888875 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ |+|+|++||++. .+ ..||+|++|++|++++.|+++++..
T Consensus 513 ~~~i~~~l~~~~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 513 ESIIQEALDVLSK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999998854 799999999964 44 5699999999999999999988754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=403.64 Aligned_cols=247 Identities=24% Similarity=0.364 Sum_probs=198.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|...... .+ . ...+....++++|+++.|+. +.+++|+|+||++++
T Consensus 308 ~~~~s~~ri~~~l~~~~~~~~~~----~~---------~---~~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 308 RASASAKRVLEVLNEKPAIEEAD----NA---------L---ALPNVEGSVSFENVEFRYFE---NTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCT----TC---------B---CCSCCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCccCCCC----Cc---------c---ccCCCCCcEEEEEEEEEcCC---CCCcceeceEEEEcC
Confidence 57889999999998776543200 00 0 00011235999999999842 346799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|. +|+|.+||++... .++.++||||++.+|+. ||+||+.++...
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 443 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED- 443 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC-
Confidence 9999999999999999999999999986 9999999998542 13579999999999976 999999876321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
...+ .+.+.++..+ +++..++.+|+ ++.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 444 ----~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 444 ----ATDD----EIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp ----CCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred ----CCHH----HHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1222 2223333333 44567888875 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +|+|+|++||++ +. ...||+|++|++|++++.|+++++.+
T Consensus 515 ~~~i~~~l~~~~-~~~tvi~itH~l-~~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 515 EKRILDGLKRYT-KGCTTFIITQKI-PT-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHHHS-TTCEEEEEESCH-HH-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecCh-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999984 489999999996 34 46899999999999999999998764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=399.55 Aligned_cols=246 Identities=28% Similarity=0.382 Sum_probs=200.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|..+. + + . . . .+....++++|+++.|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~---~---~--~-----~----~-~~~~~~i~~~~v~~~y~~---~~~~~l~~v~~~i~~ 368 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDE---G---K--R-----V----I-DRATGDLEFRNVTFTYPG---REVPALRNINLKIPA 368 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCC---C---C--B-----C----C-SCCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCccC---C---C--C-----C----C-CCCCCcEEEEEEEEEcCC---CCCccccceeEEEcC
Confidence 577899999999987655321 0 0 0 0 0 011224999999999831 126799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||||++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-- 442 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999998642 13469999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+ ..+ +++++++++.+++.+ ..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 443 -E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp -S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred -C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 122 234666777777643 56777775 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ |+|+|++||++. .+ +.||+|++|++|++++.|+++++..
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 516 ERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999865 899999999964 44 5799999999999999999988754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=398.80 Aligned_cols=245 Identities=28% Similarity=0.390 Sum_probs=199.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|..+. +.. . . ......++++|+++.|+. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~---------~----~-~~~~~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~ 368 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDN----GKY---------E----A-ERVNGEVDVKDVTFTYQG---KEKPALSHVSFSIPQ 368 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCC----CCC---------C----C-CCCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578899999999986654211 000 0 0 011235999999999942 126799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||+++|+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||||++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999987532 23579999999999985 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+ ..+ +++++++++.+++.+ ..|+.+|+ .+.+||||||||++|||||+++|++|+|||||++||+.+
T Consensus 443 -~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 112 234666777777643 45677775 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++.+ |+|+|++||++ +.+ +.||+|++|++|++++.|+++++.
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 516 ERAIQAALDELQK-NKTVLVIAHRL-STI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999865 89999999996 444 579999999999999999998765
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=354.58 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=168.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.|.. +.+++|+||||++++|++++|+|||||||||||++|+|+++|. +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998831 2467999999999999999999999999999999999999986 99999998 48
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCCHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv 203 (497)
+|++|++.+++. ||+||+.++... .. ....+.++.+++.+. .++.++. .+.+|||||||||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv 139 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 139 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHH
Confidence 999999999886 999999885321 11 112334444454332 2333432 4678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997 45554 489999999995 455 46999999999999999998876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 217 ~ 217 (229)
T 2pze_A 217 Q 217 (229)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=355.44 Aligned_cols=207 Identities=25% Similarity=0.367 Sum_probs=166.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.|.. ..+.+|+||||++++|++++|+|||||||||||++|+|+++|. +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3899999999831 1467999999999999999999999999999999999999885 99999998 38
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
+||+|++.+ +.+||+||+.++.... .... ..+.+ +++.+++.+ ..++.++ .++.+|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~~------~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQLE------EPYY-RSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCCC------TTHH-HHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccccC------HHHH-HHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 999999865 5789999999864211 1111 11111 222333322 2233333 35678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||+|||+.++..+++.|. ++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 343 4899999999964 44 579999999999999999988764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=402.00 Aligned_cols=245 Identities=24% Similarity=0.357 Sum_probs=196.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|..+. +. . . ...+....|+++|+++.|. +++++|+|+||++++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~---~~--~---------~---~~~~~~~~i~~~~v~~~y~----~~~~~l~~isl~i~~ 380 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDD---PD--A---------V---ELREVRGEIEFKNVWFSYD----KKKPVLKDITFHIKP 380 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC---SS--C---------C---CCCSCCCCEEEEEEECCSS----SSSCSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCCCC---CC--C---------C---CCCCCCCeEEEEEEEEECC----CCCccccceEEEEcC
Confidence 467899999999987665321 00 0 0 0011123599999999983 346799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++...
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 455 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG- 455 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 99999999986421 3579999999999975 999999986321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+.+ .+.+.++..+ +.+..++.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 456 ----~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 456 ----ATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp ----CCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred ----CCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 1111 2333333333 34456777775 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +|+|+|++||++. .+ ..||+|++|++|++++.|+++++..
T Consensus 527 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 527 EKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 5899999999974 45 4599999999999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=380.14 Aligned_cols=214 Identities=24% Similarity=0.301 Sum_probs=180.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..|+++||++.|.. +.+.+|+||||+|++||+++|+|||||||||||++|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999942 24679999999999999999999999999999999999986 4 89999999875321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------cccCCCCHH
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN------WHLRGISGG 198 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgG 198 (497)
++.++||||++.+|+ +||+||+.+.. ... ++++.++++.++|.+..++.... .....||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 357999999999998 59999996431 111 24577899999998766654321 122349999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|++|||||||||||+.++..+.+.|+++. .++|+|++||+. + ....||+|++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~-e-~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI-E-AMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS-G-GGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH-H-HHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 479999999995 3 556799999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 237 ~~el~~ 242 (390)
T 3gd7_A 237 ILELYH 242 (390)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=423.10 Aligned_cols=250 Identities=26% Similarity=0.408 Sum_probs=205.0
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.+|..+....+ .. ..+..-.|+++||++.|+.+ .+.++|+||||+|++
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~------~~----------~~~~~g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLA------GE----------KKKLYGKVIFKNVRFAYPER--PEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCC------SB----------CCCCCCCEEEEEEEECCTTS--CSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCC------CC----------CCCCCCeEEEEEEEEeCCCC--CCCccccceeEEECC
Confidence 4678999999999987775431110 00 01112259999999999532 345799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|+. |++|||.|+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld-- 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD-- 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC--
Confidence 9999999999999999999999999996 9999999998643 24689999999999987 99999988742
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+...+.+ .+.++++..+ |++..||.||+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1179 -~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1179 -PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp -TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred -CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 1223333 3455555554 45678999997 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|+++. +|+|+|+++|+++ ....||+|++|++|+++++|++++++.
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998764 4899999999975 356799999999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=419.01 Aligned_cols=249 Identities=26% Similarity=0.353 Sum_probs=205.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++||.++++.+|..+.....+ ....+....|+++|+++.|+.. +++++|+|+||++++
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~---------------~~~~~~~g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~ 443 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAG---------------RKDMKIKGDITVENVHFTYPSR--PDVPILRGMNLRVNA 443 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCC---------------CCCCCCCCCEEEEEEEECCSSS--TTSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCcccccccccc---------------ccCCCCCCcEEEEEeeeeCCCC--CCCceeeceEEeecC
Confidence 57899999999999887754311100 0001122359999999999532 356899999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|.|+++|. +|+|.+||.+++.. ++.++||+|++.+|.. ||+|||.|+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 9999999999999999999999999996 99999999986532 3579999999999987 99999999742
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ |++..||.||+ .+..||||||||++||||++++|+|||||||||+||+.+
T Consensus 518 ---~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 518 ---GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp ---TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred ---cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 12332 3444444433 46778999997 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|.++.+ |+|+|+++|+++ ....||+|++|++|++++.|+.+++..
T Consensus 590 e~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 590 EGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 9999999998865 899999999975 467899999999999999999998863
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=346.97 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=154.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.. +.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++| .+
T Consensus 40 ~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp ----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 58999999742 56999999999999999999999999999999999999885 99999998 48
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCCHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv 203 (497)
+||+|++.+++. ||+||+. +. . ... ..+.+.++.+++.+. .++.++. .+.+|||||||||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999998885 9999998 42 1 111 123344455555432 2333332 4578999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 4554 489999999995 455 56999999999999999999876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 246 ~ 246 (290)
T 2bbs_A 246 Q 246 (290)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=405.98 Aligned_cols=251 Identities=27% Similarity=0.391 Sum_probs=199.5
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|+.|+.++++.+|..+.....+.. ..+....|+++|+++.|+.+ ...++|+||||++++
T Consensus 353 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~---------------~~~~~g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~ 415 (1284)
T 3g5u_A 353 NARGAAYEVFKIIDNKPSIDSFSKSGHK---------------PDNIQGNLEFKNIHFSYPSR--KEVQILKGLNLKVKS 415 (1284)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCSSCCC---------------CTTCCCCEEEEEEEECCSST--TSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcCCcccccCCC---------------CCCCCCeEEEEEEEEEcCCC--CCCcceecceEEEcC
Confidence 5788999999999877764321100000 00112349999999999521 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.++|.++... ++.+|||+|++.+|+. ||+||+.++...
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~- 490 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED- 490 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999986 99999999986421 3569999999999987 999999998431
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKRTLV-----ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
.+.++..+.+ .+.++ .+.+..||.+|+ .+.+|||||||||+|||||+.+|+|||||||||+||+.+..
T Consensus 491 ----~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 491 ----VTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred ----CCHHHHHHHHHHhCcHHHHH--hccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 2222222211 22232 345567888886 67789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+.+.|+.+. +|+|+|+++|++ +.+ ..||+|++|++|++++.|+++++..
T Consensus 564 ~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 564 VVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999998875 489999999996 455 4599999999999999999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=395.35 Aligned_cols=251 Identities=27% Similarity=0.415 Sum_probs=199.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.+|..+.....+.. .......++++|+++.|+.+ ...++|+||||++++
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~---------------~~~~~g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYSTQGLK---------------PNMLEGNVQFSGVVFNYPTR--PSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCSSCCC---------------TTTTSCCEEEEEEEBCCSCG--GGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCccccccccccc---------------ccCCCCcEEEEEEEEECCCC--CCCeeecceeEEEcC
Confidence 4678999999999987765431110000 00112249999999999421 234699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|. +|+|.+||+++.. .++.++||||++.+|+ .||+||+.++....
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC
Confidence 9999999999999999999999999986 9999999998642 2467999999998886 49999998864221
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.++. .+.++.. .+.+..||.+|+ .+..|||||||||+|||||+++|+||||||||+|||+.+
T Consensus 1135 ---~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1135 ---VVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp ---CCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred ---CCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1233222 2223322 345678899986 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++ .+|+|||+++|++. .+ ..||+|++|++|++++.|+++++..
T Consensus 1207 ~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1207 EKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 45899999999974 55 5699999999999999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=347.85 Aligned_cols=206 Identities=24% Similarity=0.293 Sum_probs=177.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++++|+++.| ++ ..|+++||++++||+++|+|||||||||||++|+|+++|. +|+|.+. .
T Consensus 355 ~~~l~~~~l~~~~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~--------~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDY-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD--------L 417 (607)
T ss_dssp CEEEEECCEEEEC-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC--------C
T ss_pred ceEEEEeceEEEe-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe--------e
Confidence 3579999999987 22 3699999999999999999999999999999999999986 8998761 4
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|+||+..+++.+||.|++....... ....+++.++++.+||.+..++.+ .+|||||||||+||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAAT 485 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999988878899999887641110 011355788999999988777755 4799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (497)
|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+ .++..+||+|++|++ |+++..|+++++..
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999999975 699999999995 688899999999986 88888999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=343.65 Aligned_cols=206 Identities=26% Similarity=0.291 Sum_probs=176.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++++|+++.| ++ ..|+++||++++||++||+||||||||||+++|+|+++|. +|+|.+ ..
T Consensus 285 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDY-----GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DL 347 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CC
T ss_pred CeEEEEeeEEEEE-----CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------Cc
Confidence 3569999999988 22 3699999999999999999999999999999999999986 899875 13
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|+....+.+||.|++......... ..+.++++++.+++.+..++.+ ..|||||||||+||++
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 699999998877889999988754111100 1245778899999987777655 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (497)
|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+ +++..+||+|++|++ |+++..|+++++..
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999999975 599999999995 788999999999986 78888999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=338.38 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=175.1
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++++|+++.| + ...|+++|+++++||++||+||||||||||+++|+|+++|+ +|+|.++| .
T Consensus 267 ~~~l~~~~l~~~~-----~-~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL-----G-DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEE-----T-TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------C
T ss_pred cceEEEcceEEEE-----C-CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------e
Confidence 4568999999988 2 24688889999999999999999999999999999999986 99998765 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|+....+.+||+||+.+...... .. ....++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAAT 399 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999777678899999987532111 01 1235678899999988777755 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 283 (497)
|+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||+ +++..+||||++|++ |.....+++.++.
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999999976 599999999995 788999999999986 5666677766554
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=331.93 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=167.9
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
+++++.|+ ..+.+++|+||++.+| |+++|+||||||||||+++|+|+++|+ +|+. . ....
T Consensus 350 ~~~~~~y~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYP----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLN 414 (608)
T ss_dssp SSSCCEEC----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCC
T ss_pred cceeEEec----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCc
Confidence 44556663 2345799999999999 789999999999999999999999986 7752 1 1246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
++|++|+.......||+|++...... ... ....++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 89999997766667999987643211 111 1245678899999988877754 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHHH
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (497)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||++|||+ .++..+||||++|++ |+++..|++++++.
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999999865 599999999995 789999999999986 89999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=334.69 Aligned_cols=201 Identities=22% Similarity=0.311 Sum_probs=167.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 127 (497)
....|...|+++.| +++.+|+|+||++++|++++|+||||||||||||+|+| |+| +|.+....
T Consensus 432 ~~~~L~~~~ls~~y-----g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~- 494 (986)
T 2iw3_A 432 EGEDLCNCEFSLAY-----GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE- 494 (986)
T ss_dssp SSCEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT-
T ss_pred ccceeEEeeEEEEE-----CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc-
Confidence 34568888999999 45789999999999999999999999999999999995 222 34332111
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHH
Q 010936 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 128 ~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..++|++|+. .+++.+||.|++.+ ... .. ++++.++++.+||. +..++.+ .+|||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHH
Confidence 2478999984 67889999999976 111 11 45688999999995 5666655 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 284 (497)
||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||+. .++..+||++++|++|+++ +.|+.+++..
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999999999988 589999999995 6888999999999999997 6899887654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=332.50 Aligned_cols=208 Identities=26% Similarity=0.303 Sum_probs=139.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------------------DALSSRLASNAF----LSGTILLNGHK 122 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL---------------------~~L~G~~~~~~~----~~G~I~~~G~~ 122 (497)
.+++|+||||+|++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 888888777410 14667777764
Q ss_pred cCC-CcCcEEEEcCCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCHHHHH------HHHHHHHHH
Q 010936 123 TKL-SFGTAAYVTQDDN-------------------LIGTLTVRETISYSARLRLPDKMPWSEKR------TLVERTIIE 176 (497)
Q Consensus 123 ~~~-~~~~i~yv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~ 176 (497)
... ....++||+|... .++.+||.||+.+......... ...... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455555432 2467899999988543221110 000000 111235888
Q ss_pred cCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 010936 177 MGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (497)
Q Consensus 177 lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~--lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~ 253 (497)
+||.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 46654 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 254 PSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 254 ~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+ .. ...||+|++| ++|++++.|+++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 5 44 5569999999 899999999998875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=327.61 Aligned_cols=194 Identities=25% Similarity=0.322 Sum_probs=157.4
Q ss_pred EEE-EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 010936 52 LTW-KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGH 121 (497)
Q Consensus 52 l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I---------~~~G~ 121 (497)
.++ +||++.|. +...+|+||| ++++||++||+||||||||||||+|+|+++|+ +|++ .++|.
T Consensus 21 ~~~~~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYG----VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEEC----CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCc
Confidence 455 58899882 2225899999 99999999999999999999999999999886 7875 45665
Q ss_pred ecC-------CCcCcEEEEcCCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 010936 122 KTK-------LSFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (497)
Q Consensus 122 ~~~-------~~~~~i~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (497)
+.. .....+++++|....++. .||.|++..... .++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~------------~~~~~~~l~~lgl~~~~~~~~---- 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE------------TGKLEEVVKALELENVLEREI---- 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS------------SSCHHHHHHHTTCTTTTTSBG----
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH------------HHHHHHHHHHcCCChhhhCCh----
Confidence 421 112357899997544332 389998864210 134778999999988777755
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||++||+. .++..+||+|++|++|
T Consensus 157 -~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 157 -QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 47999999999999999999999999999999999999999999999988899999999995 6888999999999865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=331.19 Aligned_cols=192 Identities=26% Similarity=0.346 Sum_probs=157.5
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE---------EECCEecCC
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGHKTKL 125 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I---------~~~G~~~~~ 125 (497)
+||++.|. +...+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+...
T Consensus 95 ~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYG----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEEC----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhh
Confidence 78888882 2225899999 99999999999999999999999999999986 7875 456654211
Q ss_pred -------CcCcEEEEcCCCCCCC---CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDDNLIG---TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
....+++++|....++ ..||.|++.... . .++++++++.+||.+..++.+ .+|
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~------~~~~~~~L~~lgL~~~~~~~~-----~~L 229 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------E------VGKFEEVVKELELENVLDREL-----HQL 229 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------C------SSCHHHHHHHTTCTTGGGSBG-----GGC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------H------HHHHHHHHHHcCCCchhCCCh-----hhC
Confidence 1235789998743322 139999986410 0 134778999999988887765 469
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ ..+..+||+|++|+++.
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999999987899999999995 67888999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.16 Aligned_cols=208 Identities=24% Similarity=0.343 Sum_probs=163.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.|.. ..+++|+|+||++++|++++|+||||||||||||+|+|+++|. +|+|+++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46999999998831 1367999999999999999999999999999999999999986 999999863 25
Q ss_pred EEEEcCCCCC----CCCCCHHHHHHHHhhcc------------CC-----------------------------------
Q 010936 130 AAYVTQDDNL----IGTLTVRETISYSARLR------------LP----------------------------------- 158 (497)
Q Consensus 130 i~yv~Q~~~l----~~~lTV~e~l~~~~~~~------------~~----------------------------------- 158 (497)
++|++|++.. ....|+.+++.+..... ..
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997521 23458888876532100 00
Q ss_pred -----------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccc
Q 010936 159 -----------------DKM--------P--------------------------WSEKRTLVERTIIEMGLQDC--ADT 185 (497)
Q Consensus 159 -----------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~ 185 (497)
..+ + .....++++++++.+||.+. .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000 0 00013457889999999753 455
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010936 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 186 ~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.+ .+|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.|+++ |.|||++||++ +.+..+||++
T Consensus 898 ~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 RI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp CG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred Cc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 44 579999999999999999999999999999999999999999888664 67999999995 6788999999
Q ss_pred EEeeCCeEEEEeC
Q 010936 266 YLLSGGKTVYFGE 278 (497)
Q Consensus 266 ~~L~~G~iv~~G~ 278 (497)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=318.46 Aligned_cols=195 Identities=26% Similarity=0.322 Sum_probs=148.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH----------------------cCCCCCCCceeEEEECCEecCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS----------------------SRLASNAFLSGTILLNGHKTKLS 126 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~----------------------G~~~~~~~~~G~I~~~G~~~~~~ 126 (497)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 56899999999999999999999999999998754 22222 46788887653210
Q ss_pred ----------------------------------------------cCcEEEEcCCCCCCC-------------------
Q 010936 127 ----------------------------------------------FGTAAYVTQDDNLIG------------------- 141 (497)
Q Consensus 127 ----------------------------------------------~~~i~yv~Q~~~l~~------------------- 141 (497)
....|+++|+..++|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 001234444333322
Q ss_pred -------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 010936 142 -------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 142 -------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
.+||.||+.+.... . ...++.+.+..+||.. ..++ ++.+|||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHH
Confidence 47999999885421 1 1234567888899864 2344 45679999999999999
Q ss_pred HHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeC
Q 010936 208 EILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGE 278 (497)
Q Consensus 208 aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~ 278 (497)
||+.+| +||||||||+|||+.++..++++|++++++|.|||++||++ .. ...||+|++| ++|++++.|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecC
Confidence 999887 59999999999999999999999999988899999999996 44 4679999999 8999999999
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-33 Score=303.15 Aligned_cols=187 Identities=26% Similarity=0.309 Sum_probs=145.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE-----------EECCEecCC-----CcC--cE
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-----SFG--TA 130 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I-----------~~~G~~~~~-----~~~--~i 130 (497)
...|++++ .+++||++||+||||||||||||+|+|+++|+ +|+| .+.|..... ..+ ..
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhh
Confidence 44677777 68999999999999999999999999999996 7887 233332110 001 12
Q ss_pred EEEcCCCCC------CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 131 AYVTQDDNL------IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 131 ~yv~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.+.+|.... -+..++.+++.... .. ..++++++++.+||.+..++.+ .+|||||||||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~ 231 (608)
T 3j16_B 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFA 231 (608)
T ss_dssp EEECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHH
T ss_pred hhchhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHH
Confidence 334443211 12235666554321 01 1246888999999998888765 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||+|++|++|..++
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999999988899999999995 78999999999999876544
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=296.47 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=139.0
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE-----------EECCEecCC-------CcCcEEEEcCCC---
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-------SFGTAAYVTQDD--- 137 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I-----------~~~G~~~~~-------~~~~i~yv~Q~~--- 137 (497)
.++||++||+||||||||||||+|+|+++|+ +|+| .++|.+... ....+....|..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 5699999999999999999999999999986 8988 567764310 112244444442
Q ss_pred -CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE
Q 010936 138 -NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216 (497)
Q Consensus 138 -~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~ll 216 (497)
.++. .||.+++.... .+++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEE
Confidence 2333 38888764321 01246788999999888887654 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 217 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||||||++||+.++..+.+.|+++++ |+|||++||++ .++..+||+|++|++|..
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 99999999999999999999999976 89999999995 789999999999987643
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=295.69 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=152.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEecCC-----
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------DALSSRLASNA---FLS------GTILLNGHKTKL----- 125 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL---------~~L~G~~~~~~---~~~------G~I~~~G~~~~~----- 125 (497)
...|+|||++|++|++++|+|+||||||||+ +.+.+...+.. ..+ +.|.+++.++..
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44544432210 012 334554433210
Q ss_pred -----------------------------------------CcCcEEEEcCCCCCCC-----------------------
Q 010936 126 -----------------------------------------SFGTAAYVTQDDNLIG----------------------- 141 (497)
Q Consensus 126 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 141 (497)
..+..||+.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012467777766655
Q ss_pred ---------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 010936 142 ---------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (497)
Q Consensus 142 ---------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 212 (497)
.+||.|++.|.... ....++.++|+.+||.... ++ +.+.+|||||||||+|||||+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 36888888875321 1234577899999996421 22 25568999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 213 P---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 213 p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 79999999999999999999999999988899999999995 444 569999999 899999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=300.84 Aligned_cols=208 Identities=25% Similarity=0.310 Sum_probs=158.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCC---------CCCC--Ccee---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRL---------ASNA--FLSG--- 114 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~-G~~---------~~~~--~~~G--- 114 (497)
..|+++|++ ...|+|||++|++|++++|+|+||||||||+++|+ |.+ .++. ...|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 357787774 23699999999999999999999999999999853 211 2221 1224
Q ss_pred ---EEEECCEecCCC------------------------cCcEEEEcCCCCCC----------------------C----
Q 010936 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (497)
Q Consensus 115 ---~I~~~G~~~~~~------------------------~~~i~yv~Q~~~l~----------------------~---- 141 (497)
.|.++|.++... .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 588888764210 02246776643221 1
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 010936 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (497)
Q Consensus 142 ----------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 192 (497)
.+||.|++.|.... .. ..++.++|+.+||.. ..++. +
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~~gL~~~~l~~~-----~ 843 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-------PK--IKRKLETLYDVGLGYMKLGQP-----A 843 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-------HH--HHHHHHHHHHTTCSSSBTTCC-----G
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-------hh--HHHHHHHHHHcCCCcccccCc-----h
Confidence 46788888764321 11 234568899999976 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe-
Q 010936 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L- 268 (497)
.+|||||||||+||++|+.+| +||||||||+|||+.++..+++.|++++++|.|||+++|++ +.+ ..||+|++|
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEc
Confidence 579999999999999999865 99999999999999999999999999988899999999995 454 689999999
Q ss_pred -----eCCeEEEEeCchhHH
Q 010936 269 -----SGGKTVYFGETSAAF 283 (497)
Q Consensus 269 -----~~G~iv~~G~~~~~~ 283 (497)
++|++++.|+++++.
T Consensus 922 p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCCEEEEecCHHHHH
Confidence 789999999998764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=296.71 Aligned_cols=208 Identities=30% Similarity=0.333 Sum_probs=155.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHH-HHcCCC-------C--C----------
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA-LSSRLA-------S--N---------- 109 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~-L~G~~~-------~--~---------- 109 (497)
..|+++|+++ .+|+|||++|++|+++||+|+||||||||+++ |+|.+. | +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4588999864 25999999999999999999999999999996 765431 2 0
Q ss_pred ---CCcee-------EEEECCEecCCCcC------------------------cEEE----------------------E
Q 010936 110 ---AFLSG-------TILLNGHKTKLSFG------------------------TAAY----------------------V 133 (497)
Q Consensus 110 ---~~~~G-------~I~~~G~~~~~~~~------------------------~i~y----------------------v 133 (497)
...+| .|.++|.++....+ ..|| +
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01367 78899876421100 0122 2
Q ss_pred cCCCCCCC------------------------C--------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 010936 134 TQDDNLIG------------------------T--------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (497)
Q Consensus 134 ~Q~~~l~~------------------------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (497)
..+..+++ . +|+.|++.|... . ...+++.++|+.+||..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~ 721 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E---SAIFRALDTLREVGLGY 721 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S---HHHHHHHHHHHHTTCTT
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------c---hHHHHHHHHHHHcCCCc
Confidence 11111121 2 345555444211 1 12246788999999976
Q ss_pred c-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH
Q 010936 182 C-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (497)
Q Consensus 182 ~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~ 257 (497)
. .++ .+.+|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++ ++
T Consensus 722 ~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~ 795 (842)
T 2vf7_A 722 LRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QV 795 (842)
T ss_dssp SBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH
T ss_pred ccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH
Confidence 3 344 4457999999999999999996 799999999999999999999999999988899999999995 56
Q ss_pred HHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 258 VFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 258 i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+ ..||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 6 889999999 799999999998753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=262.30 Aligned_cols=204 Identities=23% Similarity=0.265 Sum_probs=146.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-----------------------------------CCce
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-----------------------------------AFLS 113 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-----------------------------------~~~~ 113 (497)
..+++++|+++.+| +++|+|||||||||||++|+++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999998776421 0126
Q ss_pred eEEEECCEecCC------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-----------------------CCCC---
Q 010936 114 GTILLNGHKTKL------SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----------------------PDKM--- 161 (497)
Q Consensus 114 G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~~--- 161 (497)
|.+++||++... ....+++++|++.++.. +..+...|.-.... ....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998532 12348999999876643 55555444321100 0000
Q ss_pred -C------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 010936 162 -P------------------------------WSEKRTLVERTIIEMGLQDCA----------------DT---VIGN-- 189 (497)
Q Consensus 162 -~------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 189 (497)
. .......+.+.++.+++.... +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 000123344556666654310 00 1110
Q ss_pred ----cccCC-CCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 190 ----WHLRG-ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 190 ----~~~~~-LSgGerqRv~IA~aL~~~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
..++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999997 589999999995 466899
Q ss_pred CeEEEe----eCCeEEEEe
Q 010936 263 DRLYLL----SGGKTVYFG 277 (497)
Q Consensus 263 D~v~~L----~~G~iv~~G 277 (497)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-32 Score=290.02 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=147.1
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-E-EEECCEecCCCcCcEEEEcCCCC---CCCCCCHHH
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-T-ILLNGHKTKLSFGTAAYVTQDDN---LIGTLTVRE 147 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G-~-I~~~G~~~~~~~~~i~yv~Q~~~---l~~~lTV~e 147 (497)
.++|+++++|++++|+||||||||||+|+|+|+..|. +| + |+++|.. .+.++|+||+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 4788999999999999999999999999999999885 89 8 9999832 356899999984 445679999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCE----EEEeC-
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE- 220 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a--L~~~p~l----llLDE- 220 (497)
|+ |+....... . ..+++.++++.+|+.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 654321110 0 0123455677788876554 34799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh-----HHHhcCCe-----EEEee-CCeEEEEeCchhH
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAA 282 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~-----~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 282 (497)
||++||+. ...+.+++++ .|.|+|+++|+..+ ++..+||+ |++|+ +|+++ .|+++++
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 4445544443 37899999999641 56689999 99999 99999 8988765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=234.47 Aligned_cols=84 Identities=33% Similarity=0.467 Sum_probs=77.1
Q ss_pred cccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 190 WHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 190 ~~~~~LSgGerqRv~IA~aL~------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
.++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.++|.|||++||++ . ....||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCC
Confidence 356789999999999999999 79999999999999999999999999999988899999999995 3 478899
Q ss_pred eEEEeeCCeEEE
Q 010936 264 RLYLLSGGKTVY 275 (497)
Q Consensus 264 ~v~~L~~G~iv~ 275 (497)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-29 Score=242.07 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=100.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE--ecCCCcCcEEEEcCCCCCCCCCCH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--KTKLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~--~~~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
.+.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|..... +.....+.++|+||++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46789996 89999999999999999999999999 874 788742111 1112235699999975
Q ss_pred HHHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 146 RETI-SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 146 ~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
+||+ .+.. .... ... .+.++++++. + + ||||||+|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 3444 2211 1110 000 1234455543 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
||+| ++..+++.|+++ ++|+||| +||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~ 158 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDI 158 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCH
Confidence 9999 889999999988 6689999 99995
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=227.64 Aligned_cols=88 Identities=28% Similarity=0.258 Sum_probs=73.6
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE-
Q 010936 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 265 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v- 265 (497)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|+++. +|.|||++||++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 44679999999999999997 5889999999999999999999999999984 489999999995 467899987
Q ss_pred -EEeeCCeE-EEEeCchh
Q 010936 266 -YLLSGGKT-VYFGETSA 281 (497)
Q Consensus 266 -~~L~~G~i-v~~G~~~~ 281 (497)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77887754 44444444
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=214.30 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=101.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCC-CCCCHHHHHHHH
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI-GTLTVRETISYS 152 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~-~~lTV~e~l~~~ 152 (497)
||||++++||+++|+||||||||||++++.+ |...+++. ...++++|++.-. ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998642 11111111 0125666664210 0001112111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA---- 228 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~---- 228 (497)
... ......|.....+. ....|||||||++||++|+.+|++|+|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHH-HHHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 12223454433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 229 ------------AAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 229 ------------~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
....+.+.|++++++|.|+|++||++ +++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 55899999999877799999999995 4443
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-30 Score=260.73 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=146.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|+.|+.++++.++.... + .. .|.. ....|+++||++.| . +.+|+++|++|++
T Consensus 70 ~a~~a~~ri~~~l~~~~~~~~---~-~~-----~~~~---------~~~~i~~~~vs~~y-----~-~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 70 RAETQALSMPAYIKARCKLAT---G-EG-----SWKS---------ILTFFNYQNIELIT-----F-INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHSCHHHHHHHHHHHCC---S-SC-----CTHH---------HHHHHHHTTCCHHH-----H-HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccccccC---C-CC-----cccc---------cCCeEEEEEEEEEc-----C-hhhhccceEEecC
Confidence 577899999999986543211 0 00 0110 01126677888877 2 5699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH-HHHHHhhccCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE-TISYSARLRLPDK 160 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e-~l~~~~~~~~~~~ 160 (497)
|++++|+||||||||||+++|+|++ +|+| ++|++|++.+++. |++| |+.+...
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------ 179 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ 179 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHHhhccCcc------
Confidence 9999999999999999999999997 4777 3467888888775 7886 7766421
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
.+. .+.+.++.+ |.+..+ +..|||||||| ||||+.+|+||| ||+||+.++..+..
T Consensus 180 ~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----
Confidence 111 345556654 454444 24799999999 999999999999 99999999888762
Q ss_pred HhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHh
Q 010936 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 241 ~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (497)
.+|++. ....||+| +|++|++++.|+.+++...|..
T Consensus 235 ---------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 ---------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ---------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 188853 46789999 9999999999999988555544
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-28 Score=253.62 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=138.4
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 69 HNVLEGLTGYAEPGT--------------------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge--------------------~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.+|. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999999886 899999987642 1
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH--HHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIA 206 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~IA 206 (497)
.+|++|++ .++.+|+.|++.++.. +..++++++.+++.+. +.. +. |||| |+||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHHH
Confidence 27899985 5778899988765421 1236788999998754 222 22 9999 99999999
Q ss_pred HHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEeCCCCh-HHHhcCCeEE
Q 010936 207 LEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRLY 266 (497)
Q Consensus 207 ~aL~~----------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvI~~tH~~~~-~i~~~~D~v~ 266 (497)
++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.++||+|.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999984 333 678899998642 2777777764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-25 Score=204.71 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=101.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC--CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
.++|+||||||||||+++|+|++.. ...|... .+.. ...+.++|++|+. ++.+++ + ..+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 5899999999999999999998742 1233211 1111 2235689999975 222222 1 0000 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHH
Q 010936 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAFFVT 234 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a-----L~~~p~lllLDE--PTsgLD~~~~~~i~ 234 (497)
.-.+..+. ++..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 65 ----------------~~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 ----------------TSKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp ----------------CCSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred ----------------Cccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 00012222 456799999999999996 999999999999 99999999999998
Q ss_pred HHHHHHHhCCCEEEEEeC--CCChHHHhcCCeEEEeeCCeEEE
Q 010936 235 QTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~tH--~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
+.|++ .+.|+|+++| +....+..+||+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 4778899986 225678888887 4566654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-27 Score=227.72 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=119.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-CCcCcEEEEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
...+++| .++++|++++|+||||||||||+++|+|+++. ..+.+.+.+.+.. ...+.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 4567888 69999999999999999999999999999852 2333333232211 1234689999998888888887
Q ss_pred HHHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEE
Q 010936 147 ETISYSARLRL---PDKMPWSEKRTLVERT------IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (497)
Q Consensus 147 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lll 217 (497)
+++........ ....+..+.++++++. ++.+|+.+..+. +++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77642211100 0012333444455554 444555444443 334566 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 218 LDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 218 LDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|||||+|| |+..+..+.+.++++.+ .|.|+|++||++ +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999999995 78999999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-25 Score=222.19 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=132.7
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEcCCCC-C
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-L 139 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l 139 (497)
++++|+++++|++++|+||||||||||++.|+|+++|. +|+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999875 89999999874211 135899999988 8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEE
Q 010936 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLF 217 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~--lll 217 (497)
+|.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 89999999999864311 00 12455677776655544 4699 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCC--------hHHHhcCCeEEEeeCCeE
Q 010936 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 218 LDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~--------~~i~~~~D~v~~L~~G~i 273 (497)
|| ||+|||+.++ ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999999865 345554 5899999999421 234456678888888754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-24 Score=217.06 Aligned_cols=170 Identities=17% Similarity=0.153 Sum_probs=132.8
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEcCCCC-CC
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-LI 140 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l~ 140 (497)
..+|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999875 89999999874210 235899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEE
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFL 218 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~--lllL 218 (497)
|.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999999874311 00 12445677776655544 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC--------ChHHHhcCCeEEEeeCCe
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~--------~~~i~~~~D~v~~L~~G~ 272 (497)
| ||+|||+.++. +++.+ .|.|+|++||.. .+.+....+.|..+..|+
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9 99999988653 44544 589999999941 123445567788877775
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-24 Score=215.22 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=96.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
.++|+||||||||||+|+|+|+..|. +|+|.++|.+... ..+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 48999999999999999999999885 8999999987532 24679999999999999999999998864431 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010936 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~ 241 (497)
.+ +.+.+.+. .+..+.. +.+||||||||++|||+++. ++++|||++|||+.. .+.++.+.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 12333332 2222332 34699999999999999876 999999999999987 55666666
Q ss_pred hCCCEEEEEeCCC
Q 010936 242 RDGRTVIASIHQP 254 (497)
Q Consensus 242 ~~g~tvI~~tH~~ 254 (497)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999873
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-25 Score=231.71 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=149.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ecCC--
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~-- 125 (497)
.++++++++.|. ....+|+++ +++.+|++++|+|||||||||||++|+|+.+++ +|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 477888888773 246799999 999999999999999999999999999999886 899999998 3211
Q ss_pred --------CcCcEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 010936 126 --------SFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 --------~~~~i~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (497)
..+.++|++|+ ..+++.+||.+|+.+.+...... .+ ......| .+..+|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld------~l~~lS 260 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMD------SLTRYA 260 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEE------CHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHH------hHHHHH
Confidence 13568999995 55677889999998865431000 00 0001112 134699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEeCCCChHHHhcCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
+|| |||+|| +.+|++ |+|||+.+...+.+++.++.+ + |. ||++++||.. ..+||++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999876 3 74 9999999974 578999999
Q ss_pred eeCCeEEEEeCchhH
Q 010936 268 LSGGKTVYFGETSAA 282 (497)
Q Consensus 268 L~~G~iv~~G~~~~~ 282 (497)
|.+|+++..|++.++
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999877654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=201.39 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=77.0
Q ss_pred CcccC-CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHH
Q 010936 189 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (497)
Q Consensus 189 ~~~~~-~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i 258 (497)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 34556 79999999999999999 8999999999999999999999999998873 699999995 3 2
Q ss_pred HhcCCeEEEeeCCeEEEEeCchhH
Q 010936 259 FELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 259 ~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-23 Score=211.21 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcCcEEEEcCCCCCCCCCCHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
+++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|.+... ..+.++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999885 8999999864110 011122221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
+ |||+||++||+||..+|++++|||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.++.+.|+.+...+.|+|+++|+++ +.+.|||+++|.+|.
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2456777777654558999999964 788899999998775
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-21 Score=193.46 Aligned_cols=77 Identities=30% Similarity=0.332 Sum_probs=69.9
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCe
Q 010936 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 191 ~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 56789999999 66778888889999999999999999999999999999877789999999994 47899999
Q ss_pred EEEee
Q 010936 265 LYLLS 269 (497)
Q Consensus 265 v~~L~ 269 (497)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-21 Score=219.63 Aligned_cols=162 Identities=23% Similarity=0.325 Sum_probs=124.4
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC-C-HH---HHHHHHHH
Q 010936 98 LLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM-P-WS---EKRTLVER 172 (497)
Q Consensus 98 LL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~-~-~~---~~~~~v~~ 172 (497)
+..|..+++++. .|+|.++|+++.. +..+||.+++.|.......... . .. .......+
T Consensus 384 C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 344555666664 7999999987522 3446888888886544322110 0 00 11123456
Q ss_pred HHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 010936 173 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249 (497)
Q Consensus 173 ~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~--lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~ 249 (497)
.|..+||... .++.+ .+|||||||||+||++|+.+|+ +|||||||+|||+.....+++.|++++++|.|||+
T Consensus 447 ~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7888999754 46544 5799999999999999999887 99999999999999999999999999888999999
Q ss_pred EeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 250 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 250 ~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
++||+ +. ...||+|++| ++|++++.|+++++.
T Consensus 522 VtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 522 VEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp ECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 99995 44 4569999999 899999999998875
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-25 Score=215.98 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=99.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------CcCcEEEEcCCCCCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~ 142 (497)
+.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ..+.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 77888 764311 12467899998766654
Q ss_pred CCH-HHHHHH---HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH-----HHHHHhCC
Q 010936 143 LTV-RETISY---SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI-----ALEILMRP 213 (497)
Q Consensus 143 lTV-~e~l~~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I-----A~aL~~~p 213 (497)
++. .+++.+ ....+ +.+ ...++++++...+ ..+. ..|||||+||++| +++|+.+|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 321 111111 11110 111 1235566654332 1111 3699999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 010936 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~ 242 (497)
++++|||||+++|..+...+.+.|.++.+
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=203.43 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=71.3
Q ss_pred ccCCC-CHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE
Q 010936 191 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 191 ~~~~L-SgGerqRv~IA~aL~~~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++ . +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEE
Confidence 35667 999999999999999999 99999999999999999999999999987 89999999995 3 5567999999
Q ss_pred eeCC
Q 010936 268 LSGG 271 (497)
Q Consensus 268 L~~G 271 (497)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-22 Score=198.94 Aligned_cols=183 Identities=12% Similarity=0.114 Sum_probs=119.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-EEEECCEecCC--CcCcEEEEcCCCCCCCCCCH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G-~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV 145 (497)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ..+++.++.+... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 56899999999999999999999999999999999998764 46 66544322110 0112222333221 122
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHHhCCCEEEEeCCCC-
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILMRPRLLFLDEPTS- 223 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~~~p~lllLDEPTs- 223 (497)
.+++.... + +..+..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++|+||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33333221 1 1122233344444322221 111 123588998 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCCC-h--------------------HHHhcCCeEEEeeCCeE
Q 010936 224 --G---LDS-AAAFFVTQTLRCLSRD-GRTVIASIHQPS-S--------------------EVFELFDRLYLLSGGKT 273 (497)
Q Consensus 224 --g---LD~-~~~~~i~~~L~~l~~~-g~tvI~~tH~~~-~--------------------~i~~~~D~v~~L~~G~i 273 (497)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+..+||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6678899999999875 999999999951 3 57889999999998874
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-22 Score=226.33 Aligned_cols=172 Identities=18% Similarity=0.115 Sum_probs=121.4
Q ss_pred EEEEEe-----EEEEEEccCCcccceeeceEEEEeC-------CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010936 51 RLTWKD-----LTVMVTLSNGETHNVLEGLTGYAEP-------GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 51 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
.|+++| |++.+. +.+.+++|++|.+++ |++++|+||||||||||||+| |++.+.
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 489999 888773 246799999999987 999999999999999999999 886531
Q ss_pred CCEecCCCcCcEE-EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 119 NGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 119 ~G~~~~~~~~~i~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.++| ||||+.. .+||.|++.. .+|+.+.... ....+|+
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~-----~~stf~~ 854 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMS-----GESTFFV 854 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEEE------------------------ECC--------------CHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhh-----chhhhHH
Confidence 1234 8999753 4455554310 1122221111 1235778
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV- 274 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv- 274 (497)
++++ +++|++++.+|+++||||||+|+|+... ..++..|+.++++ |.++|++||+. +.+..++|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 7765 9999999999999999999999999985 5578899999876 99999999995 6777789999887 48887
Q ss_pred -EEeCch
Q 010936 275 -YFGETS 280 (497)
Q Consensus 275 -~~G~~~ 280 (497)
+.|+++
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 445543
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-23 Score=209.11 Aligned_cols=123 Identities=18% Similarity=0.111 Sum_probs=98.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
+++|+++||+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 7999999999999999999999999998773 332 458999999999988 99999865321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
.+.+.....+.+.+.|+.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222222355777888887 44444433 47999999999999999999999999999999986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=204.32 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=119.9
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 76 s~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
++.+.+|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. ..+.++.. .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~~---~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNAY---SW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHHH---TT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHHH---Hc
Confidence 558999999999999999999999999998765 232 12456677641 12333221 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HH
Q 010936 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AA 230 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~-----~~ 230 (497)
+.. +++ +...|+....+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 122 112 224566554443 45679999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCC---------hHHHhcCCeEEEeeCCe
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLSGGK 272 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~---------~~i~~~~D~v~~L~~G~ 272 (497)
..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999961 45678999999999886
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-22 Score=193.39 Aligned_cols=177 Identities=12% Similarity=0.097 Sum_probs=108.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
+.+.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 222233 1235789999985 77789999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD 226 (497)
+++.+....... ..+.....+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 999876443211 001111122344455443 233343 345799999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH-hcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF-ELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~-~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.. +.++ .+.+|++++|+. ..+. .+++++ .+|+ +.+++..
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 63 1222 378999999973 3343 334434 5564 4555544
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-22 Score=202.13 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=138.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..++.+++++.|. ....+|+++ +++.+|++++|+||||||||||+++|+|..+|+ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHH
Confidence 3478888988883 246799999 999999999999999999999999999999886 8999999874110
Q ss_pred --------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..+.+.+++|.+. +..+.+...... ..+.+.....+ .+... .+ ..+..||+
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~~~~lS~ 174 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DSVTRYAR 174 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ETHHHHHH
T ss_pred HHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hhHHHHHH
Confidence 1234677777532 233332211100 00111111111 11100 00 13457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|| |||++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.. ..+||++++|.+
T Consensus 175 g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d 241 (347)
T 2obl_A 175 AA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD 241 (347)
T ss_dssp HH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS
T ss_pred HH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC
Confidence 99 899999 688877 999999999999999999874 487 9999999964 567999999999
Q ss_pred CeEEEEeCchhH
Q 010936 271 GKTVYFGETSAA 282 (497)
Q Consensus 271 G~iv~~G~~~~~ 282 (497)
|+++..|+.++.
T Consensus 242 G~Ivl~~~l~~~ 253 (347)
T 2obl_A 242 GHIVLTRELAEE 253 (347)
T ss_dssp EEEEBCHHHHTT
T ss_pred cEEEEeCCHHHc
Confidence 999998877654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=203.32 Aligned_cols=135 Identities=27% Similarity=0.370 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHhhccCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 141 GTLTVRETISYSARLRLPDK---MPW---SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
..|||.|++.|...+.++.. +.. ++..+++ +.|..+||... .++.+ .+|||||+|||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 45899999999766543210 000 2344555 45889999764 57655 479999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 214 --~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
++|||||||+|||+.....+++.|++|++.|.|||+++|++ ++ ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999995 44 5689999999 799999999998764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-23 Score=224.71 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=116.5
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCChHHHHHHH--HHcCCCCCCCceeEEEECCEecCC----CcCcEEEEcCCCCCC
Q 010936 68 THNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDA--LSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLI 140 (497)
Q Consensus 68 ~~~iL~~vs~-~i~~Ge~~aIlG~nGaGKSTLL~~--L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~ 140 (497)
...+|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|.|+++|.+... ..+.+||++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4679999999 999999999999999999999999 78998875 8999999976321 124578999874322
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
++ +.+ ..... .. ...++++.++|.+..+.. ++.|||| +|++++|||
T Consensus 101 ~~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP--DP-----EGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecCc--cc-----chhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEECC
Confidence 11 100 00000 00 001111222222222221 1235554 588999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH--------HHhcCCeEEEeeC
Q 010936 221 PTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLYLLSG 270 (497)
Q Consensus 221 PTs-----gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~--------i~~~~D~v~~L~~ 270 (497)
||+ +||+..+..+.++++.+++.|+|||+++|++... +..+||+|++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999988899999999997431 3456999999998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-20 Score=209.34 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=119.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHH--------HcCCCCCCCceeEEEECCEe
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL--------SSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L--------~G~~~~~~~~~G~I~~~G~~ 122 (497)
.+.+++...-+-....+.+.+++|+++.+++|++++|+||||||||||||++ .|...|. ++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~------ 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE------ 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc------
Confidence 3555554432211111245789999999999999999999999999999999 4433331 1110
Q ss_pred cCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 123 ~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
++.+ +.+ +..+|+.+. ..+++|+|++++
T Consensus 702 -------~~~~---d~i----------------------------------~~~ig~~d~--------l~~~lStf~~e~ 729 (934)
T 3thx_A 702 -------VSIV---DCI----------------------------------LARVGAGDS--------QLKGVSTFMAEM 729 (934)
T ss_dssp -------EECC---SEE----------------------------------EEECC-----------------CHHHHHH
T ss_pred -------chHH---HHH----------------------------------HHhcCchhh--------HHHhHhhhHHHH
Confidence 1100 001 111222111 113588888888
Q ss_pred HHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 203 VSIALEI--LMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 203 v~IA~aL--~~~p~lllLDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
+.+|++| +.+|+++||||||+|||+.....+ +.+++.+.+ .|.++|++||+. ++..+||++..+.+|++...++
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEec
Confidence 8888888 899999999999999999999888 677788876 499999999993 5778999999999999998887
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
.+++.
T Consensus 808 ~~~l~ 812 (934)
T 3thx_A 808 EETLT 812 (934)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 76653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-20 Score=205.33 Aligned_cols=172 Identities=20% Similarity=0.213 Sum_probs=126.6
Q ss_pred CCCChHHHHHHHHHcCCCCC------CCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-----
Q 010936 90 PSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP----- 158 (497)
Q Consensus 90 ~nGaGKSTLL~~L~G~~~~~------~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----- 158 (497)
.+..||++|.+.+....-|. ...+|+|.++|+++... ..+++.|.+.|.......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~--------------~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL--------------SRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH--------------HHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH--------------hhcCHHHHHHHHHhhhhhhhhcc
Confidence 35679999999887643221 01367888888764211 013444444443332100
Q ss_pred ---CCC--C--------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCC
Q 010936 159 ---DKM--P--------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPT 222 (497)
Q Consensus 159 ---~~~--~--------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p--~lllLDEPT 222 (497)
... . ..+...+++ .+..+||.+. .++.+ .+|||||||||.||++|..+| .+|+|||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT 409 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPS 409 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcc
Confidence 000 0 123445565 6888999764 56654 479999999999999999999 599999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+|||+.....++++|++|++.|.|||+++|++ + +...||+|++| ++|++++.|+++++.
T Consensus 410 ~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 410 AGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999999999999988899999999995 4 56789999999 799999999988764
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=161.49 Aligned_cols=82 Identities=28% Similarity=0.314 Sum_probs=73.6
Q ss_pred cccCCCCHHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 190 WHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 190 ~~~~~LSgGerqRv~IA------~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
..+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|+++.++|.|||++||++ ++..+||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 45678999999999876 899999999999999999999999999999999877789999999995 4678999
Q ss_pred eEEEe--eCCeE
Q 010936 264 RLYLL--SGGKT 273 (497)
Q Consensus 264 ~v~~L--~~G~i 273 (497)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-20 Score=180.30 Aligned_cols=154 Identities=21% Similarity=0.168 Sum_probs=96.3
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC----CceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~----~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++.... ..+.+++++|...+++. |+.||+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 5799999999999999999999999999544310 01346666554210 01123333333333222 232222111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHHh-------CCCEEEEeCCCCC
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILM-------RPRLLFLDEPTSG 224 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~~-------~p~lllLDEPTsg 224 (497)
...++++ ++.+..+.+++. +|+++++||||++
T Consensus 98 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 98 ----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1233333 333555666655 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCC---hHHHhcCCeEEEeeCCe
Q 010936 225 LDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 272 (497)
Q Consensus 225 LD~~-------~-----~~~i~~~L~~l~~-~g~tvI~~tH~~~---~~i~~~~D~v~~L~~G~ 272 (497)
||+. . ...+++.|+++++ .|.|||+++|... ..+...||++++|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 2378888888866 4999999999532 23778899999998653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-20 Score=180.74 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=99.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 9999999999999999999999999998762 1799999886542 333321100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.. . ..+|+.. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0123321 123 899999999999999999999 9988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
...++ +. +..|.+|++++|+.. +...||+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66544 33 356999999999953 6788999988854
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-19 Score=198.40 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=104.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+++|||+++++|++++|+||||||||||||++++..-.. ..|. .... .-+.++.-+.++..+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~ig~-- 725 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTRMGA-- 725 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHhCCh--
Confidence 467999999999999999999999999999999998642110 0110 0000 00111111112222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
.+.... ..+.+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 726 --------------------------------~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 726 --------------------------------ADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred --------------------------------HHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 111111 224689999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEE-eeCCeEEE
Q 010936 228 AAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVY 275 (497)
Q Consensus 228 ~~~~~i~-~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~-L~~G~iv~ 275 (497)
.....+. .+++.+.+ .|.|+|++||+. ++.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 9999987 77788866 599999999994 45666665421 33444433
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-19 Score=201.70 Aligned_cols=146 Identities=22% Similarity=0.168 Sum_probs=106.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~-~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
.+.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------ehhccceeeHHH---hhccCCHH
Confidence 36789999999 99999999999999999999999863 32 45432 111234667665 45555655
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~p~lllLDEP--- 221 (497)
||+. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 13799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 222 TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 222 TsgLD~~~~-~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|++||+.+. ..+++.|.+ .|.|+|++||+. ++..++ .-.+.++++....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 999999875 567877765 489999999994 455665 2223445554443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-20 Score=187.42 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=86.9
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC-CCCCCCceeEEEECCEecCC--CcCcEE
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKL--SFGTAA 131 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~--~~~~i~ 131 (497)
.||++.| +.+.++++++|+| +|+||||||||||+++|+|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3677777 4577999999988 99999999999999999997 6664 78 8888865421 234578
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|.+.+...+||.|+..++..... .+..+..++.+. +..+. +++++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE-
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh-
Confidence 99999888888999999887643210 000011111111 11222 44579999999999998875
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCC
Q 010936 212 RPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTs-gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~ 255 (497)
++++||||+ |||+... +.++++.+. +.++|++.||..
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999998 5999873 566666554 789999999964
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-21 Score=184.49 Aligned_cols=145 Identities=19% Similarity=0.164 Sum_probs=113.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCC--CCCCHHHHHHHHhhcc
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSARLR 156 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~~~ 156 (497)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ +.+|+.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 478999999999999999999999997642 478999998776 56899988765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH----HHHHHHHHHHHhCCCEEEEeCCCCC-------C
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------L 225 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~IA~aL~~~p~lllLDEPTsg-------L 225 (497)
.+ .....+.+.+.++.+++.+..+.+ +..+|+|| +||+++|++++.+|.++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 111234566777888876655543 34689996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEeCCC
Q 010936 226 DSAAAFFVTQTLRCLS-RDGRTVIASIHQP 254 (497)
Q Consensus 226 D~~~~~~i~~~L~~l~-~~g~tvI~~tH~~ 254 (497)
|+.....+.+.+++.. +.|.|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998864 5689999999974
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-19 Score=199.55 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=110.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+++|+|++ ++|++++|+||||||||||||+|+|+.... ..| .........+++++| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 45799999999 999999999999999999999999974221 112 111111123455444 455555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
++... + +.+|+|+++ ++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44211 1 136677654 4555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 228 AAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 228 ~~~~~i-~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
.....+ +..++.+.+ .|.++|++||+. ++..+||++..+.+|++.+....
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 888776 788888887 499999999995 45678998888888888766543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-19 Score=179.41 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=107.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEcCCCCCCCCCCHHHHH
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
+|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... +..++|++|++.++|.++|++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999885 89999999874211 13589999999999989999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.++...... ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~d------------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGYD------------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTCS------------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCCC------------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 876321100 001222343322221 2455568999999999999994444 455555
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCC
Q 010936 230 AFFVTQTLRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 230 ~~~i~~~L~~l~~~-g~tvI~~tH~~ 254 (497)
...+++.++++.+. |.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 55677777777664 89999999984
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-19 Score=185.75 Aligned_cols=167 Identities=21% Similarity=0.170 Sum_probs=103.5
Q ss_pred ceeece-EEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCC-CceeE-EEECCEecCCCcCcEEEEcCCCCCCCCCC
Q 010936 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNA-FLSGT-ILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~-~~~G~-I~~~G~~~~~~~~~i~yv~Q~~~l~~~lT 144 (497)
..|+.+ ++.+++|++++|+||||||||||++.|++.. +|.. ...|. |++++.+.. ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 356665 6899999999999999999999999999987 4420 01267 788775431 12345556665544332 3
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-------hCCCEEE
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-------MRPRLLF 217 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-------~~p~lll 217 (497)
+.+|+.+... .-|.+++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 3333322100 01456667777777776 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 218 LDEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 218 LDEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
+||||++||+.. ...++..|+++++ .|.|||+++|.. ......++....+..|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 999999999852 3566777777766 589999999985 34444455555666666554443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-20 Score=200.77 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=115.9
Q ss_pred EEEEEeEEEEEEccCCcccceeece----------EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGL----------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
.++++||+..|.. ..+++|+.+ ++.++. ++|+|||||||||||++|+|+..|. .+|.|+++|
T Consensus 10 ~i~~~~l~~~~~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCP 81 (608)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSC
T ss_pred hhhhhhhhHHHHH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcC
Confidence 4788889888842 123344433 355554 9999999999999999999998772 289999999
Q ss_pred EecC--------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 010936 121 HKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (497)
Q Consensus 121 ~~~~--------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (497)
.++. ..++.++|++|+..+++.+||+||+.++........ .++. +
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~-------- 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H-------- 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S--------
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h--------
Confidence 8731 123568999999999999999999987643210000 0111 0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCh---H---H
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPSS---E---V 258 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEP------TsgLD~~~~~~i~~~L~~l~~--~g~tvI~~tH~~~~---~---i 258 (497)
+++.++.+....|+++|+||| |+|||+..+..+.++++++.+ .+.++++++|+... + +
T Consensus 135 --------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 135 --------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp --------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred --------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 111122223458999999999 999999999999999999754 37788999998531 1 1
Q ss_pred Hhc-----CCeEEEeeCCeEEEEeCchhHH
Q 010936 259 FEL-----FDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 259 ~~~-----~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+. ...|+++.++.++..|+.+++.
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 221 2457888888887777665443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-18 Score=164.20 Aligned_cols=171 Identities=14% Similarity=0.066 Sum_probs=109.3
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~-~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
....|+++.+ .+++|++++|+||||||||||++.|++...+. .|.|.+.+.+. +..
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~--------------------~~~ 64 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE--------------------SRD 64 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS--------------------CHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc--------------------CHH
Confidence 3557888886 89999999999999999999999999876542 45555433211 111
Q ss_pred HHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCC
Q 010936 147 ETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTS 223 (497)
Q Consensus 147 e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~--lllLDEPTs 223 (497)
+............. .... ....++.....++ ... .....|.++.++...+.....+|+ ++++||||+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 65 SIIRQAKQFNWDFEEYIEK-KLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHHTTCCCGGGBTT-TEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHHhcchHHHHhhC-CEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 11110000000000 0000 0000000000000 000 112359999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCC-------hHHHhcCCeEEEeeCC
Q 010936 224 GL--DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (497)
Q Consensus 224 gL--D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~-------~~i~~~~D~v~~L~~G 271 (497)
++ |+.....+++.|+++++ .|.|||+++|+.. ..+..+||+|++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 99999999999999975 5999999999962 3478899999999754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-20 Score=171.37 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=103.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
|++++|+||||||||||+++|+|+++ . +| |.++|.+.. ...+.++|++|+. .... +++ +.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--
Confidence 78999999999999999999999987 4 78 988887542 2346789999975 1111 111 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHH
Q 010936 159 DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV-SIAL---EILMRPRLLFLDE--PTSGLDSAAAF 231 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~IA~---aL~~~p~lllLDE--PTsgLD~~~~~ 231 (497)
++..+ ..+..+|. +...+|+|||+++ ++++ |++.+|++||+|| |+..+|.....
T Consensus 66 ------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 66 ------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp ------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred ------------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 01111 11223443 4456999999988 4444 5799999999999 89999987544
Q ss_pred HHHHHHHHHHhCCCEEEE----EeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 232 FVTQTLRCLSRDGRTVIA----SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~----~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
.+ .++.+...++|+ ++|+.. ..+.|+|..+.+|+++.-
T Consensus 127 ~l----~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 127 AV----RQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HH----HHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred HH----HHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 44 444444445553 238842 346777777888888764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-17 Score=160.73 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=104.6
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (497)
-+++|++++|+||||||||||++.|++... .|.+. .|.+... ...+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 478999999999999999999999998653 35553 3443221 2457788766432 01112211 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---HH
Q 010936 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FF 232 (497)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs--gLD~~~~---~~ 232 (497)
.... ....++++.+++.+..+. .+..||+||++++ ++++.+|+++++||||+ ++|.... ..
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 235567788888766554 3457999998865 68889999999999999 9998544 88
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCC
Q 010936 233 VTQTLRCLSR-DGRTVIASIHQP 254 (497)
Q Consensus 233 i~~~L~~l~~-~g~tvI~~tH~~ 254 (497)
+++.|+++++ .|+|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8899999875 599999999995
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=171.37 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=92.7
Q ss_pred ceeeceEE-------EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cCcEEEEcCCCCCCC
Q 010936 70 NVLEGLTG-------YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIG 141 (497)
Q Consensus 70 ~iL~~vs~-------~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~ 141 (497)
..|+++.+ ...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|......
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~ 181 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRD 181 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTT
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccc
Confidence 34555554 67899999999999999999999999998763 146665443332211 112234444321111
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
. ++-.+ +||++|..+|++|++|||
T Consensus 182 ~----------------------------------------------------~~~~~----~La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 182 T----------------------------------------------------LGFSE----ALRSALREDPDIILVGEM 205 (356)
T ss_dssp B----------------------------------------------------SCHHH----HHHHHTTSCCSEEEESCC
T ss_pred c----------------------------------------------------CCHHH----HHHHHhhhCcCEEecCCC
Confidence 1 12111 899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
| |..+ ++.+.+++..|+|||+++|+.+ . ...+||++.|..|
T Consensus 206 ~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 206 R---DLET----IRLALTAAETGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp C---SHHH----HHHHHHHHHTTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred C---CHHH----HHHHHHHHhcCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 9 6555 4444455667999999999964 4 4889999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-18 Score=181.60 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=97.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|.++||++.| +.+.+++|+||+| +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 48889998887 3577999999998 99999999999999999998764311 2222222211 1112457
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++|||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 89999988888899999988864321 0000011212221 135677788999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 211 MRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 211 ~~p~---lllLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|..
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9999 99999999 69998873 44455544 68888888763
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=150.41 Aligned_cols=174 Identities=12% Similarity=0.087 Sum_probs=99.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCceeEEEECCEecCCC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKLS 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~-----~~~~~~~G~I~~~G~~~~~~ 126 (497)
|+++|+++.|. ..+|++ +.+.+|..++|+|+||||||||++.|+|.. .| ..|.+.+.+.-.. .
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~~-~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFEV-A 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEE-E
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEEe-c
Confidence 78999999983 357888 889999999999999999999999999987 44 3566544221000 0
Q ss_pred cCcEEEEcCCCCCC----CCCC---HHHHHHHHhhc-c----------CCCCCCHHHHHHHHHHHHHHcCCCcc-ccccc
Q 010936 127 FGTAAYVTQDDNLI----GTLT---VRETISYSARL-R----------LPDKMPWSEKRTLVERTIIEMGLQDC-ADTVI 187 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~----~~lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v 187 (497)
...- +.+.+.+. +.-. .+..+...... . ...... .....+.+++...++... ..++
T Consensus 72 -~~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~nK- 146 (210)
T 1pui_A 72 -DGKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLVLLTK- 146 (210)
T ss_dssp -TTEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred -CCEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEEEEec-
Confidence 0011 11111110 0000 11122221110 0 001111 122345566666776543 1332
Q ss_pred cCcccCCCCHHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 010936 188 GNWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246 (497)
Q Consensus 188 g~~~~~~LSgGerqR-v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 246 (497)
...+|+||+|| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 147 ----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 147 ----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 34699999999 89999999999999999999999999999999999998766544
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=139.95 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
.+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+. .+...||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 346799999999999999974 4699999999999999999999999999865 46899999994 5778999998
Q ss_pred Eee--CCe
Q 010936 267 LLS--GGK 272 (497)
Q Consensus 267 ~L~--~G~ 272 (497)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 664
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-17 Score=159.41 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=99.2
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcEEEEcCCCCCCCCCCH----HHHH
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTV----RETI 149 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV----~e~l 149 (497)
-.-..++|++++|+||||||||||+++|+|+.+|. ..+|.|.+.+.+... ..+.++|++|++..|+.+++ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 34457899999999999999999999999998752 258999998876432 23457899997655544433 1221
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. |+. .+.| +++ +..++..++++||| ||+.+
T Consensus 88 ~~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 000 0112 121 34555668999999 99999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
+..+.+.+. ++.||++++|++ .++.+ |+ +..| .++++++...+
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 999999875 589999999995 44544 43 6777 56777766544
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=142.08 Aligned_cols=155 Identities=21% Similarity=0.163 Sum_probs=101.0
Q ss_pred cceeeceE-EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 69 HNVLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 69 ~~iL~~vs-~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
...|+++. +-+++|++++|+||||||||||++.|++ ..+ .+ +.|+..+..+ +...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~---------------v~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KK---------------VAYVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SE---------------EEEEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---Cc---------------EEEEECCCCC----CHHH
Confidence 34577776 3799999999999999999999999998 221 22 2333333211 2211
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH--HHHHHHHHHHHhC-CCEEEEeCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--RRRVSIALEILMR-PRLLFLDEPTSG 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~IA~aL~~~-p~lllLDEPTsg 224 (497)
-....... .... +++++.+. +...|+++ ++++..+++++.+ |+++++||||++
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111110 1111 11222221 11345554 5788888999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCEEEEEeCCCCh------------HHHhcCCeEEEeeCC
Q 010936 225 LDSAA--------AFFVTQTLRCLSRD-GRTVIASIHQPSS------------EVFELFDRLYLLSGG 271 (497)
Q Consensus 225 LD~~~--------~~~i~~~L~~l~~~-g~tvI~~tH~~~~------------~i~~~~D~v~~L~~G 271 (497)
+|+.. ...+++.|++++++ |.|||+++|.... .+...||.+++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 34566668888764 8999999998531 467899999999744
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-19 Score=165.52 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=112.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|++++|+||||||||||+++|++ +. +|.+.++|.+.... ...++++|.....+.+++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 68999999999999999999997 32 68899998654221 234566765544455678888776543210
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--CHHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHH
Q 010936 162 PWSEKRTLVERTIIEMGLQDCADTVIGN---WHLRGI--SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~IA~------aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
. -+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0100011110000 011234 888888888888 8999998888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
.. ++.+..+.+.+.++|.++|. + +++.++||+|+ ++|+++..|+++-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC-----
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCc
Confidence 88 88888876667899999998 6 56889999998 9999999988754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-17 Score=154.73 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=94.4
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +.+||.+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 799999987531 11223567777543 45688898877543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
.....+.. ..++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 21000000 00000011111111110 0 1123469999999999999999999876 6888887777
Q ss_pred HHHHHHHhCCCEEEEEeC
Q 010936 235 QTLRCLSRDGRTVIASIH 252 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~tH 252 (497)
+.++.+...+..+|.+++
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 777665433333444433
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-18 Score=179.49 Aligned_cols=167 Identities=15% Similarity=0.031 Sum_probs=102.6
Q ss_pred eeeceEEEEeC--CeEEEEECCCCChHHHHHHHHHcCCCCCCCce----eEEEECCEecCCCcCcEEEEcCCCCCCCCCC
Q 010936 71 VLEGLTGYAEP--GTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 71 iL~~vs~~i~~--Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~----G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lT 144 (497)
+.+.|++.|.+ |+.++|+||||||||||+++|+|++++. + |+|++++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 46789999999 9999999999999999999999999884 6 6665532100 0000111112
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHHHHHHHHHHH-hCCCEEEEeC-
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPRLLFLDE- 220 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-~~p~lllLDE- 220 (497)
. +++.+.... .......+.+.+ +..+..++ .+..+|+|++||..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 333332110 000000000000 00111111 12246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 221 --PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 221 --PT------sgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|+ .++|+..+..+.+.|+++.+ .|.+||+++|. .+..+++|++.+|+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Confidence 65 58999999999999998765 48999999975 35667777666554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-17 Score=168.46 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=116.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
+++++ ++.| +..+ |++||+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ........+.
T Consensus 17 l~~~~-~~~y-----~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGF-----DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-C-----C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEE
T ss_pred EEEee-EEEE-----CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEee
Confidence 45555 5555 2345 9999999999999 99999999999999999999842 222111 0011111246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CcccCC
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS----EKRTLVERTIIEM-GLQD----CADTV----IG--NWHLRG 194 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~----~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~ 194 (497)
++|++|++.+++.+||.||+.|+.... ....+. .......+.+... ++.. ..|+. +. .....+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999999888899999987753211 000001 1233455556554 4431 12322 11 001135
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 253 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvI~~tH~ 253 (497)
|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 66666 7899999999999999999999999999999999986 77789999988764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-15 Score=154.81 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=99.5
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CC--CcCcEEEEc-CCCCCCCCCCHHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVT-QDDNLIGTLTVRE 147 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~--~~~~i~yv~-Q~~~l~~~lTV~e 147 (497)
++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|... .. ..+.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999885 89999998531 11 235678888 55331
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222355566666777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.++.+.|+.+...+.|++.++|..+ ....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777554568899999953 678899999887663
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-15 Score=156.19 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=95.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
+|++++ +++|++++|+||||||||||+++|+|++++. .+|.|.+.|.+... ....++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999998762 16999877655432 123466777731
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 0124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
... .++. +..|.+|+.++|+. .+...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 433 3443 35689999999994 3778889887764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-17 Score=162.86 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=100.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHH---cCCCCCCCceeEEEECCEecCCC-cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~---G~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
++++++|+||||||||||+++|+ |+..++ +|+|.++|.+.... ...+.+++|+..+++.+++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 998774 79888877542111 123455678888888889999998754210
Q ss_pred C-----CCCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCcccCCCCHHHHHHHHHHHHH-HhCCCEEEEe--
Q 010936 157 L-----PDKMPWSEKRTLVERTIIEMGLQ--DCA-------DTVIGNWHLRGISGGERRRVSIALEI-LMRPRLLFLD-- 219 (497)
Q Consensus 157 ~-----~~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSgGerqRv~IA~aL-~~~p~lllLD-- 219 (497)
. -.+.+... ..++.+....... -.. -..+.+..+..||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 00111111 1122222111111 000 01111224457999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhCC
Q 010936 220 --EPTSGLDSAAAFFVTQTLRCLSRDG 244 (497)
Q Consensus 220 --EPTsgLD~~~~~~i~~~L~~l~~~g 244 (497)
|||+|||+.+...+.+.|+++.+++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=138.81 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=88.9
Q ss_pred eeceE-EEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCC--CCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH
Q 010936 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS--RLASN--AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 72 L~~vs-~~i~~Ge~~aIlG~nGaGKSTLL~~L~G--~~~~~--~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
|+.+- +-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.. .+ ...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~ 73 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPE 73 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHH
Confidence 44432 5689999999999999999999999999 44431 0014555555432 10 111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH-HHHHHHHH--hCCCEEEEeCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEIL--MRPRLLFLDEPTS 223 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~IA~aL~--~~p~lllLDEPTs 223 (497)
+.......+ .... +++++.+. .....+..+... +.-+.+++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~----g~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERY----GLSG-------SDVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHT----TCCH-------HHHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHc----CCCH-------HHHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 111111111 1111 11222111 112345555432 33334444 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEeCCCChHH-------------------HhcCCeEEEeeCC
Q 010936 224 GLDSA-------A-----AFFVTQTLRCLSRD-GRTVIASIHQPSSEV-------------------FELFDRLYLLSGG 271 (497)
Q Consensus 224 gLD~~-------~-----~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i-------------------~~~~D~v~~L~~G 271 (497)
.+|+. . ...++..|++++++ |.|||+++|... +. ..+||.+++|+.|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34566667777664 999999999642 22 2279999999865
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-17 Score=147.57 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=65.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+++++||++++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++........|++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 467899999999999999999999999999999999998 74 8999999976421111012799998888 899999
Q ss_pred HHHH
Q 010936 148 TISY 151 (497)
Q Consensus 148 ~l~~ 151 (497)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-14 Score=148.49 Aligned_cols=121 Identities=19% Similarity=0.112 Sum_probs=88.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCceeEEEEC-CEecC-CCcCcEEEEcCCCCCCCCCCHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLN-GHKTK-LSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~-~~~~~~G~I~~~-G~~~~-~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.++++++. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... .....++|++|+..++++++|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 46666664 4899999999999999999999999988 75 8999987 75432 23357899999998898889988
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
+ . + ..++..+....+.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 1 1 13455566677888899999987777644 5799 999999999864
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=142.76 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=67.4
Q ss_pred ccCCCCHHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 191 HLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 191 ~~~~LSgGerqRv------~IA~aL~~~-p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
.+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++ ++..+||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCC
Confidence 4568999999988 567888999 999999999999999999999999998743 46899999996 3688999
Q ss_pred eEEEee
Q 010936 264 RLYLLS 269 (497)
Q Consensus 264 ~v~~L~ 269 (497)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-18 Score=171.31 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=100.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC--------CCCCCceeEEEECCEecCCC--------------------cCcEEEE-
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL--------ASNAFLSGTILLNGHKTKLS--------------------FGTAAYV- 133 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~--------~~~~~~~G~I~~~G~~~~~~--------------------~~~i~yv- 133 (497)
++++|+|+||||||||||.|+|.. .++ .|+|.++|.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 443 89999999874321 0124455
Q ss_pred --cCCCCCCCCCCHHHHHHHHhhccCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 134 --TQDDNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 134 --~Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
+|+..+++..+|.||..++......... +.......++.++..+++.+..+.. .++|+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 5666555566776665543110000000 0000000011122223443333332 2589999999998888
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
++.+|+++ ||| ..+.+.|+++. .+.+|++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 88999887 888 67888888874 5899999999864 3444443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-16 Score=144.63 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=89.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-C------C-c-CcEE----EEcCCCCCCCCCCHHHHH
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L------S-F-GTAA----YVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~------~-~-~~i~----yv~Q~~~l~~~lTV~e~l 149 (497)
++++|+|+||||||||+++|+|++++.....|.|.++|.++. . . + +.++ +++|+..+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998874334799999998621 1 1 1 2355 788876654 100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE-------EEeCC
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEP 221 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~ll-------lLDEP 221 (497)
. . .+....++++++. +. ..|+.+++ +|||||+||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111235556655 43 46898886 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 010936 222 TSG---LDSAAAFFVTQTLRCLSRDG 244 (497)
Q Consensus 222 Tsg---LD~~~~~~i~~~L~~l~~~g 244 (497)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455677888876666654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-15 Score=158.44 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=104.5
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----------CcCcEEEEcCCCCCC
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLI 140 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----------~~~~i~yv~Q~~~l~ 140 (497)
-+++||++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998875 7999998765321 124589999998888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-hCC-CEEEE
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRP-RLLFL 218 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-~~p-~lllL 218 (497)
+.+||++++.++...... .+ +++..|+.+... .+-.-.+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 889999999987532110 00 111222221111 11122357888888764 457 45555
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~ 253 (497)
..+|+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886554 33455544 48899999994
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-15 Score=148.94 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=99.0
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----------cCcEEEEcCCCCCCCCCCHHH
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... ...+.|++|...++|.++|+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999999875 89999999875211 123569999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
|+.++....... .+++..|+.+..+.. ..+|| .|++++..++.+++||.+|.
T Consensus 203 ~l~~~~~~~~d~------------vliDtaG~~~~~~~l-----~~eL~-------~i~ral~~de~llvLDa~t~---- 254 (328)
T 3e70_C 203 AIQHAKARGIDV------------VLIDTAGRSETNRNL-----MDEMK-------KIARVTKPNLVIFVGDALAG---- 254 (328)
T ss_dssp HHHHHHHHTCSE------------EEEEECCSCCTTTCH-----HHHHH-------HHHHHHCCSEEEEEEEGGGT----
T ss_pred HHHHHHhccchh------------hHHhhccchhHHHHH-----HHHHH-------HHHHHhcCCCCEEEEecHHH----
Confidence 998764321000 011222332222211 11233 48899988888888885553
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 010936 228 AAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~-~g~tvI~~tH~ 253 (497)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 ---~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 ---NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---THHHHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355666677764 58999999996
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-14 Score=132.50 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=77.9
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 76 s~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
++.+.+|+.++|+||||+|||||+++|++.+.+. +|. .+.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~-------------~~~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI-------------RGYF----------FDTKDLIFRL--- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC-------------CCCE----------EEHHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC-------------eEEE----------EEHHHHHHHH---
Confidence 3456789999999999999999999999987532 231 0112 2333322211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHH
Q 010936 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVT 234 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs-gLD~~~~~~i~ 234 (497)
......-. .. -....+.+|++|+||||++ ++|+..+..+.
T Consensus 83 ---------------~~~~~~~~----------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 83 ---------------KHLMDEGK----------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ---------------HHHHHHTC----------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ---------------HHHhcCch----------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 11111000 00 1123355999999999995 99999999999
Q ss_pred HHHHHHHhCCCEEEEEeCCCChH
Q 010936 235 QTLRCLSRDGRTVIASIHQPSSE 257 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~tH~~~~~ 257 (497)
+++....++|+++|++||.+..+
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHHcCCCEEEEcCCChhH
Confidence 99999887899999999997543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=141.94 Aligned_cols=76 Identities=22% Similarity=0.245 Sum_probs=69.0
Q ss_pred cCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE
Q 010936 192 LRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3459999999999999999 58999999999999999999999999999876688999999993 56788999999
Q ss_pred ee
Q 010936 268 LS 269 (497)
Q Consensus 268 L~ 269 (497)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-15 Score=154.15 Aligned_cols=159 Identities=16% Similarity=0.070 Sum_probs=95.6
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcC----------CCCCCC
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQ----------DDNLIG 141 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q----------~~~l~~ 141 (497)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......++++.+ .+.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999999742 1122221111122344443 333322
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEe
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLD 219 (497)
.. .+ . ..+..... .++++.++..+++. +. .+..||+|++|++.+|++|+..|.++++
T Consensus 218 ~a--~~-------~---~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl- 276 (416)
T 1udx_A 218 GA--SE-------G---KGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL- 276 (416)
T ss_dssp CG--GG-------S---CCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE-
T ss_pred ch--hh-------h---hhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE-
Confidence 10 00 0 01111100 01112222223332 22 3456999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCe
Q 010936 220 EPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
+++|...+ ..++.+++.. +.|.+++++|..-...+.++++.
T Consensus 277 ---NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 277 ---NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp ---ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred ---ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999877 5555555544 45777776654323445555544
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-15 Score=146.55 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=88.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhh---cc
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR---LR 156 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~---~~ 156 (497)
+++.+++|.|+||||||||.+.|++++.+ .| . ..+.+.+|+|++.+++. ++++|+.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46789999999999999999999998865 23 0 12345666999988876 89999988631 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCcccCCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQ--D--CADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~--~--~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
...+.+.........+.++.+.-. . .....+. .+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000111111123455666665332 0 0111122 24568999999999997 555 999999999999999853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-13 Score=123.63 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=72.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 456666 8999999999999999999999998754 34 11233433221100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66656
Q ss_pred HHHHHHHHHHHHhCCCE-EEEEeCCCCh
Q 010936 230 AFFVTQTLRCLSRDGRT-VIASIHQPSS 256 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~t-vI~~tH~~~~ 256 (497)
+..+.+++..+.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88899999998877888 8999997543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-16 Score=156.84 Aligned_cols=172 Identities=18% Similarity=0.142 Sum_probs=112.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++.+++++.| ..+.+|+++|+++++|++++|+||||||||||+++|+|++.|. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRA-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHH-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCC
T ss_pred HeeCCccccc-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccc
Confidence 4445555554 2357999999999999999999999999999999999998875 7999999986421
Q ss_pred ---CcCcEEEEcCCCCCCCCCC------------HHHHHHHHh-----------------------------hccCCCCC
Q 010936 126 ---SFGTAAYVTQDDNLIGTLT------------VRETISYSA-----------------------------RLRLPDKM 161 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lT------------V~e~l~~~~-----------------------------~~~~~~~~ 161 (497)
.+..++|++|++.+++..+ +.|.+.... .+..+ .
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~-~- 179 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP-G- 179 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS-C-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC-C-
Confidence 1345789999988775321 233321110 00000 0
Q ss_pred CHHHHH---HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHH
Q 010936 162 PWSEKR---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFF 232 (497)
Q Consensus 162 ~~~~~~---~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~p~lllLDEPTsgLD~~~~~~ 232 (497)
...+.. ..+.+....+.+ +..|.. ....+|+|++|++..|++++. +|++++ ||++|.....+
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 000000 001111111111 111210 123579999999999999987 688877 99999999999
Q ss_pred HHHHHHHHHh
Q 010936 233 VTQTLRCLSR 242 (497)
Q Consensus 233 i~~~L~~l~~ 242 (497)
+++.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-14 Score=142.71 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=81.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE---CCEecCCC-----cCcEEEEcCCCCCC-----CCCCH
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDNLI-----GTLTV 145 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~-----~~~i~yv~Q~~~l~-----~~lTV 145 (497)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.... .+.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88875 899999 88764321 13579999998653 78899
Q ss_pred HHHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 010936 146 RETI--SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 146 ~e~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
|++ .|.. .++........+...++.++++.++|.+ ..+. +++.|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhc
Confidence 888 4431 0111111112223356889999999986 5555 44579998899999987
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-15 Score=161.97 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=110.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe-cCC-CcCcEEEEcCCCCCCCCCCHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-~~~-~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+ ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999886 8999999865 221 123456666554322234444
Q ss_pred HHHHHHhhccCC----CCCCHHHHHH------------------HHHHHHHHcCCC-----c----cccccccCcccCCC
Q 010936 147 ETISYSARLRLP----DKMPWSEKRT------------------LVERTIIEMGLQ-----D----CADTVIGNWHLRGI 195 (497)
Q Consensus 147 e~l~~~~~~~~~----~~~~~~~~~~------------------~v~~~l~~lgL~-----~----~~~~~vg~~~~~~L 195 (497)
+.+..+.+.... ..+...+... .+.++++++... . ..+..+ .....+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~ 401 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWV 401 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEE
Confidence 444433221100 0111111100 122333333221 1 111111 122357
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EeCCCChHHHhcCC
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELFD 263 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~--~tH~~~~~i~~~~D 263 (497)
||||+||+++|. + | |+|||+.....+++.|.++..+|.|+++ +||+. .++...|+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHHT
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHcC
Confidence 999999987752 2 7 9999998887777777777666888875 88984 56666653
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=133.59 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=75.1
Q ss_pred EEEECCCCChHHHHHHHHHc-CCCCCCCceeEEEECCEecCC---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 85 TALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G-~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
+.|.||||+|||||+++|+| +..+. .|.+.++|.+... ....+++++|.+.+.-..+ + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 66665 7999999875321 1345778888764321100 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
.... .+.+.++.+......+..+ .+|| +..+|+++|+|||++ ||+.++..+.+.|.+.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1333333332111111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEeCCCCh
Q 010936 241 SRDGRTVIASIHQPSS 256 (497)
Q Consensus 241 ~~~g~tvI~~tH~~~~ 256 (497)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 36899999999753
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-16 Score=161.28 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=91.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---------cCcEEEEc------
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVT------ 134 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~------ 134 (497)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367777 4 3799999999999999999999999998875 89999988764311 12344544
Q ss_pred ---CCCCC--CCC----CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 135 ---QDDNL--IGT----LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 135 ---Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
|++.+ ++. .|+.+++.++..-+.. .......... +.+.|..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88765 343 5899998876421100 0000001112 22346678886542 234799999999
Q ss_pred HHHHHHhCCCEEEE
Q 010936 205 IALEILMRPRLLFL 218 (497)
Q Consensus 205 IA~aL~~~p~lllL 218 (497)
||++|+.+|++..-
T Consensus 302 LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEECTTTCEEEE
T ss_pred hhhhhcCCCCccCC
Confidence 99999999998763
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=130.64 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=91.0
Q ss_pred eeece-EEEEeCCeEEEEECCCCChHHHHHHHH--HcCCCCCC--CceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCH
Q 010936 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNA--FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 71 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L--~G~~~~~~--~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
-|+.+ .+-+++|++++|+||||||||||++.| .+..++.. ...+.|++++.. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 357999999999999999999999944 56655420 012355555432 11 11
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHH--hCCCEEEEeCCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEIL--MRPRLLFLDEPT 222 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~--~~p~lllLDEPT 222 (497)
......+..+ .+.. +.+++.+- +. +..++ .+.+.+.-+..++ .+|+++++||||
T Consensus 227 ~rl~~~a~~~----gl~~-------~~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 227 VRLVSIAQRF----GLDP-------DDALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHT----TCCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHc----CCCh-------HhHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1100111111 0111 01111111 11 11222 2233444444443 479999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEeCCCC------------------hHHHhcCCeEEEeeCC
Q 010936 223 SGLDSAAA------------FFVTQTLRCLSRD-GRTVIASIHQPS------------------SEVFELFDRLYLLSGG 271 (497)
Q Consensus 223 sgLD~~~~------------~~i~~~L~~l~~~-g~tvI~~tH~~~------------------~~i~~~~D~v~~L~~G 271 (497)
+.+|+... ..+++.|++++++ |.|||+++|... ..+...+|.++.|+.+
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 6788889998875 999999999821 2346778999999865
Q ss_pred e
Q 010936 272 K 272 (497)
Q Consensus 272 ~ 272 (497)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-15 Score=140.31 Aligned_cols=163 Identities=23% Similarity=0.198 Sum_probs=88.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5789999999999999999999999998752 2 124555555443322 222221100000001
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010936 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA-~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L 237 (497)
..... ....+.+..+...+..+..+.+ +...+|+||+||+++| ++++.++.++++|||.-
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 1122333332222222333333 2345799999999998 77788888877888731
Q ss_pred HHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 238 ~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
..+...--.+|++.+.....+.+++.|. +..|. +.+++...
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 1112222366777777433355666662 34454 45555443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-15 Score=154.18 Aligned_cols=167 Identities=16% Similarity=0.191 Sum_probs=118.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC------------CCCCCCceeEEEECCEecC------CCcCc---EEEEcCC
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSR------------LASNAFLSGTILLNGHKTK------LSFGT---AAYVTQD 136 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~------------~~~~~~~~G~I~~~G~~~~------~~~~~---i~yv~Q~ 136 (497)
.+++|..++|+|+||||||||+|+|+|. +.| .+|.|.++|.... ...+. ..++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 233 4899999984311 11112 3477888
Q ss_pred CCCCCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC-
Q 010936 137 DNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP- 213 (497)
Q Consensus 137 ~~l~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p- 213 (497)
+.+++.++..|++ .|...++. ++.++..++..+ +. .+..+||+. +|
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~ 141 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPI 141 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHH
T ss_pred cccccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccc
Confidence 8888887776655 33333221 111111111111 11 223356653 89
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCChHHHhcCCeEE-EeeCC-eEEEEeCchh
Q 010936 214 -RLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 281 (497)
Q Consensus 214 -~lllLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~tH~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 281 (497)
+++++|||+.++|+......++.++.+ .+.|.|++ +|.. .++.++||++. +|.+| ++++.|+.++
T Consensus 142 ~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 142 RDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999999999999999998 66677764 9994 68899999999 99999 8887776543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-13 Score=132.66 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=69.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE---CCEecCCC-----cCcEEEEcCCCC-----------
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDN----------- 138 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~-----~~~i~yv~Q~~~----------- 138 (497)
++.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++.... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999885 899999 88764321 135799999975
Q ss_pred -----CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 139 -----LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 139 -----l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
++|.+|+ ||+.|.. +. . ..+...++.++|+.+||. +.++. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5888999 9888753 21 1 112235688999999995 45554 3445664
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-12 Score=127.22 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=66.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE---CCEecCCC---cC-cEEEEcCCCCCCC----CCCH
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS---FG-TAAYVTQDDNLIG----TLTV 145 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~---~~-~i~yv~Q~~~l~~----~lTV 145 (497)
+++.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..... .+ ..+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999998875 899998 77654221 11 1689999987765 6899
Q ss_pred HHHHH--HHh------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 146 RETIS--YSA------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 146 ~e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
|++. |.. .++........+....+.++++.++|.+...... ..++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 321 1121111111222345888999999976433222 2477777763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-13 Score=139.01 Aligned_cols=166 Identities=20% Similarity=0.165 Sum_probs=104.3
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----CCcCcEEEEc
Q 010936 68 THNVLEGLTGYAEPG-------TLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK-----LSFGTAAYVT 134 (497)
Q Consensus 68 ~~~iL~~vs~~i~~G-------e~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~-----~~~~~i~yv~ 134 (497)
...+++++++.+++| +.++|+||||+|||||+++|+|.+... ...+|.+..++.+.. .....+.|++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999887 899999999999999999999987321 013676666554421 1235689999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
|.+.+.+ ++.|++..........- .......+.+...+..++|.. +.+. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9887765 78888855433211000 001111233444454455543 4443 346999999998665
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCC
Q 010936 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D 263 (497)
.+||+.+..++.++|++.++ .+. .|++ +.+..+++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~~-~~~~~ia~ 210 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMDV-----EIED-AAAEMIAK 210 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTTC-----CBCH-HHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcCC-----CcCH-HHHHHHHH
Confidence 78888899999999998865 342 4653 34444444
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-14 Score=140.92 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=94.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCC-CCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDD-NLIG 141 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~ 141 (497)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 356899999999999 999999999999999999998754 7899998754211 13466777764 4455
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
.+++.|++......+ . . .... .+....++ .+..|||||+||+.|++++.++|++| |||
T Consensus 105 ~i~~~Deid~~~~~r---~--~----~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR---S--D----RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc---C--C----Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 566666655432111 0 0 0000 11122222 33469999999999999999999985 888
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 010936 222 TS------------GLDSAAAFFVTQTL 237 (497)
Q Consensus 222 Ts------------gLD~~~~~~i~~~L 237 (497)
+. -.|...+.+|++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23666666666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-14 Score=136.60 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 205 IAL-EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 205 IA~-aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999998887653 2234521 56899888763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=107.08 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=45.4
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChH-------HHhcCCeEEEeeC
Q 010936 211 MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 270 (497)
Q Consensus 211 ~~p~lllLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~-------i~~~~D~v~~L~~ 270 (497)
.+|+++++|+|++.+ |+.....++..|.+++ +.|.|||+++|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 4699999999985421 4678999999964
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=117.36 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=79.4
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
+++..++|++++|+|+|||||||++..|++.+.+. .|+|.+.+.+.. + . ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHHH-------
Confidence 45566789999999999999999999999998763 567777654321 0 0 0011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
....+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1233445556642 124689999999 99999999999999999974 33445
Q ss_pred HHHHHHHHHH
Q 010936 232 FVTQTLRCLS 241 (497)
Q Consensus 232 ~i~~~L~~l~ 241 (497)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665553
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.7e-10 Score=116.29 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=111.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
...|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45788898889999999999999999999999998765331 22 123333322 122221
Q ss_pred HHH--Hhh-------ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEE
Q 010936 149 ISY--SAR-------LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLF 217 (497)
Q Consensus 149 l~~--~~~-------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~--~~p~lll 217 (497)
..- +.. ++. ..+...+ ..++.+.+..++..+..-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~-----d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYID-----DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE-----CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE-----CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 111 000 010 1122222 2345555555543332211 12368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHhC-CCEEEEEeC---------C--CC-------hHHHhcCCeEEEeeC
Q 010936 218 LDEPTSGLDS--------AAAFFVTQTLRCLSRD-GRTVIASIH---------Q--PS-------SEVFELFDRLYLLSG 270 (497)
Q Consensus 218 LDEPTsgLD~--------~~~~~i~~~L~~l~~~-g~tvI~~tH---------~--~~-------~~i~~~~D~v~~L~~ 270 (497)
+|+++...++ .....+.+.|+.++++ |.+||+++| + |. ..+...||.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999987742 3346778888888875 999999999 2 32 147788999999986
Q ss_pred CeE
Q 010936 271 GKT 273 (497)
Q Consensus 271 G~i 273 (497)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-10 Score=111.91 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=90.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 159 (497)
++|++++|+|+||+||||++..|++.+.+. +| +++.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987652 34 24667776652 2355665554321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010936 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (497)
Q Consensus 160 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~ 239 (497)
..|+.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 1122 23345555 45999999999 999998766555544433
Q ss_pred HH---hCCCEEEE-EeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 240 LS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 240 l~---~~g~tvI~-~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
+. ..+.++++ ++|.. .++.+.++++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 47874 578888888776777777764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-10 Score=122.30 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..+|+|+||++++ ++++|+|||||||||||++|+|+++|. +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4689999999999 999999999999999999999999886 89999999764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=108.61 Aligned_cols=118 Identities=20% Similarity=0.102 Sum_probs=82.6
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
++++++ +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.... + ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----~------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----A------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----H------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----h------------HH-HHH---
Confidence 678887 99999999999999999999999998763 67787766543110 0 00 000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHH
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAF 231 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP-TsgLD~~~~~ 231 (497)
..+.+..++...... ...+-.+.+|.+|+.+...+++++|+||| +.++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 012233455432110 01234456789999988899999999999 9999998888
Q ss_pred HHHHHHHHH
Q 010936 232 FVTQTLRCL 240 (497)
Q Consensus 232 ~i~~~L~~l 240 (497)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 887777665
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-11 Score=121.21 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=76.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEE-------------------eCCeEEEEECCCCChHHHHHHHHHcCCC--CCC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYA-------------------EPGTLTALMGPSGSGKSTLLDALSSRLA--SNA 110 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~ 110 (497)
|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|++. |.
T Consensus 38 i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~- 109 (308)
T 1sq5_A 38 LSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE- 109 (308)
T ss_dssp CCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-
T ss_pred cchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-
Confidence 6778888776 35889999988 9999999999999999999999999887 65
Q ss_pred CceeEEEE---CCEecCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 111 FLSGTILL---NGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 111 ~~~G~I~~---~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
+|+|.+ +|..... ..+.++++ |...+++.+|+.+++.+...++
T Consensus 110 --~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 110 --HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp --CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred --CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 899999 8865321 12346778 8777888899999998876553
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-11 Score=127.48 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=97.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCC--CHHHHH
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTL--TVRETI 149 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G--~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~l--TV~e~l 149 (497)
.+++.+.++.-++|.|++||||||+|++|.. +.... .|++.+.+.+.+.. . ++.-..+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 4678888999999999999999999999875 33332 46676666553311 0 0100111111 122222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc--ccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-EE
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD--TVIGNWHLRGISGGERRRV----------SIALEILMRPR-LL 216 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~vg~~~~~~LSgGerqRv----------~IA~aL~~~p~-ll 216 (497)
..+...- .....+.++| .+++...|+.+..+ ..+. ..+|+||+|+. .+|+++...|. ++
T Consensus 230 ~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 2211110 0012344444 36788888875432 1221 24788887752 35566677887 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCCC
Q 010936 217 FLDEPTSGLDSAAAFFVTQTLRCLSR----DGRTVIASIHQPS 255 (497)
Q Consensus 217 lLDEPTsgLD~~~~~~i~~~L~~l~~----~g~tvI~~tH~~~ 255 (497)
++||+++-+|.. ...+.+.|.++++ .|.++|++||+|.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 3455566655543 2789999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-11 Score=133.34 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=101.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCC---------
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD--------- 137 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~--------- 137 (497)
+...+++++++.+.+|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.......++|+|+..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 3466899999999999999999999999999999999998774 24888888876544445688888743
Q ss_pred -------------CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 138 -------------NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 138 -------------~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+..+++.+|+........+...-. +...... +.+|.-+.... ...++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~~-----~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDPF-----QSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEechh-----hcCCcccccccccc
Confidence 11122222222211000000000000 0000011 11221111111 11469999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~ 239 (497)
.++....++.+||+||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899988888888864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=111.20 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=90.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 71 iL~~vs--~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
-|+.+- +-+++|+++.|.||||+|||||+..++...... . ..+.|+.-+..+-+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g--------------~~vlyi~~E~~~~~---~--- 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G--------------GIAAFIDAEHALDP---E--- 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T--------------CCEEEEESSCCCCH---H---
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CeEEEEECCCCcCH---H---
Confidence 454443 368999999999999999999988777533211 1 23455554432111 0
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCC-
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGL- 225 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--p~lllLDEPTsgL- 225 (497)
++ +.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 --~a----------------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YA----------------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HH----------------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HH----------------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 11 1122210 000111 11233 2346678888755 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HhCCCEEEEEeCCCCh---------------HHHhcCCeEEEeeCCeEE
Q 010936 226 ---------DS---AAAFFVTQTLRCL----SRDGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 226 ---------D~---~~~~~i~~~L~~l----~~~g~tvI~~tH~~~~---------------~i~~~~D~v~~L~~G~iv 274 (497)
|+ ..+..+.+.+++| .+.|.|||+++|.... .+..+||.++.++.++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2223445555555 3359999999996421 256789999999877665
Q ss_pred EEeC
Q 010936 275 YFGE 278 (497)
Q Consensus 275 ~~G~ 278 (497)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 4443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-12 Score=129.04 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=82.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCC-CCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDN-LIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~-l~~~ 142 (497)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|... ..|.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 46889999999999 99999999999999999999864 5889998865311 1123567777643 5567
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCE
Q 010936 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~l 215 (497)
+++.|++......+... .....+....+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77888875432211000 000112222232222 24899999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-10 Score=107.55 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=44.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----CCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 76 s~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-----~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999863 2555554321 112357899987665555554443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.9e-10 Score=102.94 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
+.+.+|++|+.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-12 Score=125.56 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=81.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCC-CCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDD-NLIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~-~l~~~ 142 (497)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|.. ...|.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 46899999999999 99999999999999999999864 5889998865311 112356677764 34566
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCE
Q 010936 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~l 215 (497)
+++.|++......+.. ......+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7777777433221100 0001112222233332 24899999999999999999876
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.67 E-value=7.1e-10 Score=106.71 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=41.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..|+++|++..+. . ++++.+ ++++|+|||||||||||++|+|++.|. +|+|.++|.+.
T Consensus 8 ~~l~l~~~~~~~~------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~ 65 (227)
T 1qhl_A 8 RSLTLINWNGFFA------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEETTEEE------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------
T ss_pred eEEEEEeeecccC------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEc
Confidence 4577888765441 1 456666 899999999999999999999999886 89999999764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-09 Score=108.50 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCeE-EEEECCCCChHHHHHHHHHcCCCCC--------CCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH---HH
Q 010936 81 PGTL-TALMGPSGSGKSTLLDALSSRLASN--------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR---ET 148 (497)
Q Consensus 81 ~Ge~-~aIlG~nGaGKSTLL~~L~G~~~~~--------~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~---e~ 148 (497)
.|-. ++|+|++|||||||+|.|+|..... ...+|.|.++|.+... ....|++.+.+. ..|. ..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHH
Confidence 3444 9999999999999999999976421 1257999999865321 122344443221 1121 11
Q ss_pred HHHHhh----cc-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH----HHH-HhCCCE
Q 010936 149 ISYSAR----LR-LPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRL 215 (497)
Q Consensus 149 l~~~~~----~~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA----~aL-~~~p~l 215 (497)
+..... +. .+..... .+....+.++++.+++.+..--.|++ +...+|+|+++|+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 111100 00 0001111 22233456778888775543222333 3345788888988887 444 334444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 010936 216 LFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (497)
Q Consensus 216 llLDEPTsgLD~~~~~~i~~~L~~l~~ 242 (497)
+|+|++|......+.+.|.++..
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-09 Score=98.81 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=23.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRLAS 108 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~-G~~~~ 108 (497)
.+..+++||++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98743
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-08 Score=104.33 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.5
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.-|+.+- +-+++|+++.|.||||||||||+..+++...+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455543 36899999999999999999999999976543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-08 Score=92.28 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~ 241 (497)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887643
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-07 Score=101.21 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCC
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP 254 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvI~~tH~~ 254 (497)
|++++|..++++....|.+||+||+ ++|.|......+.++|..+. ..+..||.+||+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 44777777777777777663 2477899999996
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-09 Score=98.38 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=32.0
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..+..+..++|++++|+||||||||||+++|++.+ |.+.++|.+.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 33334666799999999999999999999999864 7788888653
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-07 Score=104.03 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=58.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCCChHHHhcCCeE
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRL 265 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~-tH~~~~~i~~~~D~v 265 (497)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++|++| ||++ ..+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCC
Confidence 34579999999999999999999999999996 999888777777776655456778875 8875 5677777743
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-07 Score=95.36 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=85.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 4457777777999999999999999999999888743211 11 23445432 2343332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
. .++......+.+.+..+ ..||.++++|+..|...+.++++++.|+|...+
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 2 22222222222222111 259999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHh-C-CCEEEEEeC
Q 010936 229 AAFFVTQTLRCLSR-D-GRTVIASIH 252 (497)
Q Consensus 229 ~~~~i~~~L~~l~~-~-g~tvI~~tH 252 (497)
.+|...++++.+ . |..+|++-|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366677777765 4 677777754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-08 Score=97.08 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=36.5
Q ss_pred EEEEEeE-EEEEEccCCcccceeeceEEEEeC---CeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 51 RLTWKDL-TVMVTLSNGETHNVLEGLTGYAEP---GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 51 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.++++|+ ++.|. +.+.+|+|+|+++++ |++++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 99882 246799999999999 99999999999999999999998653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.1e-07 Score=92.31 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQPS 255 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~t--H~~~ 255 (497)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+..+.. +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55556777889999 99999999998888888776543 67888888 7753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-07 Score=83.08 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=34.7
Q ss_pred cee--eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC
Q 010936 70 NVL--EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (497)
Q Consensus 70 ~iL--~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~ 109 (497)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 356 7899999999 99999999999999999999987653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-08 Score=91.95 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=42.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE--EECCEec
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI--LLNGHKT 123 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I--~~~G~~~ 123 (497)
.....+.+++..++|++++|+||||||||||+++|++.+.. .|.+ +++|.+.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 34566777888899999999999999999999999998752 5776 7887653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-07 Score=94.77 Aligned_cols=77 Identities=18% Similarity=0.099 Sum_probs=56.1
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C-----cCcEEEE-cCC
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S-----FGTAAYV-TQD 136 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~-----~~~i~yv-~Q~ 136 (497)
+++++|.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 47899999999999999999999999999999988764 6889887765321 0 3457888 665
Q ss_pred CCCCCCCCHHHHHHH
Q 010936 137 DNLIGTLTVRETISY 151 (497)
Q Consensus 137 ~~l~~~lTV~e~l~~ 151 (497)
....|..++.+++..
T Consensus 172 ~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 172 LNADPASVVFDAIKK 186 (320)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 444444344444433
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-06 Score=85.99 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 252 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH 252 (497)
.++.++++..+++..+.+|+++++.-..+..|..+ ...+++++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445433 45566666665555 57776665
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-09 Score=110.95 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=83.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCC-CCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDN-LIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~ 142 (497)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... .+.+.+++|... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45788999999999 89999999999999999999764 57888888653211 123445666643 3455
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
+.+.|++......+.. ......+..+.+..++. .||||++|+..|+++..++|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 5555555322111100 00012222333444432 3788888888899999999987 8888
Q ss_pred CC
Q 010936 222 TS 223 (497)
Q Consensus 222 Ts 223 (497)
.-
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 65
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=9.7e-07 Score=82.41 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH-HHhcCCeEEEee
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-VFELFDRLYLLS 269 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~-i~~~~D~v~~L~ 269 (497)
+.|+.+|..++.....+|..+.++ ++.++|.....+.+.+... .+.++|+.+|..... ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678889999998888887654332 3345666555555544322 356888888875321 256788888774
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=81.90 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=27.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+++.+|++++|+||||||||||+++|++.+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999999855
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.6e-07 Score=83.00 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=24.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+...+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999765
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.7e-06 Score=83.62 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCC
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 254 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvI~~tH~~ 254 (497)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 578999999986
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-06 Score=79.52 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
+|++++|+||||||||||+++|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987532 3565544
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-06 Score=90.65 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.0
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE-eeCCeEEEEeCch
Q 010936 211 MRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS 280 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~-L~~G~iv~~G~~~ 280 (497)
.+|++||+||+..-.+. .++..+...+..+...|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 6788899999888778899999999865433223333332 4456666666554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.2e-06 Score=84.05 Aligned_cols=133 Identities=11% Similarity=0.131 Sum_probs=85.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
...|+++.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.-+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 4567888777999999999999999999998887742211 11 234455432 344332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
.. ++......+.+.+..+ | . ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 21 1111111112111111 0 0 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEeCC
Q 010936 229 AAFFVTQTLRCLSRD-GRT--VIASIHQ 253 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~-g~t--vI~~tH~ 253 (497)
..++...++++.++ |.. +|++-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566677777654 666 8877664
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.2e-05 Score=75.25 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEeCCC---ChHH
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQP---SSEV 258 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvI~~tH~~---~~~i 258 (497)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|++| ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998776532 22234444433321 235677788864 2344
Q ss_pred HhcCCeEEEe
Q 010936 259 FELFDRLYLL 268 (497)
Q Consensus 259 ~~~~D~v~~L 268 (497)
.+.|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567665544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-06 Score=82.88 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=33.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+..++|++++|.|+||||||||+++|+|. .|+|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 34578999999999999999999999987 3778887765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.9e-05 Score=77.20 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=78.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+-+++|+++.|.||+|+|||||+..++... .+. ...| ....+.|+.-+..+ ....-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg-----------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGY-----------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTB-----------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCC-----------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 468999999999999999999999888642 121 0001 01235566554322 222222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH-HHHHHHHHHHH----hCCCEEEEeCCCCCCCHH--
Q 010936 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEIL----MRPRLLFLDEPTSGLDSA-- 228 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~----~~p~lllLDEPTsgLD~~-- 228 (497)
+... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-....
T Consensus 181 ----g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp ----TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred ----CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1111 1223222110 1123333 34555666666 568999999999866432
Q ss_pred ----------HHHHHHHHHHHHHhC-CCEEEEEeCCC
Q 010936 229 ----------AAFFVTQTLRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 229 ----------~~~~i~~~L~~l~~~-g~tvI~~tH~~ 254 (497)
...+++..|+.++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134556666777664 88999988863
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-05 Score=76.39 Aligned_cols=143 Identities=24% Similarity=0.291 Sum_probs=80.3
Q ss_pred eeceE-EEEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 72 L~~vs-~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ....-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHH
Confidence 44432 568999999999999999999998887542 221 001 10 1235566544322 122222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH-HHHHHHHHHHHH---hCCCEEEEeCCCCCC
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG-ERRRVSIALEIL---MRPRLLFLDEPTSGL 225 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~IA~aL~---~~p~lllLDEPTsgL 225 (497)
.....+ +... +++++.+- + .+..++. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~----g~~~-------~~~~~~l~--------~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKAL----GLDI-------DNVMNNIY--------Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHT----TCCH-------HHHHHTEE--------E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHh----CCCH-------HHHhccEE--------E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 222211 1111 11222111 1 1123333 335677778887 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHhC-CCEEEEEeCC
Q 010936 226 DS--------AA----AFFVTQTLRCLSRD-GRTVIASIHQ 253 (497)
Q Consensus 226 D~--------~~----~~~i~~~L~~l~~~-g~tvI~~tH~ 253 (497)
+. .. ..+++..|++++++ |.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 32 11 24555666666654 8999998775
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.4e-07 Score=85.86 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=43.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHH---cCCCCCCCceeEEE--------ECCEecCC------CcCcEEEE
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTIL--------LNGHKTKL------SFGTAAYV 133 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~---G~~~~~~~~~G~I~--------~~G~~~~~------~~~~i~yv 133 (497)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.+... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887664 89988 77765421 12346777
Q ss_pred cCC
Q 010936 134 TQD 136 (497)
Q Consensus 134 ~Q~ 136 (497)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-06 Score=78.30 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.92 E-value=9.2e-06 Score=81.03 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEeCCCChHHHhcCCeE
Q 010936 195 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFFVTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 195 LSgGerqRv~IA~aL~--~~p~lllLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvI~~tH~~~~~i~~~~D~v 265 (497)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.+++|+. ..+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 898886 5566666 68999998 7899876 66778888888764 53 566677763 4455666554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.84 E-value=2.5e-06 Score=79.66 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=33.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987653 5777665543
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.2e-06 Score=88.34 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=39.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 566654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-06 Score=92.35 Aligned_cols=129 Identities=19% Similarity=0.124 Sum_probs=71.4
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHH
Q 010936 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETIS 150 (497)
Q Consensus 76 s~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~ 150 (497)
|+.+++|..++|+|++|+|||||++.|++...+. ...|+| .+|...... .+.+++.+|...++.. ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~---- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR---- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE----
Confidence 4567889999999999999999999999765431 135766 455432110 1223333333222111 000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
+ ...||. |. ..++ .......-..+..++++| |+.|+++.+.
T Consensus 76 --------------------------~---nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 76 --------------------------V---FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp --------------------------E---EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred --------------------------E---EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 0 111221 10 0111 112222235678899999 9999998876
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
. .++.+.+.+.++|++.|..
T Consensus 117 ~----~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 117 R----AWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp H----HHHHHHHTTCCEEEEEECG
T ss_pred H----HHHHHHHccCCEEEEecCC
Confidence 3 3333344588889999884
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=75.16 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6.5e-06 Score=74.60 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
.+|++++|+|+|||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999763 55666654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.76 E-value=4.9e-05 Score=79.56 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=69.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
++.+++++|++||||||++..|++.+... .++|.+-+ -+. +. ....+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~--------------~D~--~r-~~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA--------------ADV--YR-PAAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE--------------ECC--SC-HHHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe--------------cCc--cc-hhHHHHHH----------
Confidence 58899999999999999999999877552 34444322 221 00 01122222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT-SG--LDSAAAFFVTQTL 237 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT-sg--LD~~~~~~i~~~L 237 (497)
.+-+..|++-.... .+..--.--+-+++.+...+++++|+|+|. .+ .|+....++.+++
T Consensus 146 -----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp -----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 12222343211100 011111122234555555689999999997 34 7887777777766
Q ss_pred HHHHhCCCEEEEEeCC
Q 010936 238 RCLSRDGRTVIASIHQ 253 (497)
Q Consensus 238 ~~l~~~g~tvI~~tH~ 253 (497)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5554344455555554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.76 E-value=7.1e-06 Score=76.99 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-06 Score=86.34 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.4
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCChHHHHHHHHHcCCCC
Q 010936 68 THNVLEGLTGYAEPGT------LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge------~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+..|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567888888887776 9999999999999999999998763
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.3e-06 Score=89.02 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TIL-LNGHK 122 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G-~I~-~~G~~ 122 (497)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57799999999999999999999999998774 55 674 77754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.4e-05 Score=72.05 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.6e-05 Score=69.62 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.5
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
++.++.+.+| +++|+|||||||||+|++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556666665 99999999999999999987
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=8.1e-05 Score=73.89 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=26.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999765
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.3e-05 Score=81.05 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999997653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00029 Score=73.92 Aligned_cols=171 Identities=13% Similarity=0.157 Sum_probs=95.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.-+ ++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHH
Confidence 44577777779999999999999999999998887543210 11 123343322 233222
Q ss_pred HHH--HhhccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEEE
Q 010936 149 ISY--SARLRLP------DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFL 218 (497)
Q Consensus 149 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~--~~p~lllL 218 (497)
..- +.....+ ..++..+ ..++.+.+..+.-.+. .+- ...++|..+- .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l---~i~--d~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPI---YID--DTPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCE---EEE--CCTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCE---EEE--CCCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 0000000 0122222 2233333333321111 111 1124676664 34556565 58999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEeCCCC------------------hHHHhcCCeEEEee
Q 010936 219 DEPTSGLDS----------AAAFFVTQTLRCLSRD-GRTVIASIHQPS------------------SEVFELFDRLYLLS 269 (497)
Q Consensus 219 DEPTsgLD~----------~~~~~i~~~L~~l~~~-g~tvI~~tH~~~------------------~~i~~~~D~v~~L~ 269 (497)
|..+.-.+. .....+...|+.++++ |.+||+++|-.. ..+.+.+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764432 1224677778888875 899999988311 02466788888885
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.56 E-value=2.9e-05 Score=81.20 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=29.0
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~ 109 (497)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 456789999999999999999999999988663
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.1e-05 Score=75.07 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=76.3
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
+..|+.++|.||+||||||++.++....... .| ....+..+.+.+......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~---~~-----------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQ---ND-----------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHH---TT-----------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhh---cC-----------CCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 3579999999999999999888765321000 01 012234555554433333444544322111000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccc--CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 010936 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIG--NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQ 235 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs-gLD~~~~~~i~~ 235 (497)
. ..|.....+.... +..+-=.+.|.-.+.. ...+.+-+++++||.-. ++|.......++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 0010000000000 0000012456655543 33578999999999976 688776655555
Q ss_pred HHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 236 TLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 236 ~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
.+.....+-.++++|.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 5544433334666665444444555554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00094 Score=63.50 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCC
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQ 253 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~--~g~tvI~~tH~ 253 (497)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555555444332 13588888884
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.46 E-value=8e-06 Score=82.91 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=41.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 56888999999999999999999999999999999887553 455554443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.1e-05 Score=70.42 Aligned_cols=38 Identities=37% Similarity=0.463 Sum_probs=29.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G--~I~~~G~ 121 (497)
.+|++++|+|++||||||++++|++.+.+ .| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999987643 24 5555553
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00016 Score=66.82 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00026 Score=70.61 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=35.4
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 210 ~~~p~lllLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
..++.+||+||+.. ..+..+...+...+..+...|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 23447788889999888777777888887643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.36 E-value=6e-05 Score=72.10 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=27.3
Q ss_pred eeceEEEEe---CCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 72 LEGLTGYAE---PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 72 L~~vs~~i~---~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
|.++|+++. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 677777776 8999999999999999999999987653
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.34 E-value=1.7e-05 Score=81.45 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=44.6
Q ss_pred EEEEEeEEEEEEccCCcccceee--------------ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLE--------------GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+|++..|+ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 366777877774 3466888 899999999999999999999999999998765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=4.6e-05 Score=77.58 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=32.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 457899999999999999999999987653 5666665543
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=68.60 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=25.7
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.+.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 4556666665 999999999999999999863
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00033 Score=63.06 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.25 E-value=3.9e-05 Score=82.75 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=40.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34677888887 89999999999999999999999988653 67776655
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0028 Score=64.56 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=28.3
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
..|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455543 3588999999999999999999987764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00028 Score=73.84 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=31.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLAS------N---AFLSGTILLNGHK 122 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~------~---~~~~G~I~~~G~~ 122 (497)
.++|+|+||+|||||+|.|+|.... + ....|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997530 0 1246899999975
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00034 Score=71.64 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.5
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 47778888775 99999999999999999986
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00017 Score=67.80 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=27.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865321113566554
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=66.10 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.1
Q ss_pred eeeceE-EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 71 iL~~vs-~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 5689999999999999999999988774
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00058 Score=65.13 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCChHHHhcCCeEEEee
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------~~~~~i~~~~D~v~~L~ 269 (497)
+|+++++||--. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 664 355666777777999999999 56678889999999986
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=8.6e-05 Score=69.54 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=33.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G--~I~~~G~ 121 (497)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5689999999999999999999999887642 56 6777653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00031 Score=64.29 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=20.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 6689999999999999999973
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00079 Score=65.51 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.-+.|.||+|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998764
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=69.29 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=29.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
..-|+.+.+-+.+|+++.|.|++|+|||||+--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666666689999999999999999999877664
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00022 Score=66.30 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998765
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00023 Score=65.16 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999864
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00057 Score=64.04 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.6
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEeCCC
Q 010936 211 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQP 254 (497)
Q Consensus 211 ~~p~lllLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vI~~tH~~ 254 (497)
.+|.++++||.-.-- +......+.+.+..+...+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965422 233377788888887665654 78877754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00025 Score=64.99 Aligned_cols=39 Identities=36% Similarity=0.447 Sum_probs=29.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 588999999999999999999875432223466666543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0039 Score=63.22 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999998654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00015 Score=67.05 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=31.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-..+++++|+..+++. ++|+|++|+|||||++.+.+-
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468899999888875 689999999999999999863
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00034 Score=64.69 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0002 Score=74.79 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=38.2
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+++++. +|++++++|+|||||||++..|++.+.+. .|.|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 577777 89999999999999999999999998764 5778776654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=8.4e-05 Score=76.00 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=34.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+.+.|++..+ ..+.+++++++.| +|+|+||+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 46677776655 3467889999976 99999999999999999886443
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00027 Score=64.54 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=26.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
..+|.++.|+|++||||||+.+.|+..+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999987654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.013 Score=58.54 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0005 Score=71.03 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=32.4
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC-----------CCCCCCceeEEEECCE
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSR-----------LASNAFLSGTILLNGH 121 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~-----------~~~~~~~~G~I~~~G~ 121 (497)
.+..|..++|+|+||+|||||++.|+|. +.| ..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 4567888999999999999999999997 333 3688887764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00031 Score=67.80 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=34.0
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 34433 5667889999999999999999999987642 456667643
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00072 Score=60.14 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00095 Score=60.18 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0059 Score=58.19 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+..-+.|.||+|+|||||.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899999999999999998653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00079 Score=61.07 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999843
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.017 Score=61.31 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.-|+.+..-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666655689999999999999999999876653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00017 Score=73.42 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=33.9
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCC
Q 010936 70 NVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~--~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+|+.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888888999998 99999999999999999998653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00064 Score=62.86 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=67.02 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00016 Score=72.06 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=35.5
Q ss_pred ec-eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 73 EG-LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 73 ~~-vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
++ ++++.+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999987653 456655443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00019 Score=72.31 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=36.2
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCCC
Q 010936 68 THNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~--~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35688888889999999 999999999999999999987644
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=59.08 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=59.27 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=59.93 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=62.54 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999998743
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00091 Score=64.24 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.++++++....| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 344555555555 88999999999999999998653
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=58.89 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0087 Score=59.96 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH--H--hCCCEEEEeCCCCCCC-----H----------HHHHHHHHHHHH---HHh-CCCEEEEEeCC
Q 010936 198 GERRRVSIALEI--L--MRPRLLFLDEPTSGLD-----S----------AAAFFVTQTLRC---LSR-DGRTVIASIHQ 253 (497)
Q Consensus 198 GerqRv~IA~aL--~--~~p~lllLDEPTsgLD-----~----------~~~~~i~~~L~~---l~~-~g~tvI~~tH~ 253 (497)
+|.+.+.++.+| + .+|++++.|--++=.- . ..++.+-+.|++ +++ .|.++|++-|-
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 455556676666 3 4799999998776531 1 123344455554 344 68999999887
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.019 Score=58.68 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=27.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 71 iL~~vs--~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344433 3589999999999999999999877653
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=59.10 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=61.91 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=57.12 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDAL 102 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L 102 (497)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=60.84 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=46.2
Q ss_pred HHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCC---------------------ChHHHhcCCeE
Q 010936 208 EILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------------------SSEVFELFDRL 265 (497)
Q Consensus 208 aL~~~p~lllLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~---------------------~~~i~~~~D~v 265 (497)
++...|+++++||+-.- .+.......++.+..+...|..++.++|-- .+.+++.||.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 34468999999998642 333222333444444556788999999821 12455677777
Q ss_pred EEeeCCeEEEEeCchhHHHHHHh
Q 010936 266 YLLSGGKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~~~f~~ 288 (497)
.+++ -+|+++.+.++.
T Consensus 160 ~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEBC-------CCHHHHHHHHHT
T ss_pred EEec-------CCHHHHHHHHHC
Confidence 7764 467777776654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0024 Score=59.69 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=61.85 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=58.21 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=59.04 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999999999999987543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=58.17 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0028 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0026 Score=57.50 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999843
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0032 Score=56.32 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q 010936 83 TLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G 104 (497)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.051 Score=65.41 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-+.+|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999988754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0033 Score=58.09 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0016 Score=60.26 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999877643
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999854
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0026 Score=57.88 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999987654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0029 Score=61.43 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0034 Score=56.45 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0032 Score=62.05 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=27.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999986542 24456654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=57.19 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0037 Score=57.75 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=24.0
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|.+++|.|++||||||+.+.|+-.+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0043 Score=56.14 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999743
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.037 Score=52.84 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC---------CChHHHhcCCeEEEee
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 269 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~---------~~~~i~~~~D~v~~L~ 269 (497)
.+.+++++||----.| +.+.++.+++.|+.||++-++ ++.++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 666666666689999999999 8889999999999885
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0094 Score=55.22 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCChHHHhcCCeEEEee
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------~~~~~i~~~~D~v~~L~ 269 (497)
+.+++++||--- +|+. +++.++.++..|..||++.+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6643 35677777777999999999 55678899999998875
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=56.37 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.032 Score=56.45 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999998653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0068 Score=61.85 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=28.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC-----C---CCCceeEEEECC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA-----S---NAFLSGTILLNG 120 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~-----~---~~~~~G~I~~~G 120 (497)
|-.++|+|.+|+|||||++.|+|-.. | ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 012357777765
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.078 Score=54.09 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46689999999999999999998653
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0045 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|++|+|||||++.|++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0041 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.+.+++|.|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999854
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0052 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=54.01 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0082 Score=59.99 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=31.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
...+++..+.+ .|.-++|.|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888887 7899999999999999999999864
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0055 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.006 Score=57.05 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.011 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999766654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0044 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.028 Score=52.95 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCChHHHhcCCeEEEee
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------~~~~~i~~~~D~v~~L~ 269 (497)
+.+++++||--- +|+. +++.++.++..|..||++-+ .++.++..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 479999999866 6643 33777777777999999999 77788999999999886
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0054 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0056 Score=56.18 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0045 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0061 Score=53.55 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0056 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0057 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0052 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0061 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999865
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0091 Score=58.35 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0058 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0062 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0065 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0062 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0064 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0064 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0058 Score=53.56 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.008 Score=55.28 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0065 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0072 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999743
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0056 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.08 Score=63.78 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=85.2
Q ss_pred cceeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH
Q 010936 69 HNVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 69 ~~iL~~vs--~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
..-|+.+- +=+++|+++.|.||+|+|||||.--++..... . | ..+.|+.-+...-+ +
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~------G-------~~vlyis~E~s~~~---~- 426 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----E------G-------KTCAFIDAEHALDP---I- 426 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----T------T-------CCEEEECTTSCCCH---H-
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----h------C-------CCeEEEEccCchHH---H-
Confidence 34466654 35899999999999999999998776532111 0 1 23556655432211 1
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSG 224 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~--~~p~lllLDEPTsg 224 (497)
.+. .+|++.. +-.+- .+ -++.| -+.+++.++ .+|+++++|..++=
T Consensus 427 ----~a~----------------------~lGvd~~-~L~i~--~~--~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 427 ----YAR----------------------KLGVDID-NLLCS--QP--DTGEQ--ALEICDALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp ----HHH----------------------HTTCCGG-GCEEE--CC--SSHHH--HHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred ----HHH----------------------HcCCCHH-HeEEc--CC--CCHHH--HHHHHHHHHHhcCCCEEEECCHHHh
Confidence 011 1222100 00010 01 13333 234555554 57999999999876
Q ss_pred CCH-------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCC---------------ChHHHhcCCeEEEeeCCe
Q 010936 225 LDS-------------AAAFFVTQTLRCL---SR-DGRTVIASIHQP---------------SSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 225 LD~-------------~~~~~i~~~L~~l---~~-~g~tvI~~tH~~---------------~~~i~~~~D~v~~L~~G~ 272 (497)
... .....+.+.+++| ++ .|.+||++.|-. ...+..++|-++.+....
T Consensus 474 ~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 474 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 641 1223445555554 34 499999998842 124667889888876544
Q ss_pred E
Q 010936 273 T 273 (497)
Q Consensus 273 i 273 (497)
.
T Consensus 554 ~ 554 (1706)
T 3cmw_A 554 A 554 (1706)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0076 Score=54.50 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0091 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0062 Score=55.05 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0065 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999876
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0067 Score=54.53 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998764
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0047 Score=63.33 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 212 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.|.++++||--.=++ +.....+.+.+++.++.|..++++||.|.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578899999877774 66777778888888777888999999874
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0072 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0088 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999844
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0074 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0075 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0076 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.009 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999854
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0085 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0071 Score=54.23 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0087 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.009 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0099 Score=57.42 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0081 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0073 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999854
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0096 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.008 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.008 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0076 Score=54.45 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998543
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0086 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0092 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=56.59 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999743
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0056 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999863
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0092 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0084 Score=52.96 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=58.89 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0095 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0095 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0098 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0084 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0096 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.19 Score=52.49 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998644
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.01 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999843
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=60.70 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=52.89 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.--++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0089 Score=54.71 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=57.24 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 368999999999999999999987644
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.011 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=52.31 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0077 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=56.65 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.016 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998654
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.15 Score=62.37 Aligned_cols=149 Identities=16% Similarity=0.156 Sum_probs=84.7
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.-|+.+- +=+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ ++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---HH-
Confidence 3455554 25899999999999999999998777643211 11 12445544322211 10
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~--~~p~lllLDEPTsgL 225 (497)
+. .+|++. .+-.+-+ ..+.. +-+.+++.++ .+|++++.|.-++-.
T Consensus 428 ----a~----------------------~lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----AR----------------------KLGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----HH----------------------HTTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----HH----------------------HcCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 11 112210 0001111 12332 3456666665 479999999987655
Q ss_pred C-H------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCCh---------------HHHhcCCeEEEeeCCe
Q 010936 226 D-S------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSS---------------EVFELFDRLYLLSGGK 272 (497)
Q Consensus 226 D-~------------~~~~~i~~~L~~l---~~-~g~tvI~~tH~~~~---------------~i~~~~D~v~~L~~G~ 272 (497)
. + .....+.+.|+.| ++ .|.+||++.|-... .+...+|-++.|+...
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 2 1 1233455666665 45 48999999884211 3567788888887554
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=54.82 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999743
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=53.49 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=57.20 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.024 Score=52.99 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
...++..-..+ .|..++|+||+|+|||||...|+..
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44566665554 6789999999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.013 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.014 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998543
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=53.70 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.013 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.013 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=57.13 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.3
Q ss_pred CeEEEEECCCCChHHHHHHHHH
Q 010936 82 GTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=54.09 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998653
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.014 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999853
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=54.46 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998543
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0081 Score=59.29 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++-+++|.|++||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.011 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=53.49 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.017 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999998753
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.02 Score=53.80 Aligned_cols=27 Identities=48% Similarity=0.708 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.++.|.|++||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999986654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.014 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999854
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.013 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999987643
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=56.06 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q 010936 83 TLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G 104 (497)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988644
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.019 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.021 Score=53.86 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.016 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.016 Score=55.21 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=21.5
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998655
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.016 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.018 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57899999999999999988653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.019 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.026 Score=56.90 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.013 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.017 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.02 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=50.86 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35577899999999999999998654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.018 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.02 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.023 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.22 E-value=0.019 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999753
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.023 Score=58.96 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.3
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-....++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999999753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.019 Score=53.35 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998654
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.027 Score=59.32 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=29.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 355555 566789999999999999999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.021 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.025 Score=57.15 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.025 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.027 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.022 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.034 Score=52.24 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=40.2
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCh---------HHHhcCCeEEEee
Q 010936 210 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSS---------EVFELFDRLYLLS 269 (497)
Q Consensus 210 ~~~p~lllLDEPTs----gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~---------~i~~~~D~v~~L~ 269 (497)
-.+|+++++|--+. .-|......+...|+.++++ |.++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999986432 11445556777788888765 9999999986321 1345688888774
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.029 Score=51.63 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++++++
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~ 166 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDP 166 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCCh
Confidence 3578999999765 7877777766666432 2356788888774
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.03 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998765
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.029 Score=52.78 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.++.+-|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.029 Score=52.99 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999977653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.012 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.032 Score=55.73 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998654
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.046 Score=49.88 Aligned_cols=35 Identities=20% Similarity=0.031 Sum_probs=27.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
+..++..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555444 4588999999999999999988864
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.034 Score=52.74 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|.++.|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.089 Score=55.58 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=53.9
Q ss_pred cCCCCHHHHHHHHHHHH--HHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 192 LRGISGGERRRVSIALE--ILM---------------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~a--L~~---------------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
..++||||+|-.-+|.+ ++. .=.+++|||. +-+|.......+++++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 45799999997544433 332 1257999999 999999999999999876 7777777755
Q ss_pred ChHHHhcCCeEEEee
Q 010936 255 SSEVFELFDRLYLLS 269 (497)
Q Consensus 255 ~~~i~~~~D~v~~L~ 269 (497)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3566788888774
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.028 Score=52.33 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.85 E-value=0.013 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=4.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999765
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.026 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998643
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.027 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-.++|+|.+|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.82 E-value=0.021 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.018 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.026 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.035 Score=55.69 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.029 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999854
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.033 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.031 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.053 Score=54.06 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.049 Score=49.77 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC---------hHHHhcCCeEEEee
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~---------~~i~~~~D~v~~L~ 269 (497)
+++++++||--- +|+ .+++.|+.+++.|..||++.++.. ..+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 543 366677777777999999888422 34566788886664
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.049 Score=47.39 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
+..+|++||. ..|++..+..+.+.|... ..+..+|++|..+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 4468999998 468888888888887322 22456777777653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.043 Score=54.47 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
++.++++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776533 345666776653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.05 Score=49.44 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
++.++++||. ..+++.....+.+.+... ..+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 457777766676666553 2345677777654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.055 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.053 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..+++|+||+|||||||...|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.047 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|.+++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.055 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999988654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.066 Score=53.68 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999874
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.054 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+||+|++||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997543
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.026 Score=54.17 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.....| +.|.||+|+|||||+++|+...
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 333444 7799999999999999998753
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.021 Score=52.12 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.049 Score=56.61 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.064 Score=54.18 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.037 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.081 Score=52.29 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=20.9
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.068 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999864
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.1 Score=48.49 Aligned_cols=72 Identities=21% Similarity=0.092 Sum_probs=53.1
Q ss_pred HHHHHHHHHHH--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 200 RRRVSIALEIL--MRPRLLFLDEPTSG--LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 200 rqRv~IA~aL~--~~p~lllLDEPTsg--LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+..+.-|+..+ .+.++++|||.+.. ++-....++++.|.+ +-.+..||+|...+..++.+++|-|--|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34555566667 56799999999763 333344567777754 22478999999999999999999999997544
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=92.34 E-value=0.041 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHH-HHcC
Q 010936 84 LTALMGPSGSGKSTLLDA-LSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~-L~G~ 105 (497)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 5554
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.064 Score=52.67 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.073 Score=53.33 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999997654
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.059 Score=58.40 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=26.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|..++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566542 233578999999999999999999964
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.083 Score=52.35 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.058 Score=56.73 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.|=-++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999975
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.065 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.015 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=91.96 E-value=0.085 Score=52.33 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+..-+.|.||+|+|||+|.++++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556899999999999999999865
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.076 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999998765
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.069 Score=57.42 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 497 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-35 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-35 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-34 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-32 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-32 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-31 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-31 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-29 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-29 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-29 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-29 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-29 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-28 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 2e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 6e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 6e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 7e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.001 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.001 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 | |
| g1xew.1 | 329 | c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi | 0.003 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.003 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.003 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 130 bits (327), Expect = 6e-35
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I +G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------V 99
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
++ +Q ++ T++E I + D+ + + + +TV+G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG+R R+S+A + L LD P LD V ++ C +T I
Sbjct: 156 GVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ E D++ +L G + ++G
Sbjct: 215 TSKM--EHLRKADKILILHQGSSYFYG 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 128 bits (323), Expect = 6e-35
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 20/235 (8%)
Query: 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114
K++T + + L+ + + G ++MGPSGSGKST+L + L G
Sbjct: 5 KNVTKTYKMGEEIIY-ALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPT--EG 60
Query: 115 TILLNGHK---------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE 165
+ ++ K TK+ +V Q NLI LT E + + M E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 166 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225
+R + L++ N +SGG+++RV+IA + P ++ D+PT L
Sbjct: 121 RRKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 226 DSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279
DS + Q L+ L+ + G+TV+ H V +R+ L G+ +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 126 bits (317), Expect = 6e-34
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 17/228 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+T G + L + G L+GPSG GK+T L ++ G I
Sbjct: 12 LTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGD 67
Query: 121 H-KTKLSFGTA--AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
T L + V Q + +TV E I++ +++ K P E V +
Sbjct: 68 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELL 124
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
+++ + +SGG+R+RV++A I++ P +L +DEP S LD+ + +
Sbjct: 125 QIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 179
Query: 238 RCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ L + T I H E + DR+ +++ G+ + G + +
Sbjct: 180 KKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 122 bits (309), Expect = 1e-32
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
N +L+ + E G A +G SG GKSTL++ + SG IL++GH K
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIK 83
Query: 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
S + Q DN++ + TV+E I +++ + K I M L
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLP 141
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
DT +G ++ +SGG+++R+SIA L P +L LDE TS LD + + + L L
Sbjct: 142 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
S+ RT + H+ S D++ ++ G V G E A+ G
Sbjct: 201 SK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHR---ELIAKQGA 245
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 122 bits (307), Expect = 1e-32
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ G+ +L+G++ E G + L+GP+G+GK+T L +S+ + + SG + + G
Sbjct: 8 LRKRIGKKE-ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFG 63
Query: 121 HKTKLSFGTA----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
+Y+ ++ + E + + A SE +VER
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEI 120
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
GL + + + S G R++ IA +++ PRL LDEPTSGLD A V +
Sbjct: 121 AGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 175
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L+ S++G T++ S H EV L DR+ L+ G V G E
Sbjct: 176 LKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 120 bits (303), Expect = 7e-32
Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 26/240 (10%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ GE L+G++ G +T ++GP+GSGKSTL++ ++ L ++ G +
Sbjct: 10 IVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFEN 65
Query: 121 HKTKLSFGTAAY------VTQDDNLIGTLTVRETISYSARLRLP----------DKMPWS 164
Y Q + +TV E +
Sbjct: 66 KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 125
Query: 165 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224
E + + + L D G +SGG+ + V I ++ P+++ +DEP +G
Sbjct: 126 EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ A + + L G T + H+ V D LY++ G+ + G +
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 120 bits (303), Expect = 9e-32
Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 29/242 (11%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
+ G VL+G++ A G + +++G SGSGKST L ++ L G I++NG
Sbjct: 8 LHKRYGGHE-VLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FL--EKPSEGAIIVNG 63
Query: 121 HKTKLSFGTA------------------AYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162
L V Q NL +TV E + + L +
Sbjct: 64 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLS 121
Query: 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222
+ R + + ++G+ + A + +SGG+++RVSIA + M P +L DEPT
Sbjct: 122 KHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
S LD V + ++ L+ +G+T++ H+ + + L GK G+
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQV 236
Query: 283 FE 284
F
Sbjct: 237 FG 238
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 118 bits (296), Expect = 5e-31
Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA---FLSGTIL 117
+ + G H ++G+ G + L+G +G+GK+T L A++ + + +G +
Sbjct: 12 LHVYYGAIH-AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
Query: 118 LNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
N ++ A V + + LTV E + A R K KR L +
Sbjct: 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR---KDKEGIKRDLEWIFSLFP 127
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L++ + G +SGGE++ ++I ++ RP+LL +DEP+ GL V + +
Sbjct: 128 RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ ++++G T++ ++ Y+L G+ V G+ S +
Sbjct: 183 QKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 117 bits (295), Expect = 6e-31
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 64 SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK- 122
T L ++ + G + ++G SG+GKSTL+ ++ G++L++G +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL 69
Query: 123 TKLSFGTA-------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
T LS + Q NL+ + TV ++ L P E + V +
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLS 126
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+GL D D+ N +SGG+++RV+IA + P++L DE TS LD A + +
Sbjct: 127 LVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 236 TLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L+ ++R G T++ H+ V + D + ++S G+ + S F
Sbjct: 182 LLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 113 bits (285), Expect = 1e-29
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 32/240 (13%)
Query: 58 TVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
++++ L + L L+G G + L+GP+G+GKSTLL ++ + G+I
Sbjct: 1 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQ 56
Query: 118 LNGH------KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
G TKL+ AY++Q V ++ + + L+
Sbjct: 57 FAGQPLEAWSATKLALHR-AYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLN 107
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFLDEPTSG 224
+ L D +SGGE +RV +A +L +LL LDEP +
Sbjct: 108 DVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 162
Query: 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
LD A + + L L + G ++ S H + R +LL GGK + G
Sbjct: 163 LDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (286), Expect = 1e-29
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--- 121
N VL+GLT PG +TAL+GP+GSGKST+ L L G +LL+G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNL--YQPTGGQLLLDGKPLP 79
Query: 122 --KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ + A V Q+ + G +++E I+Y + + + + I GL
Sbjct: 80 QYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS-GL 137
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
DT + +SGG+R+ V++A ++ +P +L LD+ TS LD+ + V Q L
Sbjct: 138 PQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 240 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
R+V+ S + E D + L GG G + + G
Sbjct: 197 SPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQ---QLMEKKGC 244
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 114 bits (286), Expect = 1e-29
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V + ++ +L ++ A+P ++ A GPSG GKST+ L +G I ++G
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDG 63
Query: 121 HK-TKLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+S +V+QD ++ T+RE ++Y D+ W L
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLD-LAFARSF 121
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
+ D +T +G ++ ISGG+R+R++IA L P++L LDE T+ LDS + V +
Sbjct: 122 VENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
L L + GRT + H+ S D++Y + G+ G+ + E A
Sbjct: 181 ALDSLMK-GRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHN---ELVATHPL 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 113 bits (285), Expect = 2e-29
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 17/232 (7%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124
G L + G AL+G SGSGKST+ ++ R G IL++GH +
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID--EGHILMDGHDLR 80
Query: 125 LSFGTA-----AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ A V+Q+ +L +++ + + I +
Sbjct: 81 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFI--NKM 138
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ DT+IG + +SGG+R+R++IA +L +L LDE TS LD+ + + L
Sbjct: 139 DNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
L + RT + H+ S E D + ++ G V G S E AQ G
Sbjct: 198 LQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHS---ELLAQHGV 243
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 112 bits (281), Expect = 5e-29
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V GE + ++ + G L+GPSG GK+T L ++ + G I +
Sbjct: 9 VWKVFGEVT-AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGD 64
Query: 121 HK---------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE 171
A V Q L +TV + I++ +LR K+P E V
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVR 121
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
+GL + + +SGG+R+RV++ I+ +P++ +DEP S LD+
Sbjct: 122 EVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 232 FVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ L+ L + G T I H E + DR+ +++ G G ++
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 111 bits (280), Expect = 7e-29
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 61 VTLS-NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN 119
+ ++ +L+ + + G + ++G SGSGKSTL + R +G +L++
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RF--YIPENGQVLID 63
Query: 120 GH-----KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTI 174
GH V QD+ L+ ++ + IS + +K+ ++ K I
Sbjct: 64 GHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFI 122
Query: 175 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234
E+ I G+SGG+R+R++IA ++ P++L DE TS LD + +
Sbjct: 123 SELREGYNT---IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ + + + GRTVI H+ S + DR+ ++ GK V G+
Sbjct: 180 RNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 108 bits (270), Expect = 7e-28
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 24/219 (10%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
++L +DL+V G VLE +T E G + GP+G GK+TLL +S+ L
Sbjct: 1 SKLEIRDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 54
Query: 110 AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
I+ NG G ++ ++ + ++V + + A L +
Sbjct: 55 KG---EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNE 106
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
+ + + + D L +S G RRV +A +L+ + LD+P +D +
Sbjct: 107 IMDALESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268
V +++ + ++ VI S E D L
Sbjct: 161 KHKVLKSILEILKEKGIVIISSR----EELSYCDVNENL 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 106 bits (267), Expect = 4e-27
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 17/228 (7%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VT + GE V + + G +GPSG GKSTLL ++ + + +
Sbjct: 6 VTKAWGEVV-VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGE 61
Query: 121 H---KTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
T + V Q L L+V E +S+ +L V + +
Sbjct: 62 KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVL 118
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
L D +SGG+R+RV+I ++ P + LDEP S LD+A + +
Sbjct: 119 QLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 238 RCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L R GRT+I H E L D++ +L G+ G+ +
Sbjct: 174 SRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 101 bits (252), Expect = 4e-25
Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
R+ K+++ G+ L+ + E G ++GPSG+GK+T + ++ +
Sbjct: 2 VRIIVKNVSK--VFKKGKVV-ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 110 AFLSGTILLNGHK--------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
+G + + V Q L LT E I++ KM
Sbjct: 59 ---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KM 112
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221
E R VE + + + R +SG +++RV++A ++ P LL LDEP
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 222 TSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
S LD+ ++ + SR G T++ H P +++F + DR+ +L GK V G+
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
Query: 281 AAFE 284
++
Sbjct: 227 DLYD 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 95.5 bits (237), Expect = 5e-23
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 19/218 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-- 128
L+ L+ E G ++GP+G+GK+ L+ ++ ++ ILL+G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDVTDLSPEK 71
Query: 129 -TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187
A+V Q+ +L + V++ + + + K KR V T ++ ++ D
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEF----GMRMKKIKDPKR--VLDTARDLKIEHLLDRNP 125
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRT 246
SGGE++RV++A ++ P++L LDEP S LD + L L ++ T
Sbjct: 126 LTL-----SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
V+ H +E + DR+ ++ GK + G+ FE
Sbjct: 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 88.1 bits (218), Expect = 2e-20
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA---AYVTQDD 137
L+GP+G+GKS L+ ++ + + G + LNG +V QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDY 79
Query: 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197
L L+V I+Y + E+ V ++G+ D SG
Sbjct: 80 ALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----SG 129
Query: 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSS 256
GER+RV++A ++++PRLL LDEP S +D + + LR + ++ H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-I 188
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFE 284
E L D + ++ G+ V G+ F
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 59.6 bits (143), Expect = 4e-11
Identities = 22/193 (11%), Positives = 45/193 (23%), Gaps = 34/193 (17%)
Query: 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145
+ G G GK+TL+ + RL +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEV------------------------ 36
Query: 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205
R +K+ + L + + +
Sbjct: 37 -RDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE---LAIPILERAY 92
Query: 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265
R +++ +DE + F + + V+A+I +V L +
Sbjct: 93 REAKKDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEI 149
Query: 266 YLLSGGKTVYFGE 278
L G +
Sbjct: 150 RRLPGAVLIELTP 162
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH-LRGISGGERRRV 203
+ ++ + + + E G++ A + + + +SGGE+
Sbjct: 282 IYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVA 341
Query: 204 SIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259
++AL LDE + LD + +R I + +F
Sbjct: 342 ALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMF 399
Query: 260 ELFDRLY 266
E D L
Sbjct: 400 EKSDALV 406
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.002
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 72 LEGLTGYAEPGT-------LTALMGPSGSGKSTLLDALS 103
L Y T+++GP+GSGKS ++DA+S
Sbjct: 8 LSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAIS 46
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF 111
G + L GPS GKST++ L R+ + F
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHF 31
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (90), Expect = 6e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF 111
GTL + PSG+GKS+L+ AL
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDT 31
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.5 bits (88), Expect = 6e-04
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
L + GP+G GKST L+++L ++A++ G I+
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTIL 117
G + L G GSGKST+ +AL++ L
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 38.1 bits (87), Expect = 0.001
Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 12/202 (5%)
Query: 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134
L G E ++T G GSGK+ ++ L + FL K +++ A Y+
Sbjct: 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEA-VSKGEVAQPKAVYID 85
Query: 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194
E R+ + + +T+++ T + +
Sbjct: 86 T-----------EGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 134
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254
I G ++ + + R + TL L+ V+ +Q
Sbjct: 135 IQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 194
Query: 255 SSEVFELFDRLYLLSGGKTVYF 276
S++ F GG V
Sbjct: 195 SAKPDAFFGMAEQAIGGHIVGH 216
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 37.3 bits (85), Expect = 0.001
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146
L G S +GKS ++ L S L G L + D + ++
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPE 67
Query: 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
A M + R +++ +
Sbjct: 68 FRALEGAWAEGVVAMARAGARIIIDDVFLGG 98
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.002
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 87 LMGPSGSGKSTLLDALSSRL 106
LMG SGSGKS + ++ +L
Sbjct: 11 LMGVSGSGKSAVASEVAHQL 30
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.003
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 53 TWKDLTVMVTLSNG--ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
T K + ++ + VL + GT+ AL+ P G+GKS L L++++A
Sbjct: 2 THKPINILEAFAAAPPPLDYVLPNM----VAGTVGALVSPGGAGKSMLALQLAAQIAGG 56
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.5 bits (83), Expect = 0.003
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLS 113
+ GPSG+GKSTLL L + + S
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFS 32
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 0.003
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLS 113
L GPSG+GKSTLL L +S S
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFS 31
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.64 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.18 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.88 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.3 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.22 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.6 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.49 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.31 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.26 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.25 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.22 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.21 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.17 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.11 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.02 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.0 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.91 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.79 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.76 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.76 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.75 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.66 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.66 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.6 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.58 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.58 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.58 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.58 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.51 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.42 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.38 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.37 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.36 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.34 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.29 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.28 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.24 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.23 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.21 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.21 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.21 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.18 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.13 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.13 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.12 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.12 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.09 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.08 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.07 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.02 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.99 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.95 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.92 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.89 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.89 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.83 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.82 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.82 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.79 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.76 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.75 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.71 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.66 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.63 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.63 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.63 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.62 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.62 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.46 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.45 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.45 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.45 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.41 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.41 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.4 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.37 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.25 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.24 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.24 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.21 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.18 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.03 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.98 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.97 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.96 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.96 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.93 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.9 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.86 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.84 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.8 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.76 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.72 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.71 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.69 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.66 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.66 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.62 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.56 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.53 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.49 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.47 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.44 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.4 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.39 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.37 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.3 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.3 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.27 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.24 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.24 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.19 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.18 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.15 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.13 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.1 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.01 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.01 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.0 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.99 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.97 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.96 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.92 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.87 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.84 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.78 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.73 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.7 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.69 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.67 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.67 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.55 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.52 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.49 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.45 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.38 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.35 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.32 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.27 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.27 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.26 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.17 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.14 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.13 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.05 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.97 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.83 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.79 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.74 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.58 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.49 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.16 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.08 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.06 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.04 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.84 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.74 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.61 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.29 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.21 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.04 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.03 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.88 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.77 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.55 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.21 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.21 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.18 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.78 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.21 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.19 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.01 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.76 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.33 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.04 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.56 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.55 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.53 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.68 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.42 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 86.06 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.78 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.4 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.01 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.95 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.25 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.17 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.23 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.7 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.39 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 81.24 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 81.08 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.01 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.73 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.68 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.34 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.1 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.5e-57 Score=437.48 Aligned_cols=217 Identities=25% Similarity=0.400 Sum_probs=199.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++||++.| +++++|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.
T Consensus 3 ~i~v~nl~k~y-----g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred cEEEEeEEEEE-----CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhh
Confidence 48999999999 4678999999999999999999999999999999999999996 999999998742
Q ss_pred ---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 125 ---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..++.+|||||++.++|.+||+||+.++...+ ..+..+.++++.++++.++|++..|+ ++++|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~-----~p~~LSGGqkQ 146 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQRQ 146 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHHHH
T ss_pred hcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHH
Confidence 12357999999999999999999999998875 46778888999999999999988776 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||+ +++..+||||++|++|++++.|+++
T Consensus 147 Rv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~ 225 (240)
T d1g2912 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (240)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999876 99999999995 7899999999999999999999999
Q ss_pred hHHH
Q 010936 281 AAFE 284 (497)
Q Consensus 281 ~~~~ 284 (497)
+++.
T Consensus 226 el~~ 229 (240)
T d1g2912 226 EVYD 229 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-57 Score=440.57 Aligned_cols=216 Identities=23% Similarity=0.377 Sum_probs=192.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. ..+
T Consensus 7 I~v~nlsk~y-----g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r 78 (239)
T d1v43a3 7 VKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDR 78 (239)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGG
T ss_pred EEEEEEEEEE-----CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccc
Confidence 8999999999 5688999999999999999999999999999999999999996 9999999998642 245
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||||++.+||.+||+||+.|+...+ ..++.+.+++++++++.+||++..|+ ++.+|||||||||+||||
T Consensus 79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 79 NISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHH
T ss_pred eEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHhh
Confidence 7999999999999999999999987654 56788888999999999999988776 556899999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+.+|+||||||||+|||+.++.++++.|++++++ |+|||++|||+ .++.++||||++|++|++++.|+++++..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999775 99999999995 78999999999999999999999998753
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-58 Score=440.29 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=162.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++||+++| +.+++|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .++
T Consensus 1 Iev~nv~k~y-----g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhc
Confidence 6899999999 4688999999999999999999999999999999999999996 9999999997532 246
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||||++.+++.+||+||+.|+...+ ..++++.++++.++++.++|.+..|+. +++|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~-----~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 73 GVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGRT 144 (232)
T ss_dssp CEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHHHH
T ss_pred eeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 7999999999999999999999997654 355667788899999999999888774 56799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+.+|++|||||||+|||+.++.++++.|+++.+ .|+|||++||++ +++..+||||++|++|++++.|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999999999999999999966 599999999995 78999999999999999999999998754
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.5e-57 Score=437.25 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=198.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++||+++|.. +...+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|++..
T Consensus 3 ~i~v~nlsk~y~~---g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC---CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhh
Confidence 3899999999942 3467999999999999999999999999999999999999996 999999998742
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..++++|||||++.+||.+||+||+.|++..+ ..+.++.+++++++++.+||++..|+ ++++||||||||
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~p~~LSGGqkQR 148 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQR 148 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHH
T ss_pred cchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhC-----ChhhCCHHHHhH
Confidence 12457999999999999999999999987654 46778888999999999999888777 456799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+ .++.++||||++|++|++++.|++++
T Consensus 149 vaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~e 227 (242)
T d1oxxk2 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED 227 (242)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 99999999995 78999999999999999999999998
Q ss_pred HHH
Q 010936 282 AFE 284 (497)
Q Consensus 282 ~~~ 284 (497)
+..
T Consensus 228 l~~ 230 (242)
T d1oxxk2 228 LYD 230 (242)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-56 Score=431.59 Aligned_cols=220 Identities=25% Similarity=0.372 Sum_probs=197.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++||+++|..+. ...++|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 1 mi~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESE 76 (240)
T ss_dssp CEEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHH
T ss_pred CEEEEeEEEEeCCCC-eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhh
Confidence 378999999996432 2246899999999999999999999999999999999999986 99999999985321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
++.+|||||++.++|.+||+||+.+++..+ +.++++.++++.++|+.+||.+..|+ ++++||||||||
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~-----~~~~LSGG~~QR 148 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQR 148 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSS-----CBSCCCHHHHHH
T ss_pred hhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHH
Confidence 246999999999999999999999998764 45667778899999999999988776 456899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+ .++..+||||++|++|++++.|++++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~e 227 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 227 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTT
T ss_pred HHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 99999999995 78999999999999999999999998
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
++
T Consensus 228 i~ 229 (240)
T d3dhwc1 228 VF 229 (240)
T ss_dssp TT
T ss_pred HH
Confidence 63
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-55 Score=422.82 Aligned_cols=217 Identities=26% Similarity=0.372 Sum_probs=191.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
|+++||+++|..++ ....+|+||||+|++||++||+|||||||||||++|+|+.+|+ +|+|+++|+++...
T Consensus 2 I~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhc
Confidence 78999999996432 2345899999999999999999999999999999999999996 99999999985321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHH
Q 010936 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 201 (497)
++.+|||||++.++|.+||+||+.++...+.....+..+..+++.++|+.++|.+ .+++ +|.+|||||||
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGGqkQ 152 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQ 152 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHH
T ss_pred chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcC-----ChhhCCHHHHH
Confidence 2459999999999999999999999987654445667778888999999999975 3555 56689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |+|||++|||+ +. .++||||++|++|++++.|++
T Consensus 153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HH-HHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999999875 99999999995 44 489999999999999999875
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.8e-56 Score=426.28 Aligned_cols=211 Identities=26% Similarity=0.421 Sum_probs=191.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|||++| + ..+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++
T Consensus 2 i~v~nlsk~y-----~-~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 2 IEIESLSRKW-----K-NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp EEEEEEEEEC-----S-SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEe-----C-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHh
Confidence 7899999999 2 24899999999999999999999999999999999999996 9999999998643 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||||++.+||.+||+||+.|+...+. ... .+++.++++.++|.+..|+.+ .+|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAra 141 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cceeeccccccCccccHHHHHHHHHhhcc---ccH---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhh
Confidence 79999999999999999999999987652 222 356889999999998888754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+++|++|||||||+|||+.++.++++.|+++.+ .|.|||++||++ .++.++||||++|++|++++.|+++++.
T Consensus 142 L~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999976 599999999995 7899999999999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-54 Score=423.26 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=195.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||+++| +.+++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~Lev~nl~k~y-----g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEEEEEEEE-----CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccc
Confidence 38999999999 4678999999999999999999999999999999999999986 9999999997521
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcc
Q 010936 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWH 191 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~ 191 (497)
.++++|||||++.++|.+||.||+.++.... ...+..+.++++.++++.++|.+. .++ +
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 146 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK-----Y 146 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS-----C
T ss_pred hhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc-----C
Confidence 1246999999999999999999999875332 245677788899999999999764 344 4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
+.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++|||+ .++..+||||++|++|
T Consensus 147 p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 147 PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 225 (258)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCH-HHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999998999999999995 7899999999999999
Q ss_pred eEEEEeCchhHHH
Q 010936 272 KTVYFGETSAAFE 284 (497)
Q Consensus 272 ~iv~~G~~~~~~~ 284 (497)
++++.|++++++.
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEcCHHHHHh
Confidence 9999999999754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.6e-54 Score=415.52 Aligned_cols=217 Identities=29% Similarity=0.393 Sum_probs=200.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----c
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----F 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~ 127 (497)
|.++||+++| +++++|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++... +
T Consensus 3 I~v~nl~k~y-----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 3 VVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHH
T ss_pred EEEEeEEEEE-----CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHH
Confidence 7899999999 5688999999999999999999999999999999999999996 99999999985322 3
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||||++.+++++||.||+.|...++ ..+..+..+.++++++.++|.+..+++++ +|||||||||+|||
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIAR 146 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHH
T ss_pred hhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999999998775 34567777889999999999988888664 69999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
||+++|++|||||||+|||+.++.+++++|++++++|+|||++||++ +++..+||||++|++|++++.|+++++...
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999999998999999999995 789999999999999999999999998753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.4e-54 Score=415.85 Aligned_cols=217 Identities=23% Similarity=0.349 Sum_probs=191.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-- 126 (497)
.+.|+++||++.| +++++|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 4 d~~Lev~~l~k~y-----g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPA 75 (240)
T ss_dssp SEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred ceEEEEeeEEEEE-----CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccH
Confidence 3679999999999 5688999999999999999999999999999999999999996 99999999986421
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHH
Q 010936 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerq 201 (497)
+..++|+||+..+|+.+||+||+.++...+. .....++.++++++.+ +|.+..++.+ .+|||||||
T Consensus 76 ~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~Q 146 (240)
T d1ji0a_ 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHH
T ss_pred HHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCch-----hhCCHHHHH
Confidence 2358999999999999999999988765432 2233445566777766 6777777755 479999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+++|++|||||||+|||+.++.++++.|++++++|+|||++||++ +++.++||||++|++|++++.|++++
T Consensus 147 rv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~e 225 (240)
T d1ji0a_ 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999998999999999995 78999999999999999999999998
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 226 l~ 227 (240)
T d1ji0a_ 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-53 Score=414.42 Aligned_cols=220 Identities=20% Similarity=0.298 Sum_probs=194.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|||++| +.+++|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 4 iL~v~nlsk~y-----g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (254)
T d1g6ha_ 4 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 75 (254)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEEEEEEE-----CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHH
Confidence 48999999999 5678999999999999999999999999999999999999996 99999999986321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRL----------PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
+..++|+||++.+++.+||+||+.++...+. ......++..+++.++++.+++.+..|+.++ +
T Consensus 76 ~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 150 (254)
T d1g6ha_ 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----E 150 (254)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh-----h
Confidence 2349999999999999999999998753321 1112234555778899999999988887665 6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++||++ +++.++||||++|++|+++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999988999999999996 6899999999999999999
Q ss_pred EEeCchhHHH
Q 010936 275 YFGETSAAFE 284 (497)
Q Consensus 275 ~~G~~~~~~~ 284 (497)
+.|+++|+..
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEecHHHHhh
Confidence 9999988653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.6e-53 Score=405.93 Aligned_cols=210 Identities=26% Similarity=0.409 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
+++ ++.+.+ ++..+ ||||++. +|+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++
T Consensus 3 l~v-~~~k~~-----g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r 70 (240)
T d2onka1 3 LKV-RAEKRL-----GNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp EEE-EEEEEE-----TTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEE-EEEEEE-----CCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHc
Confidence 455 456666 33333 8999995 6899999999999999999999999996 9999999998532 346
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||||++.+||++||+||+.|+++ ..++.+.++++.++++.+||.+..++. +++|||||||||+||||
T Consensus 71 ~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAra 140 (240)
T d2onka1 71 GIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHH
T ss_pred CceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999999743 345677788999999999999888774 56799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+++|++|||||||+|||+.++..+++.|+++.++ |.|||++||++ .++.++||||++|++|++++.|+++++..
T Consensus 141 l~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 99999999999999999999999999999999775 99999999995 78999999999999999999999998753
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-52 Score=401.96 Aligned_cols=218 Identities=26% Similarity=0.431 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|||++|+. +.+.+|+||||+|++||.+||+||||||||||+++|+|+++|. +|+|.+||+++..
T Consensus 1 eI~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 74 (241)
T d2pmka1 1 DITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74 (241)
T ss_dssp EEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHH
T ss_pred CeEEEEEEEEeCC---CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhh
Confidence 3789999999942 3567999999999999999999999999999999999999986 9999999998643
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHH--HHHHHc-CCCccccccccCcccCCCCHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVE--RTIIEM-GLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++||+|++.+|+. ||+||+.++.. ..+.++.....+ .+.+.+ .+....++.++. .+..||||||||
T Consensus 75 lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~QR 147 (241)
T d2pmka1 75 LRRQVGVVLQDNVLLNR-SIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQR 147 (241)
T ss_dssp HHHHEEEECSSCCCTTS-BHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHHH
T ss_pred hhceEEEEecccccCCc-cccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHHH
Confidence 13579999999998875 99999988632 122222211111 111222 345667888876 678899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||||+++|+|||||||||+||+.++..|++.|+++.+ |+|+|++||++ + ..+.||+|++|++|++++.|+++++
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~-~~~~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL-S-TVKNADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSG-G-GGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCH-H-HHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 89999999996 3 4578999999999999999999987
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
+.
T Consensus 225 l~ 226 (241)
T d2pmka1 225 LS 226 (241)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-51 Score=401.82 Aligned_cols=219 Identities=29% Similarity=0.410 Sum_probs=183.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|+. ..++.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|++||+++..
T Consensus 11 ~I~~~nvsf~Y~~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN--RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTT--STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEECCC--CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHH
Confidence 4999999999942 13457999999999999999999999999999999999999996 9999999998642
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++.++||+|++.+|+. ||+||+.++.... ....... ....+.++ .|.+..++.+++ ++..||||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~~LSGGqk 157 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----PTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGSQLSGGQR 157 (251)
T ss_dssp HHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCSSSCHHHH
T ss_pred HHHHhhhccccccccCc-chhhhhhhhhccc----chHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCccCChhHc
Confidence 23579999999999875 9999999874321 1122111 11122232 556677888875 6788999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||+|||||+++|+|||||||||+||+.++..+++.|+++.++ |+|||++||++ + ..+.||+|++|++|++++.|++
T Consensus 158 QRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~-~~~~aDrI~vl~~G~iv~~Gt~ 235 (251)
T d1jj7a_ 158 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-S-LVEQADHILFLEGGAIREGGTH 235 (251)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-H-HHHTCSEEEEEETTEEEEEECH
T ss_pred eEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-H-HHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998764 89999999995 4 4577999999999999999999
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++++
T Consensus 236 ~eLl~ 240 (251)
T d1jj7a_ 236 QQLME 240 (251)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=6.1e-52 Score=402.82 Aligned_cols=214 Identities=27% Similarity=0.446 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||||+|+ +.+.+|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||+++..
T Consensus 1 mle~knvsf~Y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 73 (242)
T d1mv5a_ 1 MLSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (242)
T ss_dssp CEEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEECC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHH
Confidence 379999999994 3467999999999999999999999999999999999999996 9999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++||+|++.+|+. ||+||+.++... ...... +.+.++.. .+.+..++.+|+ ++..||||
T Consensus 74 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LSGG 143 (242)
T d1mv5a_ 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDED----LWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGG 143 (242)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHH
T ss_pred HHhheEEEccccccCCc-chhhheeccccc----ccchhh----HHHHHHHHHhhhhhccCcccccccccC-CCCCCCHH
Confidence 24679999999999987 999999876432 122222 22233322 334567788876 56789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|+|||||||||+||+.++..+++.|+++.+ |+|||++||++ +.+ ..||+|++|++|++++.|+
T Consensus 144 qkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~~G~ 220 (242)
T d1mv5a_ 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGK 220 (242)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSC
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999964 89999999996 444 5699999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
+++++.
T Consensus 221 ~~eLl~ 226 (242)
T d1mv5a_ 221 HNELVA 226 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-50 Score=394.21 Aligned_cols=215 Identities=28% Similarity=0.391 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++||++.|+. ..+++|+||||+|++||++||+||||||||||+++|+|+++|. +|+|++||+++...
T Consensus 13 ~I~~~nvsf~Y~~---~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEeCC---CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhh
Confidence 4999999999942 3457999999999999999999999999999999999999996 99999999986431
Q ss_pred -cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 010936 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 127 -~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (497)
++.++||+|++.+|+. |+++|+.++... ..+.++ +.++++..+ +++..++.+++ ++..||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~~----~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGG 156 (253)
T d3b60a1 87 LRNQVALVSQNVHLFND-TVANNIAYARTE----EYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGG 156 (253)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTTS----CCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHH
T ss_pred hhheEEEEeeccccCCc-chhhhhhhcCcc----cCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHH
Confidence 3569999999999876 999999886321 223322 233333332 34456888876 67899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|++||++ + ....||+|++|++|++++.|+
T Consensus 157 qkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~-~~~~~D~v~vl~~G~Iv~~G~ 233 (253)
T d3b60a1 157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL-S-TIEQADEIVVVEDGIIVERGT 233 (253)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCG-G-GTTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH-H-HHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999999996 3 457899999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
+++++.
T Consensus 234 ~~eLl~ 239 (253)
T d3b60a1 234 HSELLA 239 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-50 Score=396.10 Aligned_cols=214 Identities=29% Similarity=0.379 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||+|+|+. ..+++|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 16 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 16 RIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHH
T ss_pred EEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHH
Confidence 4999999999953 3467999999999999999999999999999999999999996 9999999998642
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++||+|++.+|+. ||+|||.++... ...+ .+.++++..+ |.+..++.+|+ .+..||||
T Consensus 90 lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~~-----~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgG 158 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSD-TVKENILLGRPT-----ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGG 158 (255)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHH
T ss_pred hhheeeeeeccccCCCC-CHHHHHhccCcC-----CCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHH
Confidence 23679999999998875 999999887321 2222 2334444444 45567888886 67789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+++|+|||||||||+||+.++..+++.|+++.+ ++|+|++||++. ....||+|++|++|++++.|+
T Consensus 159 q~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G~ 235 (255)
T d2hyda1 159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGT 235 (255)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 799999999963 457899999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
+++++.
T Consensus 236 ~~eLl~ 241 (255)
T d2hyda1 236 HRELIA 241 (255)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-46 Score=363.08 Aligned_cols=207 Identities=27% Similarity=0.395 Sum_probs=179.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
+.|+++|++. ..+|+||||+|++||++||+||||||||||+++|+|+. ++ +|+|.++|++....
T Consensus 2 ~il~~~dv~~---------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 2 IVMQLQDVAE---------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEEECC---------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHH
T ss_pred eEEEEECccc---------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHH
Confidence 5688999853 34799999999999999999999999999999999976 43 89999999975321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
....+|++|+.......++++++.+...-+ ...+.++++++.++|.+..++.+ +.|||||||||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~ 135 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVR 135 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--------TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHHhhceeeeccccCCccccHHHHhhhccchh--------hHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHH
Confidence 135789999987766779999998764321 22356788999999998887755 479999999999
Q ss_pred HHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 205 IALEILM-------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 205 IA~aL~~-------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||+|++ +|+||||||||+|||+.++..+.++|++++++|+|||++||++ +++.++|||+++|++|++++.|
T Consensus 136 iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G 214 (231)
T d1l7vc_ 136 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASG 214 (231)
T ss_dssp HHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCS
T ss_pred HHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEC
Confidence 9999997 7799999999999999999999999999998999999999995 7899999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 215 ~~~ev~ 220 (231)
T d1l7vc_ 215 RREEVL 220 (231)
T ss_dssp BHHHHS
T ss_pred CHHHHh
Confidence 998874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-46 Score=369.23 Aligned_cols=196 Identities=24% Similarity=0.348 Sum_probs=162.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++| +++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g--------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG--------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS--------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC--------EEEEEeccccccCc-eeec
Confidence 467999999999999999999999999999999999999996 99999987 38999999999886 9999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsg 224 (497)
|+.|+... ........++. ......+.+..++.++. .+.+|||||||||+|||||+++|+||||||||++
T Consensus 116 ni~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVSY------DEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSCC------CHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred cccccccc------cchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 99876421 12111111111 11223455667777765 5678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.++..+++.+......|+|+|++||++ +..+.||||++|++|++++.|+++++..
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999986544444689999999995 3568899999999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-44 Score=340.97 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=164.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|||+.| ++++|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.+||+++...+..+
T Consensus 2 ~lev~~ls~~y------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGY------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEES------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGGGE
T ss_pred eEEEEEEEEEe------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHhcCcE
Confidence 48999999998 256999999999999999999999999999999999999996 999999999976656789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|+||+..+++.+|+.|++.+...++.. .... ..+.+.++.+++.+. ++.+ .+|||||||||+|||+|+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~-~~~~-----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCccc-cccc-----CcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999998776532 2222 335677888887553 3333 469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.+|+++||||||+|||+.++..+++.|+++.+++.++|+++|+. ..+||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999877534444444442 257999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.64 E-value=5.4e-18 Score=153.28 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=100.2
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCC--C--CCCCCCCHHHHHHHHhhccCCCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD--D--NLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~--~--~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
++|+||||||||||+++|+|.+++. .|.+...|.+.....++.++.... . ......+..+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 67 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTS------------K 67 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCC------------S
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhh------------h
Confidence 7899999999999999999999885 899998876532221222221111 0 0000000000 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
... ...+. +. ....+|+|+++|.++++++..+|+++++|||.... .....+.+.|.++
T Consensus 68 ~~~-----------~~~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~ 125 (178)
T d1ye8a1 68 KLV-----------GSYGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQI 125 (178)
T ss_dssp SEE-----------TTEEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHH
T ss_pred hhh-----------hhhhc----Cc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHH
Confidence 000 00000 00 11247999999999999999999999999985443 3345666666665
Q ss_pred Hh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 241 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 241 ~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
.+ .+.++|+++|+. ....++|++..+.+|+++.-+
T Consensus 126 l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 126 MHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECC
T ss_pred hccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEEC
Confidence 55 489999999995 356789999999999997654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=5.9e-10 Score=108.34 Aligned_cols=77 Identities=31% Similarity=0.308 Sum_probs=65.1
Q ss_pred cCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE
Q 010936 192 LRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL----~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
...+|+|||+.+.++..+ ...|.++++|||-++|||.....+.+.|++..+ +.-||++||.| .+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence 457999999998877654 357799999999999999999999999999865 57899999997 46789999976
Q ss_pred --eeCC
Q 010936 268 --LSGG 271 (497)
Q Consensus 268 --L~~G 271 (497)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=1.3e-09 Score=109.94 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 193 RGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL----~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
..+|||||.+++||..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+| .+.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998877544 356789999999999999999999999999866567799999996 589999998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.30 E-value=1.9e-06 Score=80.22 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
+|+.-....+.+..++|+||+..|=|+.....+.. .++.+.+.+..++++||.. ++..+.
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTALG 163 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTCC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhhh
Confidence 33333333345667999999999999998887755 4555666688999999983 565543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=2.9e-06 Score=79.49 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=36.1
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CCEEEEEeCCC
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~-~L~~l~~~-g~tvI~~tH~~ 254 (497)
-+.+..++|+||+.+|=|+.....+.. .+..+... +..+|++||..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 344567999999999999999988865 46667654 56888898873
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.73 E-value=0.00021 Score=67.18 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=28.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
.+-|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 33455554447999999999999999999987776
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=4.1e-06 Score=73.98 Aligned_cols=35 Identities=31% Similarity=0.281 Sum_probs=30.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467788888877 99999999999999999997443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=5.9e-05 Score=69.73 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
+|+.++++|+||+|||||+|.|.|...-. +|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC---------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCccc
Confidence 58999999999999999999998865432 677653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.26 E-value=0.0045 Score=55.28 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=37.2
Q ss_pred hCCCEEEEeCCCCCC----CHHHHHHHHHHHHH-HHhCCCEEEEEeCCCCh--------HHHhcCCeEEEee
Q 010936 211 MRPRLLFLDEPTSGL----DSAAAFFVTQTLRC-LSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (497)
Q Consensus 211 ~~p~lllLDEPTsgL----D~~~~~~i~~~L~~-l~~~g~tvI~~tH~~~~--------~i~~~~D~v~~L~ 269 (497)
.+|++++.|--+.-. +.......+..+.+ +++.|.|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999766532 33333334444444 44569999999886431 3445788887774
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=5.6e-05 Score=65.15 Aligned_cols=24 Identities=46% Similarity=0.564 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.22 E-value=8.5e-05 Score=64.33 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.|+++.|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999997653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=7.6e-05 Score=66.07 Aligned_cols=26 Identities=42% Similarity=0.730 Sum_probs=23.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999986653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0015 Score=60.83 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Q 010936 208 EILMRPRLLFLDEPTS-----GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 253 (497)
Q Consensus 208 aL~~~p~lllLDEPTs-----gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~ 253 (497)
....+|+++++|--++ --|......++..|+.+++. |.+||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 4457999999996543 12666667888888888764 8899998775
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.11 E-value=0.0033 Score=57.12 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=81.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
=+++|.++.|.|++|+|||||+.-++-.. .. ...+.|+.-+ .+..+.......+.
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~------------------~~~~~~is~e------~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACAN------------------KERAILFAYE------ESRAQLLRNAYSWG 77 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT------------------TCCEEEEESS------SCHHHHHHHHHTTS
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh------------------ccccceeecc------CCHHHHHHHHHHcC
Confidence 48899999999999999999987665321 11 1234454432 35555544443322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH-HHhCCCEEEEeCCCC---CCCHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-ILMRPRLLFLDEPTS---GLDSAAAFF 232 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a-L~~~p~lllLDEPTs---gLD~~~~~~ 232 (497)
.... +. ...+.....+. ........+. .-.|..+ --.+|++++.|--+. +.+......
T Consensus 78 ----~~~~-------~~-~~~~~~~~~~~-----~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~ 139 (242)
T d1tf7a2 78 ----MDFE-------EM-ERQNLLKIVCA-----YPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ 139 (242)
T ss_dssp ----CCHH-------HH-HHTTSEEECCC-----CGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred ----CChH-------HH-hhcCceEEEEe-----ecchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHH
Confidence 1111 11 11222111111 1111222221 1112222 225789999997544 346666566
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCC---------ChHHHhcCCeEEEee
Q 010936 233 VTQTLRCLSR-DGRTVIASIHQP---------SSEVFELFDRLYLLS 269 (497)
Q Consensus 233 i~~~L~~l~~-~g~tvI~~tH~~---------~~~i~~~~D~v~~L~ 269 (497)
.+..|.++++ .+.+++++.|.. ...+..++|-|+.|+
T Consensus 140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 6666666554 689999888742 123566899998885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00015 Score=62.60 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=0.00011 Score=63.97 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+++|+|++|||||||++-|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988766543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.02 E-value=6.6e-05 Score=69.64 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
+|..++++|+||+|||||+|.|.|-..- .+|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhccccc
Confidence 5788999999999999999999886543 2677763
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.00 E-value=0.00017 Score=62.29 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|-++.|+|++||||||+-+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998655
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.91 E-value=0.00022 Score=61.58 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999765
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00028 Score=64.13 Aligned_cols=26 Identities=46% Similarity=0.672 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+|.++.|+||||+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999987543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.0003 Score=69.50 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=23.3
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 76 TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 76 s~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
.+.+.++.+++|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444556699999999999999999985
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.76 E-value=0.00035 Score=59.05 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.9
Q ss_pred eEEEEECCCCChHHHHHHHHH
Q 010936 83 TLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~ 103 (497)
+++.|.|++|||||||.+.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999875
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.76 E-value=0.00029 Score=60.56 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.75 E-value=0.00036 Score=60.10 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999998654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.00035 Score=60.26 Aligned_cols=25 Identities=44% Similarity=0.601 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+.|.||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999987754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.66 E-value=0.00044 Score=59.03 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.60 E-value=0.00051 Score=59.39 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+++|.|++||||||+.+.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999986553
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.58 E-value=0.00045 Score=61.31 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.58 E-value=0.00047 Score=59.11 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.58 E-value=0.00046 Score=60.53 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++||-|++|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998554
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00039 Score=61.05 Aligned_cols=26 Identities=42% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00056 Score=57.59 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.42 E-value=0.00044 Score=60.70 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.38 E-value=0.00076 Score=61.33 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.37 E-value=0.00064 Score=59.26 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.36 E-value=0.00083 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.34 E-value=0.00091 Score=57.89 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.00088 Score=59.30 Aligned_cols=22 Identities=50% Similarity=0.768 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997554
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.00098 Score=57.74 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0013 Score=57.66 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+=+.+|+++.|.||+|+|||||+--++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999999999998877643
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0011 Score=58.40 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.00098 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.001 Score=59.08 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.21 E-value=0.0011 Score=58.07 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-+||+|.+|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.18 E-value=0.00075 Score=58.95 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+||+|.+|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.13 E-value=0.0013 Score=57.28 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.13 E-value=0.00083 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.12 E-value=0.0011 Score=55.72 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.|+|++|+|||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.0014 Score=58.09 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++.|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.0013 Score=58.50 Aligned_cols=21 Identities=57% Similarity=0.812 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.08 E-value=0.0013 Score=58.37 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.07 E-value=0.0012 Score=55.83 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0014 Score=58.85 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999976543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0016 Score=55.33 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.99 E-value=0.0015 Score=56.24 Aligned_cols=22 Identities=50% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0018 Score=57.10 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999854
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.92 E-value=0.0099 Score=58.97 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=37.0
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
|..+|=++|++++..|.. |+.++...+ +.+..|+.|+.+.|-.+ .....+|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhh
Confidence 445677899999999997 566655544 34567999999999843 34444543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.90 E-value=0.0021 Score=56.56 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+|--+.|+||+||||||+.+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 5667789999999999999999843
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.89 E-value=0.0018 Score=56.23 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.89 E-value=0.0016 Score=57.34 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999844
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.83 E-value=0.002 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999997764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.00096 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.82 E-value=0.2 Score=46.31 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.79 E-value=0.0019 Score=59.57 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
...+.|.||+|||||||.+.|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.76 E-value=0.0022 Score=55.47 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|+|++||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998554
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.75 E-value=0.0021 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||++.|.+-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.71 E-value=0.0025 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.++|.+|||||||.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998544
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.66 E-value=0.0025 Score=54.81 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+.|+|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999986653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.64 E-value=0.00083 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.63 E-value=0.0028 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHH
Q 010936 81 PGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
.-+++.++|++||||||+.+-++
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999885
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.63 E-value=0.0027 Score=56.90 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|-||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0028 Score=56.50 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+++|.||+||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999996553
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.62 E-value=0.0025 Score=55.76 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.62 E-value=0.0029 Score=55.26 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.46 E-value=0.0033 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998544
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.45 E-value=0.003 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.45 E-value=0.0029 Score=58.99 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.45 E-value=0.0019 Score=62.54 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~ 109 (497)
+.|.-+.|.|+.||||||||++|++.+++.
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 344558999999999999999999988764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.41 E-value=0.0032 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.0033 Score=55.28 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~ 103 (497)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999996
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.40 E-value=0.0041 Score=56.14 Aligned_cols=27 Identities=44% Similarity=0.459 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|-++.|.|.||||||||.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999997443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0027 Score=61.50 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..-.+||.||+|||||||++.|...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0033 Score=54.64 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+.|+||+||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999844
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.25 E-value=0.0036 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.24 E-value=0.0043 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0046 Score=55.52 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=23.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
=+++|+++.|.||+|+|||||.--++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999987775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0044 Score=53.99 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.|+||+||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.18 E-value=0.0043 Score=53.04 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0037 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0043 Score=59.50 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=32.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~ 142 (497)
++||-|++||||||+.+.|..++... .....+..+++|+.+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh---------------cCCCceEEEeeeeeECCc
Confidence 89999999999999999998765421 001346778888776653
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0058 Score=55.02 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|-+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.97 E-value=0.0048 Score=59.58 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.-.+||.||+|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.96 E-value=0.0056 Score=55.34 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|.||+|+|||||+++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0063 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|.||+|+||||++++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.93 E-value=0.0052 Score=61.06 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.0058 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.87 E-value=0.0051 Score=52.94 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++++|++|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.86 E-value=0.0061 Score=55.28 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=20.3
Q ss_pred EEEECCCCChHHHHHHHHHcCCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+.+.||+|+||||+.++|+..+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999986554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.84 E-value=0.006 Score=52.39 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0056 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0069 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.+++|-|+.||||||+++.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999986543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.76 E-value=0.0069 Score=55.19 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
.+.++.|.||+|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4578999999999999999988744
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.72 E-value=0.0088 Score=53.55 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
+=+.+|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3489999999999999999999876653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.71 E-value=0.0066 Score=55.16 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+.||+|+|||||.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.69 E-value=0.0091 Score=54.03 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999976443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.66 E-value=0.0076 Score=53.80 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~ 103 (497)
++||.|+.||||||+.+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999995
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.66 E-value=0.0074 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0073 Score=52.16 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.62 E-value=0.0074 Score=51.44 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.56 E-value=0.0095 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.+++++||+|+||||.+-=|+-..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999876666443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.01 Score=53.48 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999876653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.49 E-value=0.008 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
|+.-+.++||+|+|||+|.++|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456689999999999999999754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.0094 Score=51.01 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0088 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|.||+|+|||||+++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0097 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.011 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
=+.+|+++.|.||+|+|||||.--++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999987776
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.0081 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0083 Score=51.18 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999987753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.012 Score=50.71 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0097 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.011 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.24 E-value=0.021 Score=50.04 Aligned_cols=32 Identities=31% Similarity=0.233 Sum_probs=25.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
.|+.....+ .|.-+.|.|+||+|||||.-.|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555555 78899999999999999987775
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.0093 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999997765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.011 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.18 E-value=0.011 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.0097 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998863
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.13 E-value=0.01 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-+.|.||+|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47799999999999999998643
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.013 Score=52.42 Aligned_cols=20 Identities=50% Similarity=0.723 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~ 103 (497)
++||.|..||||||..+++.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999996
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.012 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.01 E-value=0.012 Score=49.85 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.01 E-value=0.016 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
...+++++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999887777544
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.00 E-value=0.0064 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=17.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++||-|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999987654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.014 Score=54.19 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+..-+.+.||+|+|||+|.+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 33457799999999999999999654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.011 Score=50.14 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.96 E-value=0.0077 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999998853
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.92 E-value=0.015 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
..+.|.||+|+||||+++.|+..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999976643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.013 Score=50.54 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.018 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.78 E-value=0.014 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.015 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+.||+|+||||+.++++.-+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.70 E-value=0.02 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.0
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998544
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.69 E-value=0.017 Score=50.91 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999986553
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.015 Score=49.54 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.013 Score=51.40 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.64 E-value=0.015 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+.||+|+|||+|.++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.014 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-+.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999888754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.015 Score=49.95 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.52 E-value=0.021 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+..+++++||+|+||||.+-=|+-+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999887666643
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.49 E-value=0.011 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-+.|+|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.45 E-value=0.015 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+..-+.|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34457899999999999999999765
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.016 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.018 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|.+|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999976643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.018 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|.+|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999887754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.012 Score=50.62 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=8.5
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|.+|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.019 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988853
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.32 E-value=0.036 Score=48.41 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=24.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.|+..-. .-.|.-++|.|+||+|||||.-.|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444333 44677899999999999999877763
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.019 Score=51.37 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=27.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 213 p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+++++||. -.+.......+++.|.+..+ ...++++++++
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~ 139 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYA 139 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcH
Confidence 469999996 46777777777777766432 34555666553
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.27 E-value=0.018 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-+.|.||+|+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 36789999999999999999753
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.26 E-value=0.024 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHcCCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+||+|.-.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.02 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++++|.+|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999988743
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.21 E-value=0.021 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
...+++++||+|+||||.+-=|+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999887666643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.022 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
++||-|+.|||||||.+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 889999999999999987753
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.17 E-value=0.015 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.018 Score=52.25 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
+.+++++||.-. |.......+.+.+.+.. ....+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999854 77777777776665432 2456788888864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.017 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++++||+|+||||.+-=|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999998876666443
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.013 Score=50.39 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.4
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|++|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.021 Score=48.70 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.05 E-value=0.022 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
+.++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.97 E-value=0.023 Score=48.62 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010936 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G 104 (497)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.90 E-value=0.022 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+||+|.+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=0.024 Score=49.24 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=17.5
Q ss_pred EEEECCCCChHHHHHHHHH
Q 010936 85 TALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~ 103 (497)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999884
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.79 E-value=0.012 Score=56.28 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
=+.|.||+|+|||||++.|++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4689999999999999999998865
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.026 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-++++|.+|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.58 E-value=0.049 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.240 Sum_probs=24.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
.|+. ++-.-.|.-+.|.|+||+|||||.-.|.
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3444 3445568899999999999999986665
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.028 Score=47.76 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.49 E-value=0.024 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.028 Score=48.79 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.029 Score=52.64 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=26.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|+.++--| -+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 3555554322 489999999999999999999864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.033 Score=52.48 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.+-.|+-.+|+|++|+|||||+..|+.-
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999998853
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.06 E-value=0.034 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEEEECCCCChHHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~ 103 (497)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999874
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.04 E-value=0.033 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.-+||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999965
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.00 E-value=0.047 Score=50.77 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
+=+++|.++-|.||+|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6789999999999999999999765553
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.033 Score=48.53 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.036 Score=47.89 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.4
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
+.++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.84 E-value=0.034 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.++++|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.74 E-value=0.032 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
=+.++||+|+|||-|.+.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999774
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.61 E-value=0.049 Score=51.91 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44467899999999999999999654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.29 E-value=0.055 Score=48.69 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q 010936 83 TLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G 104 (497)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999963
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.21 E-value=0.046 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-+||+|-+-+|||||+++|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.04 E-value=0.05 Score=48.39 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++|+|..++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999963
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.03 E-value=0.058 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHH---cCCC
Q 010936 84 LTALMGPSGSGKSTLLDALS---SRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~---G~~~ 107 (497)
-+||+|+.|||||||...|. |...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 47999999999999999984 5544
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.88 E-value=0.052 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+.|+|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999988643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.77 E-value=0.069 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
-+||+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.55 E-value=0.054 Score=52.72 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
+++..+.+.||+|+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6778999999999999999999998763
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.21 E-value=0.068 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+.|+|..|+|||||++-+..-.-|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCC
Confidence 689999999999999988644333
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.073 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4788999999999999999986553
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.18 E-value=0.063 Score=50.00 Aligned_cols=20 Identities=55% Similarity=0.760 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~ 103 (497)
-++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.059 Score=48.55 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010936 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988754
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.21 E-value=0.096 Score=49.99 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=23.1
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
....+| ++.+.||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 67778999999999999999764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.19 E-value=0.11 Score=48.31 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+=++.|.++-|.||+|||||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 57899999999999999999998777653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.01 E-value=0.1 Score=48.59 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.3
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
+=++.|.++-|.||+|+|||||+-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHH
Confidence 468899999999999999999964444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.76 E-value=0.1 Score=46.60 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 209 ILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 209 L~~~p~lllLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
.+.+.++|++|+--.= =++..+..+..++..+.+.|+.+|+++..+..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 3557899999987442 35788888999999988889999999988653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.33 E-value=0.14 Score=47.73 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=25.5
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G 104 (497)
.=+.+-.|+..+|+|++|+|||||+..++.
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 335788999999999999999999777753
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.04 E-value=0.11 Score=50.94 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=16.8
Q ss_pred EEEEECCCCChHHHHHHHHH
Q 010936 84 LTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~ 103 (497)
-+.|+|++|||||++++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 47899999999999986443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=0.14 Score=45.31 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
+.+++++||. -.|...++..+++.|.+-. .+..+|++++++.
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChh
Confidence 3679999975 3455666676666665432 2456688888853
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.55 E-value=0.14 Score=46.23 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 213 p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.+++|+||.= .|+..++..+++.|.+.. .+..+|++++++.
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGG
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCcc
Confidence 4699999985 488777777766665421 3567888888754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.53 E-value=0.13 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010936 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~ 105 (497)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.68 E-value=0.17 Score=47.99 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 34467899999999999999998654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.17 Score=46.89 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
-..|+||+|.|||+++.-|+.++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999998765
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=86.06 E-value=0.3 Score=41.48 Aligned_cols=58 Identities=22% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 212 RPRLLFLDEPTSGL--DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 212 ~p~lllLDEPTsgL--D~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.++++|||-...+ .-.+..+++++|++ +.++.-+|+|-+++..++.+++|-|.-|+.
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 46999999998743 44556788888865 345889999999999999999999998863
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.78 E-value=0.2 Score=44.14 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
..|+||+|.|||++..-|+.++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999998665
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.40 E-value=0.17 Score=46.57 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.4
Q ss_pred EEEEECCCCChHHHHH
Q 010936 84 LTALMGPSGSGKSTLL 99 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL 99 (497)
-+.|+|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.01 E-value=0.15 Score=47.37 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.5
Q ss_pred EEEEECCCCChHHHHH
Q 010936 84 LTALMGPSGSGKSTLL 99 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL 99 (497)
-+.|.|+.||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4778999999999765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.18 Score=47.57 Aligned_cols=20 Identities=45% Similarity=0.767 Sum_probs=17.3
Q ss_pred eCCeEEEEECCCCChHHHHH
Q 010936 80 EPGTLTALMGPSGSGKSTLL 99 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL 99 (497)
+.|++..+.|.||+|||||=
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 35789999999999999963
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.25 E-value=0.24 Score=47.89 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010936 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
+.++||+|+|||-|.|.|+...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6677999999999999999765
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.17 E-value=0.19 Score=47.62 Aligned_cols=18 Identities=44% Similarity=0.826 Sum_probs=16.5
Q ss_pred CCeEEEEECCCCChHHHH
Q 010936 81 PGTLTALMGPSGSGKSTL 98 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTL 98 (497)
.|++..+.|.||+|||||
T Consensus 13 ~~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp TCCEEEEEECTTSCHHHH
T ss_pred CCCEEEEEccCCCCcccc
Confidence 478899999999999997
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.23 E-value=0.27 Score=43.88 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=17.6
Q ss_pred EEEECCCCChHHHHHHHHH
Q 010936 85 TALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~ 103 (497)
++|+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999999884
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.70 E-value=0.41 Score=43.98 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+-.++|+|-+-+|||||+|.|.|...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 344589999999999999999999754
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.39 E-value=0.27 Score=46.54 Aligned_cols=19 Identities=47% Similarity=0.784 Sum_probs=17.1
Q ss_pred CCeEEEEECCCCChHHHHH
Q 010936 81 PGTLTALMGPSGSGKSTLL 99 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL 99 (497)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788899999999999985
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=81.24 E-value=0.47 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|=|+-||||||+++.|+..+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 37788999999999999997543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=81.08 E-value=0.48 Score=39.16 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~ 253 (497)
++++++.||-== ++ ..+.+.+..+.+.|++|+++.-+
T Consensus 79 ~~dvI~IDE~QF-f~----d~i~~~~~~~~~~g~~Viv~GLd 115 (139)
T d2b8ta1 79 ETKVIGIDEVQF-FD----DRICEVANILAENGFVVIISGLD 115 (139)
T ss_dssp TCCEEEECSGGG-SC----THHHHHHHHHHHTTCEEEEECCS
T ss_pred CcCEEEechhhh-cc----hhHHHHHHHHHhcCceEEEEEec
Confidence 678999999732 22 13455566666789999999876
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.01 E-value=0.53 Score=44.81 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 4667799999999999999976644
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.73 E-value=0.45 Score=45.76 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.4
Q ss_pred CCeEEEEECCCCChHHHHHH
Q 010936 81 PGTLTALMGPSGSGKSTLLD 100 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~ 100 (497)
.+.++.|.||.|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36699999999999999874
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.68 E-value=0.42 Score=42.70 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHc
Q 010936 85 TALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 85 ~aIlG~nGaGKSTLL~~L~G 104 (497)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.34 E-value=0.18 Score=46.90 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 76 TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 76 s~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
=+.+-+|+..+|+|++|+|||+|+..+.
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred cccccCCceEeeccCCCCChHHHHHHHH
Confidence 3578899999999999999999987554
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.10 E-value=0.22 Score=46.49 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
.=+.+-.|+..+|+|++|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34578899999999999999999976554
|