Citrus Sinensis ID: 010966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIEIRNSRV
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccEEEEcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccEEcccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHcHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHccccEEEEcccccHHHHHHHHHHHccccccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHHHHHHEEcccccccEEEEEcccc
Coil and Loop (DISEMBL)
mmltskpvkgeeahslgLVDAVVAPNQLVSTARQWALDILEHrrpwvatlyktdkieplgEAREIFKFARAQArkqapnlthpiVCIDVVeagvvsgpraglQKEAEDFQKLLRSETCKSLVHIFFAqrgtskvpgvtdlglaprRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGvldyesfkDVDMVIEAIIENVSLKQQIFADLekycpphcilasntstidlnligertyskdrivgahffspahvMPLLEIvrtnqtspQVIVDLLDIGkkikktpivvgnctgfavnrmffpYTQAAFLLVERGTDLYLIDRAItkfgmpmgpfrlADLVGFGVAIATGMQfienfpertyksMIIPIMqedkragettrkgfylyderrkaspdpeVKKFIEKARsmsgvaidpkVLSFFLTGYsklcctgvfpltvlgagikfntkpqIIEIRNSRV
Flexible Loop (DISEMBL)
mmltskpvkgeeahslglvDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQArkqapnltHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFfaqrgtskvpgvtdlglaprRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGrvranlqsrvkkgkmtqekfEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIgkkikktpiVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPimqedkragettrkgfylyderrkaspdpevKKFIEKArsmsgvaiDPKVLSFFLTGYSKLCCTGVFPLTVLgagikfntkpqiieirnsrv
Low Complexity Region (SEG)
MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIEIRNSRV
Disordered region (IsUnstruct)
***************LGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRV******QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQE********RKGFYLY*********************MSGVAIDPKVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIE******
Disordered Region (DISOPRED)
MMLTS**VKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE********************AREIFKFA*********NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT**************RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANL*******************LLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIE************KVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIEIRNS**
Disordered Region (DISEMBL)
*************HSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS*********EKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIEIRNSRV
Disordered Region (DISPRO)
****SKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIEIRNS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSFFLTGYSKLCCTGVFPLTVLGAGIKFNTKPQIIEIRNSRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q9ZPI5	725	Peroxisomal fatty acid be	yes	no	0.921	0.630	0.785	0.0
Q39659	725	Glyoxysomal fatty acid be	N/A	no	0.915	0.626	0.784	0.0
O49809	725	Glyoxysomal fatty acid be	N/A	no	0.915	0.626	0.777	0.0
Q9ZPI6	721	Peroxisomal fatty acid be	no	no	0.903	0.621	0.564	1e-153
Q8W1L6	726	Peroxisomal fatty acid be	no	no	0.893	0.610	0.566	1e-151
A8A2L0	714	Fatty acid oxidation comp	yes	no	0.862	0.599	0.342	1e-60
Q08426	723	Peroxisomal bifunctional	no	no	0.899	0.616	0.322	8e-60
A3CYJ4	716	Fatty acid oxidation comp	yes	no	0.866	0.600	0.342	1e-59
A1RDW6	716	Fatty acid oxidation comp	yes	no	0.866	0.600	0.340	1e-59
A4Y1B6	716	Fatty acid oxidation comp	yes	no	0.866	0.600	0.340	1e-59

>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/457 (78%), Positives = 412/457 (90%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+ + 
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANL 622

Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/454 (78%), Positives = 408/454 (89%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L 
Sbjct: 166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAR+IF  ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct: 226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct: 286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct: 346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER  S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct: 466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVA AT  QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK+
Sbjct: 586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKL 619

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/454 (77%), Positives = 407/454 (89%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+   +++  +T K 
Sbjct: 226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct: 286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA  LVE GTD YLID+A
Sbjct: 466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ++KFGMPMGPFRL DLVGFGVAIAT  QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           YLYD+RRKA PDPE+K +I+KARS+SG   DPK+
Sbjct: 586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKL 619

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1

 Score =  543 bits (1399), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/448 (56%), Positives = 337/448 (75%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+L SK +  EE H LGL+DA+V P  ++ST+R+WALDI E R+P++ +L++TDKI  L 
Sbjct: 163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAR I K +R  A+K APN+     CI+V+E G++ G  +G+ KEAE F++L+ S+T K 
Sbjct: 223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN  V+LKE+N 
Sbjct: 283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL  GI  V AN++S V +GK+TQ+K  K +SL  GVLDY  F DVDMVIEA+IEN+ L
Sbjct: 343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct: 403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L   G DL+ ID  
Sbjct: 463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           IT FG+P+GPF+L DL G G+ +A G  + + + +R ++S +  ++ +  R G+   +G+
Sbjct: 523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGV 448
           Y+Y++  K  PDP V   +EK+R ++ +
Sbjct: 583 YIYEKGSKPKPDPSVLSIVEKSRKLTNI 610

Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2

 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/443 (56%), Positives = 333/443 (75%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MML SK +  +E    GLVDA+ +P++L+  +R WAL+I  +R+PW+ +L +TD++  L 
Sbjct: 163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAR +   AR QA+K A NL     C+DV+E GV+ G  AG+ KEA+ F++L+ S T K+
Sbjct: 223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN  V+LKEVN 
Sbjct: 283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL+ G   + ANL+  VK+G +T++K  K +SLL G LDY  FKDVDMVIEA+IE + L
Sbjct: 343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV  G D++ IDR 
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+ FGMPMGPF+L DL G+GVA+A    +   F  R   S ++ +M ++ R G++  KG+
Sbjct: 523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582

Query: 421 YLYDERRKASPDPEVKKFIEKAR 443
           YLY++  K  PDP V+  I++ R
Sbjct: 583 YLYEKGGKPKPDPSVQVVIDEYR 605

Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 237/450 (52%), Gaps = 22/450 (4%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EP 58
           M+LT K ++ ++A  LGLVD VV P+ ++  A   A+++ +  RP    L   ++I   P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVV-PHSILLEA---AVELAKKDRPSSRPLPVRERILAGP 222

Query: 59  LGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
           LG A       +    K   N       ++VVE G+  G  +G   EA  F +L  +   
Sbjct: 223 LGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQS 282

Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA-TALILSNYPVILKE 177
           ++L  IFFA     K PG +D   AP  +  V ILGGGLMG+GIA      +  PV +K+
Sbjct: 283 QALRSIFFASTDVKKDPG-SDAPPAP--LNSVGILGGGLMGAGIAYVTACKAGLPVRIKD 339

Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
           +N + +   +      L+ +V++  +   + +K ++L++G  DY  F   D++IEA+ EN
Sbjct: 340 INPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFEN 399

Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
           + LKQQ+ A++E+ C  H I ASNTS++ +  I       ++++G HFFSP   MPL+EI
Sbjct: 400 LELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEI 459

Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
           +    TS Q I   + + KK  KTPIVV +  GF VNR+  PY   A  ++  G  +  I
Sbjct: 460 IPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHI 519

Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFI----ENFPER-TYKSMIIPIMQEDKRA 412
           D A+ KFG P+GP +L D VG    I TG + I      + ER +  + ++  +  D R 
Sbjct: 520 DAALVKFGFPVGPIQLLDEVG----IDTGTKIIPVLEAAYGERFSAPANVVSSILNDDRK 575

Query: 413 GETTRKGFYLYDERRKASP---DPEVKKFI 439
           G    +GFYLY ++ + S    DP +   I
Sbjct: 576 GRKNGRGFYLYGQKGRKSKKQVDPAIYPLI 605

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O9:H4 (strain HS) (taxid: 331112)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3

 Score =  231 bits (590), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 240/475 (50%), Gaps = 29/475 (6%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPN---QLVSTARQWALDILEHRRPWVATLYKTDKIE 57
           ++ + + +  +EA  LG++D VV  +   + +  A++ +   LE RR           I+
Sbjct: 151 LITSGRRILADEALKLGILDKVVNSDPVEEAIRFAQRVSDQPLESRR------LCNKPIQ 204

Query: 58  PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
            L     IF  A  + R+Q P       C+  V+A V      G++KE E F  LL+S  
Sbjct: 205 SLPNMDSIFSEALLKMRRQHPGCLAQEACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQ 264

Query: 118 CKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVI 174
            ++L + FFA+R  +K     G +    + R V  V ++G G MG GI  +   +  PVI
Sbjct: 265 ARALQYAFFAERKANKWSTPSGASWKTASARPVSSVGVVGLGTMGRGIVISFARARIPVI 324

Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
             + ++  L      + + L+    K + +   +      LT  +  +    VD+VIEA+
Sbjct: 325 AVDSDKNQLATANKMITSVLEKEASKMQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAV 382

Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
            E +SLK+Q+FA+L   C P   L +NTS +D++ I   T     ++G HFFSPAHVM L
Sbjct: 383 FEEMSLKKQVFAELSAVCKPEAFLCTNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKL 442

Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
           LE++ +  +SP  I  ++++ KKIKK  +VVGNC GF  NRM  PY   A+ L+E G+  
Sbjct: 443 LEVIPSQYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKP 502

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER---TYKSMIIP 404
             +D+ + +FG  MGPFR++DL G  V          TG   +   P R     +   IP
Sbjct: 503 EEVDQVLEEFGFKMGPFRVSDLAGLDVGWKSRKGQGLTGPTLLPGTPARKRGNRRYCPIP 562

Query: 405 -IMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKVLS 456
            ++ E  R G+ T KG+Y YD+   R   PDP + KF+ + R      I+P+ +S
Sbjct: 563 DVLCELGRFGQKTGKGWYQYDKPLGRIHKPDPWLSKFLSRYRKTH--HIEPRTIS 615

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A3CYJ4|FADB_SHEB5 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1

 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
           T K  + E+A  +G VDAVVAP  L + A Q   D +  +  W A   +      L +  
Sbjct: 169 TGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228

Query: 64  EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
            +  F  A+    A    H   P+  + V+E     G    LQ E + F KL +++  K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+ IF   +           G   + V   A+LG G+MG GIA        P+++K++ +
Sbjct: 289 LIGIFLNDQFVKGK--AKKAGKLAKEVNNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             L+ G+      L ++V +G+ T EK  K ++ +T  LDY + K  D+V+EA++E+  +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKI 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           K Q+ A++E Y     I+ASNTSTI +NL+ +     +R  G HFF+P H MPL+EI+R 
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEIIRG 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D   ID+ 
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526

Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
           + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR G+   
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586

Query: 418 KGFYLYDERRKASPDPEV 435
           KGFY+Y    +  P  +V
Sbjct: 587 KGFYVYSVDSRGKPKKDV 604

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A1RDW6|FADB_SHESW Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadB PE=3 SV=1

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
           T    + E+A  +G VDAVVAP  L + A Q   D +  +  W A   +      L +  
Sbjct: 169 TGNDQRAEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228

Query: 64  EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
            +  F  A+    A    H   P+  + V+E     G    LQ E + F KL +++  K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+ IF   +           G   + VK  A+LG G+MG GIA        P+++K++ +
Sbjct: 289 LIGIFLNDQLVKGK--AKKAGKLAKEVKNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             L+ G+      L ++V +G+ T EK  K ++ +T  LDY + K  D+V+EA++E+  +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKI 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           K Q+ A++E Y     I+ASNTSTI +NL+ +     +R  G HFF+P H MPL+E++R 
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRG 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D   ID+ 
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526

Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
           + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR G+   
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586

Query: 418 KGFYLYDERRKASPDPEV 435
           KGFY+Y    +  P  +V
Sbjct: 587 KGFYVYSVDSRGKPKKDV 604

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella sp. (strain W3-18-1) (taxid: 351745)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A4Y1B6|FADB_SHEPC Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadB PE=3 SV=1

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
           T    + E+A  +G VDAVVAP  L + A Q   D +  +  W A   +      L +  
Sbjct: 169 TGNDQRAEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228

Query: 64  EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
            +  F  A+    A    H   P+  + V+E     G    LQ E + F KL +++  K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+ IF   +           G   + VK  A+LG G+MG GIA        P+++K++ +
Sbjct: 289 LIGIFLNDQLVKGK--AKKAGKLAKEVKNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             L+ G+      L ++V +G+ T EK  K ++ +T  LDY + K  D+V+EA++E+  +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKI 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           K Q+ A++E Y     I+ASNTSTI +NL+ +     +R  G HFF+P H MPL+E++R 
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRG 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D   ID+ 
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526

Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
           + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR G+   
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586

Query: 418 KGFYLYDERRKASPDPEV 435
           KGFY+Y    +  P  +V
Sbjct: 587 KGFYVYSVDSRGKPKKDV 604

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
224107106	726	predicted protein [Populus trichocarpa]	0.915	0.625	0.848	0.0
225431755	724	PREDICTED: glyoxysomal fatty acid beta-o	0.921	0.631	0.857	0.0
296083347	765	unnamed protein product [Vitis vinifera]	0.921	0.597	0.857	0.0
356521845	724	PREDICTED: glyoxysomal fatty acid beta-o	0.915	0.627	0.837	0.0
224130412	726	predicted protein [Populus trichocarpa]	0.915	0.625	0.843	0.0
351723429	723	peroxisomal fatty acid beta-oxidation mu	0.915	0.627	0.830	0.0
357478819	724	Glyoxysomal fatty acid beta-oxidation mu	0.921	0.631	0.814	0.0
171854673	725	putative glyoxysomal fatty acid beta-oxi	0.915	0.626	0.823	0.0
356564184	722	PREDICTED: peroxisomal fatty acid beta-o	0.921	0.632	0.803	0.0
297829230	723	hypothetical protein ARALYDRAFT_478006 [	0.921	0.632	0.787	0.0

>gi|224107106|ref|XP_002314377.1| predicted protein [Populus trichocarpa] gi|222863417|gb|EEF00548.1| predicted protein [Populus trichocarpa]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/454 (84%), Positives = 428/454 (94%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDILE RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDILERRRPWIASLYKTEKLDSLG 226

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREIFKFAR Q RK+APNLTHPIVCIDV+E G+VSGPR GL KE E F +L+RS+TCKS
Sbjct: 227 EAREIFKFAREQVRKRAPNLTHPIVCIDVIEHGIVSGPRDGLYKELESFHELVRSDTCKS 286

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+HIFFAQRGT+KVPG+TDLGL PRRVKKVA+LGGGLMGSGIATAL+LSNYPVILKEVN 
Sbjct: 287 LIHIFFAQRGTTKVPGITDLGLVPRRVKKVAVLGGGLMGSGIATALVLSNYPVILKEVNN 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL+AGIGRVRANLQSRVKKG+MTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGRMTQEKFEKTMSLLKGALDYESFKDVDMVIEAVIENVSL 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LLVE G DLY ID+ 
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAALLLVEHGADLYQIDKV 526

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 527 ITKFGMPMGPFRLVDLVGFGVAIATGTQFVVNFPERTYKSMLIPLMQEDKRAGETTRKGF 586

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           YLYD+RRKA PDPE++K+IEKAR++SGVA DPK+
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARNISGVANDPKL 620

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431755|ref|XP_002270067.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Vitis vinifera]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/457 (85%), Positives = 425/457 (92%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 165 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 224

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 225 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 284

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 285 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 344

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 345 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 404

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 405 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 464

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 465 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 524

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 525 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 584

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK++  
Sbjct: 585 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMKL 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083347|emb|CBI22983.3| unnamed protein product [Vitis vinifera]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/457 (85%), Positives = 425/457 (92%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 206 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 265

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 266 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 325

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 326 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 385

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 386 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 445

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 446 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 505

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 506 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 565

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 566 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 625

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK++  
Sbjct: 626 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMKL 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521845|ref|XP_003529561.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Glycine max]

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/454 (83%), Positives = 428/454 (94%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVD+VIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDLVIEAVIENISL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKSQDRIVGAHFFSPAHVMPLLEIVRT 463

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTSPQVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA  LLVERG D+Y IDR 
Sbjct: 464 KQTSPQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRI 523

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRLADLVGFGVAIATG QFI+NFPERTYKSM+IP++QED RAGETTRKGF
Sbjct: 524 ITKFGMPMGPFRLADLVGFGVAIATGTQFIQNFPERTYKSMLIPLLQEDNRAGETTRKGF 583

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           YLYD++RKASPDPE+K +IEKARS+SGV++DPK+
Sbjct: 584 YLYDDKRKASPDPELKNYIEKARSISGVSVDPKL 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130412|ref|XP_002328602.1| predicted protein [Populus trichocarpa] gi|222838584|gb|EEE76949.1| predicted protein [Populus trichocarpa]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/454 (84%), Positives = 426/454 (93%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDI E RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDIFECRRPWIASLYKTEKLDSLG 226

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREIFKFARAQA+K+APNL HPIVCI+VVE G+VSGPRAGL KE E FQ+L+RS+  KS
Sbjct: 227 EAREIFKFARAQAQKRAPNLLHPIVCINVVEHGIVSGPRAGLYKEFESFQELVRSDISKS 286

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVHIFFA  GT+KVPG+TDLG  PR VKKVA+LGGGLMGSGIATALILSNYPVILKEVN+
Sbjct: 287 LVHIFFALHGTTKVPGITDLGFVPRLVKKVAVLGGGLMGSGIATALILSNYPVILKEVND 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL+AGIGRVRANLQSRVKKGKMTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGKMTQEKFEKTMSLLKGSLDYESFKDVDMVIEAVIENVSL 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA  LVE G DLY IDR 
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAIFLVEHGVDLYQIDRV 526

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRLADLVGFGVAIATGMQF+ENFPERTYKSM++P+MQEDKR GETT KGF
Sbjct: 527 ISKFGMPMGPFRLADLVGFGVAIATGMQFVENFPERTYKSMLLPLMQEDKRGGETTCKGF 586

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           YLYD+RRKA PDPE++K+IEKARS+SGVA+DPK+
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARSISGVAVDPKL 620

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723429|ref|NP_001234975.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max] gi|167962162|dbj|BAG09370.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max]

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/454 (83%), Positives = 426/454 (93%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDMVIEAVIENISL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T ++DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKTQDRIVGAHFFSPAHVMPLLEIVRT 463

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTS QVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA  LLVERG D+Y IDR 
Sbjct: 464 KQTSAQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRV 523

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+I ++QEDKRAGETT KGF
Sbjct: 524 ITKFGMPMGPFRLMDLVGFGVAIATGMQFIQNFPERTYKSMLISLLQEDKRAGETTHKGF 583

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           YLY+++RKASPDPE+K +IEKARS+SGV++DPK+
Sbjct: 584 YLYNDKRKASPDPELKNYIEKARSISGVSVDPKL 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478819|ref|XP_003609695.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula] gi|355510750|gb|AES91892.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/458 (81%), Positives = 422/458 (92%), Gaps = 1/458 (0%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKG++A S GLVD +V+P+QLV+TARQWALDIL+ RRPW+A+LYKT+KIEPLG
Sbjct: 164 MMLTSKPVKGKDAFSSGLVDGLVSPDQLVNTARQWALDILDRRRPWIASLYKTEKIEPLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQARKQAPNL HP+VCIDV+EAG+VSGPRAGL KEAE F  L++S+TCKS
Sbjct: 224 EAREILKFARAQARKQAPNLKHPLVCIDVIEAGIVSGPRAGLWKEAEAFDALVQSDTCKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+HIFFAQRGTSKVPGVTD GL PR VKKVAILGGGLMGSGIATALILSNY VILKEVNE
Sbjct: 284 LIHIFFAQRGTSKVPGVTDRGLVPRPVKKVAILGGGLMGSGIATALILSNYSVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI R++ANLQSRVKKG +TQE+FEK  SL+ G LDY+SF+DVDMVIEA+IENVSL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGNLTQERFEKAFSLVKGSLDYDSFRDVDMVIEAVIENVSL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF-SPAHVMPLLEIVR 299
           KQQIFADLEKYCPPHCIL SNTSTIDL+LIGE+T S+DRI+GAHFF  PAHVMPLLEIVR
Sbjct: 404 KQQIFADLEKYCPPHCILGSNTSTIDLDLIGEKTKSQDRIIGAHFFRCPAHVMPLLEIVR 463

Query: 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
           T +TSPQVIVDLLDI KKIKKTP+VVGNCTGFAVNR+FFPYTQA  LLVERG D+Y ID+
Sbjct: 464 TKRTSPQVIVDLLDISKKIKKTPVVVGNCTGFAVNRVFFPYTQATLLLVERGADVYQIDK 523

Query: 360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKG 419
           A+TKFGMPMGP RL DLVGFGVA+ATG QF++NFPERTYKSM+IP++QEDKRAGETTRKG
Sbjct: 524 AVTKFGMPMGPLRLCDLVGFGVAVATGSQFVQNFPERTYKSMLIPLLQEDKRAGETTRKG 583

Query: 420 FYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           FYLYD+RRKASPDPE+KKFIEKARS+SGV++DP ++  
Sbjct: 584 FYLYDDRRKASPDPELKKFIEKARSISGVSVDPMLVKL 621

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171854673|dbj|BAG16526.1| putative glyoxysomal fatty acid beta-oxidation multifunctional protein [Capsicum chinense]

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/454 (82%), Positives = 417/454 (91%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVKGEEA +LGLVDAVV  NQL+ TAR+WALDILE R+PWVA+L+KTDKIEPLG
Sbjct: 166 MILTSKPVKGEEAVNLGLVDAVVPSNQLLGTARKWALDILECRKPWVASLHKTDKIEPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREIFKFAR Q RKQAPNL H +V IDV+E G+VSGP AGL KEAE FQ LL S+TCK+
Sbjct: 226 EAREIFKFARVQTRKQAPNLQHLLVVIDVIEEGIVSGPLAGLWKEAEAFQALLHSDTCKA 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LV++FFAQR T+KVPGVTDLGL PRR+KKVAILGGGLMGSGIATAL+ S YPVILKEVN+
Sbjct: 286 LVNVFFAQRATTKVPGVTDLGLKPRRIKKVAILGGGLMGSGIATALLRSGYPVILKEVND 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AG+GRV+ANLQS VKKGKM+QEKFEKT+SLL G LDYE F+DVDMVIEA+IENVSL
Sbjct: 346 KFLQAGLGRVKANLQSSVKKGKMSQEKFEKTLSLLKGALDYEGFRDVDMVIEAVIENVSL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQ+FADLEKYCP HCILASNTSTIDLNLIGE+T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQVFADLEKYCPSHCILASNTSTIDLNLIGEKTKSQDRIIGAHFFSPAHVMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQ+IVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LLVERG D++ IDR 
Sbjct: 466 QKTSPQIIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAALLLVERGADVFRIDRI 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 526 ITKFGMPMGPFRLCDLVGFGVAIATGGQFVMNFPERTYKSMLIPLMQEDKRAGETTRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
           Y+YD+RRKASPDPE+KK+IEKAR MSGV ID K+
Sbjct: 586 YVYDDRRKASPDPEIKKYIEKAREMSGVTIDHKM 619

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564184|ref|XP_003550336.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Glycine max]

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/457 (80%), Positives = 416/457 (91%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKG+EA SLGLVD +++P+ LV+TA QWALDI+  RRPW+A+LYKTDK+EPLG
Sbjct: 163 MMLTSKPVKGKEAFSLGLVDGLMSPDDLVNTACQWALDIMGRRRPWIASLYKTDKLEPLG 222

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQ +K+APNL HP+VCIDV+EAGVV+GPRAGL KE E  + L++S+T KS
Sbjct: 223 EAREILKFARAQVQKRAPNLQHPLVCIDVIEAGVVAGPRAGLWKEVEASEGLIKSDTSKS 282

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGTSKVPGVTD GL PR VKKVAI+GGGLMGSGIATALILS+YP+ILKEVNE
Sbjct: 283 LIHVFFSQRGTSKVPGVTDCGLVPRHVKKVAIIGGGLMGSGIATALILSSYPIILKEVNE 342

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGI R++ANLQSRVKKGK+TQE FE T+SLL G LDYESFKDVDMVIEA++ENVSL
Sbjct: 343 KFLEAGINRIKANLQSRVKKGKLTQENFENTVSLLKGTLDYESFKDVDMVIEAVVENVSL 402

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCPPHCILASNTSTIDLNLIGERT S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 403 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTKSQDRIVGAHFFSPAHVMPLLEIVRT 462

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTS QV+VD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA   LVE G D+Y IDR 
Sbjct: 463 KQTSAQVVVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLFLVEHGADVYQIDRV 522

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+IP++QEDKRAGETTRKGF
Sbjct: 523 ITKFGMPMGPFRLVDLVGFGVAIATGMQFIQNFPERTYKSMLIPLLQEDKRAGETTRKGF 582

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           YLYD++ K SPDPE+K +IEKARS +GV++DPK++  
Sbjct: 583 YLYDDKCKPSPDPELKNYIEKARSFTGVSVDPKLVKL 619

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829230|ref|XP_002882497.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata] gi|297328337|gb|EFH58756.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata]

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/457 (78%), Positives = 415/457 (90%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAV+ P +L++TAR+WALDI+E R+PWV+++ KTDK+  LG
Sbjct: 164 MILTSKPVKAEEGHSLGLIDAVMPPAELLTTARRWALDIVERRKPWVSSVSKTDKLPSLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFAR Q +K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T KS
Sbjct: 224 EAREILKFARGQTQKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GLAPR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LIHVFFSQRGTAKVPGVTDRGLAPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 404 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 463

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 464 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 523

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 524 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 583

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+ + 
Sbjct: 584 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANL 620

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2077542	725	MFP2 "multifunctional protein	0.915	0.626	0.790	6.1e-197
UNIPROTKB|O49809	725	O49809 "Glyoxysomal fatty acid	0.915	0.626	0.777	1.8e-196
UNIPROTKB|Q39659	725	Q39659 "Glyoxysomal fatty acid	0.915	0.626	0.784	2.4e-195
TAIR|locus:2119891	721	AIM1 "ABNORMAL INFLORESCENCE M	0.919	0.632	0.559	1.9e-138
UNIPROTKB|Q8W1L6	726	MFP "Peroxisomal fatty acid be	0.893	0.610	0.566	1.4e-135
TIGR_CMR|SPO_0772	698	SPO_0772 "enoyl-CoA hydratase/	0.891	0.633	0.358	5.8e-66
TIGR_CMR|SO_0021	716	SO_0021 "fatty oxidation compl	0.856	0.593	0.347	2.6e-63
UNIPROTKB|Q48GW3	721	fadB "Fatty acid oxidation com	0.864	0.595	0.328	4.2e-63
TIGR_CMR|SO_3088	707	SO_3088 "fatty oxidation compl	0.854	0.599	0.356	1.3e-61
UNIPROTKB|P28793	715	fadB "Fatty acid oxidation com	0.842	0.584	0.347	1.5e-60

TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
 Identities = 359/454 (79%), Positives = 411/454 (90%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct:   166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct:   226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct:   286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct:   346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct:   406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct:   466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct:   526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
             YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+
Sbjct:   586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKL 619

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IEP;RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)]

 Score = 1885 (668.6 bits), Expect = 1.8e-196, Sum P(2) = 1.8e-196
 Identities = 353/454 (77%), Positives = 407/454 (89%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct:   166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+   +++  +T K 
Sbjct:   226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct:   286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct:   346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct:   406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA  LVE GTD YLID+A
Sbjct:   466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             ++KFGMPMGPFRL DLVGFGVAIAT  QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct:   526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
             YLYD+RRKA PDPE+K +I+KARS+SG   DPK+
Sbjct:   586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKL 619

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=ISS

UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)]

 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 356/454 (78%), Positives = 408/454 (89%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L 
Sbjct:   166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAR+IF  ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct:   226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct:   286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct:   346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER  S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct:   406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
               T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct:   466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             I+KFGMPMGPFRL DLVGFGVA AT  QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct:   526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
             Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK+
Sbjct:   586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKL 619

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IDA

GO:0009514 "glyoxysome" evidence=NAS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
 Identities = 255/456 (55%), Positives = 340/456 (74%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             M+L SK +  EE H LGL+DA+V P  ++ST+R+WALDI E R+P++ +L++TDKI  L 
Sbjct:   163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAR I K +R  A+K APN+     CI+V+E G++ G  +G+ KEAE F++L+ S+T K 
Sbjct:   223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN  V+LKE+N 
Sbjct:   283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             +FL  GI  V AN++S V +GK+TQ+K  K +SL  GVLDY  F DVDMVIEA+IEN+ L
Sbjct:   343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct:   403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
               TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L   G DL+ ID  
Sbjct:   463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             IT FG+P+GPF+L DL G G+ +A G  + + + +R ++S +  ++ +  R G+   +G+
Sbjct:   523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLS 456
             Y+Y++  K  PDP V   +EK+R ++ +    K +S
Sbjct:   583 YIYEKGSKPKPDPSVLSIVEKSRKLTNIMPGGKPIS 618

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 251/443 (56%), Positives = 333/443 (75%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             MML SK +  +E    GLVDA+ +P++L+  +R WAL+I  +R+PW+ +L +TD++  L 
Sbjct:   163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAR +   AR QA+K A NL     C+DV+E GV+ G  AG+ KEA+ F++L+ S T K+
Sbjct:   223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN  V+LKEVN 
Sbjct:   283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             +FL+ G   + ANL+  VK+G +T++K  K +SLL G LDY  FKDVDMVIEA+IE + L
Sbjct:   343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct:   403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
              +TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV  G D++ IDR 
Sbjct:   463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             I+ FGMPMGPF+L DL G+GVA+A    +   F  R   S ++ +M ++ R G++  KG+
Sbjct:   523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582

Query:   421 YLYDERRKASPDPEVKKFIEKAR 443
             YLY++  K  PDP V+  I++ R
Sbjct:   583 YLYEKGGKPKPDPSVQVVIDEYR 605

GO:0003729 "mRNA binding" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=NAS

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 166/463 (35%), Positives = 246/463 (53%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVA--PNQL-VSTARQWALDILEHRRPWVATLYKTDKIE 57
             M+ T + V+ +EA  LG++D V    P ++ +S  R+  LD    RRP V  +       
Sbjct:   151 MITTGRHVRADEALRLGVIDRVAEGEPREIGLSYLRE-LLDEGAPRRP-VGEM------- 201

Query:    58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGP-RAGLQKEAEDFQKLLRSE 116
             P     +      A  RK    L+ P   +  V+A   +    AGL++E E F +L+ S+
Sbjct:   202 PAPAPVDFDAIYAAVLRKGRGQLS-PATAVRAVQAACEAESFAAGLKRERELFMELMNSD 260

Query:   117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
               + L+H FFA R   K+P +   G+APR +  + ++GGG MG+GIATA +LS   V + 
Sbjct:   261 QREGLIHAFFADRAVGKLPELE--GVAPRPLAAIGVIGGGTMGAGIATAALLSGLSVTML 318

Query:   177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK-TISLLTGVLDYESFKDVDMVIEAII 235
             E+  +  EA  GR+  NL   +K+GK+T ++F+  T   LT  +DY++  D D+VIEA+ 
Sbjct:   319 EMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNLTTKALTLAIDYDALADADLVIEAVF 378

Query:   236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
             E++ +K+Q+F  L+  C P  +LASNTS +D+N I   T     ++G HFFSPAHVM LL
Sbjct:   379 EDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQIAAVTSRPQDVLGLHFFSPAHVMKLL 438

Query:   296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
             E+V  +QT+P V      +GK++ K  +  G C GF  NR+   Y   A  ++  G   Y
Sbjct:   439 EVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDGFIGNRILSVYRTCADHMILDGASPY 498

Query:   356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF-IENFPERTYKSMIIPIMQEDKRAGE 414
              ID A+ +FG  MGPF +ADL G  +  A   +   E    R   S     + E    G+
Sbjct:   499 QIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKRAEGLDPRARDSAYADKLCEAGHFGQ 558

Query:   415 TTRKGFYLYDERRKAS-PDPEVKKFIEKARSMSGVAIDPKVLS 456
              T KG+Y Y    KA  P+PEV   IE  R+  G+   P+  S
Sbjct:   559 KTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGIT--PRAFS 599

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SO_0021 SO_0021 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 154/443 (34%), Positives = 230/443 (51%)

Query:     4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
             T    + E+A  +G VDAVVAP  L   A Q   D +  +  W A   +  K+ PL    
Sbjct:   169 TGNEQRAEDALKVGAVDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQR--KLSPLTLPK 226

Query:    61 -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
              EA   F  A+      A  +   P+  ++VVE     G    LQ E + F KL +++  
Sbjct:   227 LEAMMSFTTAKGMVFSVAGKHYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVA 286

Query:   119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
             K+L+ IF      +G +K  G     LA + V   A+LG G+MG GIA        P+++
Sbjct:   287 KALIGIFLNDQFVKGKAKKAGK----LA-KAVNSAAVLGAGIMGGGIAYQSASKGTPIVM 341

Query:   176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
             K++ +  L+ G+      L ++V +G+ T EK  K ++ +T  L+Y   K  D+V+EA++
Sbjct:   342 KDIAQPALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVV 401

Query:   236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
             E+  +K Q+ A++E+Y     I+ASNTSTI ++L+ +     +R  G HFF+P H MPL+
Sbjct:   402 EHPKVKAQVLAEVEQYVSEDAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLV 461

Query:   296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
             E++R   +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D  
Sbjct:   462 EVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFA 521

Query:   356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
              ID+ + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR 
Sbjct:   522 AIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRL 581

Query:   413 GETTRKGFYLYDERRKASPDPEV 435
             G+   KGFY Y    +  P  +V
Sbjct:   582 GQKNGKGFYAYSVDSRGKPKKDV 604

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

UNIPROTKB|Q48GW3 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 145/442 (32%), Positives = 230/442 (52%)

Query:     4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLY-KTDKIEPLGEA 62
             + K    E+A  +G VDAVVAP +L + A       +     + A    K DK++ L   
Sbjct:   170 SGKESSAEDALKVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQPKLDKLK-LNAI 228

Query:    63 REIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCK 119
              ++  F  A+   A +  PN   P+  I  ++     G    L+ EA  F K+ ++   +
Sbjct:   229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMAKTSAAQ 288

Query:   120 SLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVN 179
             SL+ +F   +   K     D     + VK+ A+LG G+MG GIA    +   P+++K++ 
Sbjct:   289 SLIGLFLNDQELKKKAKGYDA--VAKDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIR 346

Query:   180 EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239
             E+ ++ G+      L  R++KG++T  K  + ++ +   L Y  F +VD+V+EA++EN  
Sbjct:   347 EEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPK 406

Query:   240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVR 299
             +KQ + A++E     H ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+E++R
Sbjct:   407 VKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466

Query:   300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
               ++S + +   +   +K+ K PIVV +C GF VNR+ FPY      LV  G D   ID+
Sbjct:   467 GEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDK 526

Query:   360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTR 417
              + KFG PMGP  L D+VG            E FP+R    +  ++  + E KR G+   
Sbjct:   527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKRLGQKNG 586

Query:   418 KGFYLYDERRKASP----DPEV 435
             KGFY Y+  +K  P    DP V
Sbjct:   587 KGFYAYETDKKGKPKKVNDPAV 608

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SO_3088 SO_3088 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 154/432 (35%), Positives = 226/432 (52%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             MMLT K ++ ++A  +GLV+ VV    L+ TA + AL   +  +P   +L     +E  G
Sbjct:   167 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSLVN-QLLEGTG 225

Query:    61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
               R I   + A+  A+K   N   P   ID V  G+  G + GL+ EA  F +L+ S+  
Sbjct:   226 FGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKES 285

Query:   119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
             ++L  IFFA     K  G    G  PR+VKK  ILGGGLMG GIA+     +  P  +K+
Sbjct:   286 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 343

Query:   178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
             +NEK L   +      L   VK+  MT    +  ++L+T   +Y+  KD D+V+EA+ E+
Sbjct:   344 INEKGLSNALSYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFED 403

Query:   238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
             ++LK Q+  D+E+ C  H I ASNTS++ +  I +     + ++G H+FSP   MPL+E+
Sbjct:   404 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 463

Query:   298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYL 356
             +   +TSP+ I   +   +K  KTPIVV +  GF VNR+   Y  +AA LL+E G  +  
Sbjct:   464 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLE-GQSVEH 522

Query:   357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
             +D+A+ KFG P+GP  L D VG  V         +   ER         +  D R G   
Sbjct:   523 LDKALVKFGFPVGPITLLDEVGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKN 582

Query:   417 RKGFYLYDERRK 428
              KGFY Y    K
Sbjct:   583 GKGFYQYGAASK 594

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

UNIPROTKB|P28793 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas fragi (taxid:296)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 151/435 (34%), Positives = 224/435 (51%)

Query:     4 TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
             + K  + E+A  +  VDAVV  ++L       +  A    LD    R+P +  L K + I
Sbjct:   170 SGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL-KLNAI 228

Query:    57 EPLGEAREIFK-FARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
             E +  A E  K F   QA    PN   P+  I  ++     G    L+ EA  F KL ++
Sbjct:   229 EQM-MAFETAKGFVAGQA---GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284

Query:   116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
                  L+ +F   +   K   V D  +A + VK+ A+LG G+MG GIA        P+++
Sbjct:   285 SASNCLIGLFLNDQELKKKAKVYDK-IA-KDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342

Query:   176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
             K++NE  +E G+      L  RV KG+MT  K  + ++ +   L Y  F +VD+V+EA++
Sbjct:   343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402

Query:   236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
             EN  +KQ + A++E +     ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+
Sbjct:   403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462

Query:   296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
             E++R  ++S   +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G D  
Sbjct:   463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522

Query:   356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAG 413
              ID+ + KFG PMGP  L D+VG            E FP+R    +   I  + E KR G
Sbjct:   523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582

Query:   414 ETTRKGFYLYDERRK 428
             +   KGFY Y+  +K
Sbjct:   583 QKNGKGFYAYEADKK 597

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49809	MFPA_BRANA	1, ., 1, ., 1, ., 3, 5	0.7775	0.9153	0.6262	N/A	no
Q39659	MFPA_CUCSA	1, ., 1, ., 1, ., 3, 5	0.7841	0.9153	0.6262	N/A	no
Q9ZPI5	MFP2_ARATH	1, ., 1, ., 1, ., 3, 5	0.7855	0.9213	0.6303	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
3rd Layer	5.1.2.3	0.914
3rd Layer	1.1.1.35	0.914
3rd Layer	5.1.2	0.921
3rd Layer	4.2.1	0.921
4th Layer	4.2.1.17	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X3923	hypothetical protein (726 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•	•		0.908
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•	•		0.908
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•	•		0.907
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•	•		0.906
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•	•		0.903
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•	•		0.903
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•	•		0.902
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	eugene3.07970004	Predicted protein (395 aa)	•					•	•		0.499
	fgenesh4_pg.C_scaffold_17829000001	Predicted protein (327 aa)	•					•	•		0.492

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	7e-98
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	6e-97
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	6e-94
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	6e-85
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	2e-81
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	6e-75
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-73
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	2e-70
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	1e-61
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	4e-55
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	2e-52
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	3e-52
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	1e-50
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-47
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	3e-47
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	7e-43
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	2e-37
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	9e-23
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	4e-21
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	6e-21
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	8e-14
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	6e-08
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	1e-07
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	3e-05
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	2e-04
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	3e-04
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	5e-04
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	8e-04
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	0.001
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	0.002
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	0.004

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  309 bits (795), Expect = 7e-98
 Identities = 161/461 (34%), Positives = 235/461 (50%), Gaps = 52/461 (11%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL-DILEHRR-PWVATLYKTDKIEP 58
           M+LT K ++ ++A  LGLVD VV  + L+  A + A       R  P    L + +   P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGN---P 223

Query: 59  LGEAREIFKFARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
           LG A  +FK AR +   +   N   P   +DVV  G+  G  +G + EA  F +L  +  
Sbjct: 224 LGRAL-LFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPE 282

Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA--TALILSNYPVIL 175
             +L  IFFA     K  G       PR V KV +LGGGLMG GIA  TA   +  PV +
Sbjct: 283 SAALRSIFFATTEMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTA-TKAGLPVRI 338

Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
           K++N + +   +      L  +VK+  +   + +K ++L++G  DY  FK  D+VIEA+ 
Sbjct: 339 KDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVF 398

Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
           E+++LKQQ+ A++E+ C PH I ASNTS++ +  I       ++++G H+FSP   MPL+
Sbjct: 399 EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLV 458

Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDL 354
           E++   +TS + I   + + KK  KTPIVV +  GF VNR+  PY  +AA LL+E G  +
Sbjct: 459 EVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPI 517

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQE------ 408
             ID A+ KFG P+GP  L D VG  V                  + IIPI++       
Sbjct: 518 EHIDAALVKFGFPVGPITLLDEVGIDVG-----------------TKIIPILEAALGERF 560

Query: 409 -----------DKRAGETTRKGFYLYDERRKAS---PDPEV 435
                      D R G    +GFYLY ++ K S    D  V
Sbjct: 561 SAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESV 601

Length = 708

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  307 bits (789), Expect = 6e-97
 Identities = 160/451 (35%), Positives = 236/451 (52%), Gaps = 30/451 (6%)

Query: 2   MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG- 60
           +   K V+ E+A  +G VDAVVAP +L   A       +  +  W A   +  K+EPL  
Sbjct: 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKA--RRQPKLEPLKL 224

Query: 61  ---EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
              EA   F  A+    ++A  +   P+  +  +EA    G    L+ EA+ F KL ++ 
Sbjct: 225 SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTN 284

Query: 117 TCKSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
             ++LV IF      +G +K      L    + VK+ A+LG G+MG GIA        PV
Sbjct: 285 VARALVGIFLNDQYVKGKAK-----KLAKDAKPVKQAAVLGAGIMGGGIAYQSASKGVPV 339

Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
           I+K++N+K L+ G+      L  +V++GK+   K    +S +   LDY  F+ VD+V+EA
Sbjct: 340 IMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEA 399

Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
           ++EN  +K  + A++E+      ILASNTSTI ++L+ +     +   G HFF+P H MP
Sbjct: 400 VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459

Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
           L+E++R  +TS + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D
Sbjct: 460 LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAD 519

Query: 354 LYLIDRAITK-FGMPMGPFRLADLVGFGVAIATG------MQFIENFPERTYKSM--IIP 404
              ID+ + K FG PMGP  L D+VG    I T       M   E FP+R  K     I 
Sbjct: 520 FRQIDKVMEKQFGWPMGPAYLLDVVG----IDTAHHAQAVMA--EGFPDRMKKDYRDAID 573

Query: 405 IMQEDKRAGETTRKGFYLYDERRKASPDPEV 435
           ++ E KR G+   KGFY Y+E +K  P  EV
Sbjct: 574 VLFEAKRFGQKNGKGFYRYEEDKKGKPKKEV 604

Length = 715

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  287 bits (736), Expect = 6e-94
 Identities = 107/284 (37%), Positives = 168/284 (59%), Gaps = 4/284 (1%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +KKVA++G G+MG+GIA    L+ Y V+LK+++ + LE  +  +  NL+  V+KGK+T+E
Sbjct: 3   IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
           + +  ++ +T   D  + KD D+VIEA++E++ LK+Q+FA+LE    P  ILASNTS++ 
Sbjct: 63  EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  + E     +R +G HFF+P  +MPL+E++R  +TS + +  +++  KKI KTP+VV 
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182

Query: 327 NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384
           +  GF VNR+       A  L+E G      ID A+    G+PMGPF LADL+G  V + 
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242

Query: 385 TGMQFIENFPERTYKSM--IIPIMQEDKRAGETTRKGFYLYDER 426
                 E   +  Y     ++  + E  R G  + KGFY Y   
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGE 286

Length = 307

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  275 bits (706), Expect = 6e-85
 Identities = 147/443 (33%), Positives = 230/443 (51%), Gaps = 18/443 (4%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
           + K  + E+A  +G VDAVV  ++L + A Q   D +  +  W A   +  K+EPL    
Sbjct: 169 SGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSK 226

Query: 61  -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
            EA   F  A+    + A P+   P+  +  +E     G    L+ EA+ F KL ++   
Sbjct: 227 IEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEA 286

Query: 119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
           K+L+ +F      +G +K           + VK+ A+LG G+MG GIA        P+++
Sbjct: 287 KALIGLFLNDQYVKGKAKK-----ADKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPIVM 341

Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
           K++N+  L+ G+      L  +V++G++T  K    ++ +T  L Y  F +VD+V+EA++
Sbjct: 342 KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401

Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
           EN  +K  + A++E++     ILASNTSTI ++L+ +     +   G HFF+P H MPL+
Sbjct: 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLV 461

Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
           E++R  ++S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D  
Sbjct: 462 EVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFV 521

Query: 356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
            ID+ + K FG PMGP  L D+VG            E FP+R  K     I  + E KR 
Sbjct: 522 RIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRL 581

Query: 413 GETTRKGFYLYDERRKASPDPEV 435
           G+   KGFY Y+  +K  P   V
Sbjct: 582 GQKNGKGFYAYEADKKGKPKKLV 604

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  266 bits (682), Expect = 2e-81
 Identities = 159/444 (35%), Positives = 225/444 (50%), Gaps = 12/444 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP--WVATLYKTDKIEP 58
           M+LT K ++ ++A  LGLVD VV  + L+ TA + AL     R+P      L +     P
Sbjct: 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGT---P 218

Query: 59  LGEAREIFKFARAQ-ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
           LG A  +F  A  + A+K   N       +DVV  G+  G + GL  EA  F +L+ +  
Sbjct: 219 LGRAL-LFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPE 277

Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILK 176
             +L  IFFA     K  G       P ++KKV ILGGGLMG GIA+     +  PV +K
Sbjct: 278 SAALRSIFFATTEMKKETGSDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIK 334

Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
           ++N + +   +      L   VK+  MT  + +  ++L+TG  DY  FKDVD+VIEA+ E
Sbjct: 335 DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394

Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
           +++LK Q+  D+E+ C  H I ASNTS++ +  I       + ++G H+FSP   MPL+E
Sbjct: 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVE 454

Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
           ++    TS Q I   + + KK  KTPIVV +  GF VNR+  PY   A  L+  G  +  
Sbjct: 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEH 514

Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
           ID+A+ KFG P+GP  L D VG  V             ER     +   +  D R G   
Sbjct: 515 IDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKN 574

Query: 417 RKGFYLYDERRKASP-DPEVKKFI 439
            KGFYLY    K    D  V   +
Sbjct: 575 GKGFYLYGAATKKKAVDESVYGLL 598

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  233 bits (597), Expect = 6e-75
 Identities = 69/180 (38%), Positives = 115/180 (63%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
           KVA++G G MG+GIA     +   V+L +++E+ LE    R+  +L   V+KG++T+E  
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
           +  ++ ++   D     D D+VIEA+ EN+ LK+++FA+L+   PP  ILASNTS++ + 
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
            +   T   +R +G HFF+P  +MPL+E+VR  +TSP+ +  ++ + KKI KTP+VV + 
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  245 bits (628), Expect = 2e-73
 Identities = 144/454 (31%), Positives = 221/454 (48%), Gaps = 27/454 (5%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPL 59
           MMLT K ++ + A  +G+VD +V P    +  A +  ++ LE      A      K+   
Sbjct: 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSIN 233

Query: 60  GEA-----------------REIFKFARAQARKQAPNL-THPIVCIDVVEAGVVSGPRAG 101
            +                  ++++K A  +  KQ   L   P+  +DVV  G   GP AG
Sbjct: 234 RDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAG 293

Query: 102 LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG 161
            + E++ F +L  +   K+L+ +F  Q    K       G   R VK +A+LG GLMG+G
Sbjct: 294 YEAESKAFGELSMTFESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAG 349

Query: 162 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221
           IA   +      +LK+     L+ G  +V   L  +VK+ K+T  + +  +S LT  LDY
Sbjct: 350 IAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409

Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIV 281
             FK+ DMVIEA+ E++SLK ++  ++E   PPHCI+ASNTS + +  I   +   ++++
Sbjct: 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVI 469

Query: 282 GAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYT 341
           G H+FSP   M LLEI+  + TS   +   + +G K  K  IVV +  GF   R   P  
Sbjct: 470 GMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPML 529

Query: 342 QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM 401
                L++ G D   +D+  TKFG P+G   LAD VG  VA        + F ER +   
Sbjct: 530 AEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGER-FGGG 588

Query: 402 IIPIMQEDKRAGETTR---KGFYLYDERRKASPD 432
              ++ E  +AG   R   KG ++Y E +K S  
Sbjct: 589 SAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKK 622

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  225 bits (576), Expect = 2e-70
 Identities = 103/283 (36%), Positives = 160/283 (56%), Gaps = 9/283 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           ++K+ ++G G MG+GIA    ++ Y V++ ++++  ++ G+  +  +L   VKKGKMT+ 
Sbjct: 3   IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
             E  ++ +TG  D +  KD D+VIEA  EN+ LK++IFA L++   P  ILA+NTS++ 
Sbjct: 63  DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  +   T   D+++G HFF+P  VM L+EI+R   TS      +  + KKI KTP+ V 
Sbjct: 123 ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182

Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
           N  GF VNR+  P   +A F+L E       ID  + K G   P+GP  LADL+G    +
Sbjct: 183 NAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGM-KLGCNHPIGPLALADLIGLDTCL 241

Query: 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
           A      E F +  Y+    P++++   AG   RK   GFY Y
Sbjct: 242 AIMEVLYEGFGDSKYRPC--PLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  203 bits (517), Expect = 1e-61
 Identities = 96/296 (32%), Positives = 153/296 (51%), Gaps = 15/296 (5%)

Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
             +KKV ++G G MGSGIA     +   V L + +   L  G+  + ++L   VKKGKM+
Sbjct: 2   AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMS 61

Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
           QE+ + T+  +    + E  +D D +IEAI+E+  LK+++F++L++ C P  ILASNTS+
Sbjct: 62  QEEADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS 121

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
           I +  +   T    +++G HF +P  +M L+EI+R   TS +V      + ++  KT + 
Sbjct: 122 ISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVC 181

Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAITKFG--MPMGPFRLADLVG 378
             +  GF VNR+  P    AF  +  G     D   ID  + K G   PMGP  LAD +G
Sbjct: 182 SQDYPGFIVNRILMPMINEAFYALYTGVASKED---IDTGM-KLGTNHPMGPLHLADFIG 237

Query: 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKASP 431
               ++      E   +  Y+    P++ +   AG   RK   G Y YD +++  P
Sbjct: 238 LDTCLSIMKVLHEGLGDSKYR--PCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291

Length = 295

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  185 bits (472), Expect = 4e-55
 Identities = 98/289 (33%), Positives = 153/289 (52%), Gaps = 19/289 (6%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +++V ++G G MG+GIA     +   V++ E  E+   AG  R+  +L+  V +GK+T+ 
Sbjct: 5   IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER 64

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASNTSTI 265
           + +  ++ L    D   F D  +VIEA++E+ ++K +IFA+L+K    P  +LASNTS+I
Sbjct: 65  ERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124

Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLD-IGKKIKKTPIV 324
            +  +   T    R++G HFF+P  V+PL+E+V T  TS   +    +     + K  + 
Sbjct: 125 PIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVR 184

Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITK-FGMPMGPFRLADLVGF 379
             + +GF VN +  PY  +A  +VE G     D   ID+A+      PMGP RL+DLVG 
Sbjct: 185 AQDRSGFVVNALLVPYLLSAIRMVESGFATAED---IDKAMVLGCAHPMGPLRLSDLVGL 241

Query: 380 GV--AIATGMQFIENFPERTYKSMIIPI---MQEDKRAGETTRKGFYLY 423
               AIA  M   E F E  Y     P+   M E    G+ + +GFY Y
Sbjct: 242 DTVKAIADSM--YEEFKEPLYAPP--PLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  184 bits (470), Expect = 2e-52
 Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 7/299 (2%)

Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK 202
           A   +  VA++G G MG+GIA     + + V+L +       A    + A L   V+KGK
Sbjct: 3   ALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGK 62

Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
           +T E+ +  ++ L  V       D D+V+EAI+E + +KQ +FA LE    P CILA+NT
Sbjct: 63  LTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNT 122

Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
           S++ +  I       +R+ G HFF+P  +M L+E+V    T P V   L  + +   KTP
Sbjct: 123 SSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182

Query: 323 IVVGNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFG 380
           +   +  GF VNR   P YT+A  +L E   D   ID  + +  G  MGPF L DL+G  
Sbjct: 183 VRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLD 242

Query: 381 VAIATGMQFIEN--FPERTYK-SMIIPIMQEDKRAGETTRKGFYLY-DERRKASPDPEV 435
           V  A  M+ +    + E  ++ S+I   +    R G  + +GFY Y D  ++   +   
Sbjct: 243 VNHAV-MESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAP 300

Length = 507

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  178 bits (452), Expect = 3e-52
 Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 17/291 (5%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV---RANLQSRVKKGKM 203
           +K + ++G G+MG GIA     + Y V + +V+E+ L+  +  +      L++ V+KGKM
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
           ++++ +  ++ +     YES  D D ++EA+ E + LK+++FA+LE+   P  I+ASNTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
            I +  I      KDR +G H+F+PA VM L+E+VR   TS +     +++ KKI K PI
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 324 VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITK--FGMPMGPFRLADLVGFGV 381
            V +  GF   R    +   A    E G         + K  FG PMGPF L D++G   
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGIDT 242

Query: 382 A--IATGM-------QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
              IA  +       QFI   P  + K M++     DK+    ++ G++ Y
Sbjct: 243 VYHIAEYLYEETGDPQFI---PPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290

Length = 291

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  179 bits (456), Expect = 1e-50
 Identities = 107/309 (34%), Positives = 157/309 (50%), Gaps = 9/309 (2%)

Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ 205
            V  VA++G G MG+GIA     + + V+L ++  + L   I  + A L S V KGK+T 
Sbjct: 4   NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTA 63

Query: 206 EKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
           E+ E+T+  L  V D  +  D  +VIEAI+EN+ +K+ +FA LE+ CP   I+ASNTS++
Sbjct: 64  EECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL 123

Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
            +  I       +R+ G HFF+PA VM L+E+V    T+ +V   L +      K P+  
Sbjct: 124 SITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHC 183

Query: 326 GNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAI 383
            +  GF VNR+  P Y +A   L E+     ++D A+    G PMGPF L DL+G  V  
Sbjct: 184 HSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243

Query: 384 A-TGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY-DERRKASPDPEVKKF 438
           A T   F   + +R +      + QE   AG   RK   G Y Y +E     P   V   
Sbjct: 244 AVTCSVFNAFWQDRRFLPS--LVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDS 301

Query: 439 IEKARSMSG 447
                ++ G
Sbjct: 302 FSPRVTVVG 310

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  165 bits (420), Expect = 2e-47
 Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 9/286 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           ++K+ ++G G+MG GIA    +S +   L ++ ++ LE+    + +  +  V +GK+T+ 
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 207 KFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
             +  ++ L+  LD   +  D D+VIEA+ E + LK+ +F   + + P  C +A+NTST+
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
               I   T   +R++  HFF+P H M L+E++R  +TS + +    ++ +++ K  +VV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380
               GF  +R+       AF +++ G     D   ID+AI      PMGP  L DLVG  
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAED---IDKAIRLGLNFPMGPLELGDLVGLD 237

Query: 381 VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
             +       E   E+   + ++    +  R G  T +G Y Y  R
Sbjct: 238 TRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283

Length = 288

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  165 bits (419), Expect = 3e-47
 Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 11/284 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +KKV ++G G MG+GIA    L+ Y V+L +V+   LEAG+  +  NL  +V KGK+++E
Sbjct: 4   IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
                ++ ++   D E   D D+VIEA  E+ ++K++IFA L     P  ILA+NTS+I 
Sbjct: 64  ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS 123

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  +   T   +R +G HF +P  VM L+E++R   T         +   K+ KT  V  
Sbjct: 124 ITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAE 183

Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
           +   F VNR+  P   +A + L E    +  ID A+ K G   PMGP  LAD +G    +
Sbjct: 184 DFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAM-KLGANHPMGPLELADFIGLDTCL 242

Query: 384 ATGMQFI-ENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
           +  MQ + +   +  Y+    P++ +   AG   RK   GFY Y
Sbjct: 243 SI-MQVLHDGLADSKYRP--CPLLVKYVEAGWLGRKTGRGFYDY 283

Length = 292

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  154 bits (390), Expect = 7e-43
 Identities = 98/320 (30%), Positives = 159/320 (49%), Gaps = 36/320 (11%)

Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR--VKKGKM 203
            ++ +AI+G G MGSGIA         V+L +V E  LE    R R  ++    V     
Sbjct: 3   PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALE----RARGVIERALGVYAPLG 58

Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
                   I +  G+    +    D+VIEA+ E + LK+ +FA L+  C P  I A+NTS
Sbjct: 59  IASAGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTS 116

Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
            + +  I +     +R VG HFF+PA V+PL+E+VR ++TSPQ +   + + + I K P+
Sbjct: 117 GLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPV 176

Query: 324 VVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITKFGMPM-----GPFRLADL 376
           +V  +  GF  NR+     + A  L+E+G      ID  + K+ + +     GP    D+
Sbjct: 177 LVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVV-KWSLGIRLALTGPLEQRDM 235

Query: 377 VGFGV--AIATGM-QFIENFPERTYKSMIIPIMQEDKRAGE---TTRKGFYLYD-ERRKA 429
            G  V  A+A+ + Q +EN      ++   P+++E   AGE    + +GFY +  ERR+ 
Sbjct: 236 NGLDVHLAVASYLYQDLEN------RTTPSPLLEEKVEAGELGAKSGQGFYAWPPERRE- 288

Query: 430 SPDPEVKKFIEKARSMSGVA 449
               EV    +K+ ++  V 
Sbjct: 289 ----EVLA--DKSAALVEVR 302

Length = 311

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  138 bits (351), Expect = 2e-37
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 15/288 (5%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +K V + G G++GS IA       + V + +++++ LE    R+       V+  + T+E
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 207 KF-EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
              E  ++ +T   D  E+ KD D+VIEA+ E+  +K   + +L K  P   I A+N+ST
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
           +  +   E T   ++ +  HF +        EI+    T P+V   ++   K I   PIV
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 325 VGN-CTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITK-FGMPMGPFRLADLVGFGV 381
           +     G+ +N +  P+  AA  L  +G  D   ID+      G PMGPF + D+VG   
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVG--- 239

Query: 382 AIATGMQFIENFPERTYKSMIIPI------MQEDKRAGETTRKGFYLY 423
            + T      N+ E T                +  + G  T +GFY Y
Sbjct: 240 -LDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNY 286

Length = 287

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 98.2 bits (245), Expect = 9e-23
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 40/297 (13%)

Query: 158 MGSGIATALILSNYPVILKEVN-------EKFLEAGIGRVRANLQSRVKKGKMTQEKFEK 210
           MG GIA A   + + V L +                   +   L + V  G++   + + 
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 211 T---ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
               I+++      ++  D D+V EA+ E +  K++    L ++     I+AS TST  +
Sbjct: 61  VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120

Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327
             +       +R + AH+ +PA++MPL+E+  ++ T P V+  L  + ++I K P+V G 
Sbjct: 121 TDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGP 180

Query: 328 CTGFAVNRMFFPYTQA-----AFLLVERG-TDLYLIDRAI-TKFGMPMGPFRLADLVGFG 380
             G+ V R+     QA     A  +VE G      ID+AI T FG+      L + + +G
Sbjct: 181 SPGYIVPRI-----QALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWG 235

Query: 381 -----------VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
                      +A   G       P+R     I+    E+ R G  T  GFY Y   
Sbjct: 236 GCDILYYASRYLAGEIG-------PDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285

Length = 314

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
            VAI+G GL+G   A     + + V L + +     A    +   L+       +  E  
Sbjct: 4   SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAP 63

Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
           +  ++ +       ++  D D V E+  EN+ LK+ +FA+L+   PPH ILAS+TS +  
Sbjct: 64  DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA 123

Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG- 326
           +   E    ++R + AH  +P +++P++E+V    T+P  +     + +   ++P+ +  
Sbjct: 124 SAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRR 183

Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITKFGMP-----MGPFRLADL 376
              GF +NR+     + AF LV  G     D   ID  I + G+      MGPF   DL
Sbjct: 184 EIDGFVLNRLQGALLREAFRLVADGVASVDD---IDAVI-RDGLGLRWSFMGPFETIDL 238

Length = 308

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 87.3 bits (217), Expect = 6e-21
 Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITK-FGMPMGPFRLADLVGFGVAIATGM 387
           GF VNR+  P    A  LVE G      ID A+    G+PMGPF L+DLVG  V      
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 388 QFIENFPERTYK-SMIIPIMQEDKRAGETTRKGFYLY 423
              E F +R Y+ S ++  + E  R G  T KGFY Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 7/182 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG--IGRVRANLQSRVKKGKMT 204
           + K A +GGG++G G A   +L+   V    V +   EA   IG V AN  +      +T
Sbjct: 4   IMKAACIGGGVIGGGWAARFLLAGIDV---AVFDPHPEAERIIGEVLAN--AERAYAMLT 58

Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
                    L       E+    D + E++ E + LK+++ A+++    P  ++ S+TS 
Sbjct: 59  DAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSG 118

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
              + + E     +R+  AH ++P +++PL+E+V   +TSP+ I    +I ++I   P+ 
Sbjct: 119 FLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVH 178

Query: 325 VG 326
           + 
Sbjct: 179 IA 180

Length = 495

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 21/244 (8%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVIL---KEVNEKFLEAGIGRVRANLQSRVKKGKM 203
           +K  A +G G++GSG     +     V+        E  L A +      L+ +      
Sbjct: 7   IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGA 66

Query: 204 TQEK--FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261
           +  +  F  TI             D D + E+  E  +LK ++   + +   P  I+AS+
Sbjct: 67  SPARLRFVATIE--------ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASS 118

Query: 262 TSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 321
           TS +       R    +R V  H F+P +++PL+E++   +T+P+ +   + I + +   
Sbjct: 119 TSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMR 178

Query: 322 PI-VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY-LIDRAITKFGMP-----MGPFRLA 374
           P+ V     GF  +R+     + A  LV  G      ID AI +FG       MG F   
Sbjct: 179 PLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI-RFGAGIRWSFMGTFLTY 237

Query: 375 DLVG 378
            L G
Sbjct: 238 TLAG 241

Length = 321

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++LT + +  EEA  LGLVD VV   +L++ A + A  +
Sbjct: 157 LLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
           M+LT + V   E   LG V+ VV   +L++ A +WA DIL 
Sbjct: 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILA 198

Length = 259

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILE 41
           ++LT +P+   EA  LGLVD VV    +L+  A + A  +  
Sbjct: 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA 203

Length = 257

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
           MMLTS+P+ G EA   GLV+ V     L+  A++ A  I             L +T K  
Sbjct: 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSS 217

Query: 58  PLGEA--REIFKFARA 71
              E   RE   F   
Sbjct: 218 SYYEGVKREAKIFGEV 233

Length = 257

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LT + ++ +EA  +GLVD VV   QLV  A + A  + +     +A L        + 
Sbjct: 154 MLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADKPPLALAAL-----KAAMR 208

Query: 61  EA-REIFKFARAQARKQAPNLTHPIVCIDVVEA 92
            A  +     RAQA +  P    P    DV E 
Sbjct: 209 AALEDALPEVRAQALRLYPA---PFSTDDVKEG 238

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
           M+L  +P+  EEA  +GLV+ VV   +L + A   A  +      
Sbjct: 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPAS 204

Length = 259

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++LT +PV  +EA ++GL + VV   Q  + A + A ++
Sbjct: 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAEL 195

Length = 254

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 3   LTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----P 58
           LT+ P+  E A   GLV+ VV  ++L+  AR+ A  I+++ +  V   YK+   +     
Sbjct: 165 LTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMV-LRYKSVINDGLKLD 223

Query: 59  LGEAREIFK 67
           LG A ++ K
Sbjct: 224 LGHALQLEK 232

Length = 265

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATL 50
           M LT   +   +A   GLV  VV  ++L+  AR+ A  I  +    V  L
Sbjct: 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRAL 207

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.96
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.93
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.9
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.77
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.74
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.72
PRK07417	279	arogenate dehydrogenase; Reviewed	99.71
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.63
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.63
PLN02688	266	pyrroline-5-carboxylate reductase	99.63
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.58
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.58
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.57
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.57
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.55
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.53
PRK06545	359	prephenate dehydrogenase; Validated	99.53
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.52
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.52
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.5
PRK08507	275	prephenate dehydrogenase; Validated	99.5
PRK08655	437	prephenate dehydrogenase; Provisional	99.49
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.47
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.46
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.45
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.45
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.44
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.43
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.43
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.42
PLN02256	304	arogenate dehydrogenase	99.42
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.41
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.4
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.4
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.38
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.38
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.38
PRK07680	273	late competence protein ComER; Validated	99.37
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.35
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.35
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.35
PLN02858	1378	fructose-bisphosphate aldolase	99.35
PLN02858	1378	fructose-bisphosphate aldolase	99.34
PLN02888	265	enoyl-CoA hydratase	99.31
PLN02600	251	enoyl-CoA hydratase	99.3
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.3
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.29
PRK08818	370	prephenate dehydrogenase; Provisional	99.29
PRK12478	298	enoyl-CoA hydratase; Provisional	99.29
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.29
PRK08150	255	enoyl-CoA hydratase; Provisional	99.29
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.28
PRK05862	257	enoyl-CoA hydratase; Provisional	99.28
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.27
PRK05980	260	enoyl-CoA hydratase; Provisional	99.27
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.27
PRK07938	249	enoyl-CoA hydratase; Provisional	99.27
PRK08138	261	enoyl-CoA hydratase; Provisional	99.27
PRK07658	257	enoyl-CoA hydratase; Provisional	99.27
PRK08139	266	enoyl-CoA hydratase; Validated	99.27
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	99.26
PRK08258	277	enoyl-CoA hydratase; Provisional	99.26
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.25
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.25
PRK06143	256	enoyl-CoA hydratase; Provisional	99.25
PRK08140	262	enoyl-CoA hydratase; Provisional	99.25
PRK07799	263	enoyl-CoA hydratase; Provisional	99.24
PRK09076	258	enoyl-CoA hydratase; Provisional	99.24
PRK06495	257	enoyl-CoA hydratase; Provisional	99.24
PRK08252	254	enoyl-CoA hydratase; Provisional	99.23
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	99.23
PRK06127	269	enoyl-CoA hydratase; Provisional	99.23
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	99.23
PRK07468	262	enoyl-CoA hydratase; Provisional	99.23
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.23
PRK06563	255	enoyl-CoA hydratase; Provisional	99.22
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.22
PRK05981	266	enoyl-CoA hydratase; Provisional	99.22
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.21
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.21
PRK07657	260	enoyl-CoA hydratase; Provisional	99.21
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.21
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.21
PRK06210	272	enoyl-CoA hydratase; Provisional	99.2
PRK09245	266	enoyl-CoA hydratase; Provisional	99.2
PRK06494	259	enoyl-CoA hydratase; Provisional	99.2
PRK06142	272	enoyl-CoA hydratase; Provisional	99.2
PRK07511	260	enoyl-CoA hydratase; Provisional	99.2
PRK05995	262	enoyl-CoA hydratase; Provisional	99.2
PTZ00117	319	malate dehydrogenase; Provisional	99.19
PRK06223	307	malate dehydrogenase; Reviewed	99.18
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.18
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.18
PRK06688	259	enoyl-CoA hydratase; Provisional	99.18
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.17
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.17
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.17
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.17
PRK08259	254	enoyl-CoA hydratase; Provisional	99.16
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	99.16
PRK07659	260	enoyl-CoA hydratase; Provisional	99.16
PLN02712	667	arogenate dehydrogenase	99.16
PRK07260	255	enoyl-CoA hydratase; Provisional	99.16
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.15
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.15
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.13
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.13
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.13
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	99.13
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	99.13
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.12
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.12
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.12
PRK05864	276	enoyl-CoA hydratase; Provisional	99.11
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	99.11
PLN02921	327	naphthoate synthase	99.09
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.08
PRK08321	302	naphthoate synthase; Validated	99.06
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	99.06
PRK06144	262	enoyl-CoA hydratase; Provisional	99.05
PLN02712	667	arogenate dehydrogenase	99.04
PRK06023	251	enoyl-CoA hydratase; Provisional	99.03
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.02
PRK08260	296	enoyl-CoA hydratase; Provisional	99.01
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.01
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.0
PRK07509	262	enoyl-CoA hydratase; Provisional	99.0
PRK05870	249	enoyl-CoA hydratase; Provisional	99.0
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.99
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.99
PRK06072	248	enoyl-CoA hydratase; Provisional	98.98
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	98.98
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.97
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	98.97
PRK07327	268	enoyl-CoA hydratase; Provisional	98.96
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.95
PRK07827	260	enoyl-CoA hydratase; Provisional	98.95
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.91
PRK07854	243	enoyl-CoA hydratase; Provisional	98.9
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.9
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.87
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.86
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.84
PRK06190	258	enoyl-CoA hydratase; Provisional	98.8
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.8
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	98.8
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.79
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.77
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.76
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.75
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.75
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	98.74
PRK06444	197	prephenate dehydrogenase; Provisional	98.73
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.71
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.66
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.64
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.61
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	98.55
PRK12480	330	D-lactate dehydrogenase; Provisional	98.53
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.53
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.53
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.5
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.49
PRK08290	288	enoyl-CoA hydratase; Provisional	98.48
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	98.45
PLN02602	350	lactate dehydrogenase	98.4
PRK15076	431	alpha-galactosidase; Provisional	98.4
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.39
PRK06213	229	enoyl-CoA hydratase; Provisional	98.37
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.37
PRK08788	287	enoyl-CoA hydratase; Validated	98.35
PRK13243	333	glyoxylate reductase; Reviewed	98.35
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.33
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.31
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.3
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.3
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.29
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.27
PRK08272	302	enoyl-CoA hydratase; Provisional	98.26
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.25
PRK07574	385	formate dehydrogenase; Provisional	98.24
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.24
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.22
PLN03139	386	formate dehydrogenase; Provisional	98.22
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.22
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.18
PRK06436	303	glycerate dehydrogenase; Provisional	98.16
PRK08605	332	D-lactate dehydrogenase; Validated	98.15
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	98.12
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.12
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.11
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.03
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.01
PLN00112	444	malate dehydrogenase (NADP); Provisional	98.0
PRK05442	326	malate dehydrogenase; Provisional	98.0
PLN02928	347	oxidoreductase family protein	97.97
PRK05869	222	enoyl-CoA hydratase; Validated	97.96
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.95
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.94
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.94
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.93
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.92
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.9
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	97.9
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.88
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.87
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.86
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.81
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.8
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.77
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	97.76
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.75
PLN00106	323	malate dehydrogenase	97.72
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.72
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.7
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.67
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.66
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.65
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.64
PTZ00325	321	malate dehydrogenase; Provisional	97.64
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.64
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	97.62
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.6
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.6
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.56
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.54
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.53
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.51
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.49
PRK06932	314	glycerate dehydrogenase; Provisional	97.48
PRK06487	317	glycerate dehydrogenase; Provisional	97.48
PRK06141	314	ornithine cyclodeaminase; Validated	97.47
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.45
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.42
PRK05225	487	ketol-acid reductoisomerase; Validated	97.41
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.4
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.4
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.39
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.39
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.38
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.35
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.33
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.32
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.32
PLN02306	386	hydroxypyruvate reductase	97.32
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.29
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.26
PRK05086	312	malate dehydrogenase; Provisional	97.26
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.25
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	97.24
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.23
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	97.22
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.2
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.19
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.11
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.09
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	97.08
PRK04148	134	hypothetical protein; Provisional	97.08
PRK07340	304	ornithine cyclodeaminase; Validated	97.05
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.04
PRK08618	325	ornithine cyclodeaminase; Validated	97.02
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.01
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.96
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.96
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.96
PLN02494	477	adenosylhomocysteinase	96.94
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.92
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.9
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.9
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.88
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.88
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.83
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.83
COG2910	211	Putative NADH-flavin reductase [General function p	96.82
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	96.81
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.79
PRK08291	330	ectoine utilization protein EutC; Validated	96.79
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.78
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	96.76
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.75
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.75
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.72
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.69
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.68
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.67
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.66
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.64
PLN00203	519	glutamyl-tRNA reductase	96.64
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.63
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.62
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.61
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.6
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.6
PRK06046	326	alanine dehydrogenase; Validated	96.59
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.51
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.49
PRK06407	301	ornithine cyclodeaminase; Provisional	96.39
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.36
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.35
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.31
PRK10669	558	putative cation:proton antiport protein; Provision	96.31
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.3
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.29
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.28
PRK06823	315	ornithine cyclodeaminase; Validated	96.26
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.25
PRK09496	453	trkA potassium transporter peripheral membrane com	96.24
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.2
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.2
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.19
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.1
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.09
PRK06153	393	hypothetical protein; Provisional	96.08
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.08
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.08
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.06
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.04
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.0
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.94
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.93
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.92
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.89
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.89
PRK06270	341	homoserine dehydrogenase; Provisional	95.89
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.86
PRK07589	346	ornithine cyclodeaminase; Validated	95.86
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.82
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.75
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.74
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.67
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.67
PRK09496	453	trkA potassium transporter peripheral membrane com	95.62
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	95.61
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.59
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.58
PRK08223	287	hypothetical protein; Validated	95.54
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.5
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.49
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.49
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.49
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.45
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.43
PRK06199	379	ornithine cyclodeaminase; Validated	95.42
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.39
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.35
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.32
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.32
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.27
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.24
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.24
PRK07877	722	hypothetical protein; Provisional	95.19
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.12
CHL00194	317	ycf39 Ycf39; Provisional	95.1
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.07
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.03
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.03
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.97
PRK06349	426	homoserine dehydrogenase; Provisional	94.97
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	94.96
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.81
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.81
PRK05868	372	hypothetical protein; Validated	94.67
PLN00016	378	RNA-binding protein; Provisional	94.65
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.64
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.58
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	94.57
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.54
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.54
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.52
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	94.46
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.41
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.41
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.41
PLN03075	296	nicotianamine synthase; Provisional	94.39
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.35
PRK12828	239	short chain dehydrogenase; Provisional	94.33
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	94.31
PRK07411	390	hypothetical protein; Validated	94.3
PRK08163	396	salicylate hydroxylase; Provisional	94.3
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.28
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.27
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	94.24
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.23
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.2
PRK06753	373	hypothetical protein; Provisional	94.19
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.18
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	94.17
PRK07236	386	hypothetical protein; Provisional	94.17
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.14
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.06
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	94.06
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	94.05
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	94.02
PRK06847	375	hypothetical protein; Provisional	94.0
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.97
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.97
PRK14852	989	hypothetical protein; Provisional	93.96
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	93.96
PRK11728	393	hydroxyglutarate oxidase; Provisional	93.93
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	93.89
PRK12829	264	short chain dehydrogenase; Provisional	93.86
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.85
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.85
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.8
PRK08374	336	homoserine dehydrogenase; Provisional	93.76
PRK10637	457	cysG siroheme synthase; Provisional	93.73
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.7
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	93.67
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	93.65
PRK07588	391	hypothetical protein; Provisional	93.62
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.59
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.55
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	93.51
PRK07538	413	hypothetical protein; Provisional	93.5
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	93.49
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.47
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	93.44
PRK14851	679	hypothetical protein; Provisional	93.39
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	93.35
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	93.29
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.28
PRK14982	340	acyl-ACP reductase; Provisional	93.26
PRK06475	400	salicylate hydroxylase; Provisional	93.21
PRK07045	388	putative monooxygenase; Reviewed	93.2
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	93.19
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.19
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	93.15
PRK08013	400	oxidoreductase; Provisional	93.14
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	93.05
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.03
PRK07102	243	short chain dehydrogenase; Provisional	93.02
PRK08340	259	glucose-1-dehydrogenase; Provisional	92.99
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.91
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.87
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	92.83
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.8
PRK06940	275	short chain dehydrogenase; Provisional	92.75
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.72
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	92.72
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	92.65
PRK06196	315	oxidoreductase; Provisional	92.64
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	92.61
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	92.59
COG2344	211	AT-rich DNA-binding protein [General function pred	92.59
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.58
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.58
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.54
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	92.54
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.53
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.52
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	92.52
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	92.48
PRK08267	260	short chain dehydrogenase; Provisional	92.47
PRK07062	265	short chain dehydrogenase; Provisional	92.45
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.39
PRK06185	407	hypothetical protein; Provisional	92.28
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	92.26
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.26
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.25
PRK07326	237	short chain dehydrogenase; Provisional	92.24
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	92.24
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	92.24
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.23
PLN02985	514	squalene monooxygenase	92.2
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	92.14
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	92.11
PRK11579	346	putative oxidoreductase; Provisional	92.1
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	92.06
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	92.06
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	92.05

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=4.1e-86  Score=725.20  Aligned_cols=478  Identities=30%  Similarity=0.462  Sum_probs=417.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-------------chHHHHHHHHHHhhhccCCCcchhhcccCCCC-----CchhH
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIE-----PLGEA   62 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-------------~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~-----~~~~~   62 (496)
                      |+|||++++|+||+++||||+|||+             +++.+.|.+++++++..+.+..+.....+++.     .+...
T Consensus       174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (737)
T TIGR02441       174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR  253 (737)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence            5899999999999999999999987             55888899999887654211111110011110     11123


Q ss_pred             HHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 010966           63 REIFKFARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG  141 (496)
Q Consensus        63 ~~~~~~~~~~~~~~~~-~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~  141 (496)
                      ...+..+++++.++.+ |||||.+++++++.+...+++++++.|++.|.+|+.|++++++++.||.+|..++.+..    
T Consensus       254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~----  329 (737)
T TIGR02441       254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG----  329 (737)
T ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence            4466788999999987 59999999999999999999999999999999999999999999999999999886531    


Q ss_pred             CCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       142 ~~~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      ..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus       330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  409 (737)
T TIGR02441       330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY  409 (737)
T ss_pred             CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence            13468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN  301 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~  301 (496)
                      +++++||+|||||||++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|++|||++++
T Consensus       410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~  489 (737)
T TIGR02441       410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD  489 (737)
T ss_pred             HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchh
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV  381 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~  381 (496)
                      .|++++++.+.++++.+||.|++++|+|||++||++.++++||++++++|+++++||+++++||||||||+++|.+|||+
T Consensus       490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~  569 (737)
T TIGR02441       490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV  569 (737)
T ss_pred             CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             HHHhhhhhhhhCCCCcc--ccchHHHHHhcCCCccccCceeeeecCCC--CCCCChHHHHH-------------------
Q 010966          382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKF-------------------  438 (496)
Q Consensus       382 ~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~lG~k~g~GFY~y~~~~--~~~~~~~~~~~-------------------  438 (496)
                      ++++++.+...+++++.  |++++++|+++|++|+|||+|||+|++++  +...++.+..+                   
T Consensus       570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~p~~~~~~~g~I~  649 (737)
T TIGR02441       570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQ  649 (737)
T ss_pred             HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccCcccccCChHHHH
Confidence            99999999998887653  57899999999999999999999998653  34444443333                   


Q ss_pred             -------HHHHHHh--cCCccChhhhh---HhhcccccccccCCCcceeccccccc
Q 010966          439 -------IEKARSM--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKF  482 (496)
Q Consensus       439 -------~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~  482 (496)
                             +++...+  ++++.+++.+|   +++.||++++-.--....-+|=+...
T Consensus       650 ~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~  705 (737)
T TIGR02441       650 IRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV  705 (737)
T ss_pred             HHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence                   3333343  68888999998   89999998776555544444544433

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=3.2e-84  Score=709.02  Aligned_cols=473  Identities=30%  Similarity=0.522  Sum_probs=409.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCC----CchhHHHHHHHHHHHHHhh
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----PLGEAREIFKFARAQARKQ   76 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   76 (496)
                      |+|||++++|++|+++||||+|+|+++++++|.++++++.....++.+..  .+...    +.......+..+++++.++
T Consensus       166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (714)
T TIGR02437       166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAKGMVAQV  243 (714)
T ss_pred             HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999988665321211111  01111    1111112244566655555


Q ss_pred             -CCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeC
Q 010966           77 -APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG  155 (496)
Q Consensus        77 -~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa  155 (496)
                       .++||||..++++++.+...+++++++.|++.|.+|+.||++++++++||.+|+.++.++.  .+..++++++|+|||+
T Consensus       244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa  321 (714)
T TIGR02437       244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA  321 (714)
T ss_pred             hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence             4599999999999999999999999999999999999999999999999999999887532  1234678999999999


Q ss_pred             ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEecc
Q 010966          156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII  235 (496)
Q Consensus       156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~  235 (496)
                      |+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++++.+..+++|+++++++++++||+||||||
T Consensus       322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~  401 (714)
T TIGR02437       322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV  401 (714)
T ss_pred             chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 010966          236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG  315 (496)
Q Consensus       236 e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~  315 (496)
                      |++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.||+|||++++.|++++++.+.+++
T Consensus       402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~  481 (714)
T TIGR02437       402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA  481 (714)
T ss_pred             ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCC
Q 010966          316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP  394 (496)
Q Consensus       316 ~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~  394 (496)
                      +.+||+|++++|+|||++||++.++++||.+++++|+++++||++|+ +||||||||+++|.+|||+++++++.+...++
T Consensus       482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~  561 (714)
T TIGR02437       482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP  561 (714)
T ss_pred             HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998 89999999999999999999999999998888


Q ss_pred             CCc--cccchHHHHHhcCCCccccCceeeeecCC---C-CCCCChHHHHHH------------------------HHHHH
Q 010966          395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFI------------------------EKARS  444 (496)
Q Consensus       395 ~~~--~~~~~l~~~~~~G~lG~k~g~GFY~y~~~---~-~~~~~~~~~~~~------------------------~~~~~  444 (496)
                      +++  .+++++++|+++|++|+|||+|||+|+++   + +..+++++..++                        ++...
T Consensus       562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~  641 (714)
T TIGR02437       562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYEQRDFDDEEIIARMMIPMINETVR  641 (714)
T ss_pred             cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            764  24579999999999999999999999643   2 334555543333                        23333


Q ss_pred             h--cCCccChhhhh---HhhcccccccccCCCcceecc
Q 010966          445 M--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLG  477 (496)
Q Consensus       445 ~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g  477 (496)
                      +  ++++.+++.+|   +++.||+++.-.-...+.-+|
T Consensus       642 ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~G  679 (714)
T TIGR02437       642 CLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIG  679 (714)
T ss_pred             HHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence            3  57889999998   899999986654444333344

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=5.6e-83  Score=699.35  Aligned_cols=475  Identities=34%  Similarity=0.538  Sum_probs=412.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCC--CCchhHHHHHHHHHHHHHhhCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP   78 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (496)
                      |+|||++++|++|+++||||+|+|+++++++|.++|++......|.    .....+  .++...+..+..+++++.++.+
T Consensus       162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~  237 (699)
T TIGR02440       162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL----SLQERLLEGTPLGRALLFDQAAKKTAKKTQ  237 (699)
T ss_pred             HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc----cchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence            5799999999999999999999999999999999997510000010    000011  1111223345567777877765


Q ss_pred             -CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCCh
Q 010966           79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL  157 (496)
Q Consensus        79 -~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~  157 (496)
                       +||||.++|++++.+...+++++++.|++.|..++.|+++++++++|+.+++.++.++. .  ...++++||+|||+|+
T Consensus       238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~  314 (699)
T TIGR02440       238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL  314 (699)
T ss_pred             cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence             89999999999999999999999999999999999999999999999999999887553 2  2346789999999999


Q ss_pred             hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccC
Q 010966          158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE  236 (496)
Q Consensus       158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e  236 (496)
                      ||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus       315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E  394 (699)
T TIGR02440       315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE  394 (699)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence            9999999998 589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 010966          237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK  316 (496)
Q Consensus       237 ~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~  316 (496)
                      ++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|++
T Consensus       395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~  474 (699)
T TIGR02440       395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK  474 (699)
T ss_pred             cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC
Q 010966          317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER  396 (496)
Q Consensus       317 ~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~  396 (496)
                      .+||.|++++|.|||++||++.++++||++++++|+++++||.+|+++|||||||+++|.+|+|+++++++.+++.++++
T Consensus       475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~  554 (699)
T TIGR02440       475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER  554 (699)
T ss_pred             HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccchHHHHHhcCCCccccCceeeeecCC-CCCCCChHH----------------------HHHHHHHHHh--cCCccC
Q 010966          397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEV----------------------KKFIEKARSM--SGVAID  451 (496)
Q Consensus       397 ~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~-~~~~~~~~~----------------------~~~~~~~~~~--~~~~~~  451 (496)
                      +.|++++++|+++|++|+|||+|||+|+++ ++..+++.+                      ..++++...+  ++++.+
T Consensus       555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~Rll~~~~~Ea~~ll~eGvva~  634 (699)
T TIGR02440       555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGIKPGVDKEASAVAERCVMLMLNEAVRCLDEGVIRS  634 (699)
T ss_pred             CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCC
Confidence            888899999999999999999999999854 223333322                      2344444454  678899


Q ss_pred             hhhhh---HhhcccccccccCCCcceeccccccc
Q 010966          452 PKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKF  482 (496)
Q Consensus       452 ~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~  482 (496)
                      ++.+|   +++.||++..-.-...+.-+|=+...
T Consensus       635 ~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~  668 (699)
T TIGR02440       635 PRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVV  668 (699)
T ss_pred             HHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHH
Confidence            99998   78999998665544444444444333

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=9.2e-83  Score=699.22  Aligned_cols=476  Identities=34%  Similarity=0.553  Sum_probs=410.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCC----chhHHHHHHHHHHHHHhh
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEP----LGEAREIFKFARAQARKQ   76 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   76 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++.++.++....  .+...+    .......++.+++.+.++
T Consensus       166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k~~~~~~  243 (715)
T PRK11730        166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAKGMVAQK  243 (715)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999997521221111  011000    111223456677776555


Q ss_pred             C-CCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeC
Q 010966           77 A-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG  155 (496)
Q Consensus        77 ~-~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa  155 (496)
                      . ++||+|..++++++.+...+++++++.|.+.|..++.|+++++++++|+++|+.++.+..  .....++|+||+|||+
T Consensus       244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~v~ViGa  321 (715)
T PRK11730        244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQAAVLGA  321 (715)
T ss_pred             hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccceEEEECC
Confidence            4 589999999999999998899999999999999999999999999999999999886532  1223567999999999


Q ss_pred             ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEecc
Q 010966          156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII  235 (496)
Q Consensus       156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~  235 (496)
                      |+||.+||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus       322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~  401 (715)
T PRK11730        322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV  401 (715)
T ss_pred             chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 010966          236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG  315 (496)
Q Consensus       236 e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~  315 (496)
                      |++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|+
T Consensus       402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~  481 (715)
T PRK11730        402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA  481 (715)
T ss_pred             CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCC
Q 010966          316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP  394 (496)
Q Consensus       316 ~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~  394 (496)
                      +.+||.|++++|+|||++||++.++++||++++++|+++++||++|+ ++|||||||+++|.+|||+++++++.++..++
T Consensus       482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~  561 (715)
T PRK11730        482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP  561 (715)
T ss_pred             HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999 89999999999999999999999999998888


Q ss_pred             CCc--cccchHHHHHhcCCCccccCceeeeecCCC----CCCCChHHHH------------------------HHHHHHH
Q 010966          395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKK------------------------FIEKARS  444 (496)
Q Consensus       395 ~~~--~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~----~~~~~~~~~~------------------------~~~~~~~  444 (496)
                      ++.  .+++++++|+++|++|+|||+|||+|+++.    +...++.+.+                        ++++...
T Consensus       562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nRll~~~~~Ea~~  641 (715)
T PRK11730        562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQPKREFSDEEIIARMMIPMINEVVR  641 (715)
T ss_pred             CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            764  246799999999999999999999996431    2334444332                        2333333


Q ss_pred             h--cCCccChhhhh---HhhcccccccccCCCcceeccccc
Q 010966          445 M--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGI  480 (496)
Q Consensus       445 ~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~  480 (496)
                      +  ++++.+++.+|   +++.||++..-.-.....-+|-++
T Consensus       642 ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~  682 (715)
T PRK11730        642 CLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVAN  682 (715)
T ss_pred             HHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHH
Confidence            3  57778899998   678999875443333333344333

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=5.3e-82  Score=693.32  Aligned_cols=477  Identities=33%  Similarity=0.512  Sum_probs=415.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCC-C-CchhHHHHHHHHHHHHHhhCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI-E-PLGEAREIFKFARAQARKQAP   78 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~   78 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.++|+++.... +. ..  ...++ . ++...+..+..+++++.++.+
T Consensus       167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~-~~-~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  242 (708)
T PRK11154        167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPAR-RP-LP--VRERLLEGNPLGRALLFKQARKKTLAKTQ  242 (708)
T ss_pred             HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCcc-Cc-CC--chhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999998842110 00 00  00001 1 111223456678889999987


Q ss_pred             -CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCCh
Q 010966           79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL  157 (496)
Q Consensus        79 -~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~  157 (496)
                       +|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|+.+++.++.++. +  ..+++++||+|||+|+
T Consensus       243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~  319 (708)
T PRK11154        243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL  319 (708)
T ss_pred             cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence             89999999999999999999999999999999999999999999999999998887553 2  2346799999999999


Q ss_pred             hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccC
Q 010966          158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE  236 (496)
Q Consensus       158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e  236 (496)
                      ||++||..++ .+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus       320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E  399 (708)
T PRK11154        320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE  399 (708)
T ss_pred             hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence            9999999999 889999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 010966          237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK  316 (496)
Q Consensus       237 ~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~  316 (496)
                      ++++|+++|++++++++|++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..+++
T Consensus       400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~  479 (708)
T PRK11154        400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK  479 (708)
T ss_pred             cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC
Q 010966          317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER  396 (496)
Q Consensus       317 ~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~  396 (496)
                      .+||.|++++|+|||++||++.++++||++++++|+++++||.+|+++|||+|||+++|.+|+|++.++++.+.+.++++
T Consensus       480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~  559 (708)
T PRK11154        480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER  559 (708)
T ss_pred             HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccccchHHHHHhcCCCccccCceeeeecCCC---CCCCChHH----------------------HHHHHHHHHh--cCCc
Q 010966          397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEV----------------------KKFIEKARSM--SGVA  449 (496)
Q Consensus       397 ~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~---~~~~~~~~----------------------~~~~~~~~~~--~~~~  449 (496)
                      +.+++++++|+++|++|+|||+|||+|+++.   +...++++                      ..++++...+  ++++
T Consensus       560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~Rll~~~~nEa~~ll~eGvv  639 (708)
T PRK11154        560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGITPQSRLSANEIAERCVMLMLNEAVRCLDEGII  639 (708)
T ss_pred             CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            7788899999999999999999999997532   12233332                      2344455554  6788


Q ss_pred             cChhhhh---HhhcccccccccCCCcceeccccccccc
Q 010966          450 IDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKFNT  484 (496)
Q Consensus       450 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~~~  484 (496)
                      .+++.+|   +++.||++..-..-..+.-+|-+...++
T Consensus       640 a~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~  677 (708)
T PRK11154        640 RSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAI  677 (708)
T ss_pred             CCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHH
Confidence            8899998   7999999866554444444554444333

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=1.1e-70  Score=537.08  Aligned_cols=280  Identities=38%  Similarity=0.679  Sum_probs=270.7

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .++||+|||+|+||++||..++.+|++|+++|++++.+++++..+.+.+++++++|++++++.+..++++++++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            57899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||+|||+|+|++++|+++|+++++++++++|++||||++|++++++.+.+|+||+|+|||||++.|+|||++++..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~  383 (496)
                      ++++++.+|.+.+||.|++++|+|||++||++.++++||++++.+|+ ++++||.+|+ ++|||||||+++|.+|+|+++
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999996 9999999999 899999999999999999999


Q ss_pred             HhhhhhhhhCCCC-cc-ccchHHHHHhcCCCccccCceeeeecC
Q 010966          384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE  425 (496)
Q Consensus       384 ~~~~~l~~~~~~~-~~-~~~~l~~~~~~G~lG~k~g~GFY~y~~  425 (496)
                      ++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            9999999888733 33 678999999999999999999999985

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-70  Score=490.44  Aligned_cols=280  Identities=36%  Similarity=0.574  Sum_probs=266.0

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhcceeccc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL  219 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~  219 (496)
                      .+++.|+|||+|.||++||+..+.+|++|+++|.+++.+.++.+.|.+.+.+..+++..+...     ++..+++|..++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999999999999999999999988887765443     256788999999


Q ss_pred             Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE
Q 010966          220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV  298 (496)
Q Consensus       220 ~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv  298 (496)
                      +.+ .++++|+||||+.|++++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|+|||++
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi  168 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI  168 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence            875 4789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhc
Q 010966          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL  376 (496)
Q Consensus       299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~  376 (496)
                      +++.|+++++..+..|.+.+||+++.|+|.||||+||+|.||++||+++++.|. +-+|||.+|+ |.|+||||||+.|+
T Consensus       169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy  248 (298)
T KOG2304|consen  169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY  248 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997 9999999999 99999999999999


Q ss_pred             cCchhHHHhhhhhhhhCCCC--ccccchHHHHHhcCCCccccCceeeeec
Q 010966          377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD  424 (496)
Q Consensus       377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~~~~G~lG~k~g~GFY~y~  424 (496)
                      +|||++.-+++-|++.+|+.  +.|+|++.++|++|++|||+|+|||+|.
T Consensus       249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            99999999999999999764  5699999999999999999999999994

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.9e-64  Score=498.00  Aligned_cols=279  Identities=33%  Similarity=0.547  Sum_probs=270.0

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      ++++||+|||+|.||++||.+++.+|++|++||++++.++.+.+++.+.+++.+++|.++..+....+++++++++++++
T Consensus         3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   82 (286)
T PRK07819          3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF   82 (286)
T ss_pred             CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhC-CCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      ++||+|||||||++++|+++|+++++.+ ++++|++||||++++++++..+.+|+|++|+|||+|++.++++||+++..|
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T  162 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT  162 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence            9999999999999999999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH-HcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966          304 SPQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (496)
Q Consensus       304 ~~e~~~~~~~l~~-~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld  380 (496)
                      ++++++.+.+++. .+||.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|
T Consensus       163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld  242 (286)
T PRK07819        163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD  242 (286)
T ss_pred             CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence            9999999999988 599999999999999999999999999999999998 9999999998 999999999999999999


Q ss_pred             hHHHhhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeee
Q 010966          381 VAIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY  423 (496)
Q Consensus       381 ~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y  423 (496)
                      ++.++++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus       243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            9999999999998874 468899999999999999999999998

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=1.2e-61  Score=511.17  Aligned_cols=282  Identities=35%  Similarity=0.567  Sum_probs=270.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +++||+|||+|+||++||.+++.+|++|++||++++.++++.+++++.++..+++|.+++++.+..+++++.++++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~  383 (496)
                      ++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. ++++||++|+ ++|||||||+++|++|+|+++
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999985 9999999999 899999999999999999999


Q ss_pred             HhhhhhhhhC-CCC-ccccchHHHHHhcCCCccccCceeeeecCCC
Q 010966          384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR  427 (496)
Q Consensus       384 ~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~  427 (496)
                      ++++.+.+.+ ++. +.|++++++|+++|++|+|||+|||+|+++.
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~  289 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEA  289 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCC
Confidence            9999888764 554 4467889999999999999999999998654

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.4e-60  Score=501.61  Aligned_cols=283  Identities=34%  Similarity=0.544  Sum_probs=270.6

Q ss_pred             cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       144 ~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      .+++++|+|||+|.||++||.+++.+|++|++||++++.++++.+++.+.+++.+++|.++.++.+..++++++++++++
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+|||||||+.++|+.+|+++++.+++++|++||||+++++++++.+.+|+||+|+|||+|++.++|+|+++++.|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchh
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV  381 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~  381 (496)
                      ++++++.+.++++.+||.|++++|+|||++||++.++++||++++++|. ++++||++|+ ++|||||||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            9999999999999999999999999999999999999999999999986 9999999998 8999999999999999999


Q ss_pred             HHHhhhhhhhhC-CC-CccccchHHHHHhcCCCccccCceeeeecCC
Q 010966          382 AIATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDER  426 (496)
Q Consensus       382 ~~~~~~~l~~~~-~~-~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~  426 (496)
                      .+++.+.+...+ ++ ++.+++++++|++.|++|+|||+|||+|+++
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~  290 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADG  290 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCC
Confidence            999999888764 33 4557789999999999999999999999755

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.3e-59  Score=466.67  Aligned_cols=279  Identities=27%  Similarity=0.445  Sum_probs=263.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcceecccCcc-c
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~  223 (496)
                      +++||+|||+|.||++||..++.+|++|++||++++.++++.+.+.+.++...+.+.++..+ .+...++++.+++++ .
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            36899999999999999999999999999999999999999999888888888888887766 666778998888886 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+||+|+||+.++|+++++++.+.+++++||+||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCceEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld  380 (496)
                      ++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||++|+ ++|+|+|||+++|.+|+|
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999999 599999999999999999999999997 9999999998 999999999999999999


Q ss_pred             hHHHhhhhhhhhCCCCcc--ccchHHHHHhcCCCccccCceeeeec
Q 010966          381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD  424 (496)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~lG~k~g~GFY~y~  424 (496)
                      ++.++++.+.+.+++.++  |++++++|+++|++|+|||+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999988753  78899999999999999999999994

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.9e-59  Score=462.41  Aligned_cols=281  Identities=29%  Similarity=0.517  Sum_probs=268.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++...++..++.|.++..+.+...++++.++++ +.++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            468999999999999999999999999999999999999988888888888888999988888888899988888 4689


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||+||+|+|++.++|+.+++++.+.+++++|+++|||+++++++++.+.+|.|++|+||++|++.++++|+++++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~  383 (496)
                      ++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ ++++||.+|+ ++|||+|||+++|.+|+|++.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 9999999999 999999999999999999999


Q ss_pred             HhhhhhhhhCCCCccccchHHHHHhcCCCccccCceeeeecCCC
Q 010966          384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR  427 (496)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~  427 (496)
                      ++++.+...+++++.|++++.+|+++|++|+|||+|||+|++++
T Consensus       241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  284 (288)
T PRK09260        241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE  284 (288)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence            99999999898888888999999999999999999999998654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-58  Score=458.21  Aligned_cols=277  Identities=35%  Similarity=0.610  Sum_probs=266.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      |+||+|||+|.||.+||..++.+|++|+++|++++.++.+.+++.+.++...+.|.++..+......+++.+++++++++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~   82 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD   82 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence            67999999999999999999999999999999999999999999999999999999888888888889998888888999


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHH
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ  306 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e  306 (496)
                      ||+||+|+||+.++|+++++++.++++++++|+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|+++
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e  162 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA  162 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHH
Q 010966          307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA  384 (496)
Q Consensus       307 ~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~  384 (496)
                      +.+.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ |+|||+|||+++|.+|+|.+.+
T Consensus       163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~  242 (282)
T PRK05808        163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA  242 (282)
T ss_pred             HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence            9999999999999999999999999999999999999999999998 9999999999 9999999999999999999999


Q ss_pred             hhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeee
Q 010966          385 TGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY  423 (496)
Q Consensus       385 ~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y  423 (496)
                      +++.+.+.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus       243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            999999999874 457889999999999999999999998

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.6e-58  Score=458.46  Aligned_cols=278  Identities=32%  Similarity=0.553  Sum_probs=262.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +++||+|||+|.||.+||..++.+|++|++||++++.++.+.+++.+   .++..++.|.++..+.+..++++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            36899999999999999999999999999999999999988877765   366677888888888888888898888887


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ  302 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~  302 (496)
                      .+++||+||||+|++.++|+++++++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966          303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (496)
Q Consensus       303 t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld  380 (496)
                      |++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||++|+ ++|+|+|||+++|.+|+|
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999997 9999999998 999999999999999999


Q ss_pred             hHHHhhhhhhhhCCCCc-cccchHHHHHhcCCCcccc-----Cceeeee
Q 010966          381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY  423 (496)
Q Consensus       381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~G~lG~k~-----g~GFY~y  423 (496)
                      ++.++++.+++.+++++ .|++++++|+++|++|+||     |+|||+|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            99999999999998755 5778999999999999999     9999998

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=5.4e-58  Score=457.18  Aligned_cols=283  Identities=31%  Similarity=0.555  Sum_probs=270.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++.+.++..++.|.+++++.+..+++++++++++.++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999888888888888888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~  383 (496)
                      ++++.+.++++.+|+.+++++|.+||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999998 9999999999 999999999999999999999


Q ss_pred             HhhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeeecCCCC
Q 010966          384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRK  428 (496)
Q Consensus       384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~  428 (496)
                      ++++.+.+.+++. +.|++++.+|+++|++|+|+|+|||+|+++++
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~~  288 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKR  288 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCCC
Confidence            9999999999874 45888999999999999999999999987654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.3e-57  Score=453.81  Aligned_cols=281  Identities=32%  Similarity=0.528  Sum_probs=267.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +++||+|||+|.||.+||..++.+|++|++||++++.++.+.+++.+.++..++.|.++..+.+..+.++++++++++++
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   82 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA   82 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence            57899999999999999999999999999999999999999999998888888889888877777888899888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||+||+||||+.++|+.+++++.+.++++++|+||||+++++++++.+.+|+|++|+|||+|++.++++|++++..|++
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~  162 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE  162 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~  383 (496)
                      ++++.+.++++.+|+.|++++|.|||++||++.++++|++.++++|+ ++++||.+|+ ++|||+|||+++|.+|+|++.
T Consensus       163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~  242 (292)
T PRK07530        163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL  242 (292)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999 9999999999 999999999999999999999


Q ss_pred             HhhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeeecCC
Q 010966          384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER  426 (496)
Q Consensus       384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~  426 (496)
                      ++++.+++.+++. +.|++++.+|++.|++|+|+|+|||+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999988874 457789999999999999999999999654

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.4e-56  Score=445.86  Aligned_cols=269  Identities=26%  Similarity=0.389  Sum_probs=255.6

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC--c-ccccCC
Q 010966          158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV  227 (496)
Q Consensus       158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a  227 (496)
                      ||++||..++.+|++|+++|++++       .++++.+++.+.++..+++|.+++++.+..+++++++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       467789999999999999999999999999999998764  3 568999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHH
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV  307 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~  307 (496)
                      |+|||||||++++|+.+|+++++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.+++|||++++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhccCchhH
Q 010966          308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA  382 (496)
Q Consensus       308 ~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~Gld~~  382 (496)
                      ++.+.++++.+||.|++++|.+||++||++.++++|++.++++|+ ++++||.+|+ ++|||   +|||+++|.+|+|++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999986 9999999999 99999   699999999999999


Q ss_pred             HHhhhhhhhhCCC-CccccchHHHHHhcCCCccccCceeeeecCC
Q 010966          383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDER  426 (496)
Q Consensus       383 ~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~  426 (496)
                      .++++.+.+.+++ ++.|++++++|+++|++|+|||+|||+|++.
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~~  285 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV  285 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCCC
Confidence            9999999998887 5668899999999999999999999999653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.7e-56  Score=445.07  Aligned_cols=278  Identities=22%  Similarity=0.298  Sum_probs=249.4

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-c
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S  223 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  223 (496)
                      ++++||+|||+|+||++||..|+.+|++|++||++++.++.+..++.+.++...+.| +..   ....++++.+++++ .
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHH
Confidence            457899999999999999999999999999999999999999999998888888877 333   23446888888885 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++++.|
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T  160 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT  160 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCceEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV  377 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~  377 (496)
                      ++++++.+.+|++.+||.|+++ +|.|||++||++.++++||++++++|+ |++|||++|+ |+|+|   +|||+++|++
T Consensus       161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~  240 (321)
T PRK07066        161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA  240 (321)
T ss_pred             CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence            9999999999999999999999 699999999999999999999999997 9999999999 99987   9999999999


Q ss_pred             Cchh-HHHhhhhhhhhCCCC---ccccchHHHHHh------cCCCccccCceeeeecCC
Q 010966          378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDER  426 (496)
Q Consensus       378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~~~------~G~lG~k~g~GFY~y~~~  426 (496)
                      |+|. +.+.++.+.+.+.+.   +.++++..+|++      ++.+|.++..+||.|.+.
T Consensus       241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~  299 (321)
T PRK07066        241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRDE  299 (321)
T ss_pred             ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9998 455556666554321   223457777777      789999999999999753

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=7.7e-49  Score=394.38  Aligned_cols=279  Identities=31%  Similarity=0.535  Sum_probs=248.5

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-c
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S  223 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  223 (496)
                      ++++||+|||+|.||++||..|+++|++|++||++++.++...+.+.+........+.     ....+.+++.+++++ .
T Consensus         2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~   76 (311)
T PRK06130          2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAA   76 (311)
T ss_pred             CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHH
Confidence            3578999999999999999999999999999999999988877665543332222111     012335566677775 4


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+||+|||++.++|+.+++++.+.++++++|+|+||+++++++++.+.++.+|+|+||++|++.++++++++++.|
T Consensus        77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t  156 (311)
T PRK06130         77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKT  156 (311)
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV  377 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~  377 (496)
                      ++++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+|+ ++|||   +|||+++|.+
T Consensus       157 ~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~  236 (311)
T PRK06130        157 SPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMN  236 (311)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhh
Confidence            99999999999999999999996 78999999999999999999999986 9999999998 99998   7999999999


Q ss_pred             CchhHHHhhhhhhhhCCCCccccchHHHHHhcCCCccccCceeeeecCCCC
Q 010966          378 GFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK  428 (496)
Q Consensus       378 Gld~~~~~~~~l~~~~~~~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~  428 (496)
                      |+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|++++.
T Consensus       237 Gl~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~~  287 (311)
T PRK06130        237 GLDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPERR  287 (311)
T ss_pred             ccchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCCH
Confidence            999999999999999988877889999999999999999999999976543

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-47  Score=370.23  Aligned_cols=319  Identities=39%  Similarity=0.575  Sum_probs=288.4

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCC
Q 010966          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN  237 (496)
Q Consensus       158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~  237 (496)
                      ||++||..+..+|++|++.|.|...++.+..++...+.+.+++++++..+......+++.+.|+..++++|+|||+|.|+
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 010966          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (496)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~  317 (496)
                      +++|++++.+|++.+++++|++||||++++.++++.+++|++++|+|||+|++.|+++|++.+..|+..++..+.+....
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEecCcccchhhchHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC
Q 010966          318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER  396 (496)
Q Consensus       318 lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~-g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~  396 (496)
                      .|+.|+++++++||.+||++.+|..++.+++.+ |++|.++|.....||||+||+.+.|..|+|+..+....+...++++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence            999999999999999999999999999998877 8999999999999999999999999999999998887776666533


Q ss_pred             ccccchHHHHHhcCCCccccCceeeeecCCCCCCCCh-H--------------------------HHHHHHHHHHh--cC
Q 010966          397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-E--------------------------VKKFIEKARSM--SG  447 (496)
Q Consensus       397 ~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~~~~~~-~--------------------------~~~~~~~~~~~--~~  447 (496)
                           +.++|++.|+.|+|||+|||.|+++.+...++ +                          ..+.+++.-.|  ++
T Consensus       241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EG  315 (380)
T KOG1683|consen  241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEG  315 (380)
T ss_pred             -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence                 68899999999999999999998763332222 1                          22334444444  68


Q ss_pred             CccChhhhh---HhhcccccccccCCCcceecccccc
Q 010966          448 VAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIK  481 (496)
Q Consensus       448 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~  481 (496)
                      ++..+..+|   |||.||+|+....-++-...|.+..
T Consensus       316 i~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki  352 (380)
T KOG1683|consen  316 LKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKI  352 (380)
T ss_pred             HhcCccccceeeeeccCCCCcCCCceeeeeccChHHH
Confidence            888888888   8999999999888777666666543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.5e-41  Score=338.93  Aligned_cols=263  Identities=24%  Similarity=0.337  Sum_probs=244.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (496)
                      +|++|+|||+|.||++||..|+++|++|++||++++.++.+.+++...++...+.|.++..+....+++++.+++++ .+
T Consensus         1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            36799999999999999999999999999999999999999999999998888999888777788888888888885 57


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~  304 (496)
                      ++||+||+|+|++.++|+.+++++.+.++++++++||||+++++++++.+.++.++++.|||+|++.++++|+++++.|+
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~  160 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA  160 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc-
Q 010966          305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV-  377 (496)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~-  377 (496)
                      +++++.+.++++.+|+.|++++ +.+||++||++.++++||+.++++|. |+++||++++ ++|++   +|||++.|.. 
T Consensus       161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~  240 (308)
T PRK06129        161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA  240 (308)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence            9999999999999999999995 88999999999999999999999886 9999999999 89987   8999999987 


Q ss_pred             --CchhHHHhhhhhhhhCCCCc-cccchHHHHHh
Q 010966          378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQE  408 (496)
Q Consensus       378 --Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~~~  408 (496)
                        |++........++..+.+.. .|+|++++|++
T Consensus       241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK06129        241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA  274 (308)
T ss_pred             cccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence              89999998888888877754 47788888887

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=6.3e-41  Score=309.02  Aligned_cols=180  Identities=38%  Similarity=0.648  Sum_probs=161.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (496)
                      ||+|||+|.||++||.+++.+|++|++||++++.++.+.+++.+.++..+++|.+++++....+++++++++++++.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHH
Q 010966          229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI  308 (496)
Q Consensus       229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~  308 (496)
                      +||||+||++++|+++|++|++.+++++||+||||++++++|++.+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCceEEecCc
Q 010966          309 VDLLDIGKKIKKTPIVVGNC  328 (496)
Q Consensus       309 ~~~~~l~~~lGk~~v~v~d~  328 (496)
                      +.+.+|++.+||.|++++|+
T Consensus       161 ~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES-
T ss_pred             HHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999873

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=5.6e-38  Score=332.91  Aligned_cols=244  Identities=23%  Similarity=0.317  Sum_probs=207.3

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (496)
                      +++||+|||+|+||++||..|+++|++|++||++++.++...+.+...... .  +.+.... ....++++++++++ .+
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~-~--~~l~~~~-~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERA-Y--AMLTDAP-LPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH-H--hhhccch-hhhhhceEeeCCHHHHh
Confidence            467999999999999999999999999999999999887643322221111 1  1111110 11234567777774 68


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~  304 (496)
                      ++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.++.++++.|||||++.++++|+++++.|+
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhccC
Q 010966          305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG  378 (496)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~G  378 (496)
                      +++++.+.++++.+|+.|++++ +.+||++||++.++++||+.++++|. |+++||++++ ++|+.   +|||++.|+.|
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g  238 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG  238 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence            9999999999999999999995 89999999999999999999999885 9999999999 87753   89999999998


Q ss_pred             ch-hHHHhhhhhhhhC
Q 010966          379 FG-VAIATGMQFIENF  393 (496)
Q Consensus       379 ld-~~~~~~~~l~~~~  393 (496)
                      ++ .+.+.++++.+.+
T Consensus       239 ~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        239 GEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cHHHHHHHHHHhchhh
Confidence            54 4556666666554

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-34  Score=261.08  Aligned_cols=229  Identities=28%  Similarity=0.462  Sum_probs=211.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ..||+|+|.|..|+++|..|++.||+|.+||+.++++.-+++.+++.+.++-+.    |.++.   ++.+..|..+++++
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~   79 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN   79 (313)
T ss_pred             ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence            469999999999999999999999999999999999999999998888777655    44553   45677888899985


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCC
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN  301 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~  301 (496)
                       .++++=.|-|||||++++|+++|+++++.+.+.+|++|+||++.++.+.+.+.+.++++-.||.|||...||||++|.|
T Consensus        80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP  159 (313)
T KOG2305|consen   80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP  159 (313)
T ss_pred             HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence             5799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhh
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLAD  375 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D  375 (496)
                      -|+++++++..++.+.+|..|+..+ +.-||.+||+..+++||.-+++..|+ +..|+|.+|. |+|..   .||+|.+.
T Consensus       160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H  239 (313)
T KOG2305|consen  160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH  239 (313)
T ss_pred             CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence            9999999999999999999999885 67899999999999999999999998 9999999999 99976   59999887


Q ss_pred             ccC
Q 010966          376 LVG  378 (496)
Q Consensus       376 ~~G  378 (496)
                      +--
T Consensus       240 LNA  242 (313)
T KOG2305|consen  240 LNA  242 (313)
T ss_pred             cCc
Confidence            654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.96  E-value=5.4e-29  Score=263.88  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=153.5

Q ss_pred             hCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       251 ~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      .+.+++++++++++.+.+..+....+|+|++|+|||+|++.++++||++++.|++++++.+.++++.+||.|++++|.||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G  416 (507)
T PRK08268        337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG  416 (507)
T ss_pred             cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence            34678888888888778888777778999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCCC-CccccchHHHHH
Q 010966          331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ  407 (496)
Q Consensus       331 ~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~  407 (496)
                      |++||++.++++||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|+++++++.++..+++ ++.|++++++|+
T Consensus       417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v  496 (507)
T PRK08268        417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA  496 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence            9999999999999999999998 9999999999 999999999999999999999999999999986 556889999999


Q ss_pred             hcCCCccccCceeee
Q 010966          408 EDKRAGETTRKGFYL  422 (496)
Q Consensus       408 ~~G~lG~k~g~GFY~  422 (496)
                      ++|       +.||.
T Consensus       497 ~~G-------~~~~~  504 (507)
T PRK08268        497 ALG-------LSLRS  504 (507)
T ss_pred             HcC-------CCcCC
Confidence            986       66865

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.93  E-value=1.7e-26  Score=191.49  Aligned_cols=94  Identities=40%  Similarity=0.635  Sum_probs=87.5

Q ss_pred             cchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCCCCcc-ccchHHHH
Q 010966          330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM  406 (496)
Q Consensus       330 G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~  406 (496)
                      ||++||++.++++||++++++|+ |+++||.+++ ++|||+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            89999999999999999999996 9999999999 899999999999999999999999999999998844 68999999


Q ss_pred             HhcCCCccccCceeeee
Q 010966          407 QEDKRAGETTRKGFYLY  423 (496)
Q Consensus       407 ~~~G~lG~k~g~GFY~y  423 (496)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.90  E-value=5.2e-22  Score=210.09  Aligned_cols=118  Identities=15%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcch
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP  370 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GP  370 (496)
                      ..+||++++.|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ |+|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            578999999999999999999999999999999999999999999999999999999999 8999999999 99999999


Q ss_pred             hHhhhccCchhHHHhhhhhhhhCCC-CccccchHHHHHhcC
Q 010966          371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK  410 (496)
Q Consensus       371 f~l~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G  410 (496)
                      |+|+|.+|+|+++++++.+++.+++ ++.|+++|++|+..|
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g  498 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG  498 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence            9999999999999999999999985 556889999999987

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.77  E-value=1.6e-17  Score=161.53  Aligned_cols=189  Identities=20%  Similarity=0.249  Sum_probs=142.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +||+|||+|.||.+||.+|.++||+|++||+++++.....          ...|...            ..+..+.+++|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~Ga~~------------a~s~~eaa~~a   58 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAGATV------------AASPAEAAAEA   58 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcCCcc------------cCCHHHHHHhC
Confidence            4899999999999999999999999999999998843321          1234211            12234678999


Q ss_pred             CEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCCCC------CeE
Q 010966          228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHVM------PLL  295 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~~~------~lv  295 (496)
                      |+||.|||.+.++...++.  .+.+.+++++++++.| |+++   .++++.+.    -.|.+|+ .|+...      ..+
T Consensus        59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL  133 (286)
T COG2084          59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL  133 (286)
T ss_pred             CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECC-CCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence            9999999999888777774  5777788999887643 4443   35666553    2377787 466542      344


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~~~----~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      .|+.|  .+++.+++++++++.+|+.++++++. .|.   ++|+++...    +.||+.+.+ .|++++.+..++. +++
T Consensus       134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~  211 (286)
T COG2084         134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA  211 (286)
T ss_pred             EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence            45554  38999999999999999999999864 444   788888754    688998875 6999999999998 543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.74  E-value=4.4e-17  Score=162.33  Aligned_cols=187  Identities=17%  Similarity=0.303  Sum_probs=137.5

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (496)
                      ||+|||+|.||.+||..|+++|++|++||++++.++...           +.|..            ..++..+.+++||
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD   57 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD   57 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence            599999999999999999999999999999998876532           22321            1122235678999


Q ss_pred             EEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccC-cCC------CCCeEE
Q 010966          229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS-PAH------VMPLLE  296 (496)
Q Consensus       229 lVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~-P~~------~~~lve  296 (496)
                      +||+|+|++..++..++.  .+.+.+++++++++ +|+.++   .++.+.+...    |+||+. |+.      ....+.
T Consensus        58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~  132 (291)
T TIGR01505        58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS  132 (291)
T ss_pred             EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence            999999998877766553  35666788888874 444444   3566666432    566654 322      123345


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecC-ccc---chhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---~i~nril~~~----~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      ++.+  .+++.++.+.++++.+|+.++++++ .+|   +++|+++...    ++|++.+.+ .|++++++.+++. +.+
T Consensus       133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            5555  3789999999999999999999975 556   4788888765    789998875 6899999999998 544

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.72  E-value=2.9e-16  Score=156.82  Aligned_cols=188  Identities=18%  Similarity=0.274  Sum_probs=138.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      +++|+|||+|.||..+|..+++.|++|++||++++..+...           +.|             +..++++ +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence            46899999999999999999999999999999998766532           122             1223344 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeeccccC-cCCC------CC
Q 010966          226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP  293 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~~-P~~~------~~  293 (496)
                      +||+||+|+|+...++..++.  .+.+.+++++++++ +|+.++.   ++++.+...    |.||++ |+..      ..
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g  132 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG  132 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence            999999999988877665543  46677888898874 4444443   566655432    667765 3322      13


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccch---hhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K  363 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i---~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-~  363 (496)
                      .++++.+  ++++.++.+.++++.+|+.++++++ ++|+.   +|+++..    .++|++.+.+ .|++++++++++. +
T Consensus       133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~  210 (296)
T PRK11559        133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG  210 (296)
T ss_pred             cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            3556555  3689999999999999999999974 56664   7777765    3799998876 6889999999998 5


Q ss_pred             cC
Q 010966          364 FG  365 (496)
Q Consensus       364 ~g  365 (496)
                      ++
T Consensus       211 ~~  212 (296)
T PRK11559        211 LA  212 (296)
T ss_pred             cc
Confidence            44

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.71  E-value=9.4e-16  Score=151.74  Aligned_cols=155  Identities=19%  Similarity=0.219  Sum_probs=120.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +||+|||+|.||+++|..|..+|++|++||++++.++.+.           +.|.+.           ..+++.+.+++|
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a   58 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC   58 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence            4899999999999999999999999999999998876643           223221           123344567899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC------------CCCeE
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL  295 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~------------~~~lv  295 (496)
                      |+||+|+|.+..  .++++++.+.++++++|.+ +++++...+........+|+++||+.+..            ..+.+
T Consensus        59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~  135 (279)
T PRK07417         59 DLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW  135 (279)
T ss_pred             CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence            999999997653  4678899888888887754 55555555555444455799999986432            24556


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      .+++++.++++.++.+.++++.+|..++.++.
T Consensus       136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~  167 (279)
T PRK07417        136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP  167 (279)
T ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            68899999999999999999999999998863

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.63  E-value=2e-14  Score=137.42  Aligned_cols=192  Identities=20%  Similarity=0.209  Sum_probs=138.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ..++|++||+|.||++|+.+|.++||+|++||++.++.+...           +.|...            ..+..|..+
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVae   90 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVAE   90 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHHh
Confidence            467999999999999999999999999999999999877643           334211            123346678


Q ss_pred             CCCEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCccc---HHHHHhhhcCCCeeeecccc-CcCCC------CC
Q 010966          226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTID---LNLIGERTYSKDRIVGAHFF-SPAHV------MP  293 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~---~~~la~~~~~~~r~ig~hf~-~P~~~------~~  293 (496)
                      +||+||.+||...+++..++..  +.+.++++......+||++   ..+|++.+.+.    +..|. .|++.      ..
T Consensus        91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G  166 (327)
T KOG0409|consen   91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG  166 (327)
T ss_pred             hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence            9999999999998888877764  3333344433312234443   34777776432    34444 46653      23


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHHH----HHHHHHHH-HcCCCHHHHHHHHH-h
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFPY----TQAAFLLV-ERGTDLYLIDRAIT-K  363 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~~----~~ea~~l~-~~g~~~~~ID~a~~-~  363 (496)
                      .+.++.+  .+++.++...++++.+||+.+.++. +.|.   ++|+++...    +.|++.+. ..|.|+..+-+++. |
T Consensus       167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G  244 (327)
T KOG0409|consen  167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG  244 (327)
T ss_pred             eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            4556666  6899999999999999999999975 3443   788888654    58888886 47999999988887 5


Q ss_pred             cCC
Q 010966          364 FGM  366 (496)
Q Consensus       364 ~g~  366 (496)
                      -.|
T Consensus       245 ~~~  247 (327)
T KOG0409|consen  245 RCW  247 (327)
T ss_pred             Ccc
Confidence            444

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.63  E-value=8.7e-15  Score=150.34  Aligned_cols=171  Identities=21%  Similarity=0.242  Sum_probs=123.6

Q ss_pred             cceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       146 ~~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      .+++|+||| +|.||+++|..|..+|++|++||+++..  .                   .               .+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence            457999999 9999999999999999999999986310  0                   0               0225


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCCCCCeEE--EEeC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT  300 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~~~~lve--iv~~  300 (496)
                      ++||+||+|+|++.  ...++.++.+ +++++||++++|+.  ++..+.+...  .+|+|.||+.++....+..  ++..
T Consensus       141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~  215 (374)
T PRK11199        141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC  215 (374)
T ss_pred             hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence            68999999999875  5678888888 89999999998864  4567766543  3699999998775543322  4455


Q ss_pred             CCCCHHHHHHHHHHHHHcCCceEEecC-cccchhhc--hHHHH--HHHHHHHHHcCCCHHHH
Q 010966          301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNR--MFFPY--TQAAFLLVERGTDLYLI  357 (496)
Q Consensus       301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nr--il~~~--~~ea~~l~~~g~~~~~I  357 (496)
                      +.++++.++.+.++++.+|..++.++. ..+.++-.  .+-.+  +.++..+.+.+.+.+++
T Consensus       216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~  277 (374)
T PRK11199        216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL  277 (374)
T ss_pred             CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            667889999999999999999999863 34443322  22222  23344455556665554

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.63  E-value=2.6e-14  Score=140.57  Aligned_cols=185  Identities=17%  Similarity=0.126  Sum_probs=136.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (496)
                      +||+|||+|.||.+|+..|.++|+    +|+++ |++++..+...           +.|             +...++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence            589999999999999999999998    89999 99988765431           122             1223333 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT  300 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~  300 (496)
                      +.+++||+||.|++  ++...+++.++.+.++++++++|.+++++++++....+.. ++++.+|+.|......+. ++.+
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            44789999999995  4456788888888888889888999999999998877544 788888988876655444 5567


Q ss_pred             CCCCHHHHHHHHHHHHHcCCceEEecCc--------ccchhhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--------TGFAVNRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--------~G~i~nril~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      ..++++..+.++++++.+|. ++++++.        .|. ...+ ..++.+++.  ....|+++++.-+++.
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~-g~a~-~~~~~~a~~ea~~~~Gl~~~~a~~~~~  202 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGS-GPAY-IFLAIEALADGGVAAGLPRDVALSLAA  202 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcC-HHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            78899999999999999999 7776431        111 0111 122223322  4457999999888876

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.58  E-value=1.4e-13  Score=135.43  Aligned_cols=189  Identities=16%  Similarity=0.152  Sum_probs=139.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      +||+|||+|+||.+|+..|.++|+    +|+++|++++.++...+.          .|             +..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence            489999999999999999999885    699999999876653211          12             1123333 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE-eCC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN  301 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~~~  301 (496)
                      .+++||+||.|++.  ..-.++++++.+.++++++++|...++++++|.+.++.+.+++..+|+.|+.....+..+ +++
T Consensus        60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence            46899999999984  456788899988888899999999999999999998766689999999999877766654 778


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEecCcc--cc-hhhchH---HHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVGNCT--GF-AVNRMF---FPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~--G~-i~nril---~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      ..+++..+.+..+|+.+|+. +.+.+..  .+ .+.-..   ..++.|++.  .++.|++.++-.+...
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~  205 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA  205 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            88999999999999999997 4444310  00 000000   122344442  3457888777776664

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.58  E-value=1.1e-13  Score=138.01  Aligned_cols=183  Identities=19%  Similarity=0.230  Sum_probs=127.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||+|||+|.||.+||..|+++|++|++||++++.++...           +.|.             ..+++. +.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence            5899999999999999999999999999999998876532           1221             122333 45789


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCCC-------CC
Q 010966          227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV-------MP  293 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~~-------~~  293 (496)
                      ||+||.|+|++..++..++.  .+.+.++++++++. +|+.++   .++++.+...    |.+|. .|+..       ..
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~----g~~~ldapV~g~~~~a~~g~  132 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAK----GFSMMDVPVGRTSDNAITGT  132 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEccCCCCHHHHHhCc
Confidence            99999999988766654442  35556778887754 444444   3555555321    33333 24322       23


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      ++-++.+   +++.++.++++++.+|+..+++++. .|.   ++|+++..    .+.|++.+.+ .|++++.+-.++.
T Consensus       133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~  207 (296)
T PRK15461        133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS  207 (296)
T ss_pred             EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            4434333   8899999999999999999999862 232   56765543    3688888765 7999999877776

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.57  E-value=2.1e-13  Score=134.20  Aligned_cols=189  Identities=17%  Similarity=0.164  Sum_probs=134.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      |++|+|||+|.||..++..+.++|   ++|.++|++++..+...+..          |             +..+.+. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence            578999999999999999999999   78999999998766532210          1             1122333 3


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeCC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN  301 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~  301 (496)
                      .+.+||+||.|+|..  .-.++++++.+.+  +++|+|.+++++.+.+...++...+++.+||+.|......+. ++++.
T Consensus        59 ~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence            467899999999744  4567788887766  467888889999999988876667899999998876655554 56778


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEecCc--ccch-hhch---HHHHHHHHH-HH-HHcCCCHHHHHHHHH
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFA-VNRM---FFPYTQAAF-LL-VERGTDLYLIDRAIT  362 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~i-~nri---l~~~~~ea~-~l-~~~g~~~~~ID~a~~  362 (496)
                      .++++..+.+..+++.+|..+.+..+.  .... ..-.   +..++.+++ .. ...|+++++..+.+.
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~  203 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA  203 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            889999999999999999744343221  1111 1111   111233443 33 457898888777665

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.57  E-value=2.9e-14  Score=129.66  Aligned_cols=146  Identities=20%  Similarity=0.223  Sum_probs=101.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      |+||+|||+|.||+.||.+|+++|++|++||+++++++...+           .|             .+...+. +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~g-------------~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------AG-------------AEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------TT-------------EEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------hh-------------hhhhhhhhhHhh
Confidence            689999999999999999999999999999999998876532           22             3344554 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccC-cCC-------CC
Q 010966          226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS-PAH-------VM  292 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~-P~~-------~~  292 (496)
                      +||+||.|+|.+.+++ +++..  +.+.+.++.+++. +|+.++   .++++.+..    .|.||.. |+.       ..
T Consensus        57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g  130 (163)
T PF03446_consen   57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG  130 (163)
T ss_dssp             HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred             cccceEeecccchhhh-hhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence            8999999999877654 56666  8888888988874 334444   355555532    2455552 332       24


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEe
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV  325 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v  325 (496)
                      .+.-++.|   +++.++.++++++.+|+..+++
T Consensus       131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~  160 (163)
T PF03446_consen  131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHY  160 (163)
T ss_dssp             TEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred             ceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence            66667776   7899999999999999988743

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.55  E-value=2.4e-13  Score=134.64  Aligned_cols=189  Identities=15%  Similarity=0.177  Sum_probs=134.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      .+||+|||+|.||.+|+..|.++|    ++|+++|++++ .++....          +.|             +..+.+.
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~   59 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK   59 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence            469999999999999999999998    78999999764 4333211          011             1223333


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCC-eEEEEe
Q 010966          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVR  299 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~-lveiv~  299 (496)
                       +.+++||+||.||+.+  .-.+++.++.+.+.++++|+|..++++++.+.+.++...++++.||+.|..... +.-+++
T Consensus        60 ~e~~~~aDvVilav~p~--~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~  137 (279)
T PRK07679         60 KELLTDANILFLAMKPK--DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP  137 (279)
T ss_pred             HHHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence             4468999999999854  345667888887888899999889999999988776556799999987765533 444557


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecCc--c---cch--hhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---G~i--~nril~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      ++..+++..+.+.++|+.+|+.. ++.+.  .   |..  ... +..++.|++.  ....|+++++.-+++.
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~  207 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLIL  207 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            77888999999999999999844 44321  0   000  001 1223444443  3567999988888876

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.53  E-value=3.9e-13  Score=133.66  Aligned_cols=189  Identities=15%  Similarity=0.180  Sum_probs=126.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +||+|||+|.||.+||..|.++|++|++||+++. .+..           .+.|..            ...+..+.+++|
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~a   56 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEAS   56 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcC
Confidence            3799999999999999999999999999999874 2221           122311            112223456899


Q ss_pred             CEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCcccHH---HHHhhhc-CCCeeeeccccCc--C--CCCCeEEE
Q 010966          228 DMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP--A--HVMPLLEI  297 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~~~---~la~~~~-~~~r~ig~hf~~P--~--~~~~lvei  297 (496)
                      |+||.|||.+..++..++.+  +.+.+.++.+++.. ||.++.   ++++.+. +..+|+. +|+..  +  ....+.-+
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~  134 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM  134 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence            99999999887766555432  44556777777643 444443   5555543 2334444 23321  1  12344444


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHHH----HHHHHHHHH-HcCCCHHHHHHHHH-hcC
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLV-ERGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~~----~~~ea~~l~-~~g~~~~~ID~a~~-~~g  365 (496)
                      +.+   +++.++.++++++.+|+..+++++. .|.   ++|+++..    .+.|++.+. ..|++++.+-+++. +.+
T Consensus       135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~  209 (292)
T PRK15059        135 VGG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA  209 (292)
T ss_pred             EcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence            444   7899999999999999999999863 333   56676654    268888876 47999999877776 543

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.53  E-value=1.9e-13  Score=140.05  Aligned_cols=176  Identities=18%  Similarity=0.196  Sum_probs=124.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||++||..|.++|++|.+|+++++..+....         ...+..+           ..++++ +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998875443210         1112111           112333 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCC------------C
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V  291 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~------------~  291 (496)
                      ||+||+|+|.+  ....++.++.+ .++++++|++.+|+.  .++.+...+....+|+|.||+...+            .
T Consensus        61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            99999999975  46788899987 478888887666553  3345555545677999999975321            2


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec-CcccchhhchHH--HHHHHHH
Q 010966          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAF  345 (496)
Q Consensus       292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~--~~~~ea~  345 (496)
                      ....-+++++.++++.++.+.++++.+|..++.+. +....++..+..  .++.+++
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al  195 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL  195 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence            33455788888999999999999999999999885 344555443332  3444444

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.52  E-value=1.8e-14  Score=159.33  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=95.6

Q ss_pred             HHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhH
Q 010966          309 VDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA  382 (496)
Q Consensus       309 ~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~  382 (496)
                      +.+.+++..+|+.|+.+++.+|||+||++.++++||++++++|+  +++|||.+|+ |+|||+   |||+++|.+|+|.+
T Consensus       625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v  704 (737)
T TIGR02441       625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL  704 (737)
T ss_pred             HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence            34556667788888766778999999999999999999999997  9999999999 999996   99999999999999


Q ss_pred             HHhhhhhhhhCCCCccccchHHHHHhc-CCCccccCceee
Q 010966          383 IATGMQFIENFPERTYKSMIIPIMQED-KRAGETTRKGFY  421 (496)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~~l~~~~~~-G~lG~k~g~GFY  421 (496)
                      +++++.+...+++++.|++++.+|+++ |       +.||
T Consensus       705 ~~~~~~l~~~~g~~~~p~~lL~~~~~~~g-------~~f~  737 (737)
T TIGR02441       705 VDKMEKYAAAYGVQFTPCQLLLDHAKSPG-------KKFY  737 (737)
T ss_pred             HHHHHHHHHHhCCCcCCCHHHHHHHHhcC-------CCCC
Confidence            999999999999988899999999987 6       6676

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.52  E-value=3.3e-13  Score=134.23  Aligned_cols=181  Identities=20%  Similarity=0.238  Sum_probs=129.4

Q ss_pred             EEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccCCCEE
Q 010966          152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV  230 (496)
Q Consensus       152 VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV  230 (496)
                      |||+|.||.+||..|+++|++|++||++++..+...           +.|.             ..+++. +.+++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence            689999999999999999999999999998876532           1221             123333 457899999


Q ss_pred             EEeccCChHHHHHHH---HHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeeccccC-cCCC-------CCeEE
Q 010966          231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV-------MPLLE  296 (496)
Q Consensus       231 Ieav~e~~~~k~~v~---~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~~-P~~~-------~~lve  296 (496)
                      |.|||.+..+. .++   ..+.+.+++++++++. |+++++   ++++.+..    .|.+|.. |+..       ..+..
T Consensus        57 il~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~  130 (288)
T TIGR01692        57 ITMLPAGQHVI-SVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF  130 (288)
T ss_pred             EEeCCChHHHH-HHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence            99999766554 444   5677777888877644 455554   44444432    2555543 4432       34444


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      ++.+   +++.++.+.++++.+|+..+++++ ..|.   ++|+++..    .+.|++.+.+ .|++++++.+++. +.|
T Consensus       131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            4544   678899999999999999999986 4555   66777654    3689998865 7899999999998 554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.50  E-value=8.5e-13  Score=138.80  Aligned_cols=191  Identities=15%  Similarity=0.215  Sum_probs=130.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  223 (496)
                      .+++|+|||+|.||.+||.+|+++|++|++||+++++.+...+..       ...|..          .+....+.++  
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence            456899999999999999999999999999999999887654210       001210          1112333332  


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeecccc-CcCC-------C
Q 010966          224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFF-SPAH-------V  291 (496)
Q Consensus       224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~-~P~~-------~  291 (496)
                        ++.+|+||.|||.+..+. +++..+.+.+.++.|++..+++-  ...++++.+..    -|.||+ .|+.       .
T Consensus        68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~  142 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARN  142 (493)
T ss_pred             hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcC
Confidence              345999999999887654 55677888888888777543332  23355555532    256665 3443       2


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHcCCc------eEEecC-cccc---hhhchHH-H---HHHHHHHHHHc--CCCHH
Q 010966          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVNRMFF-P---YTQAAFLLVER--GTDLY  355 (496)
Q Consensus       292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~---i~nril~-~---~~~ea~~l~~~--g~~~~  355 (496)
                      ++  .+++|  .++++++.++++++.++..      ..++++ +.|.   ++|+.+. .   .+.|++.+.+.  |++++
T Consensus       143 G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~  218 (493)
T PLN02350        143 GP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNE  218 (493)
T ss_pred             CC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence            34  45555  4889999999999999954      777876 2333   4555443 3   36899988764  88999


Q ss_pred             HHHHHHH
Q 010966          356 LIDRAIT  362 (496)
Q Consensus       356 ~ID~a~~  362 (496)
                      ++-+++.
T Consensus       219 ~l~~vf~  225 (493)
T PLN02350        219 ELAEVFA  225 (493)
T ss_pred             HHHHHHH
Confidence            9988853

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.50  E-value=1.1e-12  Score=129.67  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=110.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.||+++|..|.++|+  +|++||++++.++.+.           +.|...            ...+.+++.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~   57 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELK   57 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHh
Confidence            389999999999999999999996  7999999998766532           223211            122333455


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHHHhhhcCCCeeeeccccC------cCC------CC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFS------PAH------VM  292 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~la~~~~~~~r~ig~hf~~------P~~------~~  292 (496)
                      +||+||.|+|.+.  ..+++.++.+ ++++++|++.+|+.+ +.+..... .+.+|++.||+.      |..      ..
T Consensus        58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            6999999999654  4567788888 888888887555432 22222211 235799999984      322      24


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ..+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            46677888888999999999999999999999873

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.49  E-value=1.6e-12  Score=136.25  Aligned_cols=154  Identities=19%  Similarity=0.172  Sum_probs=119.7

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      |||+||| +|.||+++|..|..+|++|+++|++++.......          +.|             +..+++. +.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence            4899998 7999999999999999999999999876533211          112             1123333 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeeccccCc----CCCCCeEEEEe
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR  299 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~~P----~~~~~lveiv~  299 (496)
                      +||+||.|+|.+  ....++.++.+.++++++|++.+|+  .+.+.+.+.++...+|++.||+..    ......+.+++
T Consensus        58 ~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            999999999965  3457889999889999999888774  455666666655568999998743    33456777888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      ++.++++.++.+.++++.+|..++.+.
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~  162 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVTS  162 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            888899999999999999999988875

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.47  E-value=1.4e-12  Score=127.90  Aligned_cols=156  Identities=18%  Similarity=0.221  Sum_probs=117.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC--cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~  222 (496)
                      .++|+|+|+|.||+++|..+..+|+.|.+++++.+  .++.+           .+.|....           .+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence            46999999999999999999999998866666654  33332           12332221           1122  35


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCC------CCCe
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH------VMPL  294 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~------~~~l  294 (496)
                      .+.++|+||.|||-  ..-.++++++.+.++++++|+..+|+..  ++.+.+..+...+|+|.||+..++      ....
T Consensus        61 ~~~~aD~VivavPi--~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVPI--EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEeccH--HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            67889999999984  4566889999999999999999988763  455555543323899999997662      2355


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +-+++++.++.+.+..+.++++.+|..++.+.
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~  170 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD  170 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            66789988999999999999999999888885

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.46  E-value=2.1e-12  Score=135.61  Aligned_cols=189  Identities=14%  Similarity=0.171  Sum_probs=131.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc---
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---  223 (496)
                      |.+|+|||+|.||++||.+|+++|++|++||++++..+...+...       ..|.           .+..+.++++   
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~   62 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN   62 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence            358999999999999999999999999999999998876543100       0121           1223445433   


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH--HHHhhhcCCCeeeecccc-CcCCC-------C
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------M  292 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~--~la~~~~~~~r~ig~hf~-~P~~~-------~  292 (496)
                       ++++|+||.+|+.... ..+++.++.+.+.++.||+..+++.+.+  +..+.+..    -|.||+ .|+..       +
T Consensus        63 ~l~~~d~Iil~v~~~~~-v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~----~Gi~fldapVSGG~~gA~~G  137 (470)
T PTZ00142         63 SLKKPRKVILLIKAGEA-VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE----KGILYLGMGVSGGEEGARYG  137 (470)
T ss_pred             cCCCCCEEEEEeCChHH-HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEcCCCCCCHHHHhcC
Confidence             3368999999987654 4567788999999999887665554333  34444321    266666 35443       3


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCc------eEEecC-cccc---hhh-chHHH---HHHHHHHHHH--cCCCHHH
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVN-RMFFP---YTQAAFLLVE--RGTDLYL  356 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~---i~n-ril~~---~~~ea~~l~~--~g~~~~~  356 (496)
                      +  .+++|  .++++++.++++++.++..      ..++++ +.|.   +++ -+...   .+.|++.+.+  .|+++++
T Consensus       138 ~--~lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~  213 (470)
T PTZ00142        138 P--SLMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEE  213 (470)
T ss_pred             C--EEEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence            4  35555  3789999999999999987      577775 3443   344 44443   3689999875  6889999


Q ss_pred             HHHHHH
Q 010966          357 IDRAIT  362 (496)
Q Consensus       357 ID~a~~  362 (496)
                      +-.++.
T Consensus       214 l~~v~~  219 (470)
T PTZ00142        214 LSEVFN  219 (470)
T ss_pred             HHHHHH
Confidence            988885

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.45  E-value=5.3e-12  Score=126.10  Aligned_cols=189  Identities=10%  Similarity=0.080  Sum_probs=125.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      |||+|||+|.||.+||..|+++|++|++||++++.++...+           .|.....          ...++ +.+.+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~~----------s~~~~~~~~~~   59 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGVA----------NLRELSQRLSA   59 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcccC----------CHHHHHhhcCC
Confidence            48999999999999999999999999999999988766432           2211100          00111 23567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhc-CCCeeeeccccCcCC--CCCeEEEEeCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH--VMPLLEIVRTN  301 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~-~~~r~ig~hf~~P~~--~~~lveiv~~~  301 (496)
                      +|+||.|+|.+  .-.+++.++.+.++++.+|++.+++.  ...++.+.+. ...+|+..+...++.  ...+ .++.+ 
T Consensus        60 ~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~-~~~~g-  135 (298)
T TIGR00872        60 PRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGY-CFMIG-  135 (298)
T ss_pred             CCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-eeeeC-
Confidence            99999999987  45677888988888888887655543  3334444442 223444443332111  1123 33333 


Q ss_pred             CCCHHHHHHHHHHHHHcCC---ceEEecCc-ccc---hhhchH-HH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 010966          302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMF-FP---YTQAAFLLVER-G--TDLYLIDRAIT  362 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~nril-~~---~~~ea~~l~~~-g--~~~~~ID~a~~  362 (496)
                       .+++.++.+.++++.++.   ..+++++. .|.   ++++.+ ..   .+.|++.+++. |  ++++++-++|+
T Consensus       136 -G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~  209 (298)
T TIGR00872       136 -GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR  209 (298)
T ss_pred             -CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence             378999999999999986   46777752 332   344444 33   35788888875 4  59999999987

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.45  E-value=2e-12  Score=135.07  Aligned_cols=202  Identities=15%  Similarity=0.172  Sum_probs=130.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~  221 (496)
                      |||+|||+|.||.++|..|+.+|++|++||++++.++...+...          .+.+...+..      .++++.++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~----------~~~e~~l~~~~~~~~~~g~l~~~~~~   70 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS----------PIYEPGLDELLAKALAAGRLRATTDY   70 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC----------CCCCCCHHHHHHHhhhcCCeEEECCH
Confidence            48999999999999999999999999999999998776432100          0000011111      1346666776


Q ss_pred             c-cccCCCEEEEeccCChH--------HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhh-cC--CCe-eeecc-
Q 010966          222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERT-YS--KDR-IVGAH-  284 (496)
Q Consensus       222 ~-~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~-~~--~~r-~ig~h-  284 (496)
                      + .+++||+||.|||....        ....+...+.+.++++++++. +||+++   .++...+ ..  ..+ ....+ 
T Consensus        71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v  149 (411)
T TIGR03026        71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYL  149 (411)
T ss_pred             HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence            5 58899999999997642        345566778888888887764 445533   3443222 11  000 11111 


Q ss_pred             ccCcCCCCC--e-------EEEEeCCCCCHHHHHHHHHHHHHcC-CceEEecCc-cc---chhhchH----HHHHHHHHH
Q 010966          285 FFSPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFL  346 (496)
Q Consensus       285 f~~P~~~~~--l-------veiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~-~G---~i~nril----~~~~~ea~~  346 (496)
                      -++|....+  +       -.++.+  .+++..+.+.++++.++ +.++++++. .+   -++++++    ..+++|++.
T Consensus       150 ~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~  227 (411)
T TIGR03026       150 AYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELAR  227 (411)
T ss_pred             EECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            113432211  1       134555  48999999999999998 577777652 22   2456665    356899998


Q ss_pred             HHH-cCCCHHHHHHHHH
Q 010966          347 LVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       347 l~~-~g~~~~~ID~a~~  362 (496)
                      +.+ .|++++++-+++.
T Consensus       228 la~~~GiD~~~v~~~~~  244 (411)
T TIGR03026       228 ICEALGIDVYEVIEAAG  244 (411)
T ss_pred             HHHHhCCCHHHHHHHhC
Confidence            875 6999999988886

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.44  E-value=4.1e-12  Score=127.56  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=115.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      .+++|+|||+|.||.++|..|...|+  +|++||++++.++.+.           +.|...           ....+. +
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~   62 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE   62 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence            35799999999999999999999995  8999999998766542           123110           112233 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCCC---------
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV---------  291 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~~---------  291 (496)
                      .+++||+||.|+|..  ....++.++.+.++++++|++.+|..  .+..+...+....+|++.||+.+.+.         
T Consensus        63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~  140 (307)
T PRK07502         63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE  140 (307)
T ss_pred             HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence            578999999999864  34677888888888888876554432  23344444444558999999975321         


Q ss_pred             ---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                         ...+.+++...++++.++.+.++++.+|..++.+.
T Consensus       141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~  178 (307)
T PRK07502        141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD  178 (307)
T ss_pred             HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence               23345777778899999999999999999998886

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.43  E-value=9.4e-12  Score=124.56  Aligned_cols=183  Identities=19%  Similarity=0.150  Sum_probs=125.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F--  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~--  224 (496)
                      ++|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|.             ...++.++ +  
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~   56 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK   56 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence            3899999999999999999999999999999998876532           1221             12223322 2  


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeecccc-CcCCCC------Ce
Q 010966          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHVM------PL  294 (496)
Q Consensus       225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~-~P~~~~------~l  294 (496)
                       .++|+||.++|.+..+ .+++..+.+.++++.++++.+++.+  ..++++.+...    |.+|. .|+...      .+
T Consensus        57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~  131 (301)
T PRK09599         57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGY  131 (301)
T ss_pred             cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCC
Confidence             2479999999976444 4566778788888887765443333  33455554322    45554 243321      23


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCC----ceEEecCc-ccc---hhhchHH-H---HHHHHHHHHH---cCCCHHHHHH
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNRMFF-P---YTQAAFLLVE---RGTDLYLIDR  359 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~-~G~---i~nril~-~---~~~ea~~l~~---~g~~~~~ID~  359 (496)
                       .++.+  .++++++.++++++.+++    ..+++++. .|.   ++|+.+. .   .+.|++.+.+   .|++++++-+
T Consensus       132 -~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~  208 (301)
T PRK09599        132 -CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAE  208 (301)
T ss_pred             -eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence             34444  488999999999999998    78888862 333   4455443 3   2578888875   5789999999


Q ss_pred             HHH
Q 010966          360 AIT  362 (496)
Q Consensus       360 a~~  362 (496)
                      +|.
T Consensus       209 ~~~  211 (301)
T PRK09599        209 VWR  211 (301)
T ss_pred             HHh
Confidence            998

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.43  E-value=3.3e-14  Score=148.33  Aligned_cols=159  Identities=17%  Similarity=0.132  Sum_probs=119.8

Q ss_pred             eEEEEEeCChhhHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      .||+|||+|.||.+.+.  .+    +.+|++|++||++++.++.....+.+.+.    ...        ...++..++|+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~   68 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR   68 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence            38999999999998665  23    45688999999999998876655543332    111        11467778885


Q ss_pred             -ccccCCCEEEEecc----------CChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcC--CCeeeeccccCc
Q 010966          222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP  288 (496)
Q Consensus       222 -~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~--~~r~ig~hf~~P  288 (496)
                       +++++||+||++++          |+..+|..+++++.+.+++++++.+++|...+.+++..+..  | +.+.+||+||
T Consensus        69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP  147 (423)
T cd05297          69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP  147 (423)
T ss_pred             HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence             67899999999998          35889999999999999999999999999999999998863  7 8999999999


Q ss_pred             CCCC-----CeE--EEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010966          289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKTP  322 (496)
Q Consensus       289 ~~~~-----~lv--eiv~~~~t~~e~~~~~~~l~~~lGk~~  322 (496)
                      +..+     +..  -++..   ..........+.+.+|..+
T Consensus       148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCCH
Confidence            8654     222  23322   2225555666777777643

linked to 3D####ucture

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.42  E-value=2.9e-12  Score=123.79  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=124.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-c
Q 010966          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-Y  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~  221 (496)
                      ++||+|||+|+||.+|+..|.++|    .+|++.+++++..+...++          -|            ..+ +++ .
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g------------~~~-~~~~~   57 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YG------------VVT-TTDNQ   57 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cC------------Ccc-cCcHH
Confidence            368999999999999999999999    5899999999987643221          11            112 333 3


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE-eC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RT  300 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~~  300 (496)
                      +.+..+|+||.||.  +....+++.++.. ..++.+|+|...+++++.|...++ ..+++..+|+.|......+..+ .+
T Consensus        58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~  133 (266)
T COG0345          58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN  133 (266)
T ss_pred             HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence            56788999999994  5567788888887 778999999999999999999998 7789999999998877766655 66


Q ss_pred             CCCCHHHHHHHHHHHHHcCCceEEe
Q 010966          301 NQTSPQVIVDLLDIGKKIKKTPIVV  325 (496)
Q Consensus       301 ~~t~~e~~~~~~~l~~~lGk~~v~v  325 (496)
                      ...+++..+.+.++++.+|+...+-
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~v~~v~  158 (266)
T COG0345         134 ANVSEEDKAFVEALLSAVGKVVEVE  158 (266)
T ss_pred             ccCCHHHHHHHHHHHHhcCCeEEec
Confidence            8899999999999999999866554

>PLN02256 arogenate dehydrogenase

Probab=99.42  E-value=5.7e-12  Score=125.66  Aligned_cols=153  Identities=13%  Similarity=0.064  Sum_probs=111.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c-
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-  224 (496)
                      .++|+|||+|.||+++|..+.+.|++|+++|+++.. +.+.           +.|.             ...++.++ + 
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~   90 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE   90 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence            468999999999999999999999999999998632 1111           1121             12233333 3 


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHH-HhhCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeeccccCcCCCC------CeE
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL  295 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~~P~~~~------~lv  295 (496)
                      .++|+||.|+|..  ...+++.++ ...++++++|++.+|+  .+++.+...++...+|+|.||+.++...      .-+
T Consensus        91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~  168 (304)
T PLN02256         91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF  168 (304)
T ss_pred             CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence            4699999999854  456777887 5667899999988884  5567777776555689999999876532      111


Q ss_pred             EEEeC----CCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       296 eiv~~----~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      -+.+.    +.++++.++.+.++++.+|..++.+.
T Consensus       169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            12221    56788999999999999999999985

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.41  E-value=9.8e-12  Score=124.28  Aligned_cols=183  Identities=16%  Similarity=0.146  Sum_probs=124.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-  225 (496)
                      ++|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|.             +...+.++ ++ 
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~   56 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSK   56 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHh
Confidence            3799999999999999999999999999999998766532           1221             12333333 33 


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccC-cCCCC------Ce
Q 010966          226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFS-PAHVM------PL  294 (496)
Q Consensus       226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~-P~~~~------~l  294 (496)
                        .+|+||.|+|.+..+ .+++..+.+.++++.+++..+++-  ...++++.+...    |.+|.. |+...      ..
T Consensus        57 ~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~  131 (299)
T PRK12490         57 LEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGY  131 (299)
T ss_pred             CCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCC
Confidence              379999999987544 456677877777887776443322  334555555321    445543 33321      22


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCC---ceEEecCc-ccc---hhhchHHH----HHHHHHHHHH-cC--CCHHHHHHH
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RG--TDLYLIDRA  360 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~nril~~----~~~ea~~l~~-~g--~~~~~ID~a  360 (496)
                      . ++.+  .++++++.++++++.+|.   ..+++++. .|.   ++|+++..    .+.|++.+.+ .|  ++++++-++
T Consensus       132 ~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~  208 (299)
T PRK12490        132 C-LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL  208 (299)
T ss_pred             e-EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence            3 3333  378899999999999997   67888762 222   55665543    3689999886 56  799998888


Q ss_pred             HH
Q 010966          361 IT  362 (496)
Q Consensus       361 ~~  362 (496)
                      |.
T Consensus       209 ~~  210 (299)
T PRK12490        209 WR  210 (299)
T ss_pred             Hc
Confidence            87

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.40  E-value=1.5e-11  Score=121.51  Aligned_cols=153  Identities=15%  Similarity=0.082  Sum_probs=118.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      |++|+|||+|.||.+|+..|.++|    ++|++|+++++. ++...           ..           ......+.+.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence            468999999999999999999998    789999987532 22211           00           0112223343


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE-e
Q 010966          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R  299 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~  299 (496)
                       +.++++|+||.|+|.  ..-.+++.++.++++++++|+|.+.++++++|.+.++. .+++.++|+.|+.....+..+ .
T Consensus        59 ~e~~~~aDvVilavpp--~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~  135 (277)
T PRK06928         59 AEIFTKCDHSFICVPP--LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH  135 (277)
T ss_pred             HHHHhhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence             346899999999984  34567888888888888889999999999999998753 489999999998877666655 6


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEE
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIV  324 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~  324 (496)
                      ++..+++..+.+..+|+.+|+...+
T Consensus       136 ~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        136 AETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            6778999999999999999987654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.40  E-value=2.1e-11  Score=127.05  Aligned_cols=198  Identities=14%  Similarity=0.177  Sum_probs=127.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhh------hcceecc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKT------ISLLTGV  218 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~------~~~i~~~  218 (496)
                      ++||+|||+|.||.++|..|+.+|++|++||++++.++...            .|.+.  +...+..      .+++..+
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~------------~g~~~~~e~~l~~~l~~~~~~g~l~~~   70 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN------------RGEIHIVEPDLDMVVKTAVEGGYLRAT   70 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH------------CCCCCcCCCCHHHHHHHHhhcCceeee
Confidence            57999999999999999999999999999999999877632            12111  0011111      1234444


Q ss_pred             cCcccccCCCEEEEeccCC--------hHHHHHHHHHHHhhCCCCeeEeccCCccc---HHHHHhhhcCC-Ce--e--e-
Q 010966          219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYSK-DR--I--V-  281 (496)
Q Consensus       219 ~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~~~---~~~la~~~~~~-~r--~--i-  281 (496)
                      ++   +++||+||.|||..        ......+.+.+.++++++++++.. ||.+   ..++...+... ..  +  - 
T Consensus        71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~  146 (415)
T PRK11064         71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQA  146 (415)
T ss_pred             cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccc
Confidence            43   45899999999974        244456678888889998877643 3333   33444333210 00  0  0 


Q ss_pred             --ecc---ccCcC--CCCCeE-------EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHH----H
Q 010966          282 --GAH---FFSPA--HVMPLL-------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----P  339 (496)
Q Consensus       282 --g~h---f~~P~--~~~~lv-------eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~----~  339 (496)
                        +..   -++|-  ..+..+       -++.+  .+++..+.+.++++.++..++++++. .+.   ++++.+.    +
T Consensus       147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia  224 (415)
T PRK11064        147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA  224 (415)
T ss_pred             cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence              001   13452  111111       34544  47899999999999999877777652 222   4565554    4


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          340 YTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       340 ~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      ++||++.+.+ .|+|+.++-+++.
T Consensus       225 ~~nE~~~lae~~GiD~~~v~~~~~  248 (415)
T PRK11064        225 FANELSLICADQGINVWELIRLAN  248 (415)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHhc
Confidence            5799988875 6999999988775

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.38  E-value=5.2e-13  Score=147.85  Aligned_cols=88  Identities=22%  Similarity=0.283  Sum_probs=82.9

Q ss_pred             CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCcccc
Q 010966          327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS  400 (496)
Q Consensus       327 d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~  400 (496)
                      ..+||++||++.++++||++++++|+  +++|||.+|+ |+|||+   |||+++|.+|+|.++++++.++..+++++.|+
T Consensus       613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~  692 (708)
T PRK11154        613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC  692 (708)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence            36899999999999999999999996  9999999999 999997   99999999999999999999999999988899


Q ss_pred             chHHHHHhcCCCccccCceee
Q 010966          401 MIIPIMQEDKRAGETTRKGFY  421 (496)
Q Consensus       401 ~~l~~~~~~G~lG~k~g~GFY  421 (496)
                      +++.+|+++|       ++||
T Consensus       693 ~~l~~~~~~~-------~~f~  706 (708)
T PRK11154        693 ERLVEMAERG-------ESFY  706 (708)
T ss_pred             HHHHHHHHcC-------CCCC
Confidence            9999999986       7786

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.38  E-value=2.8e-11  Score=122.39  Aligned_cols=205  Identities=16%  Similarity=0.097  Sum_probs=135.1

Q ss_pred             hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccCCCEEEEeccCC
Q 010966          159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN  237 (496)
Q Consensus       159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~  237 (496)
                      |.+||..|+.+||+|++||++++.++...      .+.....|             ++.+++. +.+++||+||.|+|..
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~   92 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG   92 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence            89999999999999999999998654311      11111222             2333343 5578999999999976


Q ss_pred             hHHHHHHHHHHHhhCCCCeeEeccCCcccHH----HHHhhhcCCCeeeeccccCcCCC----CCeEEEEeCC------CC
Q 010966          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT  303 (496)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~----~la~~~~~~~r~ig~hf~~P~~~----~~lveiv~~~------~t  303 (496)
                      . ..++++..+.+.++++++|++ +|+.+..    .+...+..+.+.+|.||+.|...    ...++++.+.      ..
T Consensus        93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~  170 (342)
T PRK12557         93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA  170 (342)
T ss_pred             H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence            4 456788889999999988774 4555444    34455554556778888876542    2234455443      34


Q ss_pred             CHHHHHHHHHHHHHcCCceEEecCcccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcCCCcchhHhh
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFGMPMGPFRLA  374 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~---i~nril~~~----~~ea~~l~~-~g~~~~~ID~a~~-~~g~p~GPf~l~  374 (496)
                      +++.++.+.++++.+|+.+++++...|.   .+|+++.+.    ..|++.+.+ .|.+|.+.-+-+. ..  -.|--.++
T Consensus       171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~  248 (342)
T PRK12557        171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV  248 (342)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence            8999999999999999999888753333   356666554    577777765 4556655444332 21  12566666


Q ss_pred             hccCchhHHHhh
Q 010966          375 DLVGFGVAIATG  386 (496)
Q Consensus       375 D~~Gld~~~~~~  386 (496)
                      -..|+|...+.+
T Consensus       249 ~~~~~~~~~~~~  260 (342)
T PRK12557        249 ETSGVDGLLKAL  260 (342)
T ss_pred             HHhChHHHHHhc
Confidence            667777666544

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.38  E-value=5.9e-13  Score=147.09  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=82.4

Q ss_pred             CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCcccc
Q 010966          327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS  400 (496)
Q Consensus       327 d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~  400 (496)
                      ..+||++||++.++++||++++++|+  +++|||.+|+ |+|||+   |||+++|.+|+|.++++++.++..+++++.|+
T Consensus       606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~  685 (699)
T TIGR02440       606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC  685 (699)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence            36899999999999999999999996  9999999999 999995   99999999999999999999999999988899


Q ss_pred             chHHHHHhcCCCccccCceee
Q 010966          401 MIIPIMQEDKRAGETTRKGFY  421 (496)
Q Consensus       401 ~~l~~~~~~G~lG~k~g~GFY  421 (496)
                      +++.+|+++|       +.||
T Consensus       686 ~~L~~~~~~~-------~~f~  699 (699)
T TIGR02440       686 QRLVAMAAEK-------QSFY  699 (699)
T ss_pred             HHHHHHHHcC-------CCcC
Confidence            9999999986       6686

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK07680 late competence protein ComER; Validated

Probab=99.37  E-value=3.8e-11  Score=118.54  Aligned_cols=152  Identities=13%  Similarity=0.064  Sum_probs=110.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      ++|+|||+|.||.+|+..|.++|+    +|+++|++++..+...++          .            ..+..+.+. +
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~   58 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEE   58 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHH
Confidence            379999999999999999999984    799999999876543210          0            012233343 3


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCe-EEEEeCC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTN  301 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~  301 (496)
                      .+.++|+||.|++.  ..-.++++++.+++.++++|+|.+++++++.+...++  .+.+..+|..|...... .-++.++
T Consensus        59 ~~~~aDiVilav~p--~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~  134 (273)
T PRK07680         59 VISQSDLIFICVKP--LDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS  134 (273)
T ss_pred             HHHhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence            47899999999973  3456788888888888888889899999999988765  34566666555322222 2344566


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEec
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      ..+++..+.+.+++..+|. ++.+.
T Consensus       135 ~~~~~~~~~~~~ll~~~G~-~~~i~  158 (273)
T PRK07680        135 RCSEEDQQKLERLFSNIST-PLVIE  158 (273)
T ss_pred             CCCHHHHHHHHHHHHcCCC-EEEEC
Confidence            6788889999999999995 55554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.35  E-value=4e-11  Score=121.27  Aligned_cols=196  Identities=15%  Similarity=0.114  Sum_probs=121.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcceecccCcc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~  224 (496)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++...+.           +..... .-......+..+++.+ .+
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGIKLPDNLRATTDLAEAL   69 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCCcCCCCeEEeCCHHHHH
Confidence            4689999999999999999999999999999999877654321           100000 0000011234445553 56


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-------HHHhhhcCCCeeeeccccCcCC------C
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFFSPAH------V  291 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-------~la~~~~~~~r~ig~hf~~P~~------~  291 (496)
                      ++||+||.|+|..  ....++.++.+.+++++++++.+++++..       .+.+........  .....|..      .
T Consensus        70 ~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g  145 (325)
T PRK00094         70 ADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARG  145 (325)
T ss_pred             hCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcC
Confidence            8999999999974  46788888988888899888776555542       222222210010  11112332      1


Q ss_pred             C-CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc---------------------hhhchHH----HHHHHHH
Q 010966          292 M-PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF---------------------AVNRMFF----PYTQAAF  345 (496)
Q Consensus       292 ~-~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~---------------------i~nril~----~~~~ea~  345 (496)
                      . .++.+ .+  .+.+.++.+.++++..|..+....|..|.                     +.++.+.    ..++|++
T Consensus       146 ~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~  222 (325)
T PRK00094        146 LPTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEIT  222 (325)
T ss_pred             CCcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            1 22333 32  37888999999999999877776654331                     2233332    2357777


Q ss_pred             HHHH-cCCCHHHHHHH
Q 010966          346 LLVE-RGTDLYLIDRA  360 (496)
Q Consensus       346 ~l~~-~g~~~~~ID~a  360 (496)
                      .+.+ .|++++.+...
T Consensus       223 ~la~~~G~d~~~~~~~  238 (325)
T PRK00094        223 RLGVALGANPETFLGL  238 (325)
T ss_pred             HHHHHhCCChhhhhcc
Confidence            7654 67777666544

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.35  E-value=1.5e-11  Score=126.76  Aligned_cols=199  Identities=17%  Similarity=0.238  Sum_probs=120.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      |||+|||+|.||.++|..++. ||+|++||+++++++...+.+...++..++.      .......+++.+++. +.+++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence            489999999999999988874 9999999999999887654322111111110      000012345555554 45789


Q ss_pred             CCEEEEeccCChHHH---------HHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccCcCCCC--
Q 010966          227 VDMVIEAIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAHVM--  292 (496)
Q Consensus       227 aDlVIeav~e~~~~k---------~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~P~~~~--  292 (496)
                      ||+||+|||++.+.|         .++++.+.+ ++++.+++. .||+++   +++...+..    .++.| +|....  
T Consensus        74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~~----~~v~~-~PE~l~~G  146 (388)
T PRK15057         74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYRT----ENIIF-SPEFLREG  146 (388)
T ss_pred             CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhhc----CcEEE-CcccccCC
Confidence            999999999874433         345566766 577776653 444443   355544321    13333 554322  


Q ss_pred             CeE-------EEEeCCCCCHHHHHHHHHHHHH--cCC-ceEEecCc-ccc---hhhchHH----HHHHHHHHHHH-cCCC
Q 010966          293 PLL-------EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTD  353 (496)
Q Consensus       293 ~lv-------eiv~~~~t~~e~~~~~~~l~~~--lGk-~~v~v~d~-~G~---i~nril~----~~~~ea~~l~~-~g~~  353 (496)
                      .++       -++.|.  +++..+.+.+++..  ++. .++++.+. .+.   ++++++.    +++||...+.+ .|+|
T Consensus       147 ~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD  224 (388)
T PRK15057        147 KALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLN  224 (388)
T ss_pred             cccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            110       133332  34566777777754  554 34345542 232   4555554    45799988865 6999


Q ss_pred             HHHHHHHHH
Q 010966          354 LYLIDRAIT  362 (496)
Q Consensus       354 ~~~ID~a~~  362 (496)
                      ++++-+++.
T Consensus       225 ~~eV~~a~~  233 (388)
T PRK15057        225 TRQIIEGVC  233 (388)
T ss_pred             HHHHHHHhc
Confidence            999999884

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.35  E-value=3e-11  Score=120.67  Aligned_cols=184  Identities=17%  Similarity=0.115  Sum_probs=127.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|||.|.||.++|..|..+|++|++++++.+......          .+.|             +...+..+.++.|
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A   74 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA   74 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence            6899999999999999999999999999988754332211          1112             1122223557899


Q ss_pred             CEEEEeccCChHHHHHHH-HHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC-------CCCeEE-EE
Q 010966          228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-IV  298 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~-------~~~lve-iv  298 (496)
                      |+|+.++|....  ..++ +++.+.++++++| +-.+++++..+....+...+++.++|..|.+       .+..+. ++
T Consensus        75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~  151 (330)
T PRK05479         75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI  151 (330)
T ss_pred             CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence            999999996543  6777 7798899999988 7888999988766655556789999999987       333333 33


Q ss_pred             -eCCCCCHHHHHHHHHHHHHcCCceE-----EecC-c-ccchh-hchH----HHHHHHHHHH-HHcCCCHHHH
Q 010966          299 -RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGFAV-NRMF----FPYTQAAFLL-VERGTDLYLI  357 (496)
Q Consensus       299 -~~~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-~G~i~-nril----~~~~~ea~~l-~~~g~~~~~I  357 (496)
                       .+...+.+..+.+..++..+|..+.     .+++ . ...+. .-++    ..++..++.. ++.|.+|+..
T Consensus       152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A  224 (330)
T PRK05479        152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA  224 (330)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence             4555678899999999999998876     3432 1 11111 1222    2345555554 5678877653

>PLN02858 fructose-bisphosphate aldolase

Probab=99.35  E-value=2.6e-11  Score=141.89  Aligned_cols=186  Identities=16%  Similarity=0.146  Sum_probs=133.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||.+||.+|+++||+|++||+++++.+...           +.|.             ...++. +.+++
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~~~s~~e~a~~   60 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGG-------------HRCDSPAEAAKD   60 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhc
Confidence            5899999999999999999999999999999998877643           2232             122333 45678


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeee--cccc-CcCCC-------
Q 010966          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAHV-------  291 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig--~hf~-~P~~~-------  291 (496)
                      ||+||.|+|++..++..++  ..+.+.+.++.+++. +||++++   ++++.+...    |  .+|. .|+..       
T Consensus        61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~~  135 (1378)
T PLN02858         61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLLN  135 (1378)
T ss_pred             CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHhc
Confidence            9999999999887765554  346666778877754 3455443   555555322    3  4454 34432       


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEe-cC-cccc---hhhchHHH----HHHHHHHHH-HcCCCHHHHHHHH
Q 010966          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLV-ERGTDLYLIDRAI  361 (496)
Q Consensus       292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d-~~G~---i~nril~~----~~~ea~~l~-~~g~~~~~ID~a~  361 (496)
                      +.|+-++.|   +++.++.+.++++.+|+..+++ ++ +.|.   ++|+++..    .+.||+.+. ..|++++.+-+++
T Consensus       136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl  212 (1378)
T PLN02858        136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII  212 (1378)
T ss_pred             CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            455556565   7889999999999999988765 54 3343   66777654    368898886 4799999999999


Q ss_pred             H-hcC
Q 010966          362 T-KFG  365 (496)
Q Consensus       362 ~-~~g  365 (496)
                      . +.|
T Consensus       213 ~~s~g  217 (1378)
T PLN02858        213 SNAAG  217 (1378)
T ss_pred             hcCCc
Confidence            8 654

>PLN02858 fructose-bisphosphate aldolase

Probab=99.34  E-value=3.7e-11  Score=140.64  Aligned_cols=190  Identities=19%  Similarity=0.207  Sum_probs=132.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      .+++|+|||+|.||.+||..|+.+|++|++||+++++.+...           +.|..             ...+. +.+
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~  378 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVA  378 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHH
Confidence            458999999999999999999999999999999998876532           22311             12233 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeecccc-CcCCC-------
Q 010966          225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------  291 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~-~P~~~-------  291 (496)
                      ++||+||.|||...+++..++.  .+.+.+.++.+++. +||+++.   ++++.+..  .-.|.+|. .|+..       
T Consensus       379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~  455 (1378)
T PLN02858        379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM  455 (1378)
T ss_pred             hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence            8999999999987766655543  35556677777663 3444443   55555432  01356665 34432       


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc--c---hhhchHHH----HHHHHHHHH-HcCCCHHHHHHHH
Q 010966          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLV-ERGTDLYLIDRAI  361 (496)
Q Consensus       292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nril~~----~~~ea~~l~-~~g~~~~~ID~a~  361 (496)
                      ..+.-++.|   +++.++.+.++++.+|+..+++...+|  .   ++|+++..    .+.|++.+. ..|++++.+-+++
T Consensus       456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl  532 (1378)
T PLN02858        456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII  532 (1378)
T ss_pred             CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            345555555   678999999999999998877543234  2   66777654    368888876 4799999998888


Q ss_pred             H-hcC
Q 010966          362 T-KFG  365 (496)
Q Consensus       362 ~-~~g  365 (496)
                      . +.|
T Consensus       533 ~~s~g  537 (1378)
T PLN02858        533 SNAGG  537 (1378)
T ss_pred             Hhhcc
Confidence            7 544

>PLN02888 enoyl-CoA hydratase

Probab=99.31  E-value=8e-12  Score=122.62  Aligned_cols=100  Identities=25%  Similarity=0.293  Sum_probs=87.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++.+.+.++|++++..+ |.                                  
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  207 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-QG----------------------------------  207 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhhcCCCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVPG  136 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~--~s~~a~~~i~aF~~kr~~~~~~~  136 (496)
                       +...+|++++.....++++++..|...+..++  .++++++++++|++||+++|.++
T Consensus       208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~  264 (265)
T PLN02888        208 -MVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK  264 (265)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence             33478899988888889999999988888875  59999999999999999988654

>PLN02600 enoyl-CoA hydratase

Probab=99.30  E-value=7.3e-12  Score=121.98  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=86.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-p~----------------------------------  196 (251)
T PLN02600        152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG-PL----------------------------------  196 (251)
T ss_pred             HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+.++.|...+..++.++++++++++|++||+++
T Consensus       197 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~  247 (251)
T PLN02600        197 -AIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV  247 (251)
T ss_pred             -HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence             334788999888888899999999999999999999999999999998754

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.30  E-value=1.3e-10  Score=113.82  Aligned_cols=182  Identities=13%  Similarity=0.068  Sum_probs=122.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      +||+|||+|.||.+|+..|.++|++   |.++|++++..+...+.          .            .....+.+. +.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~------------~~~~~~~~~~~~   58 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------F------------PKVRIAKDNQAV   58 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------c------------CCceEeCCHHHH
Confidence            3799999999999999999999864   58999998876553211          0            011223344 34


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+||.|+|.  +...+++.++.  +.++.+++|..++++++.+...++...+.+..||+.|......+..+..   
T Consensus        59 ~~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---  131 (258)
T PRK06476         59 VDRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---  131 (258)
T ss_pred             HHhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---
Confidence            6789999999983  34466776662  4677888888899999999998866567888888877664444444422   


Q ss_pred             CHHHHHHHHHHHHHcCCceEEecC--cccc-----hhhchHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT  362 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~d--~~G~-----i~nril~~~~~ea~~l-~~~g~~~~~ID~a~~  362 (496)
                      +   .+.+.++++.+|..+.+..+  .+-+     ..-.++ .++.++..+ ...|+++++..+++.
T Consensus       132 ~---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~~  194 (258)
T PRK06476        132 P---DPFVAALFDALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYLA  194 (258)
T ss_pred             C---HHHHHHHHHhcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1   25789999999988774422  1111     111111 234455444 467899888777765

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.29  E-value=7.8e-11  Score=123.91  Aligned_cols=186  Identities=16%  Similarity=0.168  Sum_probs=125.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc----cc
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF  224 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~  224 (496)
                      +|+|||+|.||.+||..|+++|++|++||++++..+...+.        ...|.           .+....+.+    .+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence            48999999999999999999999999999999987764321        00010           011222322    34


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH--HHHhhhcCCCeeeecccc-CcCCC-------CCe
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPL  294 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~--~la~~~~~~~r~ig~hf~-~P~~~-------~~l  294 (496)
                      +.+|+||.+||....+ .+++.++.+++.++.||+..+++.+.+  +..+.+..    -|.||+ .|+..       ++ 
T Consensus        62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~-  135 (467)
T TIGR00873        62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP-  135 (467)
T ss_pred             CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-
Confidence            5799999999986554 567788888888888887665544332  33444421    245554 24332       23 


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCce------EEecC-cccc---hhhc-hHHHH---HHHHHHHHH--cCCCHHHHH
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF---AVNR-MFFPY---TQAAFLLVE--RGTDLYLID  358 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d-~~G~---i~nr-il~~~---~~ea~~l~~--~g~~~~~ID  358 (496)
                       .++.+  .++++++.++++++.++...      .++++ +.|.   ++|+ +...+   +.|++.++.  .|++++++-
T Consensus       136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~  212 (467)
T TIGR00873       136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA  212 (467)
T ss_pred             -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence             34444  48899999999999999763      66765 3343   3444 44433   689999873  788999988


Q ss_pred             HHHH
Q 010966          359 RAIT  362 (496)
Q Consensus       359 ~a~~  362 (496)
                      .++.
T Consensus       213 ~v~~  216 (467)
T TIGR00873       213 EVFT  216 (467)
T ss_pred             HHHH
Confidence            8884

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.29  E-value=3.8e-11  Score=122.12  Aligned_cols=137  Identities=14%  Similarity=0.110  Sum_probs=102.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cccc
Q 010966          148 KKVAILGG-GLMGSGIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF  224 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~  224 (496)
                      ++|+|||. |.||+++|..|.. .|++|+.+|++.+.                                   ..+ .+.+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence            58999999 9999999999986 48999999985210                                   112 2347


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhh---CCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCCC-----CCe
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPL  294 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~~-----~~l  294 (496)
                      ++||+||.|+|..  ...++++++.++   ++++++|+..+|+..  ++.+   .....+|+|.||+..++.     ...
T Consensus        50 ~~aDlVilavPv~--~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~  124 (370)
T PRK08818         50 QRADVLIFSAPIR--HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV  124 (370)
T ss_pred             cCCCEEEEeCCHH--HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence            8999999999955  456788888876   689999998888763  2333   223346999999986653     233


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +-+++.  ..++.++.+.++++.+|..++.+.
T Consensus       125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~  154 (370)
T PRK08818        125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT  154 (370)
T ss_pred             EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence            345554  445567889999999999998885

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=6.3e-12  Score=125.28  Aligned_cols=96  Identities=14%  Similarity=0.048  Sum_probs=84.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++|++++.++|++++..+ |.                                  
T Consensus       173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  217 (298)
T PRK12478        173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIP-LS----------------------------------  217 (298)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5899999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~l~~s~~a~--------~~i~aF~~kr~~~  132 (496)
                       +...+|++++.... .+++++++.|...+..++.|++++        +++.+|++||+++
T Consensus       218 -a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~  277 (298)
T PRK12478        218 -QLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGP  277 (298)
T ss_pred             -HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCc
Confidence             33478888888766 469999999999999999999997        5999999999864

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.29  E-value=4.4e-11  Score=119.55  Aligned_cols=204  Identities=16%  Similarity=0.100  Sum_probs=137.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|+|||+|.||.++|..|..+|++|+++++. ++..+.+.           +.|             +..++..+.+++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence            58999999999999999999999998876654 33333321           112             112233345789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCC-------CCeE-EEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV  298 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~-------~~lv-eiv  298 (496)
                      ||+||.++|.+.. ...+.+++.+.++++. ++|...++++..+...++...+++.+.|+.|.+.       +..+ -++
T Consensus        60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~  137 (314)
T TIGR00465        60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI  137 (314)
T ss_pred             CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence            9999999996533 4466677888888776 6678889999998877765568999999999973       5444 343


Q ss_pred             -eCCCCCHHHHHHHHHHHHHcCCc-------eE--Eec-Ccccc--hhhchHHHHHHHHH-HHHHcCCCHHHHHHHHH-h
Q 010966          299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYTQAAF-LLVERGTDLYLIDRAIT-K  363 (496)
Q Consensus       299 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~~G~--i~nril~~~~~ea~-~l~~~g~~~~~ID~a~~-~  363 (496)
                       .+...+.+..+.+..++..+|..       ..  .+. |--+.  .+.-..-+++...+ .+++.|.+++.--.... .
T Consensus       138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~  217 (314)
T TIGR00465       138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE  217 (314)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence             67778899999999999999988       21  221 11111  11112223332222 23788998877655543 2


Q ss_pred             cCCCcchhHhhhccCch
Q 010966          364 FGMPMGPFRLADLVGFG  380 (496)
Q Consensus       364 ~g~p~GPf~l~D~~Gld  380 (496)
                      +   .|--.++-.-|+.
T Consensus       218 ~---~g~~~l~~e~g~~  231 (314)
T TIGR00465       218 L---KLIVDLIYEGGIT  231 (314)
T ss_pred             H---HHHHHHHHHhcHH
Confidence            2   4666666666764

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=1.1e-11  Score=120.99  Aligned_cols=97  Identities=19%  Similarity=0.242  Sum_probs=86.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.++|++++..+ |.                                  
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  200 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-PL----------------------------------  200 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus       201 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~  252 (255)
T PRK08150        201 -TNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV  252 (255)
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence             2346888888887788999999999999999999999999999999987654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.28  E-value=2.7e-10  Score=110.58  Aligned_cols=189  Identities=14%  Similarity=0.169  Sum_probs=128.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      .+||+|||+|.||.+++..++++|+   + |+++++ +++.++...+.          .+             +..+++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~   60 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW   60 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence            3689999999999999999998873   3 777887 46655443211          01             1223444


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEe
Q 010966          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR  299 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~  299 (496)
                       +.++++|+||.|+|..  .-.++++++.++++ +.+|+|.+.+++++.|...++...+++..||+.|......+. ++.
T Consensus        61 ~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         61 KQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             HHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence             3468999999999865  34678888877665 568889999999999999886656788899987765543333 345


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecCcccchh---hch---HHHHHHHHH-H-HHHcCCCHHHHHHHHH
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV---NRM---FFPYTQAAF-L-LVERGTDLYLIDRAIT  362 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~---nri---l~~~~~ea~-~-l~~~g~~~~~ID~a~~  362 (496)
                      ....+++..+.+.+++..+|..+.+ .+..-..+   .-.   +..++.+++ . .+..|++.++-.+++.
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~  207 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI  207 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            6667899999999999999998864 43111111   111   111233333 2 3457888888666665

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=99.28  E-value=9.1e-12  Score=121.78  Aligned_cols=96  Identities=24%  Similarity=0.259  Sum_probs=86.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.+++++++..+ |.                                  
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  202 (257)
T PRK05862        158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS-LP----------------------------------  202 (257)
T ss_pred             HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999998752 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+++..|.+.+..++.|+++++++++|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~  253 (257)
T PRK05862        203 -AVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV  253 (257)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence             345789999988888999999999999999999999999999999988754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.27  E-value=1.4e-11  Score=123.97  Aligned_cols=126  Identities=21%  Similarity=0.401  Sum_probs=96.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .+||+|||+|.||.++|..++..|+ +|+++|++++.+..-.      ++.....      .......++..++++++++
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~   73 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA   73 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence            3699999999999999999999996 9999999998753211      1111110      0111223677778899999


Q ss_pred             CCCEEEEec-------------------cCChHHHHHHHHHHHhhCCCC-eeEeccCCcccHHHHHhhhcCC-Ceeeecc
Q 010966          226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH  284 (496)
Q Consensus       226 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~il~sntS~~~~~~la~~~~~~-~r~ig~h  284 (496)
                      +||+||+++                   .++..++++++.++.+++++. .|++||++.+....+....+.| .|++|++
T Consensus        74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            999999955                   567888999999999999774 5678999988888887777665 8899986

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=1.1e-11  Score=121.47  Aligned_cols=96  Identities=27%  Similarity=0.413  Sum_probs=85.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  208 (260)
T PRK05980        164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-PV----------------------------------  208 (260)
T ss_pred             HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++++..|...+..++.++++++++.+|++||+++
T Consensus       209 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        209 -AVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence             334788899888888899999999999999999999999999999998754

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=99.27  E-value=1.2e-11  Score=120.91  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  201 (256)
T TIGR02280       157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-TR----------------------------------  201 (256)
T ss_pred             HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.++++.|.+.+..++.|+++++++++|++||+++
T Consensus       202 -~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  252 (256)
T TIGR02280       202 -GLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ  252 (256)
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence             234788999888888899999999999999999999999999999988765

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=9.4e-12  Score=121.01  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=84.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.                                  
T Consensus       155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  199 (249)
T PRK07938        155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD-TR----------------------------------  199 (249)
T ss_pred             HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~  131 (496)
                       +...+|++++.....++++.++.|...+..++.++++++++++|++||++
T Consensus       200 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        200 -VIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence             23478888888777788999999999999999999999999999999864

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=1.4e-11  Score=120.65  Aligned_cols=96  Identities=32%  Similarity=0.331  Sum_probs=85.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  206 (261)
T PRK08138        162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMP-PL----------------------------------  206 (261)
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999998752 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       ++..+|++++.....++.+++..|.+.+..++.++++++++++|++||+++
T Consensus       207 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~  257 (261)
T PRK08138        207 -ALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA  257 (261)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence             344788999888888899999999999999999999999999999998755

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=1.6e-11  Score=120.02  Aligned_cols=96  Identities=31%  Similarity=0.469  Sum_probs=85.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  202 (257)
T PRK07658        158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-PA----------------------------------  202 (257)
T ss_pred             HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999998862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       ++..+|++++.....+++++++.|...+..++.++++++++++|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~  253 (257)
T PRK07658        203 -TTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS  253 (257)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             344788899888778899999999999999999999999999999988755

>PRK08139 enoyl-CoA hydratase; Validated

Probab=99.27  E-value=1.5e-11  Score=120.78  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.                                  
T Consensus       167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  211 (266)
T PRK08139        167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS-PA----------------------------------  211 (266)
T ss_pred             HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++.+..|.+.+..++.++++++++++|++||+++
T Consensus       212 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  262 (266)
T PRK08139        212 -AVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE  262 (266)
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence             234788999888888899999999999999999999999999999988655

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.26  E-value=9.9e-12  Score=117.56  Aligned_cols=97  Identities=24%  Similarity=0.271  Sum_probs=87.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||.++++.+|.+|+++++..+ |.                                  
T Consensus       191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~~----------------------------------  235 (290)
T KOG1680|consen  191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-PL----------------------------------  235 (290)
T ss_pred             HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5899999999999999999999999999999999999999973 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       +..+.|+.++.+...++.+++..|...|...+.+++.+|++.+|.+||+++.
T Consensus       236 -~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~  287 (290)
T KOG1680|consen  236 -VVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF  287 (290)
T ss_pred             -HHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence             2337889999999999999999999999999999999999999988887654

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=1.8e-11  Score=121.06  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=86.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++.+.++|++++..+ |.                                  
T Consensus       178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  222 (277)
T PRK08258        178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-TF----------------------------------  222 (277)
T ss_pred             HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       +...+|++++.....++++.++.|...+..++.|+++++++++|++||+++.
T Consensus       223 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        223 -AHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence             3347889998888888999999999999999999999999999999987653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.25  E-value=2.7e-10  Score=118.81  Aligned_cols=199  Identities=15%  Similarity=0.091  Sum_probs=124.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHh--hhcceecccCccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEK--TISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~--~~~~i~~~~~~~~  223 (496)
                      +||+|||+|.||..+|..|+. ||+|++||+++++++...            .|..  .+...+.  ...++.++++.+.
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~~g~l~~t~~~~~   73 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELREARYLKFTSEIEK   73 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHhhCCeeEEeCHHH
Confidence            689999999999999999877 699999999999887743            2221  1111111  1235667777778


Q ss_pred             ccCCCEEEEeccCCh------H--HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHH-hhhcCC-Ceeeeccc---cC
Q 010966          224 FKDVDMVIEAIIENV------S--LKQQIFADLEKYCPPHCILASNTSTIDL---NLIG-ERTYSK-DRIVGAHF---FS  287 (496)
Q Consensus       224 ~~~aDlVIeav~e~~------~--~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la-~~~~~~-~r~ig~hf---~~  287 (496)
                      +++||+||.|||...      +  ......+.|.++++++.+++. .||+++   .++. ..+... ..-.+-.|   |+
T Consensus        74 ~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~  152 (425)
T PRK15182         74 IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVGYS  152 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeC
Confidence            899999999999652      2  222233568888888887753 344443   2232 222110 00001111   23


Q ss_pred             cCCCC---------CeEEEEeCCCCCHHHHHHHHHHHHHcC-CceEEecC-cccc---hhhchHH----HHHHHHHHHHH
Q 010966          288 PAHVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE  349 (496)
Q Consensus       288 P~~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~~G~---i~nril~----~~~~ea~~l~~  349 (496)
                      |....         .+--++.|  .+++..+.+..+++.+. ..++++.+ ..+.   ++|+++.    +++||++.+.+
T Consensus       153 PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae  230 (425)
T PRK15182        153 PERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFN  230 (425)
T ss_pred             CCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43221         11225555  35778889999999875 34566654 2232   5666665    45799988875


Q ss_pred             -cCCCHHHHHHHHH
Q 010966          350 -RGTDLYLIDRAIT  362 (496)
Q Consensus       350 -~g~~~~~ID~a~~  362 (496)
                       .|+|+.++-+++.
T Consensus       231 ~~GiD~~~v~~a~~  244 (425)
T PRK15182        231 RLNIDTEAVLRAAG  244 (425)
T ss_pred             HhCcCHHHHHHHhc
Confidence             6999999888875

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.25  E-value=2.3e-10  Score=109.22  Aligned_cols=163  Identities=18%  Similarity=0.176  Sum_probs=108.7

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      |||+||| +|.||++++..|+++|++|++++++++.++.........+   ...| +.        ..+..+++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~---~~~g-~~--------~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEEL---GHGG-SD--------IKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhc---cccC-CC--------ceEEEeChHHHHhc
Confidence            4899997 8999999999999999999999999988765432211100   0001 00        01222344466889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-----------------HHHHhhhcCCCeeeeccccCcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA  289 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-----------------~~la~~~~~~~r~ig~hf~~P~  289 (496)
                      +|+||.|+|..  .-.+++.++.+.+.. ++|+|.+.+++.                 +.+++.++...+++....+.|.
T Consensus        69 aDvVilavp~~--~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVPWD--HVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECCHH--HHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            99999999854  345666777666654 777777666665                 4455655433678887554432


Q ss_pred             CC-------CCeEEEEeCCCCCHHHHHHHHHHHHHc-CCceEEecC
Q 010966          290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN  327 (496)
Q Consensus       290 ~~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d  327 (496)
                      ..       .+...++.++  +++..+.+..+.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence            21       1222345553  677889999999999 999998864

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=2.1e-11  Score=119.10  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |.                                  
T Consensus       163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  207 (256)
T PRK06143        163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG-PQ----------------------------------  207 (256)
T ss_pred             HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|+.++.....++++++..|...+..++.++++++++++|++||+
T Consensus       208 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        208 -ALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             -HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence             3347888888887888999999999999999999999999999999875

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=2.4e-11  Score=119.21  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=85.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~~----------------------------------  207 (262)
T PRK08140        163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-TR----------------------------------  207 (262)
T ss_pred             HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.++++.|...+..++.++++++++++|++||++.
T Consensus       208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  258 (262)
T PRK08140        208 -GLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR  258 (262)
T ss_pred             -HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence             234788999888888899999999999999999999999999999998654

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.6e-11  Score=119.02  Aligned_cols=96  Identities=19%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~~----------------------------------  208 (263)
T PRK07799        164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-PL----------------------------------  208 (263)
T ss_pred             HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-hH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.++++.|.+.+..++.++++++++++|++||+++
T Consensus       209 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~  259 (263)
T PRK07799        209 -AVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN  259 (263)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence             334788999888888899999999999999999999999999999988654

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.4e-11  Score=118.81  Aligned_cols=96  Identities=25%  Similarity=0.343  Sum_probs=85.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  203 (258)
T PRK09076        159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-PS----------------------------------  203 (258)
T ss_pred             HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+.+..|...+..++.++++++++++|++||+++
T Consensus       204 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~  254 (258)
T PRK09076        204 -AVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ  254 (258)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence             334788888887778899999999999999999999999999999988755

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.2e-11  Score=118.99  Aligned_cols=96  Identities=25%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~-~~----------------------------------  202 (257)
T PRK06495        158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS-PL----------------------------------  202 (257)
T ss_pred             HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.++++.|...+..++.|+++++++++|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~  253 (257)
T PRK06495        203 -ATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV  253 (257)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence             234788888888788899999999999999999999999999999998765

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=2.6e-11  Score=118.34  Aligned_cols=96  Identities=22%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  199 (254)
T PRK08252        155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG-PL----------------------------------  199 (254)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+.++.|...+..++.++++++++.+|++||+++
T Consensus       200 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~  250 (254)
T PRK08252        200 -AVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV  250 (254)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence             234688888888777899999999999999999999999999999987654

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=99.23  E-value=3.6e-11  Score=117.45  Aligned_cols=96  Identities=25%  Similarity=0.342  Sum_probs=85.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~~----------------------------------  200 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-PL----------------------------------  200 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|+.++.....++++.++.|.+.+..++.++++++++++|++||+++
T Consensus       201 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~  251 (255)
T PRK09674        201 -ALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD  251 (255)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence             334788888888888899999999999999999999999999999987654

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=3.4e-11  Score=118.53  Aligned_cols=96  Identities=18%  Similarity=0.230  Sum_probs=85.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  214 (269)
T PRK06127        170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-PL----------------------------------  214 (269)
T ss_pred             HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++.++.|...+..++.++++++++.+|++||+++
T Consensus       215 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~  265 (269)
T PRK06127        215 -TLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV  265 (269)
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence             234788888888788899999999999999999999999999999998754

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=99.23  E-value=2.7e-11  Score=118.70  Aligned_cols=96  Identities=27%  Similarity=0.436  Sum_probs=86.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++.+.+++++++..+ |.                                  
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  205 (260)
T PRK05809        161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-PI----------------------------------  205 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++
T Consensus       206 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~  256 (260)
T PRK05809        206 -AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN  256 (260)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence             334788999888888899999999999999999999999999999988754

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=3.3e-11  Score=118.17  Aligned_cols=96  Identities=20%  Similarity=0.242  Sum_probs=83.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++.+++.+++++++..+ |.                                  
T Consensus       163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~~----------------------------------  207 (262)
T PRK07468        163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-PG----------------------------------  207 (262)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence            5899999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++......++..++.|...+..++.|+++++++++|++||+++
T Consensus       208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~  258 (262)
T PRK07468        208 -AVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA  258 (262)
T ss_pred             -HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             234688888876555678889999999999999999999999999998765

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=99.23  E-value=2.6e-11  Score=119.72  Aligned_cols=99  Identities=19%  Similarity=0.175  Sum_probs=87.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.                                  
T Consensus       172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  216 (278)
T PLN03214        172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-SA----------------------------------  216 (278)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5899999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~  135 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++|++|.+.||..
T Consensus       217 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~  270 (278)
T PLN03214        217 -ARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK  270 (278)
T ss_pred             -HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence             234788889888778899999999999999999999999999999998877743

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=99.22  E-value=2.9e-11  Score=118.14  Aligned_cols=96  Identities=27%  Similarity=0.356  Sum_probs=85.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  200 (255)
T PRK06563        156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA-PL----------------------------------  200 (255)
T ss_pred             HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence            5799999999999999999999999999999999999998762 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.++++.|...+..++.++++++++.+|++||+++
T Consensus       201 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  251 (255)
T PRK06563        201 -GVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR  251 (255)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence             234688888887778899999999999999999999999999999998754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.22  E-value=2.8e-11  Score=121.06  Aligned_cols=122  Identities=20%  Similarity=0.355  Sum_probs=91.0

Q ss_pred             EEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966          150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (496)
                      |+|||+|.||.++|..++..|+ +|+++|++++.++.....+...       .     .......+++.+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~-------~-----~~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA-------A-----PILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh-------h-----hhcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 9999999987543211111110       0     0111224677777888999999


Q ss_pred             EEEEec--------------cCChHHHHHHHHHHHhhCCCCe-eEeccCCcccHHHHHhhhcC-CCeeeec
Q 010966          229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       229 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      +||+++              +++.++++++++++.++++++. |++||.+.+....+....+. |.|++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999866              6788999999999999998777 46788887777777666654 4678776

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=99.22  E-value=3.3e-11  Score=118.48  Aligned_cols=96  Identities=20%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.                                  
T Consensus       167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~~----------------------------------  211 (266)
T PRK05981        167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP-TV----------------------------------  211 (266)
T ss_pred             HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999998762 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+.++.|...+..++.|+++++++.+|++||+++
T Consensus       212 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~  262 (266)
T PRK05981        212 -ALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ  262 (266)
T ss_pred             -HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence             234788888887778899999999999999999999999999999988765

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.21  E-value=3e-10  Score=127.48  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=117.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      ++||+|||+|.||.+++..+..+|  ++|++||++++.++.+.           +.|...           ...++. +.
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~   60 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA   60 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence            578999999999999999999999  48999999998766532           223211           012233 34


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhc-CCCeeeeccccCcCC----------
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH----------  290 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~-~~~r~ig~hf~~P~~----------  290 (496)
                      ++++|+||+|+|.+  ...++++++.++++++++|++.+|+.  .++.+.+.+. .+.||++.||+....          
T Consensus        61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~  138 (735)
T PRK14806         61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD  138 (735)
T ss_pred             hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence            78999999999864  56788899998888888776555433  3566666553 357899999985221          


Q ss_pred             --CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                        ....+.++++..++++..+.+.++++.+|..++++.
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~  176 (735)
T PRK14806        139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD  176 (735)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence              234567888888999999999999999999888885

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=99.21  E-value=4.1e-11  Score=118.31  Aligned_cols=96  Identities=24%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+|||++++|+||+++||||+|||+ +++.+++.++|++++..+ |.                                 
T Consensus       175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p~---------------------------------  220 (275)
T PLN02664        175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-PL---------------------------------  220 (275)
T ss_pred             HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-HH---------------------------------
Confidence            5799999999999999999999985 889999999999999862 32                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                        +...+|++++.....++.++++.|...+..++.++++++++++|++||++.
T Consensus       221 --a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~  271 (275)
T PLN02664        221 --AVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV  271 (275)
T ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence              234788888887778899999999999999999999999999999998755

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=99.21  E-value=4.4e-11  Score=117.20  Aligned_cols=96  Identities=21%  Similarity=0.306  Sum_probs=85.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.                                  
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  205 (260)
T PRK07657        161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-PI----------------------------------  205 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999998862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++++..|...+..++.|+++++++++|+++|+++
T Consensus       206 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~  256 (260)
T PRK07657        206 -AVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM  256 (260)
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence             334788999888788899999999999999999999999999999988654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.21  E-value=2e-11  Score=135.26  Aligned_cols=85  Identities=20%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (496)
Q Consensus       329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (496)
                      +..++||++.++++||++++++|+  +|+|||.+|+ |+|||+   |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus       624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~  702 (715)
T PRK11730        624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG  702 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence            456999999999999999999994  9999999999 999986   9999999999999999998764 57777888999


Q ss_pred             HHHHHhcCCCccccCceee
Q 010966          403 IPIMQEDKRAGETTRKGFY  421 (496)
Q Consensus       403 l~~~~~~G~lG~k~g~GFY  421 (496)
                      +++|+++|       ++||
T Consensus       703 L~~~v~~~-------~~f~  714 (715)
T PRK11730        703 LREMAANG-------ESYY  714 (715)
T ss_pred             HHHHHHcC-------CCCC
Confidence            99999886       6787

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.21  E-value=2e-10  Score=112.48  Aligned_cols=145  Identities=19%  Similarity=0.171  Sum_probs=110.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +||+|||+|+||++|+..+.++|.    +|+++|++++..                 +.            ....++.+.
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~   54 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL   54 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence            489999999999999999998873    499999887531                 00            011222334


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeE-EEEeCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVRTNQ  302 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lv-eiv~~~~  302 (496)
                      +++||+||.|++  +..-.+++.++.++++++ +++|..++++++.+...++...+++.+.|+.|......+ -+++...
T Consensus        55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~  131 (260)
T PTZ00431         55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN  131 (260)
T ss_pred             HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence            678999999997  445678889988877654 567888999999998887655567788888887665444 4557778


Q ss_pred             CCHHHHHHHHHHHHHcCCceEE
Q 010966          303 TSPQVIVDLLDIGKKIKKTPIV  324 (496)
Q Consensus       303 t~~e~~~~~~~l~~~lGk~~v~  324 (496)
                      ++++..+.+.++++.+|....+
T Consensus       132 ~~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        132 VDSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             CCHHHHHHHHHHHHhCCcEEEE
Confidence            8899999999999999987655

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=3.6e-11  Score=118.57  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=85.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++...+|.                                  
T Consensus       172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~----------------------------------  217 (272)
T PRK06210        172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPA----------------------------------  217 (272)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHH----------------------------------
Confidence            5799999999999999999999999999999999999998741232                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.++++.|...+..++.++++++++.+|++||++.
T Consensus       218 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~  268 (272)
T PRK06210        218 -SMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR  268 (272)
T ss_pred             -HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence             334788899888788899999999999999999999999999999998754

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=4.5e-11  Score=117.50  Aligned_cols=96  Identities=22%  Similarity=0.248  Sum_probs=85.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  211 (266)
T PRK09245        167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-PH----------------------------------  211 (266)
T ss_pred             HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++.+..|.+.+..++.++++++++++|++||++.
T Consensus       212 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  262 (266)
T PRK09245        212 -ALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV  262 (266)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence             334788999888778899999999999999999999999999999988754

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=4e-11  Score=117.39  Aligned_cols=96  Identities=24%  Similarity=0.324  Sum_probs=83.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.++|++++..+ |.                                  
T Consensus       158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  202 (259)
T PRK06494        158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-PL----------------------------------  202 (259)
T ss_pred             HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E--~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|  ...+..++.++++++++.+|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~  255 (259)
T PRK06494        203 -SIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR  255 (259)
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence             334788899887778899999998  457888999999999999999987654

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=4e-11  Score=118.22  Aligned_cols=96  Identities=21%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+++|++++|+||+++||||+|||+ +++++++.+++++++..+ |.                                 
T Consensus       173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~-~~---------------------------------  218 (272)
T PRK06142        173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS-PL---------------------------------  218 (272)
T ss_pred             HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC-HH---------------------------------
Confidence            5789999999999999999999986 889999999999999862 22                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                        +...+|++++.....++.+.++.|...+..++.|+++++++++|++||+++
T Consensus       219 --a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~  269 (272)
T PRK06142        219 --AVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE  269 (272)
T ss_pred             --HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence              234788888887778899999999999999999999999999999988654

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=4.7e-11  Score=116.97  Aligned_cols=96  Identities=21%  Similarity=0.316  Sum_probs=85.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~~----------------------------------  206 (260)
T PRK07511        162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-PN----------------------------------  206 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999998762 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|+.++.....++.++++.|.+.+..++.++++++++++|+++|+++
T Consensus       207 -~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~  257 (260)
T PRK07511        207 -ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD  257 (260)
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence             334788899888888899999999999999999999999999999988654

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=5.7e-11  Score=116.53  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++.+++.++|++++..+ |.                                  
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  206 (262)
T PRK05995        162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS-PQ----------------------------------  206 (262)
T ss_pred             HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~-l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+. ++.|...+..++.|+++++++.+|++||+++
T Consensus       207 -a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~  258 (262)
T PRK05995        207 -AVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA  258 (262)
T ss_pred             -HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence             33478888888777888888 8889999999999999999999999998765

>PTZ00117 malate dehydrogenase; Provisional

Probab=99.19  E-value=7.4e-11  Score=118.76  Aligned_cols=125  Identities=22%  Similarity=0.358  Sum_probs=94.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||.++|..++..| .+|+++|++++.++...-.+      ....      .......+++.+++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl------~~~~------~~~~~~~~i~~~~d~~~l~~   73 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDL------KHFS------TLVGSNINILGTNNYEDIKD   73 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHH------hhhc------cccCCCeEEEeCCCHHHhCC
Confidence            49999999999999999999999 69999999987654211111      0000      00111235666678899999


Q ss_pred             CCEEEEec--cCCh------------HHHHHHHHHHHhhCCCC-eeEeccCCcccHHHHHhhhcCC-Ceeeecc
Q 010966          227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH  284 (496)
Q Consensus       227 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~il~sntS~~~~~~la~~~~~~-~r~ig~h  284 (496)
                      ||+||+++  ++++            .+++++..++.+++++. .|++||.+.+....+......| .|++|++
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            99999998  7766            88999999999998777 5667998877777776666665 7888876

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.18  E-value=9.1e-11  Score=117.84  Aligned_cols=125  Identities=23%  Similarity=0.334  Sum_probs=85.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+....            .......+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~------------~~~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA------------PVEGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh------------hhcCCCcEEEeCCCHHHHC
Confidence            5799999999999999999999876 99999999887543221111110            0011124677677888899


Q ss_pred             CCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCe-eEeccCCcccHHHHHhhhcC-CCeeeec
Q 010966          226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      +||+||+++              .++..+++++++++.+.+++.. |++||.+.+-..-+....+. |.|++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999986              3566889999999999986653 44566554433333333332 3566664

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.18  E-value=1.2e-09  Score=109.30  Aligned_cols=202  Identities=18%  Similarity=0.256  Sum_probs=128.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcceecccCcc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (496)
                      |||+|||+|..|...+.+|+..||+|+.+|+++++++...+...    ..++.+++++..        -+|+++|+|++ 
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~--------~gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA--------SGRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc--------cCcEEEEcCHHH
Confidence            68999999999999999999999999999999999887654332    223333333221        24689999986 


Q ss_pred             cccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhc--CCCeeeeccccCcC
Q 010966          223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTY--SKDRIVGAHFFSPA  289 (496)
Q Consensus       223 ~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~--~~~r~ig~hf~~P~  289 (496)
                      +++++|++|.||+.        |+.....+.+++.++++..++++ +-||+|+   +++.+.+.  .+.+-+++- +||-
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE  150 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE  150 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence            58999999999975        34455677788888888866555 4566665   34443321  111111111 2332


Q ss_pred             CC----------CCeEEEEeCCCCCHHHHHHHHHHHHHc--CCceEEecCcc-c----chhhchHH---HHHHHHHHHHH
Q 010966          290 HV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-G----FAVNRMFF---PYTQAAFLLVE  349 (496)
Q Consensus       290 ~~----------~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~~-G----~i~nril~---~~~~ea~~l~~  349 (496)
                      -.          .|-- ++-|.. ++.+.+.+.+++...  ...|+++.+.. .    +..|-.|+   .++||-..+.+
T Consensus       151 FLREG~Av~D~~~PdR-IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice  228 (414)
T COG1004         151 FLREGSAVYDFLYPDR-IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE  228 (414)
T ss_pred             HhcCcchhhhccCCCe-EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10          1111 333322 233555566666544  55666665422 2    24566664   46899888775


Q ss_pred             -cCCCHHHHHHHH
Q 010966          350 -RGTDLYLIDRAI  361 (496)
Q Consensus       350 -~g~~~~~ID~a~  361 (496)
                       -|++.++|-+++
T Consensus       229 ~~g~D~~~V~~gI  241 (414)
T COG1004         229 KVGADVKQVAEGI  241 (414)
T ss_pred             HhCCCHHHHHHHc
Confidence             688999988776

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.18  E-value=3.4e-11  Score=133.21  Aligned_cols=85  Identities=21%  Similarity=0.349  Sum_probs=77.3

Q ss_pred             ccchhhchHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966          329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (496)
Q Consensus       329 ~G~i~nril~~~~~ea~~l~~~g-~-~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (496)
                      +..|+||++.++++|+++++++| + +++|||.+|. |+|||+   |||+++|.+|+|.+.++++.+. .+++++.|+++
T Consensus       624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~  702 (714)
T TIGR02437       624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAK  702 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHH
Confidence            45699999999999999999999 5 9999999999 999996   9999999999999999999654 78888889999


Q ss_pred             HHHHHhcCCCccccCceee
Q 010966          403 IPIMQEDKRAGETTRKGFY  421 (496)
Q Consensus       403 l~~~~~~G~lG~k~g~GFY  421 (496)
                      +.+|+++|       +.||
T Consensus       703 l~~~~~~g-------~~f~  714 (714)
T TIGR02437       703 LREMAKNG-------QSFY  714 (714)
T ss_pred             HHHHHHcC-------CCCC
Confidence            99999986       6686

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=99.18  E-value=7.2e-11  Score=115.65  Aligned_cols=96  Identities=25%  Similarity=0.346  Sum_probs=85.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|+|++++++.|.++|++++..+ |.                                  
T Consensus       160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~~----------------------------------  204 (259)
T PRK06688        160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-AS----------------------------------  204 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999998862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++++..|.+.+..++.++++++++++|++||+++
T Consensus       205 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~  255 (259)
T PRK06688        205 -ALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD  255 (259)
T ss_pred             -HHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             223678888888888899999999999999999999999999999987654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.17  E-value=3.3e-09  Score=105.74  Aligned_cols=201  Identities=18%  Similarity=0.247  Sum_probs=132.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      .+|+|||+|.+|..+|..++++|++|+.+|+|+.+.+.....-        ...+...++            .++++.|+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence            7999999999999999999999999999999999887643210        011111222            25678899


Q ss_pred             CcccccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcC--CCeeeecccc-
Q 010966          220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS--KDRIVGAHFF-  286 (496)
Q Consensus       220 ~~~~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~--~~r~ig~hf~-  286 (496)
                      +.+.++.||++|.|||.        |+....+..+.|.+.++++.+++.-|++.  ..+++...+-.  +.=.++.-|+ 
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence            99999999999999985        34445566678999999999877544433  24455443311  1111222222 


Q ss_pred             --CcCCCCC---eEE------EEeCCCCCHHHHHHHHHHHHHcCCceEEecCcc-c---chhhchH----HHHHHHHHHH
Q 010966          287 --SPAHVMP---LLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT-G---FAVNRMF----FPYTQAAFLL  347 (496)
Q Consensus       287 --~P~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-G---~i~nril----~~~~~ea~~l  347 (496)
                        +|-+.+|   +.|      ++.|  .+++..+.+..+.+.+=+..+.+.+.. .   -+..+++    .++.||-..+
T Consensus       158 aysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali  235 (436)
T COG0677         158 AYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI  235 (436)
T ss_pred             eeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence              4544332   223      4544  578899999999998766666655421 2   2334444    3567887766


Q ss_pred             H-HcCCCHHHHHHHHH
Q 010966          348 V-ERGTDLYLIDRAIT  362 (496)
Q Consensus       348 ~-~~g~~~~~ID~a~~  362 (496)
                      . +.|++..++=++..
T Consensus       236 ~~~~GIdvwevIeaAn  251 (436)
T COG0677         236 CNAMGIDVWEVIEAAN  251 (436)
T ss_pred             HHHhCCcHHHHHHHhc
Confidence            5 57998877666654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.17  E-value=3.7e-10  Score=115.10  Aligned_cols=166  Identities=12%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~  222 (496)
                      ++||+|||+|.||+.+|..|+++|++|+++|+++. .+...           +.|. +.   ..+......++..+++.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   69 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA   69 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence            57899999999999999999999999999999653 22211           1121 00   000001112344556667


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeeeeccccC-----cCCC--CCe
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL  294 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~ig~hf~~-----P~~~--~~l  294 (496)
                      .+.++|+||.|++...  ..+++.++.+.++++++|++.++++.. +.+.+.++....+.|.+++.     |...  ...
T Consensus        70 ~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~  147 (341)
T PRK08229         70 ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS  147 (341)
T ss_pred             hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence            7889999999998653  467888999999999988887777764 45666664433344545432     2110  000


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcc
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT  329 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  329 (496)
                      -.+.-+.   .+.++.+.++++..|....+++|..
T Consensus       148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~  179 (341)
T PRK08229        148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMR  179 (341)
T ss_pred             CceEecC---CchHHHHHHHHHhcCCCceecchhH
Confidence            0122221   2446788999999998888887743

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.17  E-value=3.4e-11  Score=128.52  Aligned_cols=95  Identities=9%  Similarity=0.014  Sum_probs=87.0

Q ss_pred             cccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 010966            2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT   81 (496)
Q Consensus         2 iltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   81 (496)
                      ++||++++|+||+++||||+|||++++++++.++|++++..+ |.                                   
T Consensus       446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p~-----------------------------------  489 (550)
T PRK08184        446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-PD-----------------------------------  489 (550)
T ss_pred             HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-HH-----------------------------------
Confidence            589999999999999999999999999999999999999873 32                                   


Q ss_pred             cHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhcCCC
Q 010966           82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTS  132 (496)
Q Consensus        82 A~~~~k~~i~~~~~~~~~~~-l~~E~~~~~~l~~s~~a~~---~i~aF~~kr~~~  132 (496)
                      |...+|++++.+...+++++ +..|.+.|..+++|+++++   ++++|++||+++
T Consensus       490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~  544 (550)
T PRK08184        490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQ  544 (550)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCC
Confidence            33478999999999999999 9999999999999999999   999999999875

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.17  E-value=3.6e-11  Score=127.96  Aligned_cols=96  Identities=10%  Similarity=-0.008  Sum_probs=87.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||++|||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  485 (546)
T TIGR03222       441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-PD----------------------------------  485 (546)
T ss_pred             HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence            4789999999999999999999999999999999999999873 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~-l~~E~~~~~~l~~s~~a~~---~i~aF~~kr~~~  132 (496)
                       |...+|++++.....+++++ +..|...|..++.|+++++   ++.+|++||+++
T Consensus       486 -a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~  540 (546)
T TIGR03222       486 -ALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQ  540 (546)
T ss_pred             -HHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCC
Confidence             33478899999989999999 9999999999999999999   999999999865

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=9.4e-11  Score=114.36  Aligned_cols=93  Identities=22%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.++|+++++.+ |.                                  
T Consensus       157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  201 (254)
T PRK08259        157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP-QT----------------------------------  201 (254)
T ss_pred             HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|++++.....++++++..|...+..++. +++++++.+|++|++
T Consensus       202 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        202 -CLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence             234788888887778899999999988888877 999999999998876

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=99.16  E-value=7.5e-11  Score=115.56  Aligned_cols=96  Identities=20%  Similarity=0.278  Sum_probs=83.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|+|++++.+++.+++++++..+ |.                                  
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  202 (261)
T PRK03580        158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-PL----------------------------------  202 (261)
T ss_pred             HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHH----HHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~----~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++++..|.    ..+..++.++++++++++|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~  257 (261)
T PRK03580        203 -AIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV  257 (261)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence             2346888888877788999988886    37888999999999999999998654

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=6.7e-11  Score=115.85  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|| ++++.+++.+++++++..+ |.                                  
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~-~~----------------------------------  205 (260)
T PRK07659        162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKP-LK----------------------------------  205 (260)
T ss_pred             HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            57999999999999999999999 7889999999999998862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus       206 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~  256 (260)
T PRK07659        206 -AMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV  256 (260)
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence             234788888887778899999999999999999999999999999998765

>PLN02712 arogenate dehydrogenase

Probab=99.16  E-value=5.7e-10  Score=122.34  Aligned_cols=154  Identities=13%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      ..++|+|||+|.||.++|..|...|++|++||++.+. +.+.           +.|             +...++.++ +
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence            3479999999999999999999999999999998642 2111           122             112334443 4


Q ss_pred             c-CCCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeeccccCcCCCCC-------
Q 010966          225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP-------  293 (496)
Q Consensus       225 ~-~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~~P~~~~~-------  293 (496)
                      . .+|+||.|+|..  ....++.++.. .++++++|++.+|+  .+++.+...++...+|++.||+.++....       
T Consensus       423 ~~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 589999999943  45567777764 57889999988777  45566666665555799999998765421       


Q ss_pred             -eEE--EEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          294 -LLE--IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       294 -lve--iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                       +++  ++.++....+.++.+.+++..+|..++.+.
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence             111  223444455667777899999999888885

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=1e-10  Score=114.20  Aligned_cols=94  Identities=19%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|+|++++++.+.+++++++..+ |.                                  
T Consensus       162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  206 (255)
T PRK07260        162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-SN----------------------------------  206 (255)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|+.++.....++++.+..|...+..++.|+++++++++|.+||+
T Consensus       207 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        207 -SYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             -HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence             3347889998887888999999999999999999999999999999874

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=99.15  E-value=9e-11  Score=115.23  Aligned_cols=96  Identities=17%  Similarity=0.258  Sum_probs=82.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++|.+++.+++++++..+ |.                                  
T Consensus       164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  208 (265)
T PRK05674        164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-PQ----------------------------------  208 (265)
T ss_pred             HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~-E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++.+++.. |...+..++.|+++++++++|++||+++
T Consensus       209 -a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~  260 (265)
T PRK05674        209 -ALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA  260 (265)
T ss_pred             -HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence             23478888888888888888765 4567888899999999999999998754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.15  E-value=8.9e-10  Score=110.69  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=93.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||+|||+|.||.+||..|+.+|++|++||++++                                     +++ +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHhc
Confidence            5899999999999999999999999999999853                                     011 23568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEeccCCcccH------HHHHh-hhcCCCeeeeccccCcCC------CC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL------NLIGE-RTYSKDRIVGAHFFSPAH------VM  292 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~~~~------~~la~-~~~~~~r~ig~hf~~P~~------~~  292 (496)
                      +|+||.++|.+  ..+.++..+.++ +++++++++.++++++      +++.. .+.. .+++.  +..|..      ..
T Consensus        48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~  122 (308)
T PRK14619         48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGL  122 (308)
T ss_pred             CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCC
Confidence            99999999974  466778888764 6788888876654443      22222 1111 12220  112211      11


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      +...++.+  .+.+..+.+.+++...|..+...+|.-|
T Consensus       123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G  158 (308)
T PRK14619        123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG  158 (308)
T ss_pred             CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence            23333333  3788899999999999988887666434

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.13  E-value=9.1e-10  Score=111.66  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=100.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++||+|||+|.||.+||..|+++|++|++|+++++..+.....-        ..+..-+.  .....++..+++. +.++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~--------~~~~~~~g--~~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAER--------ENREYLPG--VALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhC--------cccccCCC--CcCCCCeEEeCCHHHHHc
Confidence            46899999999999999999999999999999988766543210        00100000  0011224445555 4478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-----HHHHHhhhcC---C-CeeeeccccCcCC---CCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS---K-DRIVGAHFFSPAH---VMP  293 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-----~~~la~~~~~---~-~r~ig~hf~~P~~---~~~  293 (496)
                      ++|+||.|+|+.. + .+++    +.+++++++++.+.++.     ...+++.+..   . ..+++ -|..+..   ..+
T Consensus        74 ~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~  146 (328)
T PRK14618         74 GADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP  146 (328)
T ss_pred             CCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence            9999999999773 2 3333    45567777776666554     4455554422   1 11111 1111111   113


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ...++.+  .+++.++.+.++++..|..+....|
T Consensus       147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~d  178 (328)
T PRK14618        147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRD  178 (328)
T ss_pred             eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCC
Confidence            3344444  4788899999999999988876555

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.13  E-value=2.5e-10  Score=112.52  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=112.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      ++||+|||+|.||.++|..|+++||+|++|.++++.++..... +.+- +.+. |.       .....+..++|++ .++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~-~yLp-~i-------~lp~~l~at~Dl~~a~~   70 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENP-KYLP-GI-------LLPPNLKATTDLAEALD   70 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCc-cccC-Cc-------cCCcccccccCHHHHHh
Confidence            3699999999999999999999999999999999987764321 1000 0000 11       1224577788875 467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc------cHHHHHhhhcCCCeeeeccccCcC-------CCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYSKDRIVGAHFFSPA-------HVM  292 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~------~~~~la~~~~~~~r~ig~hf~~P~-------~~~  292 (496)
                      +||+|+.+||..  ..++++.++..++++++++++.+-++      .++++.+..-...+ ++  +.+.|       ...
T Consensus        71 ~ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~-~~--vLSGPs~A~EVa~g~  145 (329)
T COG0240          71 GADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP-IA--VLSGPSFAKEVAQGL  145 (329)
T ss_pred             cCCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe-EE--EEECccHHHHHhcCC
Confidence            899999999965  57788999988889999888876554      34555443311112 22  22222       134


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      |...++.+  .+++..+.++.+|..--..++...|..|-
T Consensus       146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gv  182 (329)
T COG0240         146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIGV  182 (329)
T ss_pred             CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhhh
Confidence            55555555  47888888888888755566666675553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.13  E-value=2e-09  Score=99.37  Aligned_cols=153  Identities=20%  Similarity=0.223  Sum_probs=104.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ||+|+|+|+|.||+++|..|+++||+|++-.++ +++++...+.+                     ...++..+..++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence            579999999999999999999999999999655 44444432211                     12345556667889


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc----------------cHH-HHHhhhcCCCeeeeccccC-
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS-  287 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~----------------~~~-~la~~~~~~~r~ig~hf~~-  287 (496)
                      .||+||.+||-  +-...+.+++...+. +.|+++.|-.+                +.+ .+++.++.. +++.. |.+ 
T Consensus        60 ~aDVVvLAVP~--~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i  134 (211)
T COG2085          60 LADVVVLAVPF--EAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI  134 (211)
T ss_pred             cCCEEEEeccH--HHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence            99999999984  345677888887766 67776554431                223 334444443 44443 321 


Q ss_pred             --------cCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          288 --------PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       288 --------P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                              +........++.+  .|.+..+.+.++.+.+|..|+.++.
T Consensus       135 ~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         135 PAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             CHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence                    1111334445555  4788999999999999999999874

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=99.13  E-value=9.6e-11  Score=114.65  Aligned_cols=95  Identities=17%  Similarity=0.239  Sum_probs=79.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  205 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS-PM----------------------------------  205 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++..... ....+..|...+..++.|+++++++.+|++||+++
T Consensus       206 -a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~  255 (259)
T TIGR01929       206 -AIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD  255 (259)
T ss_pred             -HHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence             233677888765433 34556667788999999999999999999998765

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=99.13  E-value=1.4e-10  Score=114.34  Aligned_cols=95  Identities=17%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  215 (273)
T PRK07396        171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS-PM----------------------------------  215 (273)
T ss_pred             HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.... ..+...+.|...+..++.|+++++++.+|++||+++
T Consensus       216 -a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~  265 (273)
T PRK07396        216 -ALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPD  265 (273)
T ss_pred             -HHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCC
Confidence             23367888876543 345555678888899999999999999999998764

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.12  E-value=1.6e-09  Score=106.02  Aligned_cols=141  Identities=18%  Similarity=0.213  Sum_probs=102.3

Q ss_pred             HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCChH
Q 010966          162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS  239 (496)
Q Consensus       162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~  239 (496)
                      ||..|.++|  ++|+.+|++++.++.+.           +.|.++.           ..++.+.+++||+||.|+|..  
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~--   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVS--   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HH--
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHH--
Confidence            578888888  79999999999877653           3454432           122256789999999999854  


Q ss_pred             HHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCC------------CCCeEEEEeCCCCCH
Q 010966          240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP  305 (496)
Q Consensus       240 ~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~------------~~~lveiv~~~~t~~  305 (496)
                      ....++.++.++++++++|+..+|..  ++..+...+....+|+|.||+..+.            ....+-+++++.+++
T Consensus        57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence            56789999999999999999888875  3455566555568999999986551            246788889999999


Q ss_pred             HHHHHHHHHHHHcCCceEEec
Q 010966          306 QVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +.++.+.++++.+|..++.+.
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~~  157 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEMD  157 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE--
T ss_pred             HHHHHHHHHHHHCCCEEEEcC
Confidence            999999999999999988874

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=99.12  E-value=1.9e-10  Score=113.52  Aligned_cols=95  Identities=19%  Similarity=0.175  Sum_probs=81.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++|++++.+++++++..+ |.                                  
T Consensus       168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  212 (275)
T PRK09120        168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-PV----------------------------------  212 (275)
T ss_pred             HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHhhcCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRGT  131 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~--~~~~l~~s~-~a~~~i~aF~~kr~~  131 (496)
                       +...+|++++.....++.+.++.|..  .+..++.++ ++++++++|++||..
T Consensus       213 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~~  265 (275)
T PRK09120        213 -VLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKSY  265 (275)
T ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcccC
Confidence             33478899998888889999888764  355678898 899999999998873

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.12  E-value=1.5e-10  Score=104.62  Aligned_cols=105  Identities=23%  Similarity=0.292  Sum_probs=76.0

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV  227 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a  227 (496)
                      ||+|||+|.||.++|..++.+|++|++|.++++.++...+.        .......+.  ......+..++|++ .++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG--IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence            79999999999999999999999999999999877654321        000000010  12224677788874 58999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      |+||.+||...  -+++++++.+++++++++++.+-++
T Consensus        71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999764  5789999999999999888877665

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=99.11  E-value=2.1e-10  Score=113.36  Aligned_cols=96  Identities=23%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  218 (276)
T PRK05864        174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-RP----------------------------------  218 (276)
T ss_pred             HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~-~~~~~l~~E~~~~~-~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++..... ++++.+..|...+. .++.|+++++++.+|++||+++
T Consensus       219 -a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~  271 (276)
T PRK05864        219 -GIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV  271 (276)
T ss_pred             -HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence             234678888776654 68888887875432 3578999999999999998654

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=99.11  E-value=1.8e-10  Score=112.90  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=81.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |.                                  
T Consensus       160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  204 (261)
T PRK11423        160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-PL----------------------------------  204 (261)
T ss_pred             HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~-~~~-~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.... .+. ...++.|...+..++.|+++++++.+|++||+++
T Consensus       205 -a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~  257 (261)
T PRK11423        205 -AIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV  257 (261)
T ss_pred             -HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence             23468888876543 333 5778888899999999999999999999988765

>PLN02921 naphthoate synthase

Probab=99.09  E-value=2.6e-10  Score=114.76  Aligned_cols=95  Identities=19%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  269 (327)
T PLN02921        225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-PT----------------------------------  269 (327)
T ss_pred             HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++..... .......|...+..++.++++++++.+|++||++.
T Consensus       270 -al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~  319 (327)
T PLN02921        270 -AIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPD  319 (327)
T ss_pred             -HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence             233678888766443 33333445578888999999999999999998765

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.08  E-value=2.6e-09  Score=104.53  Aligned_cols=147  Identities=19%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cccccCCCEEEEeccCC
Q 010966          159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN  237 (496)
Q Consensus       159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~  237 (496)
                      |.+||.+|+++||+|++||+++++.+...      .+...+.|.             ..+++ .+.+++||+||.|+|..
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA-------------~~AaS~aEAAa~ADVVIL~LPd~   92 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV-------------KVVSDDKEAAKHGEIHVLFTPFG   92 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC-------------eecCCHHHHHhCCCEEEEecCCH
Confidence            89999999999999999999987654211      011123332             12333 46688999999999966


Q ss_pred             hHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhc----CCCeeeeccccCcCC--CC--CeEEEEeC------CCC
Q 010966          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH--VM--PLLEIVRT------NQT  303 (496)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~----~~~r~ig~hf~~P~~--~~--~lveiv~~------~~t  303 (496)
                      ..+ .+++..+.+.++++++++ ++||+++..+...+.    ...+-+|+..|.|..  .+  .-.-++.+      .-.
T Consensus        93 aaV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A  170 (341)
T TIGR01724        93 KGT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA  170 (341)
T ss_pred             HHH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence            554 455677888889998775 467777765544332    222345555554432  12  11112222      235


Q ss_pred             CHHHHHHHHHHHHHcCCceEEec
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      ++|.+++..++.+..|+.++++.
T Consensus       171 ~ee~i~~~~el~~~~~~~~~~~p  193 (341)
T TIGR01724       171 TEEQISKCVELAKSTGKKAYVVP  193 (341)
T ss_pred             CHHHHHHHHHHHHHhCCCeeecc
Confidence            78999999999999999999875

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08321 naphthoate synthase; Validated

Probab=99.06  E-value=3.7e-10  Score=112.92  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=79.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  244 (302)
T PRK08321        200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-PT----------------------------------  244 (302)
T ss_pred             HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++..... ..+....|.+.+..++.++++++++.+|++||++.
T Consensus       245 -a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~  294 (302)
T PRK08321        245 -AMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPD  294 (302)
T ss_pred             -HHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence             234678888765443 34445568899999999999999999999998765

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=99.06  E-value=3.9e-10  Score=110.15  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~~----------------------------------  202 (256)
T TIGR03210       158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-PT----------------------------------  202 (256)
T ss_pred             HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++......... ...|...+..++.|+++++++.+|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~  252 (256)
T TIGR03210       203 -AIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPE  252 (256)
T ss_pred             -HHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence             2336788877654332111 1235567888999999999999999998755

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=99.05  E-value=4.6e-10  Score=110.05  Aligned_cols=92  Identities=24%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~~----------------------------------  211 (262)
T PRK06144        167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA-PL----------------------------------  211 (262)
T ss_pred             HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|+.++.....    .++.|.+.+..++.++++++++.+|++||++.
T Consensus       212 -a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~  258 (262)
T PRK06144        212 -TLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPK  258 (262)
T ss_pred             -HHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence             233677887765443    34556678888999999999999999988754

>PLN02712 arogenate dehydrogenase

Probab=99.04  E-value=6.4e-09  Score=114.12  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=104.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c-
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-  224 (496)
                      .++|+|||+|.||+++|..|.+.|++|++||++... +.+.           +.|             +...++.++ + 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence            468999999999999999999999999999998543 2111           112             112334443 3 


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHH-hhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCCC-----CCeEE
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE  296 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~~-----~~lve  296 (496)
                      .+||+||.|+|.+  ....++.++. +.++++++|++.+|...  +..+...++...+|++.||+..+..     .....
T Consensus       107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~  184 (667)
T PLN02712        107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF  184 (667)
T ss_pred             cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence            4699999999953  4567777775 56788999887776553  3445555544457999999865531     11112


Q ss_pred             EEe-----CCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       297 iv~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +..     .+....+.++.+.++++.+|..++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            222     222334567788899999999999885

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=99.03  E-value=6.2e-10  Score=108.43  Aligned_cols=91  Identities=16%  Similarity=0.245  Sum_probs=78.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  205 (251)
T PRK06023        161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP-PQ----------------------------------  205 (251)
T ss_pred             HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k  128 (496)
                       +...+|++++... .++.+.+..|.+.+..++.++++++++++|++|
T Consensus       206 -a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        206 -ALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             -HHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence             2236788887653 468888999999999999999999999999874

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.02  E-value=7.4e-09  Score=105.42  Aligned_cols=178  Identities=13%  Similarity=0.110  Sum_probs=112.9

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcceecccCcc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDYE  222 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~  222 (496)
                      +.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+           .+....  .+-.....++..+++++
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~~l~~~i~~t~d~~   72 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDVVLSDTLRATTDFA   72 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCcccCCCeEEECCHH
Confidence            34679999999999999999999999 79999999987665432           110000  00001123455666764


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH------H-HHHhhhcCCCeeeeccccCcCC---C
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------N-LIGERTYSKDRIVGAHFFSPAH---V  291 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~------~-~la~~~~~~~r~ig~hf~~P~~---~  291 (496)
                       .++++|+||.|||..  .-.++++++.++++++++++|.+.++..      + .+.+.++.....+-..|..+..   .
T Consensus        73 ~a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g  150 (341)
T PRK12439         73 EAANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEG  150 (341)
T ss_pred             HHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcC
Confidence             578999999999844  4678899999999888877776666654      3 3444443211111111221111   2


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHH
Q 010966          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFF  338 (496)
Q Consensus       292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~  338 (496)
                      .+...++.+.  +++..+.+.+++..-+..+....|..|...--.+.
T Consensus       151 ~~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alk  195 (341)
T PRK12439        151 YAAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALK  195 (341)
T ss_pred             CCeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHH
Confidence            2333334442  67788889999988888777777866654433333

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=99.01  E-value=8.7e-10  Score=110.02  Aligned_cols=97  Identities=20%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.+++++++...+|.                                  
T Consensus       177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~----------------------------------  222 (296)
T PRK08260        177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPV----------------------------------  222 (296)
T ss_pred             HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChH----------------------------------
Confidence            5799999999999999999999999999999999999998741122                                  


Q ss_pred             CcHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVS--GPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~--~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       +...+|++++.....  ... ....|...+..++.++++++++.+|++||++..
T Consensus       223 -a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f  275 (296)
T PRK08260        223 -SVALTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVF  275 (296)
T ss_pred             -HHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCC
Confidence             234688888776432  333 445688889999999999999999999987653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.01  E-value=1.8e-09  Score=99.98  Aligned_cols=107  Identities=23%  Similarity=0.321  Sum_probs=71.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHh----h--hcceeccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEK----T--ISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~----~--~~~i~~~~  219 (496)
                      |||+|||+|.+|..+|..|+.+||+|+.+|+|++.++...+            |..  .+...+.    .  -+++++++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATT   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhh
Confidence            69999999999999999999999999999999998876432            221  1111111    1  25678888


Q ss_pred             Cccc-ccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       220 ~~~~-~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      +.+. +++||++|.|||.        |+....+...+|.+++.++.+++- -||+++
T Consensus        69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp  124 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP  124 (185)
T ss_dssp             EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred             hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence            8765 8999999999974        334456778889999999887763 445544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=99.00  E-value=6.2e-10  Score=108.11  Aligned_cols=92  Identities=25%  Similarity=0.352  Sum_probs=82.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|+|++++.+.+.+++++++..+ |.                                  
T Consensus       154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  198 (245)
T PF00378_consen  154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-PS----------------------------------  198 (245)
T ss_dssp             HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-HH----------------------------------
Confidence            4789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k  128 (496)
                       +...+|+.++......+.+.+..|...+..++.++++++++++|++|
T Consensus       199 -a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  199 -ALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             -HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence             22378888988888889999999999999999999999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=99.00  E-value=1e-09  Score=107.69  Aligned_cols=94  Identities=23%  Similarity=0.251  Sum_probs=81.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|++  ++.+++.+++++++..+ |.                                  
T Consensus       166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~~----------------------------------  208 (262)
T PRK07509        166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-PD----------------------------------  208 (262)
T ss_pred             HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            578999999999999999999995  37889999999998862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|+.++.....++++.+..|.+.+..++.++++++++.+|++||++.
T Consensus       209 -~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~  259 (262)
T PRK07509        209 -AIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK  259 (262)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence             234788888888788899999999999999999999999999999988654

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=99.00  E-value=6.7e-10  Score=108.11  Aligned_cols=90  Identities=14%  Similarity=0.024  Sum_probs=79.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+||  +++++++.++|++++..+ |.                                  
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~~----------------------------------  201 (249)
T PRK05870        159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-RE----------------------------------  201 (249)
T ss_pred             HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            57899999999999999999999  679999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966           81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (496)
Q Consensus        81 pA~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k  128 (496)
                       +...+|+.++.... .+++++++.|...+..++.|+++++++++|+++
T Consensus       202 -a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        202 -LVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             -HHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence             33478899988777 789999999999999999999999999999874

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.99  E-value=1.3e-09  Score=89.82  Aligned_cols=91  Identities=22%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      ||+|||+|.||.+|+..|..+|   ++|+++ +++++++++..++          .+           ......+..+.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~   59 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA   59 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence            7999999999999999999999   899966 9999988775421          11           111222344667


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +++|+||.|||..  .-.+++.++ ....++.+++|.+.
T Consensus        60 ~~advvilav~p~--~~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   60 QEADVVILAVKPQ--QLPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHTSEEEE-S-GG--GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred             ccCCEEEEEECHH--HHHHHHHHH-hhccCCCEEEEeCC
Confidence            8999999999744  466788888 66678888887654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.99  E-value=2.7e-08  Score=104.89  Aligned_cols=203  Identities=15%  Similarity=0.203  Sum_probs=125.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-----hcceeccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-----ISLLTGVL  219 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~  219 (496)
                      +|||+|||+|.+|..+|..|+.+  |++|+++|++++.++...+....          +.+......     -.++++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~----------~~e~gl~ell~~~~~~~l~~t~   70 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP----------IYEPGLDEVVKQCRGKNLFFST   70 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc----------cCCCCHHHHHHHhhcCCEEEEc
Confidence            46899999999999999999988  47899999999998875422100          111112221     12588888


Q ss_pred             Ccc-cccCCCEEEEeccCC-------------hHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeee
Q 010966          220 DYE-SFKDVDMVIEAIIEN-------------VSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVG  282 (496)
Q Consensus       220 ~~~-~~~~aDlVIeav~e~-------------~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig  282 (496)
                      +++ .+++||++|.|||..             +....++.++|.++++++++|+. .|+.++   +.+...+.....  |
T Consensus        71 ~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~--g  147 (473)
T PLN02353         71 DVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSK--G  147 (473)
T ss_pred             CHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCC--C
Confidence            875 589999999999632             23556777889999998887653 344433   344433321110  1


Q ss_pred             ccc---cCcCCCC---------CeEEEE-eCC--CCCHHHHHHHHHHHHHcCC-ceEEecCc--c--cchhhchH----H
Q 010966          283 AHF---FSPAHVM---------PLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC--T--GFAVNRMF----F  338 (496)
Q Consensus       283 ~hf---~~P~~~~---------~lveiv-~~~--~t~~e~~~~~~~l~~~lGk-~~v~v~d~--~--G~i~nril----~  338 (496)
                      ..|   ++|-...         ..--++ .+.  .+.++..+.+.+++..+-+ .++.+.+.  .  ..++.+.+    .
T Consensus       148 ~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~I  227 (473)
T PLN02353        148 INFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRI  227 (473)
T ss_pred             CCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHH
Confidence            111   2443221         111143 442  2225678888888887742 45555431  1  12333333    2


Q ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          339 PYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       339 ~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      +++||-..+.+ .|+++.+|-+++.
T Consensus       228 af~NEla~lce~~giD~~eV~~~~~  252 (473)
T PLN02353        228 SSVNAMSALCEATGADVSQVSHAVG  252 (473)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence            56899887764 6999999999886

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=98.98  E-value=1.6e-09  Score=105.27  Aligned_cols=93  Identities=18%  Similarity=0.128  Sum_probs=79.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||.+   +++++++.++|++++..+ |.                                  
T Consensus       152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~~----------------------------------  193 (248)
T PRK06072        152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-FQ----------------------------------  193 (248)
T ss_pred             HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999963   457889999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus       194 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  244 (248)
T PRK06072        194 -SYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK  244 (248)
T ss_pred             -HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence             234688888887778899999999999999999999999999999998765

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=98.98  E-value=1.8e-09  Score=105.10  Aligned_cols=94  Identities=16%  Similarity=0.290  Sum_probs=76.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHH-HHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~-a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+|||++++|+||+++||||+|+|+.+  +.+.++ +++++..+ |.                                 
T Consensus       152 l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~-p~---------------------------------  195 (251)
T TIGR03189       152 LLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLS-AS---------------------------------  195 (251)
T ss_pred             HHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCC-HH---------------------------------
Confidence            579999999999999999999997543  566665 67888762 32                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l-~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                        +...+|++++.....++++++ +.|...+..++.|+++++++++|++||+++
T Consensus       196 --a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  247 (251)
T TIGR03189       196 --SLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL  247 (251)
T ss_pred             --HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence              334678888887777887776 478888999999999999999999999765

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.97  E-value=1.5e-08  Score=106.42  Aligned_cols=177  Identities=14%  Similarity=0.148  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc----ccCCCEEEEe
Q 010966          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA  233 (496)
Q Consensus       158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVIea  233 (496)
                      ||..||.+|+++|++|++||+++++.+...+.          .|.         -..++...++++    ++.+|+||.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK---------GKKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            89999999999999999999999988765321          110         011334445543    3358999999


Q ss_pred             ccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeecccc-CcCCC-------CCeEEEEeCCCC
Q 010966          234 IIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT  303 (496)
Q Consensus       234 v~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~-~P~~~-------~~lveiv~~~~t  303 (496)
                      ||....+ .+++..+.+.+.++.||+..+++.+  ..+.++.+..    .|.||+ .|+..       ++  .+++|  .
T Consensus        62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G  132 (459)
T PRK09287         62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G  132 (459)
T ss_pred             CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence            9988665 4566888888888888775443332  3344444432    256665 35443       33  34544  3


Q ss_pred             CHHHHHHHHHHHHHcCCce-------EEecC-cccc---hhhc-hHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 010966          304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AVNR-MFFP---YTQAAFLLVE--RGTDLYLIDRAIT  362 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G~---i~nr-il~~---~~~ea~~l~~--~g~~~~~ID~a~~  362 (496)
                      ++++++.++++++.++...       .++++ +.|.   ++++ +...   .+.|++.+++  .|++++++-+++.
T Consensus       133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~  208 (459)
T PRK09287        133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA  208 (459)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            7999999999999999876       77875 3343   3444 4443   3689998887  4889999988884

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=98.97  E-value=8.2e-10  Score=112.14  Aligned_cols=133  Identities=17%  Similarity=0.088  Sum_probs=82.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHh-----------hhccCCCcchhhc------cc-CCCCCchhH
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALD-----------ILEHRRPWVATLY------KT-DKIEPLGEA   62 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~-----------l~~~~~p~~~~~~------~~-~~~~~~~~~   62 (496)
                      |+|||++++|+||+++||||+|+|++++.+...++++.           +...-....+...      .. .-+.. ...
T Consensus       163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~  241 (342)
T PRK05617        163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG-DTV  241 (342)
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-CCH
Confidence            57999999999999999999999998887763332210           0000000000000      00 00000 000


Q ss_pred             HHHHH--------HHHHHHHhhCC-CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hhcCCC
Q 010966           63 REIFK--------FARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQRGTS  132 (496)
Q Consensus        63 ~~~~~--------~~~~~~~~~~~-~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~-~kr~~~  132 (496)
                      +..+.        .+.+.+++-.. ...+...+|++++.....+++++++.|...+..++.++++++++++|+ +|++.+
T Consensus       242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p  321 (342)
T PRK05617        242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP  321 (342)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence            01111        12222222222 234778899999988888999999999999999999999999999997 663344


Q ss_pred             CC
Q 010966          133 KV  134 (496)
Q Consensus       133 ~~  134 (496)
                      ++
T Consensus       322 ~~  323 (342)
T PRK05617        322 KW  323 (342)
T ss_pred             CC
Confidence            44

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=98.96  E-value=1.6e-09  Score=106.60  Aligned_cols=92  Identities=18%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  214 (268)
T PRK07327        170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-QT----------------------------------  214 (268)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~---~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++....   .+++..+..|    ..++.++++++++.+|++||++.
T Consensus       215 -a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~  264 (268)
T PRK07327        215 -AIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPD  264 (268)
T ss_pred             -HHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCC
Confidence             22356777765322   2344444444    34678999999999999998765

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.95  E-value=2e-09  Score=105.15  Aligned_cols=93  Identities=16%  Similarity=0.076  Sum_probs=76.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|||+++.  .+.+++++++..+ |.                                  
T Consensus       159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p~----------------------------------  201 (255)
T PRK07112        159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-KA----------------------------------  201 (255)
T ss_pred             HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999987653  5778888888762 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.. ...+.++++.|.+.+..++.|+++++++.+|++||++.
T Consensus       202 -a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~  251 (255)
T PRK07112        202 -AVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP  251 (255)
T ss_pred             -HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence             233678887754 44688899999999999999999999999999988654

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=98.95  E-value=2e-09  Score=105.47  Aligned_cols=94  Identities=19%  Similarity=0.245  Sum_probs=82.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||++++  ++.+.+.+++++++..+ |.                                  
T Consensus       164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~-~~----------------------------------  206 (260)
T PRK07827        164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS-PQ----------------------------------  206 (260)
T ss_pred             HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            578999999999999999999974  58999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++.++.|...+..++.++++++++++|++||+++
T Consensus       207 -a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~  257 (260)
T PRK07827        207 -GLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR  257 (260)
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence             334788999988888899999999999999999999999999999988643

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.91  E-value=4.6e-09  Score=90.67  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      -.||+|||+|.+|..++..|.++||+|..+ .++++..+++...+                      ......+..+.+.
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~   67 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR   67 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence            469999999999999999999999998775 67776665543211                      1111222235578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhh--CCCCeeEeccCCcccHHHHHhhhcCCCeeeeccc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF  285 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf  285 (496)
                      ++|+||.+||++  ...++.++|...  ..++++|+=.+..++.+-|............+||
T Consensus        68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            999999999988  356888888877  6788888755555565555554444455666775

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=98.90  E-value=4.6e-09  Score=101.81  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|++   + +++.+++++++..+ |.                                  
T Consensus       150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~-~~----------------------------------  190 (243)
T PRK07854        150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA-PL----------------------------------  190 (243)
T ss_pred             HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC-HH----------------------------------
Confidence            579999999999999999999975   2 37899999998862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++..  .+++++++.|...+..++.++++++++.+|++||++.
T Consensus       191 -a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  239 (243)
T PRK07854        191 -ALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK  239 (243)
T ss_pred             -HHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence             234678888765  6688999999999999999999999999999988754

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.90  E-value=5.2e-09  Score=104.69  Aligned_cols=123  Identities=20%  Similarity=0.292  Sum_probs=78.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||.++|..++..|+ +|+++|++++..+ +..  ...++    .+     .......+++++++++++++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 8999999866433 221  01111    11     01112357888888988999


Q ss_pred             CCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEe--ccCCcccHHHHHhhhcC-CCeeeec
Q 010966          227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       227 aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~--sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      ||+||.++.              .+..+.+++.+++.++. ++.+++  ||...+-..-+....+. +.|++|+
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~  142 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ  142 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence            999999986              24455666677788876 444443  44322222222222222 3566665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.87  E-value=1.6e-09  Score=111.40  Aligned_cols=135  Identities=15%  Similarity=0.188  Sum_probs=81.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHH----------HhhhccC-CCc------chh-h-cccCCCCCchh
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEHR-RPW------VAT-L-YKTDKIEPLGE   61 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a----------~~l~~~~-~p~------~~~-~-~~~~~~~~~~~   61 (496)
                      |+|||++++|++|+++||||+|||++++.+.+.+++          +++.... .+.      ... . .....+... .
T Consensus       168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~  246 (379)
T PLN02874        168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T  246 (379)
T ss_pred             HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence            579999999999999999999999988876332221          1111000 000      000 0 000000000 0


Q ss_pred             HHHHHH------------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q 010966           62 AREIFK------------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF  125 (496)
Q Consensus        62 ~~~~~~------------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~---s~~a~~~i~aF  125 (496)
                      ....+.            ++.+.++.-....| +...+|++++.+...+++++++.|......++.   ++|+++++++|
T Consensus       247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af  326 (379)
T PLN02874        247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL  326 (379)
T ss_pred             HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence            011111            11222222233333 678899999998888999999999888887777   99999999999


Q ss_pred             H-hhcCCCCCCC
Q 010966          126 F-AQRGTSKVPG  136 (496)
Q Consensus       126 ~-~kr~~~~~~~  136 (496)
                      + +|++.+++.+
T Consensus       327 lidK~r~P~w~~  338 (379)
T PLN02874        327 VIDKDNAPKWNP  338 (379)
T ss_pred             EEcCCCCCCCCC
Confidence            7 7744444543

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.86  E-value=7.5e-09  Score=100.69  Aligned_cols=89  Identities=17%  Similarity=0.189  Sum_probs=79.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++++.++|+++++.+ |.                                  
T Consensus       158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  202 (249)
T PRK07110        158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP-RH----------------------------------  202 (249)
T ss_pred             HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF  125 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF  125 (496)
                       +...+|+.++.....++.++++.|...+..++.++++++++...
T Consensus       203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~  246 (249)
T PRK07110        203 -SLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL  246 (249)
T ss_pred             -HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence             23478899998888899999999999999999999999998864

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.84  E-value=5.1e-08  Score=98.81  Aligned_cols=174  Identities=16%  Similarity=0.149  Sum_probs=103.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcceecccCcc-cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~-~~  224 (496)
                      |||+|||+|.||+.+|..|+++|++|++|+++++.++...+.         ..+.  +..   ......+..+++++ .+
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~   68 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVL   68 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHH
Confidence            479999999999999999999999999999998766553221         0010  000   00112344556654 34


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEeccCCcccH-------HHHHhhhcCCCeeeeccccCcC------
Q 010966          225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPA------  289 (496)
Q Consensus       225 -~~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~~~~-------~~la~~~~~~~r~ig~hf~~P~------  289 (496)
                       .++|+||.+||..  .-.++++++.+ ++.+++++++.++++..       +.+...++.. ++..  +..|.      
T Consensus        69 ~~~~Dliiiavks~--~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~  143 (326)
T PRK14620         69 SDNATCIILAVPTQ--QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA  143 (326)
T ss_pred             hCCCCEEEEEeCHH--HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence             5899999999854  35678888887 87888766666666532       3344444321 2111  01121      


Q ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHH
Q 010966          290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY  340 (496)
Q Consensus       290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~  340 (496)
                      ...+....+.+  .+.+..+.+.+++..-+.......|.-|.....++...
T Consensus       144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~  192 (326)
T PRK14620        144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNI  192 (326)
T ss_pred             cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHH
Confidence            11221112233  34556666677776666666666676666544444333

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=98.80  E-value=1.6e-08  Score=98.79  Aligned_cols=94  Identities=24%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.                                  
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  202 (258)
T PRK06190        158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-PA----------------------------------  202 (258)
T ss_pred             HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s---~~a~~~i~aF~~kr~  130 (496)
                       +...+|++++.....+++++++.|...+..++.|   +...+....|.++-+
T Consensus       203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~  254 (258)
T PRK06190        203 -AVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR  254 (258)
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence             3347889998888888999999999999999988   666776677776543

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.80  E-value=1.3e-07  Score=96.52  Aligned_cols=169  Identities=14%  Similarity=0.064  Sum_probs=105.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcceecc
Q 010966          148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLLTGV  218 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~~~  218 (496)
                      +||+|||+|.||+++|..++.+|       ++|.+|.++++. -+...+.++..    ... ..+..   -...+++..+
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~---~~Lp~ni~~t   84 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG---IKLPDNIVAV   84 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC---CcCCCceEEe
Confidence            68999999999999999999998       899999999862 11111222111    000 00110   1133577778


Q ss_pred             cCcc-cccCCCEEEEeccCChHHHHHHHHHHHh--hCCCCeeEeccCCccc--------HHHHHh-hhcCCCeeeecccc
Q 010966          219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIGE-RTYSKDRIVGAHFF  286 (496)
Q Consensus       219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~il~sntS~~~--------~~~la~-~~~~~~r~ig~hf~  286 (496)
                      +|++ .+++||+||.+||..  .-+++++++.+  +++++++++|.+-++.        ++++.. .++.  ++..  ..
T Consensus        85 sdl~eav~~aDiIvlAVPsq--~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~--Ls  158 (365)
T PTZ00345         85 SDLKEAVEDADLLIFVIPHQ--FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCA--LS  158 (365)
T ss_pred             cCHHHHHhcCCEEEEEcChH--HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEE--EE
Confidence            8874 589999999999854  57788999988  7777777777655443        344333 3322  2211  11


Q ss_pred             CcC------CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          287 SPA------HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       287 ~P~------~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      -|-      ...|...++.+  .+.+....++.+|..--..+....|.-|-
T Consensus       159 GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv  207 (365)
T PTZ00345        159 GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIGV  207 (365)
T ss_pred             CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCcccc
Confidence            121      12344445555  37788888888887655666665665553

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=98.80  E-value=1.8e-08  Score=98.62  Aligned_cols=93  Identities=30%  Similarity=0.427  Sum_probs=79.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |++||++++|+||+++||||+++++ +++++.+.+++++++.  +|.                                 
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~~---------------------------------  206 (257)
T COG1024         162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA--PPL---------------------------------  206 (257)
T ss_pred             HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CHH---------------------------------
Confidence            5799999999999999999999985 6999999999999886  122                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~  131 (496)
                        +...+|..++.....++++.+..|...+...+.+++++|++++|++ |++
T Consensus       207 --a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p  255 (257)
T COG1024         207 --ALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP  255 (257)
T ss_pred             --HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence              2236788888877767889999999999988899999999999999 543

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.79  E-value=1.8e-08  Score=98.92  Aligned_cols=96  Identities=26%  Similarity=0.423  Sum_probs=74.8

Q ss_pred             EEEEeC-ChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccc
Q 010966          150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES  223 (496)
Q Consensus       150 V~VIGa-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~  223 (496)
                      |+|||+ |.||.++|..++..|    .+|+++|++++.++.....+++....            . ...+++.++| +++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~------------~-~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEP------------L-ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhh------------c-cCcEEEECCchHHH
Confidence            689999 999999999999999    69999999998877755544332211            0 1235666777 688


Q ss_pred             ccCCCEEEE--------------eccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       224 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      +++||+||+              .+.++..+++++.+++++++ +++++.
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i  116 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII  116 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence            999999999              56778889999999999998 555443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.79  E-value=1.5e-07  Score=95.31  Aligned_cols=166  Identities=17%  Similarity=0.081  Sum_probs=102.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcce
Q 010966          149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL  215 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  215 (496)
                      ||+|||+|.||.++|..++.+|        ++|.+|.+     +++..+.    ++..    .+....-+.  -...+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~----in~~----~~n~~ylpg--i~Lp~~i   70 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI----INTT----HENVKYLPG--IKLPANL   70 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH----HHhc----CCCccccCC--CcCCCCe
Confidence            6999999999999999999999        99999998     4433222    1111    000000000  0123467


Q ss_pred             ecccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--------HHHHh-hhcCCCeeeeccc
Q 010966          216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLIGE-RTYSKDRIVGAHF  285 (496)
Q Consensus       216 ~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--------~~la~-~~~~~~r~ig~hf  285 (496)
                      +.++|++ .+++||+||.+||.+  .-+.++.++.++++++.+++|.+-++..        +++.+ .+..+  +..+  
T Consensus        71 ~at~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~~~l--  144 (342)
T TIGR03376        71 VAVPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--CGVL--  144 (342)
T ss_pred             EEECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--eEEe--
Confidence            7788875 579999999999965  4678899999999888888877655543        33322 23221  1110  


Q ss_pred             cCcC------CCCCeEEEEeCCCCC--HHHHHHHHHHHHHcCCceEEecCccc
Q 010966          286 FSPA------HVMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       286 ~~P~------~~~~lveiv~~~~t~--~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      .-|.      ...|...++.+...+  .+....++.+|..--..+....|..|
T Consensus       145 sGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G  197 (342)
T TIGR03376       145 SGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG  197 (342)
T ss_pred             eCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence            0121      123444455554222  77888888888765555555566555

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.77  E-value=1.3e-07  Score=94.77  Aligned_cols=162  Identities=17%  Similarity=0.118  Sum_probs=97.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||+.+|..|+.+|++|++++++++.++...+           .|... ..+   ....+..+++.+.+++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~   66 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLEDGE---ITVPVLAADDPAELGP   66 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcccCCc---eeecccCCCChhHcCC
Confidence            48999999999999999999999999999998877655321           12100 000   0011223344444589


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeee-eccc-----cCcCC---CC-CeE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHF-----FSPAH---VM-PLL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~i-g~hf-----~~P~~---~~-~lv  295 (496)
                      +|+||.|++...  ...+++++.+.+.++++|++...++.. +.+...+.. .+++ |..+     ..|-.   .. ..+
T Consensus        67 ~d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~  143 (304)
T PRK06522         67 QDLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRL  143 (304)
T ss_pred             CCEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCE
Confidence            999999998542  467888999888888777777667764 445554432 2333 2211     12211   11 112


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      .+-..+. +.+..+.+.+++...|.......|
T Consensus       144 ~ig~~~~-~~~~~~~l~~~l~~~~~~~~~~~d  174 (304)
T PRK06522        144 KIGEPDG-ESAAAEALADLLNAAGLDVEWSPD  174 (304)
T ss_pred             EEeCCCC-CcHHHHHHHHHHHhcCCCCCCChH
Confidence            2222222 224466677777777765444444

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5e-07  Score=84.25  Aligned_cols=183  Identities=16%  Similarity=0.188  Sum_probs=123.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc----cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  223 (496)
                      |+|++||+|.||..|+..|...||+|+.||+|+++.+.+..           .|. +            ..+++    ..
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~ga-~------------~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EGA-T------------GAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cCC-c------------cccCHHHHHHh
Confidence            57999999999999999999999999999999998877542           231 1            12222    23


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCc-----CCC--CCe
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSP-----AHV--MPL  294 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P-----~~~--~~l  294 (496)
                      +...-.|-.+||-. ++..+++.++.+++.++.+|+....+.  ....-+..+.    -.|+||+.-     ++.  ...
T Consensus        57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~----~kgi~flD~GTSGG~~G~~~G~  131 (300)
T COG1023          57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLA----EKGIHFLDVGTSGGVWGAERGY  131 (300)
T ss_pred             cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHH----hcCCeEEeccCCCCchhhhcCc
Confidence            45557788888854 357789999999999888887544332  2222233332    248898741     111  112


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCC---ceEEecC-cccch----hhchHHHH---HHHHHHHHHcC---CCHHHHHHH
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLVERG---TDLYLIDRA  360 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~G~i----~nril~~~---~~ea~~l~~~g---~~~~~ID~a  360 (496)
                      .-+|.+   +.+.++.+.++|+.+--   -..+++. ..|.+    -|-|=+.+   +.|.+.++++.   .+.+++-+.
T Consensus       132 ~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v  208 (300)
T COG1023         132 CLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV  208 (300)
T ss_pred             eEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            223444   78999999999998754   2345554 34543    35555444   57888888764   388888888


Q ss_pred             HH
Q 010966          361 IT  362 (496)
Q Consensus       361 ~~  362 (496)
                      ++
T Consensus       209 W~  210 (300)
T COG1023         209 WN  210 (300)
T ss_pred             Hh
Confidence            87

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.75  E-value=1.6e-07  Score=94.18  Aligned_cols=165  Identities=15%  Similarity=0.136  Sum_probs=98.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCccc-cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~  225 (496)
                      |||+|||+|.||..+|..|+++|++|+++++ ++.++...           +.|. +.....+.. -.....++.+. ..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~   67 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTG   67 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccC
Confidence            4899999999999999999999999999999 66655432           1121 000000000 01112334443 48


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeee-ecccc-----CcCCC----CCe
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV----MPL  294 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~i-g~hf~-----~P~~~----~~l  294 (496)
                      ++|+||.|++...  -.++++++.+.+.++++|++...++.. +.+...++. .+++ |+.++     .|-..    ...
T Consensus        68 ~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~  144 (305)
T PRK12921         68 PFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR  144 (305)
T ss_pred             CCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence            8999999998642  356778888888888877766667753 455555432 2333 33332     22111    011


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  328 (496)
                      +.+-..+....+..+.+.+++...|.......|.
T Consensus       145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di  178 (305)
T PRK12921        145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENI  178 (305)
T ss_pred             EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence            1121222333456667778888888665555553

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.75  E-value=7.8e-07  Score=88.63  Aligned_cols=195  Identities=14%  Similarity=0.155  Sum_probs=127.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc---
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---  223 (496)
                      ...|+|||+|+||+.+|.+++++|++|.+|+|+.++.+...+.          .+         ...++.+..++++   
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~---------~~k~i~~~~sieefV~   63 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RA---------KGKNIVPAYSIEEFVA   63 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Cc---------cCCCccccCcHHHHHH
Confidence            3579999999999999999999999999999999998876532          11         0123455555543   


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhh-cCCCeeeeccccCc---CCCCCeEE
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT-YSKDRIVGAHFFSP---AHVMPLLE  296 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~-~~~~r~ig~hf~~P---~~~~~lve  296 (496)
                       ++.---|+.+|..- .....++++|.+++.++.|++....+  .....-...+ ...-.|+|+----.   +..+|  .
T Consensus        64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--S  140 (473)
T COG0362          64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--S  140 (473)
T ss_pred             HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--C
Confidence             45667777777543 22357889999999999988764433  3332222333 33345666543211   11111  2


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCc----e--EEec-Ccccchh----hchHH---HHHHHHHHHHHcC--CCHHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKT----P--IVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRA  360 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~----~--v~v~-d~~G~i~----nril~---~~~~ea~~l~~~g--~~~~~ID~a  360 (496)
                      +|||  .+++..+.+.+++..+...    |  .+++ ++.|.++    |-|=+   .++.|+..++.++  .|.++|-.+
T Consensus       141 iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~v  218 (473)
T COG0362         141 IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEV  218 (473)
T ss_pred             cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            4455  5889999999999876422    2  2334 4566543    55543   3579999998765  499999988


Q ss_pred             HHhcC
Q 010966          361 ITKFG  365 (496)
Q Consensus       361 ~~~~g  365 (496)
                      +..++
T Consensus       219 F~~WN  223 (473)
T COG0362         219 FEEWN  223 (473)
T ss_pred             HHHhc
Confidence            77544

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=98.74  E-value=6.1e-09  Score=94.89  Aligned_cols=93  Identities=24%  Similarity=0.324  Sum_probs=64.9

Q ss_pred             cccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 010966            2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT   81 (496)
Q Consensus         2 iltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   81 (496)
                      .+.+|.++|+||++|||||.|||.++|++++.+|++++.++ +|.                                   
T Consensus       181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~k-SP~-----------------------------------  224 (282)
T COG0447         181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAK-SPT-----------------------------------  224 (282)
T ss_pred             hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhc-ChH-----------------------------------
Confidence            46789999999999999999999999999999999999987 343                                   


Q ss_pred             cHHHHHHHHHHhhcCCHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           82 HPIVCIDVVEAGVVSGPRAGLQ-KEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        82 A~~~~k~~i~~~~~~~~~~~l~-~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                      |...+|.+++.. ..++ .++. ..-.+-.-...|++++|+..+|++||++-
T Consensus       225 AlR~LK~Afnad-~DGl-aG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd  274 (282)
T COG0447         225 ALRMLKAAFNAD-CDGL-AGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD  274 (282)
T ss_pred             HHHHHHHHhcCC-Cchh-hHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence            111233333321 1121 1211 11112222457999999999999999863

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.73  E-value=2.6e-07  Score=86.15  Aligned_cols=114  Identities=11%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+ |.||.-++..|.++|+.|++                                                 .+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence            48999999 99999999999999999862                                                 36


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCC-C----CeEEEEeCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-M----PLLEIVRTN  301 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~-~----~lveiv~~~  301 (496)
                      ||+||.|+|.+.  -.++++++.      .+|+..+|...  .+.+.   ..+|+|.||+..+.. .    ..+-+ ..+
T Consensus        32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~   97 (197)
T PRK06444         32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND   97 (197)
T ss_pred             CCEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence            899999999653  335555543      25777777664  23222   347999999865332 1    22333 466


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEec
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      .++++.++.+.++++  |..++.+.
T Consensus        98 ~~~~~~~~~~~~l~~--G~~~~~~t  120 (197)
T PRK06444         98 ISRDNYLNEINEMFR--GYHFVEMT  120 (197)
T ss_pred             CCCHHHHHHHHHHHc--CCEEEEeC
Confidence            788888999999988  77777764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.71  E-value=2.3e-07  Score=93.52  Aligned_cols=170  Identities=10%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      +.+||+|||+|.||+.+|..|+++|++|+++.+++.  +...           +.|. +....-......+...++.+..
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~   70 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDM   70 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhc
Confidence            457999999999999999999999999999999863  2211           1121 0000000000112223344456


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCCCeeee-cccc-----CcCC---C-CC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MP  293 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~~r~ig-~hf~-----~P~~---~-~~  293 (496)
                      ..+|+||.|++... + .+++..+.+.+.+++++++...++... .+...++ ++++++ ..++     .|..   . ..
T Consensus        71 ~~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g  147 (313)
T PRK06249         71 PPCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG  147 (313)
T ss_pred             CCCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence            78999999998553 2 467888888888888887777788664 4555554 334443 2222     2321   1 11


Q ss_pred             eEEEEeCCCCC-----HHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          294 LLEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       294 lveiv~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      -+.+-..+..+     .+..+.+.++++..|.......|....
T Consensus       148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~  190 (313)
T PRK06249        148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQA  190 (313)
T ss_pred             cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHH
Confidence            12222222222     466777888889988877666664443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.66  E-value=3.5e-08  Score=92.55  Aligned_cols=104  Identities=25%  Similarity=0.326  Sum_probs=71.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--  221 (496)
                      .+|+|||+|.||+.+|..|++.|+ +|+++|.+   ++.+.+.....       ...|....+.....+.++.+..+.  
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~-------~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKA-------SQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCCh-------hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            589999999999999999999999 69999999   65554421000       011222222223333333222221  


Q ss_pred             -----------ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          222 -----------ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       222 -----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                                 +.++++|+||+| .++++.|..++.++....+...+++
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                       136789999999 6999999999999988877777665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.64  E-value=4.9e-07  Score=80.02  Aligned_cols=100  Identities=28%  Similarity=0.393  Sum_probs=68.3

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cceecccCcc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYE  222 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~  222 (496)
                      +||+|||+ |..|..+|..+...++  +++++|++++.++.....+.+..               ...  .......+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~---------------~~~~~~~~i~~~~~~   65 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHAS---------------APLPSPVRITSGDYE   65 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHH---------------HGSTEEEEEEESSGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhh---------------hhccccccccccccc
Confidence            59999999 9999999999999876  89999999987665444333221               111  1122236789


Q ss_pred             cccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          223 SFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       223 ~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ++++||+||.+.-.              +..+.+++...+.++. ++.+++..|.
T Consensus        66 ~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtN  119 (141)
T PF00056_consen   66 ALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTN  119 (141)
T ss_dssp             GGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SS
T ss_pred             ccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCC
Confidence            99999999987621              2335556666788887 4554443333

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.61  E-value=1.4e-06  Score=84.53  Aligned_cols=167  Identities=17%  Similarity=0.111  Sum_probs=116.5

Q ss_pred             CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccCCCEEEEeccCChHHHHHHHHHH
Q 010966          170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL  248 (496)
Q Consensus       170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l  248 (496)
                      -++|+++++++++++...+.          .|             +..+.+. +.+++||+||.||+  +..-.+++.++
T Consensus         9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l   63 (245)
T TIGR00112         9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL   63 (245)
T ss_pred             CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence            36899999999886553221          01             1223333 34678999999998  44567888888


Q ss_pred             HhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEE-EeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       249 ~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lvei-v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ...+.++.+|+|.++++++++|...++...+++.++|+.|......+.. ..++.++++..+.+..+|..+|+...+ .+
T Consensus        64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E  142 (245)
T TIGR00112        64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE  142 (245)
T ss_pred             hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence            8777778899999999999999988865567999999988877665554 467788899999999999999976644 33


Q ss_pred             c--ccc-hhhchH---HHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010966          328 C--TGF-AVNRMF---FPYTQAAF--LLVERGTDLYLIDRAIT  362 (496)
Q Consensus       328 ~--~G~-i~nril---~~~~~ea~--~l~~~g~~~~~ID~a~~  362 (496)
                      .  ..+ .+.-..   ..++.+++  ..+..|+++++..+...
T Consensus       143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~  185 (245)
T TIGR00112       143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA  185 (245)
T ss_pred             HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1  111 011111   12233443  24567898888887775

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=98.55  E-value=1.3e-07  Score=85.31  Aligned_cols=96  Identities=21%  Similarity=0.292  Sum_probs=76.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||.||+++||+..|||.+|||+++|..++..+++.+-..+..                   .+.             
T Consensus       188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra-------------------v~s-------------  235 (287)
T KOG1682|consen  188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA-------------------VIS-------------  235 (287)
T ss_pred             HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-------------------HHH-------------
Confidence            689999999999999999999999999999999999888765211                   111             


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                          .-|+-......++..+++....+-..+-++-.|.+|+|.+|++||.+.
T Consensus       236 ----lgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~  283 (287)
T KOG1682|consen  236 ----LGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN  283 (287)
T ss_pred             ----HHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence                344555555556666777777777777788889999999999998654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.53  E-value=3.1e-07  Score=92.89  Aligned_cols=100  Identities=17%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||+++|..+...|++|++||++++.....                            +..+.++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            489999999999999999999999999999997542110                            0122344 35789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+..+.+++.+.+++++++++.+-+  +.-..+.+.+.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            99999999999887877778888889999988765544  34567777774

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.53  E-value=8.8e-06  Score=76.63  Aligned_cols=147  Identities=16%  Similarity=0.157  Sum_probs=100.2

Q ss_pred             hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCcccccCCCEEEEeccCC
Q 010966          159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESFKDVDMVIEAIIEN  237 (496)
Q Consensus       159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aDlVIeav~e~  237 (496)
                      |+.+|..++.+||+|++.|.|.+-.+..      .+++.-..|             +.. ++|.++++.+.+.|.-.|-.
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG   93 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG   93 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence            8899999999999999999998765542      122222223             223 44568899999999988754


Q ss_pred             hHHHHHHHHHHHhhCCCCeeEeccCCcccHH----HHHhhhcCCCeeeeccccCcCCC----CCeEEEEeCCC------C
Q 010966          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTNQ------T  303 (496)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~----~la~~~~~~~r~ig~hf~~P~~~----~~lveiv~~~~------t  303 (496)
                      . ..-.+.++|.++++.+++|+ ||-+.|+-    .+...+..+.+-+|+..|.|...    ..-.-++.+..      .
T Consensus        94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA  171 (340)
T COG4007          94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA  171 (340)
T ss_pred             h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence            2 23367788999999999885 45455443    44445555656778777766432    11111333322      3


Q ss_pred             CHHHHHHHHHHHHHcCCceEEec
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +++.+++..++++++||.++++.
T Consensus       172 TeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         172 TEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             cHHHHHHHHHHHHhcCCceEecC
Confidence            68899999999999999999875

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.53  E-value=5.7e-06  Score=82.81  Aligned_cols=166  Identities=18%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |||+|+|+|.||+-++..|+++|++|+++-+++. +++..           +.|..-...............+.+.+..+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence            5899999999999999999999988998888875 44432           22321110000011112223344567799


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH-HHhhhcCCCeeeeccccC-----cCCC---C-CeEEE
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGAHFFS-----PAHV---M-PLLEI  297 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~-la~~~~~~~r~ig~hf~~-----P~~~---~-~lvei  297 (496)
                      |+||.++...  .-.+.+..+.++++++++|.+.-.++...+ +.+..+....+.|+-+..     |.+.   . .-+.+
T Consensus        69 Dlviv~vKa~--q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVKAY--QLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEeccc--cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            9999998533  345788999999999998888777886655 555444333355554442     2111   1 12222


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      -......++..+.+.+.|+..|....+..|
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d  176 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPD  176 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence            222333446788888888777766655444

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.50  E-value=6.4e-07  Score=89.82  Aligned_cols=96  Identities=22%  Similarity=0.301  Sum_probs=66.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|.++|..++..|.  +++|+|++++.++.....+.+..      ...       ....++.++++++++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence            599999999999999999999886  79999999876655433332211      000       012466567899999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCe
Q 010966          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHC  256 (496)
Q Consensus       226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~  256 (496)
                      +||+||.+.-.              +..+.+++...+.++.+...
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~  115 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI  115 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            99999986521              22345556667888865444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.49  E-value=7.6e-07  Score=89.36  Aligned_cols=98  Identities=23%  Similarity=0.300  Sum_probs=67.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|+++|..++..|  ++|+++|++++.++.....+.+...   ..+         ....+. +.++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~---~~~---------~~~~i~-~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALA---FLP---------SPVKIK-AGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhh---ccC---------CCeEEE-cCCHHHhC
Confidence            48999999999999999999999  5899999999887665444332210   000         001122 35677899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      +||+||.++..              +..+.+++...+.++.+ ++++.
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi  114 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL  114 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            99999998743              33345666677888766 44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=98.48  E-value=2.4e-07  Score=92.09  Aligned_cols=81  Identities=23%  Similarity=0.292  Sum_probs=68.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.                                  
T Consensus       180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  224 (288)
T PRK08290        180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-PF----------------------------------  224 (288)
T ss_pred             HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 010966           81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET  117 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~-~~~~~l~~E~~~~~~l~-~s~~  117 (496)
                       +...+|+.++..... ++++++..|...+.... ++++
T Consensus       225 -a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        225 -GLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             -HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence             234678888877665 68999999998888877 6776

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.45  E-value=1.8e-07  Score=85.28  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=83.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCc----hHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ   76 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~----~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (496)
                      +|+||+.+++.||..+||||.||...    ...+.|+++|+++.... |.                              
T Consensus       188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-Pi------------------------------  236 (291)
T KOG1679|consen  188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-PI------------------------------  236 (291)
T ss_pred             HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-ch------------------------------
Confidence            58999999999999999999999765    56667888888888753 43                              


Q ss_pred             CCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        77 ~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                           |...+|-+|+.+.+.++..++..|..-+++..-+.+--+++.+|.+||++.
T Consensus       237 -----avr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~  287 (291)
T KOG1679|consen  237 -----AVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPE  287 (291)
T ss_pred             -----hhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Confidence                 344788899999999999999999999999999999999999999999765

>PLN02602 lactate dehydrogenase

Probab=98.40  E-value=1.1e-06  Score=89.29  Aligned_cols=99  Identities=26%  Similarity=0.400  Sum_probs=68.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cceecccCccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~  223 (496)
                      +||+|||+|.+|+++|..++..|.  +++|+|++++.++.....+.+..               ..+  ..+..++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~  102 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV  102 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence            599999999999999999998887  79999999877665443332211               111  24444567889


Q ss_pred             ccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE-ecc
Q 010966          224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL-ASN  261 (496)
Q Consensus       224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il-~sn  261 (496)
                      +++||+||.+.-.              +..+.+++...+.+++++..++ +||
T Consensus       103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9999999988521              2234456666777776554433 344

>PRK15076 alpha-galactosidase; Provisional

Probab=98.40  E-value=1.6e-06  Score=90.65  Aligned_cols=77  Identities=23%  Similarity=0.300  Sum_probs=54.9

Q ss_pred             ceEEEEEeCChhhHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      |+||+|||+|.||.+.+.  .++    ..|.+|+++|+++++++.+...++..+...   +         ...+++.++|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD   68 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD   68 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence            369999999999966655  333    346799999999999886554444333221   1         1135777888


Q ss_pred             -cccccCCCEEEEecc
Q 010966          221 -YESFKDVDMVIEAII  235 (496)
Q Consensus       221 -~~~~~~aDlVIeav~  235 (496)
                       .+++++||+||+++-
T Consensus        69 ~~eal~dADfVv~ti~   84 (431)
T PRK15076         69 RREALQGADYVINAIQ   84 (431)
T ss_pred             HHHHhCCCCEEeEeee
Confidence             578999999999873

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.39  E-value=1.5e-06  Score=87.15  Aligned_cols=97  Identities=28%  Similarity=0.405  Sum_probs=66.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |||+|||+|.+|.++|..++..|  .+|+++|++++.++.....+.+.       .....     . ..+ .++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~-----~-~~i-~~~d~~~l~   66 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK-----P-VRI-YAGDYADCK   66 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC-----C-eEE-eeCCHHHhC
Confidence            48999999999999999999999  58999999988765322221110       00000     0 122 356788899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE
Q 010966          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL  258 (496)
Q Consensus       226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il  258 (496)
                      +||+||.+++.              +..+-+++..++.++.+.+.++
T Consensus        67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            99999999864              3334556667788877555444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=98.37  E-value=3.2e-07  Score=88.15  Aligned_cols=73  Identities=25%  Similarity=0.312  Sum_probs=60.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|+|++++.+.+.+++++++..+ |.                                  
T Consensus       156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  200 (229)
T PRK06213        156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-MG----------------------------------  200 (229)
T ss_pred             HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-HH----------------------------------
Confidence            4789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF  109 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~  109 (496)
                       +...+|++++.....++.++++.|...|
T Consensus       201 -a~~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        201 -AHAATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             -HHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence             3347888888877777788887777654

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.37  E-value=1.5e-07  Score=93.02  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=69.3

Q ss_pred             ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCC---cchhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (496)
Q Consensus       329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p---~GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (496)
                      +--++++++.+++|||+++++||+  ++.++|.+.. |+|||   .|||.|.|..|++.++..++.+..     +.|+.+
T Consensus       293 ~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~  367 (380)
T KOG1683|consen  293 DEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQL  367 (380)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHH
Confidence            345899999999999999999998  9999999998 99999   499999999999999999988765     678888


Q ss_pred             HHHHHhcC
Q 010966          403 IPIMQEDK  410 (496)
Q Consensus       403 l~~~~~~G  410 (496)
                      +.++..+|
T Consensus       368 l~~~a~~~  375 (380)
T KOG1683|consen  368 LKDHAKSG  375 (380)
T ss_pred             HHHHHhhh
Confidence            88888775

>PRK08788 enoyl-CoA hydratase; Validated

Probab=98.35  E-value=1.7e-06  Score=85.69  Aligned_cols=90  Identities=16%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||++|||||+|+|++++.+++.+++++++..  |.                                  
T Consensus       185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~----------------------------------  228 (287)
T PRK08788        185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN----------------------------------  228 (287)
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence            579999999999999999999999999999999999999964  22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHh
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE-TCKSLVHIFFA  127 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~-~a~~~i~aF~~  127 (496)
                       ++..+|+..+.....++++.++.|...+..++++. ..++-+..|..
T Consensus       229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence             22345555555555678889999887777655544 45666777653

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.35  E-value=2.9e-06  Score=86.03  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||+++..... .           ..+             ... .++ +.+++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence            69999999999999999999999999999998643211 0           111             111 234 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+.+  +.-..+.+.+.
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~  255 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK  255 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence            99999999988877766667777889999988744433  34456777764

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.33  E-value=8.7e-07  Score=91.40  Aligned_cols=88  Identities=14%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|++|+++||||++||++++ +++.+++.+++..+ |.                                  
T Consensus       196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p~----------------------------------  239 (401)
T PLN02157        196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-PS----------------------------------  239 (401)
T ss_pred             HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999998 67778888887642 21                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~  126 (496)
                       +...+|+.+... ..+...++..|...+..++.+++.++.+.+|.
T Consensus       240 -av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~  283 (401)
T PLN02157        240 -VVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE  283 (401)
T ss_pred             -HHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence             223566666544 23456777888899999999999999999993

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.31  E-value=9.1e-06  Score=81.56  Aligned_cols=172  Identities=14%  Similarity=0.041  Sum_probs=99.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||+-+|..|+++|++|+++++..+.++...+          +.|. +.... ....-++. ..+.+....
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~   70 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP   70 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence            58999999999999999999999999999998776654321          1121 10000 00000011 111233467


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCCCeeeecccc-----CcCCC---CCeEEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFF-----SPAHV---MPLLEI  297 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~~r~ig~hf~-----~P~~~---~~lvei  297 (496)
                      +|+||.|+... + -.+.++.+.+++.+++++++...++... .+...++...-+.|..++     .|-+.   .... +
T Consensus        71 ~D~viv~vK~~-~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~-~  147 (305)
T PRK05708         71 IHRLLLACKAY-D-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF-T  147 (305)
T ss_pred             cCEEEEECCHH-h-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE-E
Confidence            89999999543 2 3367788999999999888888887654 455555432223333332     33211   1111 1


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhc
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR  335 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nr  335 (496)
                      .-|.. +.+..+.+.+++...|.......|..+.+...
T Consensus       148 ~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~K  184 (305)
T PRK05708        148 WLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRK  184 (305)
T ss_pred             EEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHH
Confidence            12221 22345566677777676555444544443333

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.30  E-value=2.4e-06  Score=84.56  Aligned_cols=145  Identities=19%  Similarity=0.203  Sum_probs=86.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|||.|.||.++|..|...|++|+++|+.....+.+.           ..|             ....+-.+.++.|
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~A   72 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRTA   72 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhcC
Confidence            6899999999999999999999999999987643322211           112             1112222457899


Q ss_pred             CEEEEeccCChHHHHHHH-HHHHhhCCCCeeEeccCCcccHHHHHhhhcCCC--eeeeccccCcCC----------CCCe
Q 010966          228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMPL  294 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~--r~ig~hf~~P~~----------~~~l  294 (496)
                      |+|+.++|. .+.+ .++ .++.+.++++++|+- +-+..+.-  ..+..|.  .++=+-|-.|-+          ..|.
T Consensus        73 DVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~--~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~  147 (335)
T PRK13403         73 QVVQMLLPD-EQQA-HVYKAEVEENLREGQMLLF-SHGFNIHF--GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPA  147 (335)
T ss_pred             CEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEEE-CCCcceec--CceeCCCCCeEEEECCCCCChHHHHHHHcCCCcee
Confidence            999999996 4444 555 568888999987752 22333310  0111111  122222222222          1233


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP  322 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~  322 (496)
                      +.-|. ...+-.+.+.+..+...+|...
T Consensus       148 l~av~-qd~sg~a~~~ala~a~~iG~~r  174 (335)
T PRK13403        148 LVAVH-QDATGTALHVALAYAKGVGCTR  174 (335)
T ss_pred             EEEEE-ECCCCcHHHHHHHHHHHcCCCc
Confidence            32222 2334456788888889988763

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.30  E-value=4.4e-06  Score=79.06  Aligned_cols=151  Identities=13%  Similarity=0.137  Sum_probs=112.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++|++||+|.|-.+|+..+...|.    +++.+-.+......-          ....|            .-+..++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~g------------~~~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEALG------------VKTVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcCC------------ceeeechHHH
Confidence            479999999999999999999986    455554422211110          00111            1223444667


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ  302 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~~  302 (496)
                      ++.+|+++.++.  +.+...++.++...+..+.|+.|...+.+++.+...+..+.|++..+++.|........ +..+..
T Consensus        59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            889999999983  44555666776665667779999999999999999998778999999999988776666 457778


Q ss_pred             CCHHHHHHHHHHHHHcCCce
Q 010966          303 TSPQVIVDLLDIGKKIKKTP  322 (496)
Q Consensus       303 t~~e~~~~~~~l~~~lGk~~  322 (496)
                      ...+..+.+..++..+|+..
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~  156 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCE  156 (267)
T ss_pred             cchhhHHHHHHHHHhcCcce
Confidence            88888899999999999743

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.29  E-value=3.1e-06  Score=84.67  Aligned_cols=96  Identities=24%  Similarity=0.383  Sum_probs=67.5

Q ss_pred             EEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |+|||+|.+|+++|..++..|  .+++++|++++.++....++.+....      .       ...++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~------~-------~~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF------L-------ATGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc------c-------CCCeEEECCCHHHhCCC
Confidence            689999999999999999998  58999999998876654443322110      0       01234445668899999


Q ss_pred             CEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       228 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      |+||.++..              +..+.+++..++.+++ |+++++
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi  112 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL  112 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            999998742              2334556667788887 455443

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.27  E-value=5.1e-06  Score=83.54  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=65.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|..+|..++..|+  +++++|++++.++.....+.+...      ..       ....+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~------~~-------~~~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP------FT-------SPTKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc------cc-------CCeEEE-eCCHHHhC
Confidence            599999999999999999999998  899999998877654444332210      00       001233 46788999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE
Q 010966          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL  258 (496)
Q Consensus       226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il  258 (496)
                      +||+||.+.-.              +..+.+++..++.++.+ ++++
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~v  118 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIF  118 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEE
Confidence            99999987521              33344556666777655 4443

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=98.26  E-value=1.5e-06  Score=87.07  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~   42 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..
T Consensus       188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~  229 (302)
T PRK08272        188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV  229 (302)
T ss_pred             HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence            579999999999999999999999999999999999999986

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.25  E-value=2.3e-06  Score=76.73  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=71.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|+|||+|.||.+++..+...| ++|+++|++++..+...+.+..       .+ +          ... ..+. +.++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~~   80 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELLA   80 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhccc
Confidence            58999999999999999999986 7899999999877654332110       00 0          011 1222 3378


Q ss_pred             CCCEEEEeccCChH-HHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhc-CCCeeeecccc
Q 010966          226 DVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVGAHFF  286 (496)
Q Consensus       226 ~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~-~~~r~ig~hf~  286 (496)
                      ++|+||.|+|.... +....+.  ...+++++++...++....+.+.+... ...+++..|.+
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~  141 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEM  141 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHH
Confidence            99999999987653 1111111  123567777765544333234444432 22345554443

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07574 formate dehydrogenase; Provisional

Probab=98.24  E-value=1.2e-05  Score=82.57  Aligned_cols=104  Identities=15%  Similarity=0.109  Sum_probs=74.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++....+...           ..|             ++...+++ .++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence            5899999999999999999999999999999763211100           001             11223443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~  299 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE  299 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence            99999999998877665546677888999988744333  33456777764

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.24  E-value=3.1e-06  Score=75.26  Aligned_cols=87  Identities=21%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++           .+.|             +...+-.|+++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~G-------------f~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADG-------------FEVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCC-------------CeeccHHHHHhh
Confidence            6899999999999999999999999999998876 33332           2333             222333466899


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhCCCCeeEec
Q 010966          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILAS  260 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~s  260 (496)
                      +|+|+..+|+.  .-.++| ++|.+.++++..+.-
T Consensus        61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF   93 (165)
T ss_dssp             -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE
T ss_pred             CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe
Confidence            99999999965  345777 789999999997753

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.22  E-value=9.1e-06  Score=81.57  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++++.....                          .......++ +.+++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence            689999999999999999999999999999875431100                          000011233 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++...  ..+.-+.|.+.+.
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~  241 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD  241 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence            999999999998877776677778889999886433  2345567777774

>PLN03139 formate dehydrogenase; Provisional

Probab=98.22  E-value=1.8e-05  Score=81.29  Aligned_cols=130  Identities=15%  Similarity=0.138  Sum_probs=86.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++....+...           +.|             +....+++ .+++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence            6899999999999999999999999999998753211100           011             11233454 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeecccc--CcC------CCCCeE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA------HVMPLL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~--~P~------~~~~lv  295 (496)
                      ||+|+.++|...+.+.-+-+++.+.++++++|+..+-+  +.-+.+.+.+.. .-...++--|  .|.      +.++-+
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv  335 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH  335 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence            99999999988887766656788889999988744333  334567777642 2223344333  232      235666


Q ss_pred             EEEeCC
Q 010966          296 EIVRTN  301 (496)
Q Consensus       296 eiv~~~  301 (496)
                      .+.|+-
T Consensus       336 ilTPHi  341 (386)
T PLN03139        336 AMTPHI  341 (386)
T ss_pred             EEcccc
Confidence            666653

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.22  E-value=3.8e-06  Score=83.20  Aligned_cols=99  Identities=28%  Similarity=0.394  Sum_probs=65.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|+++|..++..++  +++++|++++.++.-...+.+...            ......++..+.++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence            489999999999999999987764  899999996654432222211100            000112333334589999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       226 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++|+|+.+.  |.            +..+.+++-+++.+.++ +.++.
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivl  115 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVL  115 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEE
Confidence            999999886  32            34466666777887776 45443

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.18  E-value=6.8e-06  Score=82.22  Aligned_cols=70  Identities=20%  Similarity=0.345  Sum_probs=52.2

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh---c-ceecccCcc
Q 010966          149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI---S-LLTGVLDYE  222 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~---~-~i~~~~~~~  222 (496)
                      ||+|||+|.+|.++|..++..|.  +++|+|++++.++.....+.+..               ...   . ++. +.+++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~---------------~~~~~~~~~i~-~~~y~   64 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT---------------ALTYSTNTKIR-AGDYD   64 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh---------------ccCCCCCEEEE-ECCHH
Confidence            79999999999999999999887  79999999877655333322211               111   1 233 46789


Q ss_pred             cccCCCEEEEec
Q 010966          223 SFKDVDMVIEAI  234 (496)
Q Consensus       223 ~~~~aDlVIeav  234 (496)
                      ++++||+||.+.
T Consensus        65 ~~~~aDivvita   76 (307)
T cd05290          65 DCADADIIVITA   76 (307)
T ss_pred             HhCCCCEEEECC
Confidence            999999999876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.16  E-value=1.7e-05  Score=79.20  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=87.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++...                 .+. .           ....+++ .+++
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence            68999999999999999888789999999987421                 010 0           0012343 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhcC-CCeeeecccc--CcC---CCCCeEEEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEIV  298 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~~-~~r~ig~hf~--~P~---~~~~lveiv  298 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.  .+.-..+.+.+.. .....++--|  .|.   +..+-+.+.
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT  253 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS  253 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence            9999999998887766555667777899998874332  2344677777743 2333444333  332   234666677


Q ss_pred             eC-C-CCCHHHHHH
Q 010966          299 RT-N-QTSPQVIVD  310 (496)
Q Consensus       299 ~~-~-~t~~e~~~~  310 (496)
                      |+ . .++++..+.
T Consensus       254 PHi~g~~t~e~~~~  267 (303)
T PRK06436        254 PHVAGGMSGEIMQP  267 (303)
T ss_pred             CccccccCHHHHHH
Confidence            77 2 245554443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.15  E-value=4.2e-06  Score=84.84  Aligned_cols=101  Identities=16%  Similarity=0.048  Sum_probs=69.7

Q ss_pred             eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      ++|+|||+|.||.++|..++ ..|++|+.||+++.....              .+             +...++++ .++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence            58999999999999999994 468899999998643210              00             11233443 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY  275 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~  275 (496)
                      +||+|+.++|.....+.-+=.++.+.++++++|+..+.+..  ...+.+.+.
T Consensus       200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  251 (332)
T PRK08605        200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD  251 (332)
T ss_pred             hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            99999999998776554222456677899998875544433  346666663

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=98.12  E-value=4.9e-06  Score=76.81  Aligned_cols=98  Identities=18%  Similarity=0.090  Sum_probs=81.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      +.+|++.++|.||++.|||.+|+|+ ++|++.+..+|+.++.+ +|.                                 
T Consensus       191 lafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~K-Spv---------------------------------  236 (292)
T KOG1681|consen  191 LAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASK-SPV---------------------------------  236 (292)
T ss_pred             HHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccC-Cce---------------------------------
Confidence            3589999999999999999999986 67999999999999987 354                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~  134 (496)
                        |+..+|+.+..+.+.+.+++|.+-...-...+.|+|.-..+.+-++|+++..|
T Consensus       237 --aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tf  289 (292)
T KOG1681|consen  237 --AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTF  289 (292)
T ss_pred             --eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence              33468888989999999999998877777777788888888888887665544

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.12  E-value=6.9e-06  Score=73.36  Aligned_cols=114  Identities=22%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCc-ccccCC
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDV  227 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a  227 (496)
                      |+|+|+|.||.-+|..|+++|++|+++++++ .++...           +.|. ++..+-+..........+. +....+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCC
Confidence            7899999999999999999999999999998 655422           1221 1110000000011111111 246789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCC
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSK  277 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~  277 (496)
                      |+||.|+....  -.+++..+.+++.+++.|++...++... .+.+..+.+
T Consensus        69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~  117 (151)
T PF02558_consen   69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP  117 (151)
T ss_dssp             SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred             cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence            99999996432  3467888999999998777777777754 455555443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.11  E-value=9e-06  Score=81.64  Aligned_cols=123  Identities=18%  Similarity=0.197  Sum_probs=76.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +||+|||+ |..|..++..++..|+  +|+++|+++  +.++.....+.+.   ....+         ...+++.+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~---~~~~~---------~~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA---LAAAG---------IDAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc---hhccC---------CCcEEEECCCHH
Confidence            58999998 9999999999999997  499999965  4433322222110   01111         012466666788


Q ss_pred             cccCCCEEEEecc--C----C-h-------HHHHHHHHHHHhhCCCCeeEeccCCcccHHH--HHhhhcC-CCeeeec
Q 010966          223 SFKDVDMVIEAII--E----N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA  283 (496)
Q Consensus       223 ~~~~aDlVIeav~--e----~-~-------~~k~~v~~~l~~~~~~~~il~sntS~~~~~~--la~~~~~-~~r~ig~  283 (496)
                      ++++||+||.++.  .    + .       .+-+++...+.+.++ +.++...+++.++..  +....+. +.|++|+
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence            8999999999983  1    1 1       334555666777764 666666666665432  2222232 3566665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.03  E-value=4.6e-05  Score=82.06  Aligned_cols=130  Identities=16%  Similarity=0.084  Sum_probs=84.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||+.... +...           +.|             +...++++ .+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence            68999999999999999999999999999985221 1100           111             11223443 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeecccc--CcC-----CCCCeEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLLE  296 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~--~P~-----~~~~lve  296 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +.-..+.+.+.. .-+..++--|  .|+     +..+-|.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  273 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI  273 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence            99999999988776554435566678999988644333  445677777743 2233444433  333     2345566


Q ss_pred             EEeCCC
Q 010966          297 IVRTNQ  302 (496)
Q Consensus       297 iv~~~~  302 (496)
                      +.|+-.
T Consensus       274 ~TPHia  279 (525)
T TIGR01327       274 ATPHLG  279 (525)
T ss_pred             ECCCcc
Confidence            666643

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.01  E-value=4.6e-05  Score=74.99  Aligned_cols=178  Identities=19%  Similarity=0.182  Sum_probs=105.4

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhC--CC-----cEEEEeCCHHHHHH---HHHHHHHHHHHHHHc-CCCCHHHHHhhhc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEA---GIGRVRANLQSRVKK-GKMTQEKFEKTIS  213 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~---~~~~i~~~~~~~~~~-g~~~~~~~~~~~~  213 (496)
                      +...||+|||+|+||++||..+..+  ++     +|.+|-...+.-..   .-+-|+..    .+. ..+..   -....
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~----heN~KYlpg---~~lP~   91 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSR----HENVKYLPG---IKLPE   91 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccc----cccccccCC---ccCCC
Confidence            3457999999999999999988764  22     78888776543331   11222211    110 00110   12235


Q ss_pred             ceecccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH----------H-HHHhhhcCCCee-
Q 010966          214 LLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL----------N-LIGERTYSKDRI-  280 (496)
Q Consensus       214 ~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~----------~-~la~~~~~~~r~-  280 (496)
                      ++..++|+ +++.++|++|.++|..  ...+++++|..++++++..+|-+-++..          + -|...++-|-.+ 
T Consensus        92 NvvAv~dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL  169 (372)
T KOG2711|consen   92 NVVAVPDLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVL  169 (372)
T ss_pred             CeEecchHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceee
Confidence            67778887 5688999999999966  4668999999999999988887655442          2 233444444322 


Q ss_pred             eeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          281 VGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       281 ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      .|..+-+-+..-...|-.-+-..+.+.-..+..+|++--..+.++.|..|-
T Consensus       170 ~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~V  220 (372)
T KOG2711|consen  170 MGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGV  220 (372)
T ss_pred             cCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHh
Confidence            222221111122233333232223333335777888777777777775553

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=98.00  E-value=4.9e-05  Score=79.17  Aligned_cols=103  Identities=16%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee
Q 010966          147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (496)
                      .-||+|||+ |.+|..+|..++..       |+  +++++|++++.++...-.+.+...              ..+..+.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~  165 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS  165 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence            359999999 99999999999988       76  899999999987765444332211              1112333


Q ss_pred             -cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       217 -~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                       .+.+++++++||+||.+.-              .+..+.+++...|.++..++++++..+.
T Consensus       166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence             3467899999999998751              1233455666667775566776654443

>PRK05442 malate dehydrogenase; Provisional

Probab=98.00  E-value=1.7e-05  Score=80.06  Aligned_cols=104  Identities=15%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L  214 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~  214 (496)
                      ..||+|||+ |.+|.++|..++..|+       +++|+|++++  .++.....+.+...              ....  .
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~   69 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV   69 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence            469999998 9999999999988765       7999999653  23322222211110              0111  2


Q ss_pred             eecccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       215 i~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      ++ +.+++++++||+||.+.-              .+..+.+++..+|.++.++++++...|...
T Consensus        70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv  133 (326)
T PRK05442         70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA  133 (326)
T ss_pred             Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            33 466899999999998752              123355666677888877777665554433

>PLN02928 oxidoreductase family protein

Probab=97.97  E-value=5.6e-05  Score=77.10  Aligned_cols=126  Identities=13%  Similarity=0.038  Sum_probs=78.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|.+|+.||++........            .+ +................++ +.++.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence            6899999999999999999999999999999732211100            00 0000000000000012244 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCC-Ceeeecccc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFF  286 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~-~r~ig~hf~  286 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++|+...-+  +.-+.|.+.+... -...++--|
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~  289 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA  289 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence            99999999988776555556677788999988754333  4556777777432 223444444

>PRK05869 enoyl-CoA hydratase; Validated

Probab=97.96  E-value=8.8e-06  Score=77.73  Aligned_cols=42  Identities=33%  Similarity=0.646  Sum_probs=40.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~   42 (496)
                      |++||++++|+||+++||||+|+|++++++++.+++++++..
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~  204 (222)
T PRK05869        163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG  204 (222)
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999986

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.95  E-value=2.5e-05  Score=78.64  Aligned_cols=103  Identities=18%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ce
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL  215 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i  215 (496)
                      -||+|||+ |.+|.++|..+...|+       +++|+|+++  +.++.....+.+..         .     ....  .+
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i   69 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA---------F-----PLLAGVVA   69 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcc---------c-----cccCCcEE
Confidence            59999998 9999999999998886       799999965  32333222221110         0     0011  23


Q ss_pred             ecccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      + +.+++++++||+||.+.-              .+..+.+++..++.++.++++++...|...
T Consensus        70 ~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv  132 (323)
T TIGR01759        70 T-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA  132 (323)
T ss_pred             e-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence            2 456899999999998751              123356667778888887677666554333

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.94  E-value=7.3e-05  Score=75.25  Aligned_cols=126  Identities=19%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (496)
                      ++|||||+|.+|+.+|..+..-|.+|+.||+ .+......                          .......+++. ++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence            6899999999999999999999999999999 43322210                          01122344544 78


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhhcCC-CeeeeccccC--c------CCCCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYSK-DRIVGAHFFS--P------AHVMP  293 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~~~~-~r~ig~hf~~--P------~~~~~  293 (496)
                      .||+|+..+|...+.+.-+=++....++++++++ |++   .+.-..|.+.+... -+-.++-.|.  |      .+..+
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~p  275 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLP  275 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCC
Confidence            9999999999988866555566667789999775 554   34556777777532 2333444442  2      23345


Q ss_pred             eEEEEeC
Q 010966          294 LLEIVRT  300 (496)
Q Consensus       294 lveiv~~  300 (496)
                      -|.+.|+
T Consensus       276 nV~~TPH  282 (324)
T COG0111         276 NVILTPH  282 (324)
T ss_pred             CeEECCc
Confidence            5556665

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.94  E-value=6.9e-05  Score=80.75  Aligned_cols=129  Identities=19%  Similarity=0.146  Sum_probs=85.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++... +...           ..|             +... ++ +.++.
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence            68999999999999999999999999999985421 1100           111             1122 34 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhcC-CCeeeecccc--CcC-----CCCCeEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLLE  296 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~~-~~r~ig~hf~--~P~-----~~~~lve  296 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++++..+-  .+.-..+.+.+.. .-.-.++--|  .|+     +..+-|.
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            9999999998877665554667778899998864433  3445677777743 2233444433  232     2345566


Q ss_pred             EEeCCC
Q 010966          297 IVRTNQ  302 (496)
Q Consensus       297 iv~~~~  302 (496)
                      +.|+-.
T Consensus       275 lTPHia  280 (526)
T PRK13581        275 VTPHLG  280 (526)
T ss_pred             EcCccc
Confidence            667643

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.93  E-value=3e-05  Score=77.53  Aligned_cols=97  Identities=21%  Similarity=0.289  Sum_probs=62.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-c-C--
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D--  220 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--  220 (496)
                      +||+|||+ |.+|+++|..++..|+  +++|+|++  .++...-.+.        .+.        ....+... . +  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~--------~~~--------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLS--------HIN--------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhH--------hCC--------CcceEEEecCCCch
Confidence            48999999 9999999999998885  89999998  2221111111        110        01234432 3 2  


Q ss_pred             cccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          221 YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       221 ~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ++++++||+||.+.-              .+..+.+++...+.++. |++++...|.
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtN  118 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISN  118 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence            799999999998751              13345556666777774 5665544333

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.92  E-value=1.3e-05  Score=73.85  Aligned_cols=104  Identities=20%  Similarity=0.195  Sum_probs=71.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++........           ..+             .. ..+++ .++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~~-~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------VE-YVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------EE-ESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------ce-eeehhhhcch
Confidence            6899999999999999999999999999999987543110           011             11 23444 4688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS  276 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~  276 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +.-+.+.+.+..
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~  143 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES  143 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence            99999999977655444445666778999988754433  445677777743

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.90  E-value=2.2e-05  Score=79.14  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=65.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ce
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL  215 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i  215 (496)
                      .||+|||+ |.+|.++|..++..|.       +++|+|++++.  ++.....+.+        .. +     ....  .+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~--------~~-~-----~~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELED--------CA-F-----PLLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhh--------cc-c-----cccCceEE
Confidence            59999999 9999999999998887       79999996532  3321111111        00 0     0111  23


Q ss_pred             ecccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      + +.+++++++||+||.+.-              .+..+.+++..+|.++.+++++++..|
T Consensus        69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            3 456899999999998751              123355666777888876566665444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=97.90  E-value=2.5e-05  Score=73.89  Aligned_cols=93  Identities=13%  Similarity=0.174  Sum_probs=80.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |||.|++++|+||...|||++|++++.+.+.+..-+++++..+ |.                                  
T Consensus       171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~-p~----------------------------------  215 (266)
T KOG0016|consen  171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLS-PE----------------------------------  215 (266)
T ss_pred             HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999988852 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR  129 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr  129 (496)
                       .....|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus       216 -sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  216 -SLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence             123678888887777888899999999999999999999999998754

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.88  E-value=0.00011  Score=75.32  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee-
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-------PVILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-  216 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-  216 (496)
                      -||+|||+ |.+|.++|..++..|+       .++|+  |++.+.++...-.+.+...              ..+..++ 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i  110 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI  110 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence            59999999 9999999999998875       24445  8888877654433332210              1112333 


Q ss_pred             cccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          217 GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       217 ~~~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      .+.+++++++||+||.+.  |.            +..+.+++...|.++.++++++...|.
T Consensus       111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            246789999999999865  11            233555666778887778886655443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00035  Score=68.67  Aligned_cols=153  Identities=15%  Similarity=0.083  Sum_probs=102.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--c
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~  224 (496)
                      ..+|+|||.|.||.-+|..+.++|+.|...||++  -+.+.+++        ..+.               .+++.+  -
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~---------------ft~lhdlce  106 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAK---------------FTLLHDLCE  106 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------cccc---------------cccHHHHHh
Confidence            4689999999999999999999999999999987  22222111        1111               122222  2


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEeccCCcccH--HHHHhhhcCCCeeeeccccCcCC-------CCCe
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH-------VMPL  294 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~~~~--~~la~~~~~~~r~ig~hf~~P~~-------~~~l  294 (496)
                      +..|+|+.|+.-  .-..++++..-.. ++.++|++..+|....  +-+.+-++..-.++..|++..|.       ..|+
T Consensus       107 rhpDvvLlctsi--lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf  184 (480)
T KOG2380|consen  107 RHPDVVLLCTSI--LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF  184 (480)
T ss_pred             cCCCEEEEEehh--hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence            568999999842  1223444544332 5778999988887543  34445566666789999986443       1355


Q ss_pred             EEEE---eCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          295 LEIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       295 veiv---~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      |-+-   ......++..+.+.+++...|...|.+.
T Consensus       185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS  219 (480)
T KOG2380|consen  185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS  219 (480)
T ss_pred             EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence            5432   2234458999999999999998887763

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.86  E-value=3.7e-05  Score=76.99  Aligned_cols=98  Identities=21%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-c-cC--c
Q 010966          149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y  221 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~  221 (496)
                      ||+|||+ |.+|+++|..++..|+  +++|+|+++ ....++ .+        ..+.        ...++.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL--------~~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DL--------SHIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hh--------hcCC--------cCceEEEecCCCchH
Confidence            7999999 9999999999998886  899999987 111111 11        1110        0123443 2 23  7


Q ss_pred             ccccCCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       222 ~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      +++++||+||.+.              ..+..+.+++...+.++. |++++...|...
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv  119 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV  119 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence            8999999999875              224445566667777774 566554433333

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.81  E-value=6.9e-05  Score=68.76  Aligned_cols=95  Identities=25%  Similarity=0.298  Sum_probs=59.6

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-----
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-----  219 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-----  219 (496)
                      ||.|||+|.||+.++..|++.|+ +++++|.+.   +.+.+..-.     .  -.-|....+.....+.++.+..     
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-----~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~   73 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-----L--SQIGEPKVEALKENLREINPFVKIEAI   73 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-----H--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            58999999999999999999999 599999986   333321100     0  0112211222222222221111     


Q ss_pred             -------Cc-ccccCCCEEEEeccCChHHHHHHHHHHHhh
Q 010966          220 -------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKY  251 (496)
Q Consensus       220 -------~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~  251 (496)
                             +. +.++++|+||+| .++.+.|..+.....+.
T Consensus        74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                   11 236889999999 67888888777777665

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.80  E-value=5.8e-05  Score=74.93  Aligned_cols=89  Identities=25%  Similarity=0.279  Sum_probs=60.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..|...|.+|++++++++..+...           +.|. .         .+. ..++ +.+++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence            5899999999999999999999999999999987654321           1121 0         001 1122 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +|+||.++|... +.    ++..+.+++++++...+|
T Consensus       210 aDiVint~P~~i-i~----~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       210 IDIVINTIPALV-LT----ADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CCEEEECCChHH-hC----HHHHhcCCCCeEEEEeCc
Confidence            999999998642 11    233445677777765444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.77  E-value=0.0001  Score=65.98  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +++.|+|.|..|+++|+.|...|.+|+++|++|-.+-++.           -.|             ....+-.+.+..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence            5899999999999999999999999999999996543321           112             2222223568899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc---ccHHHHHhh
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER  273 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---~~~~~la~~  273 (496)
                      |++|-+.-...-+..+-    .+.+++++|+++.++.   +.+..+.+.
T Consensus        80 di~vtaTG~~~vi~~e~----~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEH----FRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SEEEE-SSSSSSB-HHH----HHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CEEEECCCCccccCHHH----HHHhcCCeEEeccCcCceeEeecccccc
Confidence            99998876543233333    3447899999876653   456666554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=97.76  E-value=0.00012  Score=75.24  Aligned_cols=131  Identities=16%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh----hcccCC-C-CCc--------------h
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT----LYKTDK-I-EPL--------------G   60 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~----~~~~~~-~-~~~--------------~   60 (496)
                      |+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |....    .+.... . ++.              .
T Consensus       168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~  245 (381)
T PLN02988        168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR  245 (381)
T ss_pred             HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence            579999999999999999999999999998888887 554431 21111    000000 0 000              0


Q ss_pred             hHHHHHH------------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 010966           61 EAREIFK------------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHI  124 (496)
Q Consensus        61 ~~~~~~~------------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~---s~~a~~~i~a  124 (496)
                      .....+.            ++++....-....| +...+.+.++.+...++.+.+..|...-..++.   ++|+.|++++
T Consensus       246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA  325 (381)
T PLN02988        246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA  325 (381)
T ss_pred             CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence            0001111            11111111111233 456778889988889999999999999999887   6999999998


Q ss_pred             HHh-hcCCCC
Q 010966          125 FFA-QRGTSK  133 (496)
Q Consensus       125 F~~-kr~~~~  133 (496)
                      -+- |.+.++
T Consensus       326 ~LiDKd~~P~  335 (381)
T PLN02988        326 ILVDKDKNPK  335 (381)
T ss_pred             HhcCCCCCCC
Confidence            765 433333

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.75  E-value=9.1e-05  Score=73.96  Aligned_cols=95  Identities=24%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             EEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCE
Q 010966          152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM  229 (496)
Q Consensus       152 VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  229 (496)
                      |||+|.+|..+|..++..++  +++++|++++.++.....+.+...      ...      ....++ ..+++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~------~~~------~~~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS------FLP------TPKKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc------ccC------CCeEEe-cCCHHHHCCCCE
Confidence            69999999999999998887  799999998766554433322110      000      001233 456899999999


Q ss_pred             EEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEec
Q 010966          230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       230 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      ||.+.-.              +..+.+++...+.++. ++++++.
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~viv  111 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLV  111 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence            9987621              3334556666777764 5554443

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=97.72  E-value=0.00012  Score=73.77  Aligned_cols=93  Identities=20%  Similarity=0.332  Sum_probs=60.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccC---
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---  220 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---  220 (496)
                      .||+|||+ |.+|+.+|..++..++  +++++|+++  ++.....+.        ..       .. ...+.. +.+   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~--------~~-------~~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVS--------HI-------NT-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhh--------hC-------Cc-CceEEEEeCCCCH
Confidence            59999999 9999999999998776  899999987  111000110        00       00 012322 223   


Q ss_pred             cccccCCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       221 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++++++||+||.+.              +.+..+.++++..+.++. ++.++.
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivi  132 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVN  132 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence            57899999999875              234446667777788776 445443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.72  E-value=0.00022  Score=70.24  Aligned_cols=70  Identities=24%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      .+||+|||+|.||..++..+...  +++|. ++|+++++.+...+.          .|.            ....+++++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g~------------~~~~~~~ee   63 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LRR------------PPPVVPLDQ   63 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cCC------------CcccCCHHH
Confidence            47999999999999999999863  78875 889998876543211          110            112334433


Q ss_pred             -ccCCCEEEEeccCCh
Q 010966          224 -FKDVDMVIEAIIENV  238 (496)
Q Consensus       224 -~~~aDlVIeav~e~~  238 (496)
                       +.++|+|++|.|.+.
T Consensus        64 ll~~~D~Vvi~tp~~~   79 (271)
T PRK13302         64 LATHADIVVEAAPASV   79 (271)
T ss_pred             HhcCCCEEEECCCcHH
Confidence             577999999999764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=6.1e-05  Score=74.41  Aligned_cols=71  Identities=14%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|+|||.| .||.+||..|.++|++|++|++....++                                     +.+++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~  202 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ  202 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence            689999996 9999999999999999999986543211                                     22568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ||+||.|++....++..+       ++++++++..+
T Consensus       203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg  231 (301)
T PRK14194        203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG  231 (301)
T ss_pred             CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence            999999998664443332       68899887643

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.70  E-value=0.00018  Score=68.60  Aligned_cols=107  Identities=25%  Similarity=0.422  Sum_probs=71.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ...||.|+|.|..|.++|..++.+|.  ++.++|.+++.++...-.+        +.|.     .--...++....||..
T Consensus        19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s-----~f~~~~~V~~~~Dy~~   85 (332)
T KOG1495|consen   19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGS-----AFLSTPNVVASKDYSV   85 (332)
T ss_pred             cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------cccc-----ccccCCceEecCcccc
Confidence            36799999999999999999999997  8999999999876533222        1111     0011246777788999


Q ss_pred             ccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      .+++++||...-.              +.++.+.++.++-++ .|++++...+....
T Consensus        86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD  141 (332)
T KOG1495|consen   86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD  141 (332)
T ss_pred             cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence            9999999987621              223444444555555 56665543333333

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.67  E-value=0.00058  Score=68.97  Aligned_cols=102  Identities=15%  Similarity=0.112  Sum_probs=72.4

Q ss_pred             eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      ++|+|||.|.+|..+|..+. .-|.+|..+|+........            ..+             +.. .+++ .++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence            68999999999999999987 6799999999864211100            001             111 2443 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      .||+|+.++|-..+.+.-+=++..+.++++++++..+  +.+.-+.+.+.+.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ  251 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999999888766655566777889999887432  3345567877775

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.66  E-value=0.00028  Score=70.88  Aligned_cols=109  Identities=17%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|+.+|..+..-|.+|+.||+.....+               .+             +. ..+++ .++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence            6899999999999999999888999999998632100               00             11 12443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhcC-CCeeeecccc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYS-KDRIVGAHFF  286 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~~-~~r~ig~hf~  286 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++|+..+  +.+.-+.+.+.+.. .-. .++--|
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~  258 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL  258 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence            999999999887766555566777889999887443  23455678777753 233 555555

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.65  E-value=0.00034  Score=68.67  Aligned_cols=88  Identities=23%  Similarity=0.302  Sum_probs=56.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      |+||+|||+|.||..++..+.+.  +++ +.++|++++..+...+.          .+             ....+++++
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~e   57 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDE   57 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHH
Confidence            36899999999999999998876  455 66899999876653210          01             112345544


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                       +.++|+|++|++.+.  -.++..++.+. ..+.++.|
T Consensus        58 ll~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~s   92 (265)
T PRK13304         58 LVEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIMS   92 (265)
T ss_pred             HhcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEEc
Confidence             478999999997543  23444444332 34554443

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.0019  Score=63.94  Aligned_cols=196  Identities=17%  Similarity=0.196  Sum_probs=122.7

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  223 (496)
                      +...|++||+++||..++.+.+.+|+.|..|+|+.++.+..+.+-.        +|           ..|....++++  
T Consensus         5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v   65 (487)
T KOG2653|consen    5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFV   65 (487)
T ss_pred             cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHH
Confidence            4568999999999999999999999999999999999888654321        11           12333444443  


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec--cCCcccHH-HHHhhhcCCCeeeeccccC---cCCCCCeE
Q 010966          224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS--NTSTIDLN-LIGERTYSKDRIVGAHFFS---PAHVMPLL  295 (496)
Q Consensus       224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s--ntS~~~~~-~la~~~~~~~r~ig~hf~~---P~~~~~lv  295 (496)
                        ++.--.||..|..... ...++++|.+++.++.||+.  |++.-..+ ...+.....--|+|.----   .++.+|  
T Consensus        66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--  142 (487)
T KOG2653|consen   66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--  142 (487)
T ss_pred             HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence              4666777777754332 35678899999988777764  44333333 2222222333466654321   111222  


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCc-------eEEecC-cccchh----hchH---HHHHHHHHHHHHc--CCCHHHHH
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGFAV----NRMF---FPYTQAAFLLVER--GTDLYLID  358 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G~i~----nril---~~~~~ea~~l~~~--g~~~~~ID  358 (496)
                      .++||  .+++....+++++..+-..       ..++++ +.|.++    |-|=   +.++.||..++..  |.+-++|-
T Consensus       143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia  220 (487)
T KOG2653|consen  143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA  220 (487)
T ss_pred             ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence            14444  5888888888888765322       234454 345433    4443   2467899998865  55888888


Q ss_pred             HHHHhcC
Q 010966          359 RAITKFG  365 (496)
Q Consensus       359 ~a~~~~g  365 (496)
                      .++..++
T Consensus       221 ~vF~~WN  227 (487)
T KOG2653|consen  221 EVFDDWN  227 (487)
T ss_pred             HHHHhhc
Confidence            8776443

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.64  E-value=0.00018  Score=72.32  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             ccceEEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCC
Q 010966          145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN  179 (496)
Q Consensus       145 ~~~~kV~VIGa-G~mG~~iA~~la~~G--~~V~l~d~~  179 (496)
                      ..|+||+|||+ |.+|+.+|..++..+  .+++++|++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~   43 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV   43 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence            45789999999 999999999998666  489999993

>cd00704 MDH Malate dehydrogenase

Probab=97.64  E-value=5.7e-05  Score=76.17  Aligned_cols=98  Identities=21%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhc--ce
Q 010966          149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LL  215 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i  215 (496)
                      ||+|||+ |.+|+.+|..++..|+       +++|+|+++  +.++.....+.+               .. ....  .+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d---------------~~~~~~~~~~i   66 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQD---------------CAFPLLKGVVI   66 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhh---------------hcccccCCcEE
Confidence            8999999 9999999999998764       499999987  533321111110               10 0111  12


Q ss_pred             ecccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          216 TGVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       216 ~~~~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      + ..+++++++||+||.+.  |            .+..+.+++..++.++++++.+++..|
T Consensus        67 ~-~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          67 T-TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             e-cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            2 45678999999999765  1            133456667777888865666555444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=97.62  E-value=6.7e-05  Score=72.51  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhcc
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH   42 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~   42 (496)
                      |++||++++|+||+++||||+|+|+ +++++.+.++|++++..
T Consensus       160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~  202 (239)
T PLN02267        160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR  202 (239)
T ss_pred             HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999985 68999999999999986

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.62  E-value=0.00043  Score=72.23  Aligned_cols=100  Identities=21%  Similarity=0.259  Sum_probs=72.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|+.+|..+..-|.+|+.||+++...                .+            ......+++ .++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence            689999999999999999999999999999864210                00            011223454 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++|+..+  +.+.-..+.+.+.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            999999999887766555466777789999886433  2345567777774

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.60  E-value=0.00015  Score=63.69  Aligned_cols=74  Identities=22%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      -++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+         .+.        . -.....+++ +.+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---------~~~--------~-~~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---------GGV--------N-IEAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---------TGC--------S-EEEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---------Ccc--------c-cceeeHHHHHHHH
Confidence            36999999999999999999999986 999999999877654321         000        0 011112233 346


Q ss_pred             cCCCEEEEeccCCh
Q 010966          225 KDVDMVIEAIIENV  238 (496)
Q Consensus       225 ~~aDlVIeav~e~~  238 (496)
                      .++|+||.|+|-..
T Consensus        74 ~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QEADIVINATPSGM   87 (135)
T ss_dssp             HTESEEEE-SSTTS
T ss_pred             hhCCeEEEecCCCC
Confidence            78999999987653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.60  E-value=0.00017  Score=72.81  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcceec
Q 010966          149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG  217 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~  217 (496)
                      ||+|||+ |.+|+.+|..++..|+       +++|+|++++.  ++.....+.               +.. .....+..
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~---------------d~~~~~~~~~~~   65 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM---------------DCAFPLLDGVVP   65 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehh---------------cccchhcCceec
Confidence            6899999 9999999999998664       59999996542  221111110               111 11123333


Q ss_pred             c-cCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          218 V-LDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       218 ~-~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      + .+++++++||+||.+.  |            .+..+.+++..++.++.++++++...|.
T Consensus        66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            3 3488999999999865  1            1222455666678887656676655443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.56  E-value=0.00018  Score=68.19  Aligned_cols=104  Identities=27%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcce----ec--
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL----TG--  217 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i----~~--  217 (496)
                      .+|.|||+|.+|+.+|..|++.|. +++++|.+   .+.+.+..     .+..  .-|.-..+.....+.++    ..  
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-----~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~  101 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ-----YFIS--QIGMPKVEALKENLLEINPFVEIEA  101 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE-----eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence            489999999999999999999998 59999998   33222110     0000  01111111111111111    11  


Q ss_pred             -----c-cCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          218 -----V-LDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       218 -----~-~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                           + .+. +.++++|+||+|+ ++.+.+..+.....+......|.+
T Consensus       102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~  149 (212)
T PRK08644        102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA  149 (212)
T ss_pred             EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence                 0 111 2367899999995 677777777766665533333443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.54  E-value=0.00032  Score=69.98  Aligned_cols=89  Identities=19%  Similarity=0.244  Sum_probs=60.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||.|||+|.+|..++..+...|.+|+++|++++..+...           ..|. +          .....++ +.+.+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~----------~~~~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S----------PFHLSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e----------eecHHHHHHHhCC
Confidence            5899999999999999999999999999999987654321           1121 0          0001122 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +|+||.++|...     +-++..+.++++.+++...+
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence            999999998432     22344455677777765443

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.53  E-value=0.005  Score=61.09  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcccccCCCEEEEeccC
Q 010966          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE  236 (496)
Q Consensus       158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e  236 (496)
                      ||+.+|..|+++|++|++++++ +..+...           +.|. +...........+..+++.+.+..+|+||.|++.
T Consensus         2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs   69 (293)
T TIGR00745         2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA   69 (293)
T ss_pred             chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence            7999999999999999999997 4443321           1221 1000000000022334445557789999999975


Q ss_pred             ChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeeeec-ccc-----CcCCC----CCeEEEEeCCCCCH
Q 010966          237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGA-HFF-----SPAHV----MPLLEIVRTNQTSP  305 (496)
Q Consensus       237 ~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~ig~-hf~-----~P~~~----~~lveiv~~~~t~~  305 (496)
                      . + -.++++.+.+++.++++|++...++.. +.+...++. .++++. -++     .|-..    ...+.+-..+... 
T Consensus        70 ~-~-~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~-  145 (293)
T TIGR00745        70 Y-Q-TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN-  145 (293)
T ss_pred             h-h-HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch-
Confidence            4 2 356788899999888888877777754 445554432 344332 221     22211    0112222222222 


Q ss_pred             HHHHHHHHHHHHcCCceEEecC
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      +..+.+.+.+...|.......|
T Consensus       146 ~~~~~l~~~l~~~~~~~~~~~d  167 (293)
T TIGR00745       146 EAVEALAELLNEAGIPAELHGD  167 (293)
T ss_pred             HHHHHHHHHHHhCCCCCEecch
Confidence            5566777788887766655555

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.51  E-value=0.00011  Score=75.57  Aligned_cols=99  Identities=13%  Similarity=0.209  Sum_probs=67.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-ccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|++||+.....+                +.            . ...++++ +++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~-~~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------G-DFVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------c-cccCHHHHHhh
Confidence            5899999999999999999999999999998543110                00            0 0123443 689


Q ss_pred             CCEEEEeccCChH---HHHHHH-HHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+   -...++ ++..+.++++++++..+-+  +.-..+.+.+.
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~  222 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL  222 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            9999999996542   122333 4456668999988744333  34456766663

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.49  E-value=0.0012  Score=69.09  Aligned_cols=75  Identities=23%  Similarity=0.344  Sum_probs=50.4

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +||+|||+|.- ...+...++..     +-+|+++|+++++++...    ....+..+.....        -++..|+|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence            48999999874 45566666643     458999999999887632    2222233321111        246677886


Q ss_pred             -ccccCCCEEEEec
Q 010966          222 -ESFKDVDMVIEAI  234 (496)
Q Consensus       222 -~~~~~aDlVIeav  234 (496)
                       +++++||+||.++
T Consensus        69 ~~Al~gADfVi~~i   82 (425)
T cd05197          69 EDAIIDADFVINQF   82 (425)
T ss_pred             HHHhCCCCEEEEee
Confidence             5799999999875

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.48  E-value=0.00088  Score=67.43  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|+.+|..+..-|.+|+.||+....  ..            ..+                ..+++ .++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence            68999999999999999998889999999975321  00            000                12343 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+-  .+.-+.+.+.+.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE  248 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999998877655555667777899998874432  345567877775

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.48  E-value=0.00079  Score=67.88  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|+.+|..+..-|.+|+.||+..... .                 .         .    ..+++ .++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~---------~----~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P---------D----RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c---------c----ccCHHHHHHh
Confidence            689999999999999999998899999999863210 0                 0         0    11343 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++|+..+-  .+.-+.+.+.+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR  248 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999998887666555667778899998874432  345567777774

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.47  E-value=0.00037  Score=70.20  Aligned_cols=93  Identities=18%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      -++|+|||+|.||..++..+..  ...+|++|++++++.+...+++..       .|.           .+....+. +.
T Consensus       125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a  186 (314)
T PRK06141        125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA  186 (314)
T ss_pred             CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence            3589999999999999985554  346899999999988776543221       110           12233444 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +.+||+||.|.+....    ++..  +.+++++.|...++
T Consensus       187 v~~aDIVi~aT~s~~p----vl~~--~~l~~g~~i~~ig~  220 (314)
T PRK06141        187 VRQADIISCATLSTEP----LVRG--EWLKPGTHLDLVGN  220 (314)
T ss_pred             HhcCCEEEEeeCCCCC----EecH--HHcCCCCEEEeeCC
Confidence            7899999988875522    2221  34677776654443

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.45  E-value=0.0015  Score=68.43  Aligned_cols=75  Identities=24%  Similarity=0.298  Sum_probs=50.5

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +||+|||+|.. +..+...++..     +-+|+++|+++++++...    ....+..+.....        -++..|+|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence            59999999875 44555566543     358999999999887632    2222333321111        256777886


Q ss_pred             -ccccCCCEEEEec
Q 010966          222 -ESFKDVDMVIEAI  234 (496)
Q Consensus       222 -~~~~~aDlVIeav  234 (496)
                       +++++||+||.++
T Consensus        69 ~eAl~gADfVi~~i   82 (437)
T cd05298          69 EEAFTDADFVFAQI   82 (437)
T ss_pred             HHHhCCCCEEEEEe
Confidence             6799999999876

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.42  E-value=0.0017  Score=59.74  Aligned_cols=74  Identities=23%  Similarity=0.296  Sum_probs=46.7

Q ss_pred             EEEEEeCChhhHHHH--HHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966          149 KVAILGGGLMGSGIA--TALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (496)
Q Consensus       149 kV~VIGaG~mG~~iA--~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (496)
                      ||+|||+|..-.+.-  ..+...    +-+++++|+|+++++....-.+..    ++.-..        --++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~--------~~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGA--------DLKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTT--------SSEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCC--------CeEEEEeCCHH
Confidence            799999998866533  233332    348999999999988654333222    222111        1246678887 


Q ss_pred             ccccCCCEEEEec
Q 010966          222 ESFKDVDMVIEAI  234 (496)
Q Consensus       222 ~~~~~aDlVIeav  234 (496)
                      +++++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            5699999999876

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.41  E-value=0.00052  Score=70.91  Aligned_cols=184  Identities=14%  Similarity=0.112  Sum_probs=106.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      ++|+|||.|.+|..-|..+...|++|+      .+|.+.+.-+.+.           +.|.             ...+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence            689999999999999999999999999      4444433333221           2221             122223


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC----------C
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V  291 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~----------~  291 (496)
                      +.++.||+|+..+|+. . ...++.++.+++++++.+.- +-+..+..-.-..+....++-+-|-.|-+          .
T Consensus        93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G  169 (487)
T PRK05225         93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG  169 (487)
T ss_pred             HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence            5689999999999977 3 77888999999999998753 22333322111111112233333333322          1


Q ss_pred             CCeEEEEe-CCCCCHHHHHHHHHHHHHcCCce--EE-ec---C-cccchhh-chHHHHH---HHH--HHHHHcCCCHHHH
Q 010966          292 MPLLEIVR-TNQTSPQVIVDLLDIGKKIKKTP--IV-VG---N-CTGFAVN-RMFFPYT---QAA--FLLVERGTDLYLI  357 (496)
Q Consensus       292 ~~lveiv~-~~~t~~e~~~~~~~l~~~lGk~~--v~-v~---d-~~G~i~n-ril~~~~---~ea--~~l~~~g~~~~~I  357 (496)
                      .|...-|. -...+-...+.+..+...+|...  +. ..   + ....+.. -+|+..+   .++  -.++++|.+|+.-
T Consensus       170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A  249 (487)
T PRK05225        170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA  249 (487)
T ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            23333332 23455667888999999998652  22 11   1 1112222 2233222   222  2567889888765


Q ss_pred             H
Q 010966          358 D  358 (496)
Q Consensus       358 D  358 (496)
                      -
T Consensus       250 ~  250 (487)
T PRK05225        250 E  250 (487)
T ss_pred             H
Confidence            4

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.0017  Score=62.19  Aligned_cols=93  Identities=23%  Similarity=0.289  Sum_probs=62.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccC---cc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---YE-  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~-  222 (496)
                      |+|.|||+|.+|.++|..|.+.|++|+++|.+++.++......         .+.          .-+.. .++   ++ 
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~---------~~~----------~~v~gd~t~~~~L~~   61 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE---------LDT----------HVVIGDATDEDVLEE   61 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh---------cce----------EEEEecCCCHHHHHh
Confidence            5899999999999999999999999999999999877633200         000          00111 112   22 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEecc
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASN  261 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sn  261 (496)
                       .+.++|.+|-++.+|.  ...++..+... +....+++-.
T Consensus        62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEe
Confidence             3689999999998764  34555555533 4555566543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.40  E-value=0.00035  Score=69.21  Aligned_cols=70  Identities=17%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ++|+||| .|.||.+||..|.++|++|++|+ ++++ ++                                     +.++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~  200 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR  200 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence            6899999 99999999999999999999995 6542 11                                     1246


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      .||+||.|++....+...       .++++++++..+
T Consensus       201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvG  230 (296)
T PRK14188        201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVG  230 (296)
T ss_pred             cCCEEEEecCChhhcchh-------eecCCCEEEEcC
Confidence            799999999865433322       268899887643

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.39  E-value=0.0017  Score=60.91  Aligned_cols=39  Identities=28%  Similarity=0.425  Sum_probs=35.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++|+|+|.|.||..+|+.|...|++|+++|++++.++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999998876654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.39  E-value=0.0011  Score=69.11  Aligned_cols=75  Identities=25%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             eEEEEEeCChhhH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       148 ~kV~VIGaG~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      +||+|||+|..-+ .+...++..     +-+|+++|++ +++++....-++    +..+....+        -++..|+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~----~~~~~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK----RMVKKAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCC
Confidence            5899999998633 455565552     3589999999 787765332222    222221110        14666777


Q ss_pred             c-ccccCCCEEEEec
Q 010966          221 Y-ESFKDVDMVIEAI  234 (496)
Q Consensus       221 ~-~~~~~aDlVIeav  234 (496)
                      . +++++||+||.++
T Consensus        69 ~~~al~gadfVi~~~   83 (419)
T cd05296          69 RREALEGADFVFTQI   83 (419)
T ss_pred             HHHHhCCCCEEEEEE
Confidence            6 5689999999876

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.38  E-value=0.00084  Score=69.66  Aligned_cols=85  Identities=20%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+.           ..|. .            .....+.++++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-~------------~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-E------------VMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-E------------EccHHHHHcCC
Confidence            5899999999999999999999999999999998776543           1231 0            01111346789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEecc
Q 010966          228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASN  261 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sn  261 (496)
                      |+||+|....     .++. .....++++.+++..
T Consensus       259 DVVI~atG~~-----~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEe
Confidence            9999997533     2333 335567888877643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.35  E-value=0.00046  Score=69.43  Aligned_cols=72  Identities=22%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      -++|+|||+|.||..++..+...| .+|+++|+++++.....+.+          |.           .....+++ +.+
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l  236 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELL  236 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHH
Confidence            368999999999999999998866 68999999998765533211          11           01111122 346


Q ss_pred             cCCCEEEEeccCChH
Q 010966          225 KDVDMVIEAIIENVS  239 (496)
Q Consensus       225 ~~aDlVIeav~e~~~  239 (496)
                      .++|+||.|++....
T Consensus       237 ~~aDvVi~at~~~~~  251 (311)
T cd05213         237 NEADVVISATGAPHY  251 (311)
T ss_pred             hcCCEEEECCCCCch
Confidence            789999999986543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.33  E-value=0.00023  Score=73.06  Aligned_cols=99  Identities=14%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-ccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (496)
                      ++|+|||.|.||+.+|..+..-|++|.+||+....  .               +.           .. ...++++ ++.
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~-~~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EG-DFRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------cc-ccCCHHHHHhh
Confidence            58999999999999999999999999999964321  0               00           00 0224544 689


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~  275 (496)
                      ||+|+..+|-..+    ...-+=++..+.++++++++..+=  .+.-+.+.+.+.
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~  222 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN  222 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence            9999999985542    222222455567899998874332  344566766663

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.32  E-value=0.0012  Score=68.42  Aligned_cols=98  Identities=23%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+.           ..|.             ...+..+.++++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a  251 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG  251 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence            5899999999999999999999999999999997643321           1221             011112346789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCC---cccHHHHHhhh
Q 010966          228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS---TIDLNLIGERT  274 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS---~~~~~~la~~~  274 (496)
                      |+||++....     .++. +....++++++++..+.   .+....+.+..
T Consensus       252 DVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       252 DIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence            9999987532     3333 35566789988875433   24556665543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.32  E-value=0.00032  Score=71.74  Aligned_cols=80  Identities=24%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      |++|.|||+|.+|+.+|..|+++| .+|++.|++.+++++......         +++...+++     +.-...+ +.+
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD-----~~d~~al~~li   66 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVD-----AADVDALVALI   66 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEec-----ccChHHHHHHH
Confidence            579999999999999999999999 899999999999887643211         111111000     0000111 346


Q ss_pred             cCCCEEEEeccCChHH
Q 010966          225 KDVDMVIEAIIENVSL  240 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~  240 (496)
                      ++.|+||.|+|.....
T Consensus        67 ~~~d~VIn~~p~~~~~   82 (389)
T COG1748          67 KDFDLVINAAPPFVDL   82 (389)
T ss_pred             hcCCEEEEeCCchhhH
Confidence            8889999999876543

>PLN02306 hydroxypyruvate reductase

Probab=97.32  E-value=0.0022  Score=66.26  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=73.8

Q ss_pred             eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      ++|+|||.|.+|+.+|..+. .-|.+|+.||+.... .+.........   ....+..        ........++++ +
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~---l~~~~~~--------~~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF---LKANGEQ--------PVTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccc---ccccccc--------cccccccCCHHHHH
Confidence            68999999999999999985 669999999987532 11100000000   0000000        001112235544 6


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      +.||+|+.++|-..+.+.-+=++..+.++++++|+..+  +.+.-..+.+.+.
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~  287 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK  287 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            89999999999887766655567777889999887433  2345567777764

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.29  E-value=0.00055  Score=68.89  Aligned_cols=102  Identities=21%  Similarity=0.117  Sum_probs=74.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++++|||.|.+|..+|+.+..-|.+|..||+++. -+. .+           .+            .....+-.+.++.|
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~~-----------~~------------~~~y~~l~ell~~s  201 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-EK-----------EL------------GARYVDLDELLAES  201 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-Hh-----------hc------------CceeccHHHHHHhC
Confidence            6999999999999999999977899999999874 111 00           00            01122212457999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhhc
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY  275 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~~  275 (496)
                      |+|+..+|-..+-..-+=++..+.++++++|+ ||+   .+.-..+.+.+.
T Consensus       202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK  251 (324)
T ss_pred             CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            99999999888876666677778889999886 554   345566777764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.26  E-value=0.00095  Score=69.44  Aligned_cols=87  Identities=22%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             ...+-.+.++++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v~~l~eal~~a  268 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RVMTMEEAAELG  268 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------EecCHHHHHhCC
Confidence            5799999999999999999999999999999987654321           1121             011111346789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCC
Q 010966          228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS  263 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS  263 (496)
                      |+||++....     .++. +....++++++++...+
T Consensus       269 DVVI~aTG~~-----~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        269 DIFVTATGNK-----DVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcCCCCCEEEEcCC
Confidence            9999987422     2343 45566789988865443

>PRK05086 malate dehydrogenase; Provisional

Probab=97.26  E-value=0.0011  Score=66.63  Aligned_cols=94  Identities=21%  Similarity=0.349  Sum_probs=57.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec--ccC-
Q 010966          148 KKVAILGG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD-  220 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-  220 (496)
                      |||+|||+ |.+|..++..+..   .+++++++|+++..  .+.     .++  +...        .....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~-----alD--l~~~--------~~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGV-----AVD--LSHI--------PTAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cce-----ehh--hhcC--------CCCceEEEeCCCCH
Confidence            59999999 9999999998854   24689999998542  110     000  0000        00112332  345 


Q ss_pred             cccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++++++||+||.|.-.              +..+.+++...+.++. ++.+++
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi  115 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG  115 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            5789999999998732              1224455666677774 555554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.25  E-value=0.00088  Score=66.46  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=52.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|.|||+|-+|++++..|+..|. +|+++|++.++++...+.+...+      +.          ..+....++ +.+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            589999999999999999999998 79999999988776544332110      00          011112222 3467


Q ss_pred             CCCEEEEeccCC
Q 010966          226 DVDMVIEAIIEN  237 (496)
Q Consensus       226 ~aDlVIeav~e~  237 (496)
                      ++|+||.|+|-.
T Consensus       192 ~aDiVInaTp~G  203 (284)
T PRK12549        192 AADGLVHATPTG  203 (284)
T ss_pred             CCCEEEECCcCC
Confidence            899999998754

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=97.24  E-value=0.00022  Score=76.50  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=40.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR   43 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~   43 (496)
                      |+|||++|+|+||++|||||+|||++++++++.++|++++..+
T Consensus       188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~  230 (546)
T TIGR03222       188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS  230 (546)
T ss_pred             HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999999999999873

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.23  E-value=0.0016  Score=67.49  Aligned_cols=131  Identities=16%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh----hcccC-----------------CCC--
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT----LYKTD-----------------KIE--   57 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~----~~~~~-----------------~~~--   57 (496)
                      |+|||++++|++|+++||+|+++|++++ +++.+++.++...+ +....    .+...                 -+.  
T Consensus       201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~  278 (407)
T PLN02851        201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD  278 (407)
T ss_pred             HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence            5799999999999999999999999887 55666655543321 10000    00000                 010  


Q ss_pred             CchhHHHHHH---------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 010966           58 PLGEAREIFK---------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVHI  124 (496)
Q Consensus        58 ~~~~~~~~~~---------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~---~s~~a~~~i~a  124 (496)
                      +....-..+.         ++++.++.-....| +...+.+.++.+..+++++.|..|...-..++   .++|+.|++++
T Consensus       279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA  358 (407)
T PLN02851        279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRA  358 (407)
T ss_pred             CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            0000000000         11111111112233 55677888888888999999999999988887   48999999998


Q ss_pred             HHh-hcCCCC
Q 010966          125 FFA-QRGTSK  133 (496)
Q Consensus       125 F~~-kr~~~~  133 (496)
                      -+- |.+.++
T Consensus       359 ~LIDKd~~P~  368 (407)
T PLN02851        359 RLVDKDFAPK  368 (407)
T ss_pred             HhcCCCCCCC
Confidence            765 443333

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0045  Score=61.36  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=85.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (496)
                      -||++||+|.||++|+...++ .|++|+ +-|++.+.+.++..+.-.--...++....+.-..+-..+.+..|+|.+.+ 
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~   97 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII   97 (438)
T ss_pred             eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence            499999999999999987765 698755 55888887766654321000000111001111111122455566665543 


Q ss_pred             --cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC-cccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCC
Q 010966          225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN  301 (496)
Q Consensus       225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS-~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~  301 (496)
                        ...|+||++.--..---+-.+..+   .....++.-|.. -..+.-+.....   +-.|+            ....+.
T Consensus        98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gv------------iyS~~~  159 (438)
T COG4091          98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQA---DAAGV------------IYSGGA  159 (438)
T ss_pred             cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHH---hhcCe------------EEeccC
Confidence              456889998632111112223333   334455554532 222222211111   11122            222334


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ...|...-.+.+|.+++|..++.++.
T Consensus       160 GDeP~~~mEL~efa~a~G~evv~aGK  185 (438)
T COG4091         160 GDEPSSCMELYEFASALGFEVVSAGK  185 (438)
T ss_pred             CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence            45677777889999999999999864

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.20  E-value=0.00075  Score=68.25  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=63.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccee
Q 010966          148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT  216 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G-------~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~  216 (496)
                      .||+|+|+ |.+|+.++..|+..+       .+|+++|+++.  .++...               +.-.+.. ....++.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~---------------~Dl~d~~~~~~~~~~   67 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV---------------MELQDCAFPLLKSVV   67 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee---------------eehhhccccccCCce
Confidence            48999999 999999999998855       48999999763  122100               0000000 1112333


Q ss_pred             cccC-cccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          217 GVLD-YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       217 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ...+ ++++++||+||.+.--              +..+.+++...+.++++++++++..|.
T Consensus        68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            3455 4889999999987511              122335666778888766776654443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.19  E-value=0.0014  Score=66.38  Aligned_cols=94  Identities=12%  Similarity=0.036  Sum_probs=62.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      .++++|||+|.||...+..+..  ...+|.+||+++++.+...+++.       +.|.           .+...++. +.
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea  189 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA  189 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence            3689999999999997666543  35689999999999877554332       1110           12334444 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +++||+||.|+|....+    +.  .+.+++++.|.+..|.
T Consensus       190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGAD  224 (325)
T ss_pred             hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence            89999999999865332    21  2345788877655543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.11  E-value=0.0022  Score=55.36  Aligned_cols=103  Identities=20%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGG-GLMGSGIATALIL-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      +||+|+|+ |.||+.|+..+.. .|++ |..+|++++....  +.+..      -.|.-        ...+..+++++. 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~------~~~~~--------~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGE------LAGIG--------PLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHH------HCTSS--------T-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhh------hhCcC--------CcccccchhHHHh
Confidence            58999999 9999999999988 6888 5666777621110  00000      00000        012334456654 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHH
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la  271 (496)
                      +..+|+||+..  .++.-...++..   +..+..+++-|++++-+++.
T Consensus        65 ~~~~DVvIDfT--~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~  107 (124)
T PF01113_consen   65 LEEADVVIDFT--NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQID  107 (124)
T ss_dssp             TTH-SEEEEES---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHH
T ss_pred             cccCCEEEEcC--ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHH
Confidence            56799999987  343333344443   33477777788888765443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.09  E-value=0.0014  Score=64.49  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=36.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|+|+|.||.+++..|+..|++|+++++++++++...+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            58999999999999999999999999999999887765443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=97.08  E-value=0.00037  Score=75.05  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR   43 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~   43 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+
T Consensus       192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~  234 (550)
T PRK08184        192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS  234 (550)
T ss_pred             HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999999999874

>PRK04148 hypothetical protein; Provisional

Probab=97.08  E-value=0.0039  Score=54.22  Aligned_cols=94  Identities=24%  Similarity=0.263  Sum_probs=64.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|.+||+| -|..+|..|++.|++|+.+|+++++.+.+.+.           + ..     ...+.+ +..+.+--+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence            589999999 89999999999999999999999987765421           1 00     000111 12234446899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      |+|...-|. +++ +.-+-+|.+.+..+.+|..-+
T Consensus        79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCC
Confidence            999988764 333 344556777777777775433

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.05  E-value=0.0019  Score=64.75  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=62.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.||...+..+.. .+. +|.+|++++++++...+++..       .+ +          .+. ..+. +.+
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av  186 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP  186 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence            589999999999999999865 564 799999999988776544321       11 0          111 2333 467


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      .++|+||.|.|....+    +..   .++|++.|....|.
T Consensus       187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence            8999999999866433    322   25778766655443

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.04  E-value=0.0011  Score=65.14  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=53.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|+|||. |.||.++|..|.++|+.|++|.-...                                      ++ +.++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            68999999 99999999999999999999832111                                      22 2357


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      +||+||.|++....++..       .++++++++..+
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg  230 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG  230 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence            899999999865444432       378899887643

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.02  E-value=0.0024  Score=64.65  Aligned_cols=93  Identities=13%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.+|...+..++. .++ +|.+||+++++.++..+++...+      +           -.+....++ +.+
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~  190 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI  190 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            589999999999998877653 454 89999999998877654432111      1           012233444 357


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      .++|+||.|.|...    .++.   ..+++++.|.+..|.
T Consensus       191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~  223 (325)
T PRK08618        191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF  223 (325)
T ss_pred             hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence            89999999998653    2333   356788877665553

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.01  E-value=0.0026  Score=57.87  Aligned_cols=76  Identities=25%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||+|.| |..+|..|...|.+|++.+++.+.+.                                     +.+.+
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~   87 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ   87 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence            58999999997 88899999999999999998853322                                     23568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      +|+||-|++..--+..+       .++++.++++.+..-.+
T Consensus        88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv  121 (168)
T cd01080          88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence            99999999764323322       24556777665544433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.00  E-value=0.0054  Score=57.78  Aligned_cols=131  Identities=15%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||+|.+|..-+..|...|.+|++++.+.. .+..           ..+.|.+.         .+...-..+++.+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~   69 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG   69 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence            5899999999999999999999999999987653 1111           12223221         0111112345789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS  304 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~  304 (496)
                      +|+||-|. ++.++...++....+   .+ +++.+.+            .|+   -..|+.|.  ...+++--+.+.+.+
T Consensus        70 ~~lVi~at-~d~~ln~~i~~~a~~---~~-ilvn~~d------------~~e---~~~f~~pa~~~~g~l~iaisT~G~s  129 (205)
T TIGR01470        70 AFLVIAAT-DDEELNRRVAHAARA---RG-VPVNVVD------------DPE---LCSFIFPSIVDRSPVVVAISSGGAA  129 (205)
T ss_pred             cEEEEECC-CCHHHHHHHHHHHHH---cC-CEEEECC------------Ccc---cCeEEEeeEEEcCCEEEEEECCCCC
Confidence            99999885 555666666555432   23 3332221            111   12355663  345666666777778


Q ss_pred             HHHHHHHHHHHHHc
Q 010966          305 PQVIVDLLDIGKKI  318 (496)
Q Consensus       305 ~e~~~~~~~l~~~l  318 (496)
                      |.....+.+-++.+
T Consensus       130 P~la~~lr~~ie~~  143 (205)
T TIGR01470       130 PVLARLLRERIETL  143 (205)
T ss_pred             cHHHHHHHHHHHHh
Confidence            87777777666553

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.96  E-value=0.0019  Score=67.64  Aligned_cols=88  Identities=22%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.+|.++|..+...|.+|+++|+++.....+.           ..|.             . ..++ +.++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence            5899999999999999999999999999999987543321           1121             0 1123 34688


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhCCCCeeEeccCCccc
Q 010966          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~~~  266 (496)
                      +|+||.+.. .    +.++ .+..+.++++++|+. ++...
T Consensus       310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLIN-vGr~d  344 (476)
T PTZ00075        310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVGN-IGHFD  344 (476)
T ss_pred             CCEEEECCC-c----ccccCHHHHhccCCCcEEEE-cCCCc
Confidence            999999863 2    2344 355556789998864 44433

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.96  E-value=0.011  Score=57.88  Aligned_cols=145  Identities=20%  Similarity=0.197  Sum_probs=88.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|||.|.-|.+=|.+|..+|.+|++--+.....          +++..+.|             +...+-.++++.+
T Consensus        19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----------~~kA~~dG-------------f~V~~v~ea~k~A   75 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----------WKKAKEDG-------------FKVYTVEEAAKRA   75 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----------HHHHHhcC-------------CEeecHHHHhhcC
Confidence            699999999999999999999999988866654331          11122333             2222223668999


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCCcccHHHHHhhhcCCC--eeeeccccCcCC----------CCCe
Q 010966          228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMPL  294 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~~~~~~la~~~~~~~--r~ig~hf~~P~~----------~~~l  294 (496)
                      |+|+..+|+.  +-.++++ +|.+.++++..+.- +.++.+..-  .+..|.  .++=+-|-.|-+          ..|.
T Consensus        76 Dvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~  150 (338)
T COG0059          76 DVVMILLPDE--QQKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA  150 (338)
T ss_pred             CEEEEeCchh--hHHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence            9999999965  3567887 89999999886642 223332210  011111  111111222221          1233


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCc
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKT  321 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~  321 (496)
                      +--+- ...+-...+.+..+.+.+|.+
T Consensus       151 LiAV~-qD~sG~a~~~Ala~AkgiGg~  176 (338)
T COG0059         151 LIAVH-QDASGKALDIALAYAKGIGGT  176 (338)
T ss_pred             EEEEE-eCCCchHHHHHHHHHHhcCCC
Confidence            33333 334555788888999998844

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.96  E-value=0.003  Score=63.99  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             eEEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966          148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (496)
                      ++++|||+|.+|...+..++ ..+. +|++|++++++++...+++...+      |           -.+...++++ .+
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-----------~~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-----------IDVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence            58999999999999999987 4675 79999999998887655432111      1           0122334443 47


Q ss_pred             cCCCEEEEeccCCh
Q 010966          225 KDVDMVIEAIIENV  238 (496)
Q Consensus       225 ~~aDlVIeav~e~~  238 (496)
                      .+||+||.|.|...
T Consensus       193 ~~aDiVvtaT~s~~  206 (326)
T TIGR02992       193 SGADIIVTTTPSET  206 (326)
T ss_pred             ccCCEEEEecCCCC
Confidence            89999999997643

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PLN02494 adenosylhomocysteinase

Probab=96.94  E-value=0.005  Score=64.51  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|+|.|.+|.++|..+...|.+|+++|+++.....+.           ..|.             ... ++ +.++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence            6899999999999999999999999999999987543321           1121             001 22 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER  273 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~  273 (496)
                      +|+||++....    ..+..+..+.++++++|+....   .+....+.+.
T Consensus       310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            99999875432    2233555567899998875544   2445555543

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.92  E-value=0.0052  Score=59.56  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=45.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .+||+|||+|.||..++..+...+   ++ +.++|++++..+....                         .....++++
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~   56 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLP   56 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHH
Confidence            369999999999999999987543   44 4567887765444211                         122345566


Q ss_pred             cc--cCCCEEEEeccC
Q 010966          223 SF--KDVDMVIEAIIE  236 (496)
Q Consensus       223 ~~--~~aDlVIeav~e  236 (496)
                      ++  ..+|+|+||...
T Consensus        57 ~ll~~~~DlVVE~A~~   72 (267)
T PRK13301         57 GLLAWRPDLVVEAAGQ   72 (267)
T ss_pred             HHhhcCCCEEEECCCH
Confidence            53  789999999863

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.90  E-value=0.0036  Score=53.70  Aligned_cols=99  Identities=22%  Similarity=0.219  Sum_probs=58.7

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-
Q 010966          149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (496)
                      ||+|||+ |.+|..++..+... ++++..+ +++.+..+....          ..+.++.        .+....+.+.+ 
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~   62 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKG--------EVVLELEPEDFE   62 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCccccc--------ccccccccCChh
Confidence            5899995 99999999999885 8887766 544322111110          0011100        00001111222 


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                       .++|+||.|+|.+...  ++...+...+.+++++++.+|++..
T Consensus        63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~  104 (122)
T smart00859       63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM  104 (122)
T ss_pred             hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence             4899999999987543  3333344556789999988887753

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.90  E-value=0.0013  Score=61.46  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=36.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|+|+ |.+|..++..|+..|++|++++++.++++...+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~   70 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD   70 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            58999996 999999999999999999999999887766443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.88  E-value=0.0062  Score=56.95  Aligned_cols=92  Identities=22%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      ++|++||+|.+|..+...+-..  .+ .|.+||++.+++....+..          +             ....+++++ 
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------~-------------~~~~s~ide~   57 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------G-------------RRCVSDIDEL   57 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------C-------------CCccccHHHH
Confidence            4899999999999999877543  24 5899999999876543210          1             112355655 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      +.+.|+|+||...+ +++.-+.+-|++  .-+.|+.|. +.+.
T Consensus        58 ~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~SV-GALa   96 (255)
T COG1712          58 IAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVMSV-GALA   96 (255)
T ss_pred             hhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEEec-hhcc
Confidence            48999999998532 233222233332  456777764 3344

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.02  Score=56.04  Aligned_cols=127  Identities=17%  Similarity=0.216  Sum_probs=78.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      |+||+-||+|.+|+.-...++..  .++|+++|++..++..-...-    +..++..++.         ..-.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence            57999999999999888777654  569999999998776532211    1111111111         11135667788


Q ss_pred             cc-cccCCCEEEEeccC-------------ChHHHHHHHHHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeec
Q 010966          221 YE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA  283 (496)
Q Consensus       221 ~~-~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~  283 (496)
                      .+ .++.+|+|+.+|..             |+..-.+.-+.+.+....+.|++ --|+.|+.   .|...+.+..  -|+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~--~~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNS--KGI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCC--CCc
Confidence            75 58999999998832             33333444455667666777765 45666653   4444443222  255


Q ss_pred             cc
Q 010966          284 HF  285 (496)
Q Consensus       284 hf  285 (496)
                      ||
T Consensus       149 ~f  150 (481)
T KOG2666|consen  149 KF  150 (481)
T ss_pred             ee
Confidence            55

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.83  E-value=0.019  Score=53.94  Aligned_cols=129  Identities=22%  Similarity=0.268  Sum_probs=78.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||+|.||...+..|..+|.+|++++++.. .+..           ....+.+.-         ..-.-..+++.+
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~~---------~~~~~~~~~l~~   70 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIRW---------KQKEFEPSDIVD   70 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEEE---------EecCCChhhcCC
Confidence            6899999999999999999999999999986532 1111           112222110         000111345889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS  304 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~  304 (496)
                      +|+||-|.. +.++...+....    ..+. ++.+.            ..|+.   ..|+.|.  ...+++--+.+.+.+
T Consensus        71 adlViaaT~-d~elN~~i~~~a----~~~~-lvn~~------------d~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s  129 (202)
T PRK06718         71 AFLVIAATN-DPRVNEQVKEDL----PENA-LFNVI------------TDAES---GNVVFPSALHRGKLTISVSTDGAS  129 (202)
T ss_pred             ceEEEEcCC-CHHHHHHHHHHH----HhCC-cEEEC------------CCCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence            999998864 555655554433    2333 33221            12222   2466664  345666666777778


Q ss_pred             HHHHHHHHHHHHH
Q 010966          305 PQVIVDLLDIGKK  317 (496)
Q Consensus       305 ~e~~~~~~~l~~~  317 (496)
                      |.....+++-++.
T Consensus       130 P~la~~lr~~ie~  142 (202)
T PRK06718        130 PKLAKKIRDELEA  142 (202)
T ss_pred             hHHHHHHHHHHHH
Confidence            8877777766665

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.83  E-value=0.0012  Score=69.10  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~  185 (496)
                      ++|+|||+|.||..++..|...| .+|++++++++.++.
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~  219 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED  219 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            58999999999999999999999 689999999887654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.82  E-value=0.0021  Score=58.20  Aligned_cols=38  Identities=32%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      |||+|||+ |..|+.|+.-...+||+|+.+-||++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            69999999 999999999999999999999999988754

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.81  E-value=0.0081  Score=66.95  Aligned_cols=95  Identities=11%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             EEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCcCC------------CCCe
Q 010966          230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAH------------VMPL  294 (496)
Q Consensus       230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P~~------------~~~l  294 (496)
                      ||.|+|-  ....+++.++.++++++++|++.+|+..  +..+...+.. +.+|+|.||+...+            ....
T Consensus         1 vila~Pv--~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAPV--AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcCH--HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            6889984  4566889999999999999999888763  3455555543 35799999996543            2456


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +.+++.+.++++.++.+.++++.+|..++.+.
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~  110 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMS  110 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            77889999999999999999999999988885

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.79  E-value=0.0043  Score=61.38  Aligned_cols=72  Identities=21%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~  225 (496)
                      ++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+..       .+            .+....+ .+.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            58999999999999999999999 6999999999887665433210       00            0111112 24467


Q ss_pred             CCCEEEEeccCCh
Q 010966          226 DVDMVIEAIIENV  238 (496)
Q Consensus       226 ~aDlVIeav~e~~  238 (496)
                      ++|+||.|+|...
T Consensus       185 ~~DivInaTp~g~  197 (278)
T PRK00258        185 DFDLIINATSAGM  197 (278)
T ss_pred             cCCEEEECCcCCC
Confidence            8999999998653

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.79  E-value=0.0049  Score=62.57  Aligned_cols=74  Identities=23%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.+|...+..+.. .+ .+|.+|++++++++...+++.+.+      | +          .+....++ +.+
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al  195 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV  195 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence            589999999999999888875 45 489999999998887654432211      1 0          12334454 457


Q ss_pred             cCCCEEEEeccCCh
Q 010966          225 KDVDMVIEAIIENV  238 (496)
Q Consensus       225 ~~aDlVIeav~e~~  238 (496)
                      .++|+||.|.|...
T Consensus       196 ~~aDiVi~aT~s~~  209 (330)
T PRK08291        196 AGADIIVTTTPSEE  209 (330)
T ss_pred             ccCCEEEEeeCCCC
Confidence            88999999987653

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.78  E-value=0.0032  Score=67.12  Aligned_cols=70  Identities=21%  Similarity=0.310  Sum_probs=51.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++++|+|+|.||.+++..|+..|++|+++|+++++++...+.+        .....             ...+...+.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~-------------~~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAF-------------PLESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------cccee-------------chhHhcccCCC
Confidence            5899999999999999999999999999999988766543211        00000             01122336789


Q ss_pred             CEEEEeccCCh
Q 010966          228 DMVIEAIIENV  238 (496)
Q Consensus       228 DlVIeav~e~~  238 (496)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999998664

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=96.76  E-value=0.0047  Score=62.48  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=35.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchH------------HHHHHHHHHhhhcc
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH   42 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l------------~~~A~~~a~~l~~~   42 (496)
                      |++||++++|+||+++||||+|||+.++            ++.+.++++.+...
T Consensus       188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  241 (360)
T TIGR03200       188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE  241 (360)
T ss_pred             HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence            5789999999999999999999998887            66677777666654

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.75  E-value=0.0027  Score=66.71  Aligned_cols=69  Identities=22%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~  225 (496)
                      ++|+|||+|.||..++..+...|. +|++++++++.++...+.+          |.           ......+ .+.+.
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~  241 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF----------GG-----------EAIPLDELPEALA  241 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----------CC-----------cEeeHHHHHHHhc
Confidence            689999999999999999999997 8999999998765433211          10           0001112 23467


Q ss_pred             CCCEEEEeccCC
Q 010966          226 DVDMVIEAIIEN  237 (496)
Q Consensus       226 ~aDlVIeav~e~  237 (496)
                      ++|+||.|++..
T Consensus       242 ~aDvVI~aT~s~  253 (423)
T PRK00045        242 EADIVISSTGAP  253 (423)
T ss_pred             cCCEEEECCCCC
Confidence            899999998644

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.75  E-value=0.0029  Score=61.80  Aligned_cols=94  Identities=17%  Similarity=0.136  Sum_probs=56.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      +||+|+|+ |.||..++..+... +++++ ++|++++.....            ..            ..+...++++. 
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            59999998 99999999888764 67755 488887643321            00            01223445543 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHH
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~l  270 (496)
                      ++++|+||++.+.+..  .++...   .+..+.-++.-|++++.+++
T Consensus        58 l~~~DvVid~t~p~~~--~~~~~~---al~~G~~vvigttG~s~~~~   99 (257)
T PRK00048         58 LADADVLIDFTTPEAT--LENLEF---ALEHGKPLVIGTTGFTEEQL   99 (257)
T ss_pred             ccCCCEEEECCCHHHH--HHHHHH---HHHcCCCEEEECCCCCHHHH
Confidence            4679999998865432  223222   23334433333556665543

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.72  E-value=0.025  Score=47.91  Aligned_cols=68  Identities=29%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      .||+|||+|.+|......+...  +.+| .++|++++..+...+.          .|             +...+|+++ 
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~~-------------~~~~~~~~~l   57 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------YG-------------IPVYTDLEEL   57 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-------------SEEESSHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------hc-------------ccchhHHHHH
Confidence            3899999999999999888776  4564 5889999887764221          11             223455543 


Q ss_pred             cc--CCCEEEEeccCCh
Q 010966          224 FK--DVDMVIEAIIENV  238 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~  238 (496)
                      ++  +.|+|+.++|...
T Consensus        58 l~~~~~D~V~I~tp~~~   74 (120)
T PF01408_consen   58 LADEDVDAVIIATPPSS   74 (120)
T ss_dssp             HHHTTESEEEEESSGGG
T ss_pred             HHhhcCCEEEEecCCcc
Confidence            33  6899999998754

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.69  E-value=0.0041  Score=58.51  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            489999999999999999999998 899999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.68  E-value=0.0056  Score=60.67  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=36.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|||+|-+|++++..|+..|. +|++++|++++++...+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            479999999999999999999997 79999999988776543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.67  E-value=0.1  Score=52.61  Aligned_cols=40  Identities=28%  Similarity=0.198  Sum_probs=33.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|+|+|+|-+|.--.+.....|.+|+.+|+++++++.++
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~  207 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK  207 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence            5899999997776666666668999999999999887754

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.66  E-value=0.0037  Score=64.42  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      -.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            3579999999999999999999999999999999876553

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.64  E-value=0.0062  Score=61.01  Aligned_cols=104  Identities=18%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      -++|+|+|+|.+|..+|+.|..-|..+.-+.+++...+...+           .+           ..  ..+..+-+.+
T Consensus       162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~-----------~~--~~d~~~~~~~  217 (336)
T KOG0069|consen  162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YY-----------AE--FVDIEELLAN  217 (336)
T ss_pred             CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hc-----------cc--ccCHHHHHhh
Confidence            478999999999999999999999444444555443332211           01           00  1222345789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~  274 (496)
                      +|+||.|.|-+.+...-+=+++...++++++|+...=+  +.-.++.+.+
T Consensus       218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL  267 (336)
T KOG0069|consen  218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL  267 (336)
T ss_pred             CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence            99999999999887777777888999999988755433  3345666666

>PLN00203 glutamyl-tRNA reductase

Probab=96.64  E-value=0.0031  Score=67.56  Aligned_cols=84  Identities=13%  Similarity=0.207  Sum_probs=55.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~  224 (496)
                      -++|+|||+|.||..++..|...|+ +|++++++++.++...+..        . + ..        -......+ .+.+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~--------~-g-~~--------i~~~~~~dl~~al  327 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF--------P-D-VE--------IIYKPLDEMLACA  327 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh--------C-C-Cc--------eEeecHhhHHHHH
Confidence            4689999999999999999999997 7999999998876643211        0 1 00        00111122 2457


Q ss_pred             cCCCEEEEeccCCh-HHHHHHHHHH
Q 010966          225 KDVDMVIEAIIENV-SLKQQIFADL  248 (496)
Q Consensus       225 ~~aDlVIeav~e~~-~~k~~v~~~l  248 (496)
                      .++|+||.|++... -+..+.++.+
T Consensus       328 ~~aDVVIsAT~s~~pvI~~e~l~~~  352 (519)
T PLN00203        328 AEADVVFTSTSSETPLFLKEHVEAL  352 (519)
T ss_pred             hcCCEEEEccCCCCCeeCHHHHHHh
Confidence            88999999875432 2344444444

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.63  E-value=0.023  Score=65.36  Aligned_cols=77  Identities=22%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             cccceEEEEEeCChhhHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 010966          144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE  209 (496)
Q Consensus       144 ~~~~~kV~VIGaG~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~  209 (496)
                      ...+++|+|||+|.||+.+|..|++. +++             |++.|++++.+++..+..         .+ +      
T Consensus       566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~------  629 (1042)
T PLN02819        566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-A------  629 (1042)
T ss_pred             cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-C------
Confidence            34578999999999999999999875 344             999999998776543211         01 0      


Q ss_pred             hhhcceec-ccCcc----cccCCCEEEEeccCChH
Q 010966          210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS  239 (496)
Q Consensus       210 ~~~~~i~~-~~~~~----~~~~aDlVIeav~e~~~  239 (496)
                         .-+.. .+|.+    .++++|+||.|+|....
T Consensus       630 ---~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H  661 (1042)
T PLN02819        630 ---EAVQLDVSDSESLLKYVSQVDVVISLLPASCH  661 (1042)
T ss_pred             ---ceEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence               00111 22322    24679999999997653

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.62  E-value=0.0067  Score=61.65  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            489999999999999999999998 899999985

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.61  E-value=0.0027  Score=62.40  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      |+||+|||+|.||..++..+.+. +.++..+ +++.. .+.....        ..             ..+..+++++++
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l   58 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDAL   58 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHh
Confidence            36999999999999999998875 5665443 33221 1111100        00             012345556554


Q ss_pred             -cCCCEEEEeccCC
Q 010966          225 -KDVDMVIEAIIEN  237 (496)
Q Consensus       225 -~~aDlVIeav~e~  237 (496)
                       .+.|+||||.+..
T Consensus        59 ~~~~DvVve~t~~~   72 (265)
T PRK13303         59 PQRPDLVVECAGHA   72 (265)
T ss_pred             ccCCCEEEECCCHH
Confidence             4689999999865

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.60  E-value=0.006  Score=59.76  Aligned_cols=100  Identities=19%  Similarity=0.199  Sum_probs=54.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---  220 (496)
                      -+||++||+|.+-.+.-......  |..|..+|+++++.+.+.+-+...+.            ..   .++++. .|   
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~------------L~---~~m~f~~~d~~~  185 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG------------LS---KRMSFITADVLD  185 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H------------H----SSEEEEES-GGG
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc------------cc---CCeEEEecchhc
Confidence            35999999999987765544443  56799999999998876543331110            11   122221 12   


Q ss_pred             c-ccccCCCEEEEecc--CChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          221 Y-ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       221 ~-~~~~~aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      . .+++++|+|+.|.-  .+.+-|.+++..|.++++++++|+.-
T Consensus       186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            1 35788999999863  23446999999999999999988754

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.60  E-value=0.0034  Score=53.84  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=58.2

Q ss_pred             EEEEEe-CChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-Ccccc
Q 010966          149 KVAILG-GGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF  224 (496)
Q Consensus       149 kV~VIG-aG~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  224 (496)
                      ||+||| +|.+|+.+...|..+ .++ +.++..+.+.-.....    .    ..        .......+.... +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~----~~--------~~~~~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----V----FP--------HPKGFEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----T----TG--------GGTTTEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----h----cc--------ccccccceeEeecchhHh
Confidence            799999 799999999999985 335 5555655521111000    0    00        000011222222 44568


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      .++|+||.|+|..  ...++...+   +..++.++++++.+.+
T Consensus        65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~  102 (121)
T PF01118_consen   65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRL  102 (121)
T ss_dssp             TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred             hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence            9999999999854  344554444   4678888888887643

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06046 alanine dehydrogenase; Validated

Probab=96.59  E-value=0.0078  Score=60.98  Aligned_cols=93  Identities=16%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      .++|+|||+|.||...+..+.. .+. .|.+||++++..++..+++.+.+      +           -.+...++.++ 
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~  191 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA  191 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence            3589999999999999988874 344 79999999998887655432110      1           11233445544 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ++ +|+|+.|.|....+    |.  .+.+++++.|.+..|
T Consensus       192 l~-aDiVv~aTps~~P~----~~--~~~l~~g~hV~~iGs  224 (326)
T PRK06046        192 CD-CDILVTTTPSRKPV----VK--AEWIKEGTHINAIGA  224 (326)
T ss_pred             hh-CCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence            44 99999999865332    21  123567776655544

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.55  E-value=0.025  Score=56.74  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~  180 (496)
                      .||+|||+|.||..++..+..+ +++++ ++|+++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~   38 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG   38 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence            5999999999999999988765 78876 479985

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.51  E-value=0.013  Score=49.58  Aligned_cols=90  Identities=22%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc--c
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE--S  223 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~--~  223 (496)
                      |.|+|.|.+|..++..|...+.+|+++|.+++..+...+           .|.          .-+.+. ++   ++  .
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~   59 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG   59 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence            679999999999999999977799999999998776542           221          111111 11   21  3


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +++++.||.+.+++. ....+...+.+..+.-.+++-.
T Consensus        60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEEE
T ss_pred             ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEEE
Confidence            688999999987663 3444445555555555566543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.49  E-value=0.013  Score=59.01  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      .+.++|||+|.++......+..- ++ +|.+|+++++..++...++.+.+       .          ..+...++. ++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a  192 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA  192 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence            46899999999999999887653 44 89999999999888765543221       1          123344554 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +++||+|+.|.|.+..+..      .+.+++++-|...
T Consensus       193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~ai  224 (330)
T COG2423         193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINAI  224 (330)
T ss_pred             hhcCCEEEEecCCCCCeec------HhhcCCCcEEEec
Confidence            8999999999986543211      1235566655443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.39  E-value=0.014  Score=58.31  Aligned_cols=94  Identities=17%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      .++++|||+|.+|..-+..++.- .+ +|.+|++++++++...+++...+      |           -.+....+. +.
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea  179 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA  179 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence            35899999999999888877653 44 89999999999887665543211      1           123344454 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +.+||+|+.|.+....+    +.  .+.++|++.|....|
T Consensus       180 v~~aDIV~taT~s~~P~----~~--~~~l~pg~hV~aiGs  213 (301)
T PRK06407        180 LRDADTITSITNSDTPI----FN--RKYLGDEYHVNLAGS  213 (301)
T ss_pred             HhcCCEEEEecCCCCcE----ec--HHHcCCCceEEecCC
Confidence            89999999998765332    21  124566765554433

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.36  E-value=0.014  Score=53.42  Aligned_cols=91  Identities=20%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCc----cc
Q 010966          150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY----ES  223 (496)
Q Consensus       150 V~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~~  223 (496)
                      |.|+|+ |.+|..++..|.+.|++|+++-|+++.++.              ...         ...+... .+.    +.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--------------~~~---------~~~~~~d~~d~~~~~~a   57 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--------------SPG---------VEIIQGDLFDPDSVKAA   57 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--------------CTT---------EEEEESCTTCHHHHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--------------ccc---------cccceeeehhhhhhhhh
Confidence            789997 999999999999999999999999986553              000         0111111 111    34


Q ss_pred             ccCCCEEEEeccC---ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          224 FKDVDMVIEAIIE---NVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       224 ~~~aDlVIeav~e---~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +++||.||.+++.   +...-+.+++.+++.-.+..++.|..+
T Consensus        58 l~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   58 LKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence            7899999999973   233334445555443223334444433

...

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.35  E-value=0.0099  Score=58.63  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=52.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|+|+|-++++++..|+..|. +|++++|+.+++++..+...+...      .+.          .....+++...+
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~~----------~~~~~~~~~~~~  190 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AVE----------AAALADLEGLEE  190 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------ccc----------cccccccccccc
Confidence            689999999999999999999995 799999999998776544321110      000          001122333336


Q ss_pred             CCEEEEeccCCh
Q 010966          227 VDMVIEAIIENV  238 (496)
Q Consensus       227 aDlVIeav~e~~  238 (496)
                      +|+||.|+|-.+
T Consensus       191 ~dliINaTp~Gm  202 (283)
T COG0169         191 ADLLINATPVGM  202 (283)
T ss_pred             cCEEEECCCCCC
Confidence            899999998654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.31  E-value=0.043  Score=57.64  Aligned_cols=37  Identities=30%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      .++|+|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            3589999999999999999999999999999887643

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.31  E-value=0.013  Score=63.99  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=62.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  225 (496)
                      .+|.|+|+|.+|..+|..|.+.|++|+++|.|+++.+...+           .|..      ...+..+-.+.+  ..++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~------~i~GD~~~~~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIR------AVLGNAANEEIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCe------EEEcCCCCHHHHHhcCcc
Confidence            57999999999999999999999999999999998776532           1210      000000000112  2367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      ++|.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus       481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR  514 (558)
T ss_pred             ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence            9999999998875432 333445555444455554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.30  E-value=0.014  Score=64.11  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=66.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  225 (496)
                      .+|.|+|.|.+|..+++.|.++|++|+++|.|++.++...+           .|..      -..+..+-.+.+  ..++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence            58999999999999999999999999999999998876532           1210      000100000112  2368


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +||.||.+++++.. ...+...+.+..++-.|++-..+.
T Consensus       464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCCH
Confidence            99999999987643 334555566665655677654443

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.29  E-value=0.025  Score=54.37  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcC-CCeeeeccccCcC--CCCCe
Q 010966          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA--HVMPL  294 (496)
Q Consensus       218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~-~~r~ig~hf~~P~--~~~~l  294 (496)
                      ++|.++++++|++|.=.|..- ..-.+.+++..++++++||+ ||-++|...+...+.. ..+-+|+.-|.|.  +.++.
T Consensus       133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~G  210 (342)
T PRK00961        133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMKG  210 (342)
T ss_pred             cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCCC
Confidence            456788999999999998653 12367888888999999874 6667776655544321 1123444444442  22332


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      -..+.-.-.++|.++...++.+..|+.++.+.
T Consensus       211 q~~i~egyAtEEqI~klveL~~sa~k~ay~~P  242 (342)
T PRK00961        211 QVYIAEGYADEEAVEKLYEIGKKARGNAFKMP  242 (342)
T ss_pred             ceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            22333445689999999999999999999875

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.28  E-value=0.049  Score=56.48  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             ceEEEEEeCChhhHHHHH-HHH-h----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGLMGSGIAT-ALI-L----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~-~la-~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      ..||+|||+|..+.+--. .+. +    .+.++.++|+++++++.    +....++.++.-...        -++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecC
Confidence            358999999988765432 222 2    25699999999998873    223333444432111        34667777


Q ss_pred             c-ccccCCCEEEEec
Q 010966          221 Y-ESFKDVDMVIEAI  234 (496)
Q Consensus       221 ~-~~~~~aDlVIeav  234 (496)
                      . +++++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            6 5799999999886

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.26  E-value=0.021  Score=57.45  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      .++++|||+|.++...+..+... . -+|.+|++++++.+...+.++       +.+           -.+...++. +.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~a  189 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAEV  189 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHHH
Confidence            35899999999999999877653 2 389999999999887654322       111           123334454 55


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +++||+|+.|.+....+    |.  .+.+++++.|....|.
T Consensus       190 v~~ADIV~taT~s~~P~----~~--~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        190 AHAANLIVTTTPSREPL----LQ--AEDIQPGTHITAVGAD  224 (315)
T ss_pred             hcCCCEEEEecCCCCce----eC--HHHcCCCcEEEecCCC
Confidence            89999999998755432    21  1245677776655443

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.25  E-value=0.0063  Score=63.51  Aligned_cols=69  Identities=17%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~  225 (496)
                      ++|.|||+|-||..++..|+..|. ++++++|+.++++...+.+.        .+            .....++ .+.+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~------------~~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NA------------SAHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CC------------eEecHHHHHHHhc
Confidence            589999999999999999999996 79999999887655432110        00            0111122 24578


Q ss_pred             CCCEEEEeccC
Q 010966          226 DVDMVIEAIIE  236 (496)
Q Consensus       226 ~aDlVIeav~e  236 (496)
                      ++|+||.|++.
T Consensus       242 ~aDiVI~aT~a  252 (414)
T PRK13940        242 KADIIIAAVNV  252 (414)
T ss_pred             cCCEEEECcCC
Confidence            89999999864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.24  E-value=0.015  Score=61.53  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      |+|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            489999999999999999999999999999999987654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.20  E-value=0.013  Score=51.76  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999873

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.20  E-value=0.055  Score=48.66  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=72.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccC--cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--YESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--~~~~  224 (496)
                      ++|.|||+|.+|...+..|...|++|++++.+  ..+...+           .+            .+.. ...  .+++
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-----------l~------------~i~~~~~~~~~~dl   68 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-----------LP------------YITWKQKTFSNDDI   68 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-----------cc------------CcEEEecccChhcC
Confidence            58999999999999999999999999999643  2222110           01            1111 112  2358


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC--CCCeEEEEeCCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQ  302 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~  302 (496)
                      .++|+||-|.. +.++...+.....    ...++ .+..            .|+.   ..|+.|..  ..+++--+...+
T Consensus        69 ~~a~lViaaT~-d~e~N~~i~~~a~----~~~~v-n~~d------------~~~~---~~f~~pa~v~~~~l~iaisT~G  127 (157)
T PRK06719         69 KDAHLIYAATN-QHAVNMMVKQAAH----DFQWV-NVVS------------DGTE---SSFHTPGVIRNDEYVVTISTSG  127 (157)
T ss_pred             CCceEEEECCC-CHHHHHHHHHHHH----HCCcE-EECC------------CCCc---CcEEeeeEEEECCeEEEEECCC
Confidence            89999998864 5555444433322    22222 2211            1221   24556643  345555556666


Q ss_pred             CCHHHHHHHHHHHHH
Q 010966          303 TSPQVIVDLLDIGKK  317 (496)
Q Consensus       303 t~~e~~~~~~~l~~~  317 (496)
                      .+|.....+++-++.
T Consensus       128 ~sP~la~~lr~~ie~  142 (157)
T PRK06719        128 KDPSFTKRLKQELTS  142 (157)
T ss_pred             cChHHHHHHHHHHHH
Confidence            777777666665543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.19  E-value=0.0071  Score=62.40  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=36.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|||+|-||..+|.+|+.+| .+|++.+|+.+++....+
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~  220 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK  220 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            57999999999999999999999 589999999998876543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.10  E-value=0.017  Score=58.74  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|.+|+.+|..|+++|+ +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            589999999999999999999999 999999974

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.09  E-value=0.026  Score=45.19  Aligned_cols=31  Identities=39%  Similarity=0.544  Sum_probs=28.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeC
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVILKEV  178 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~  178 (496)
                      ++++|+|+|.||..++..+... +.+|.+||+
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            5899999999999999999998 678999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06153 hypothetical protein; Provisional

Probab=96.08  E-value=0.015  Score=59.36  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~  179 (496)
                      .+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            489999999999999999999998 89999986

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.08  E-value=0.021  Score=56.17  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=25.8

Q ss_pred             eEEEEEe-CChhhHHHHHHHHh-CCCcEE-EEeCC
Q 010966          148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN  179 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~-~G~~V~-l~d~~  179 (496)
                      +||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            5999999 59999999999886 477754 46743

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.08  E-value=0.02  Score=56.42  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=53.4

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||.|. +|..+|..|...|..|++.+.....+.                                     +.+++
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            6999999987 999999999999999999986532211                                     22578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||-|++..--+..       ..++++++++...+
T Consensus       202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi  231 (286)
T PRK14175        202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN  231 (286)
T ss_pred             CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence            9999999975422222       24678888876543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.06  E-value=0.021  Score=56.06  Aligned_cols=92  Identities=22%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec----ccCc-c
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG----VLDY-E  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~----~~~~-~  222 (496)
                      .||+|||.|..|.--|+...--|-+|++.|+|.+++...-..                     +..|+..    ..++ +
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence            589999999999999998888899999999999887653210                     1122211    1123 4


Q ss_pred             cccCCCEEEEec--cCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          223 SFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       223 ~~~~aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      .+..+|+||-+|  |...+ =+-+.++..+.++|+.+|++.
T Consensus       228 ~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         228 AVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             HhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEEEE
Confidence            588999999887  22111 123566767778888888754

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.04  E-value=0.013  Score=58.90  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=54.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++++|||+|..+..-+..++. .++ +|.+|+++++.+++..+++.. +      +           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence            589999999999998887765 455 899999999988876654321 0      1           124445555 568


Q ss_pred             cCCCEEEEeccCCh--HHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       225 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      ++||+|+.|.+...  .+    +.  .+.+++++.|.+..|.
T Consensus       191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence            99999999997654  22    11  1346788877655543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.00  E-value=0.049  Score=52.56  Aligned_cols=104  Identities=18%  Similarity=0.227  Sum_probs=70.9

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHH---HhhhcCCCeeeeccccCcC--CCC
Q 010966          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI---GERTYSKDRIVGAHFFSPA--HVM  292 (496)
Q Consensus       218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~l---a~~~~~~~r~ig~hf~~P~--~~~  292 (496)
                      ++|.++++++|++|.=.|..- ..-.+.+++..++++++||+ ||-++|...+   .+.+++  +-+|+.-|.|.  +.+
T Consensus       131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R--~DvgVsS~HPaaVPgt  206 (340)
T TIGR01723       131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGR--EDLNVTSYHPGCVPEM  206 (340)
T ss_pred             cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCc--ccCCeeccCCCCCCCC
Confidence            456788999999999998653 12367888888999999875 6666766544   444443  23444444432  122


Q ss_pred             C-eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          293 P-LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       293 ~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      + -+-++ -.-.++|.++...++.+..|+.++.+.
T Consensus       207 ~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~P  240 (340)
T TIGR01723       207 KGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMP  240 (340)
T ss_pred             CCceEee-cccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            2 12233 345689999999999999999999874

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.94  E-value=0.064  Score=50.99  Aligned_cols=129  Identities=20%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ++|.|||+|.++..=+..|+..|.+|+++..+  ++- ..           ..+.|.++-         +.-.-..+++.
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~~---------~~r~~~~~dl~   84 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLKL---------IKGNYDKEFIK   84 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEEE---------EeCCCChHHhC
Confidence            48999999999999999999999999999654  332 11           112232211         11011224588


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT  303 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t  303 (496)
                      ++++||-|+ +|.++-+.+.+..    ....+++.+..            .|+.   ..|+.|+  ...+++--+.+.+.
T Consensus        85 g~~LViaAT-dD~~vN~~I~~~a----~~~~~lvn~vd------------~p~~---~dFi~PAiv~rg~l~IaIST~G~  144 (223)
T PRK05562         85 DKHLIVIAT-DDEKLNNKIRKHC----DRLYKLYIDCS------------DYKK---GLCIIPYQRSTKNFVFALNTKGG  144 (223)
T ss_pred             CCcEEEECC-CCHHHHHHHHHHH----HHcCCeEEEcC------------Cccc---CeEEeeeEEecCCEEEEEECCCc
Confidence            999999996 4666665555543    33223332221            1111   2366664  34566666666677


Q ss_pred             CHHHHHHHHHHHHH
Q 010966          304 SPQVIVDLLDIGKK  317 (496)
Q Consensus       304 ~~e~~~~~~~l~~~  317 (496)
                      +|.....+++-++.
T Consensus       145 sP~lar~lR~~ie~  158 (223)
T PRK05562        145 SPKTSVFIGEKVKN  158 (223)
T ss_pred             CcHHHHHHHHHHHH
Confidence            88776666665554

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.93  E-value=0.0094  Score=61.84  Aligned_cols=38  Identities=29%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             EEEEeCChhhHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 010966          150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~  187 (496)
                      |.|||+|.||+.++..|++.+ + +|++.|++.+++++..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~   40 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA   40 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence            789999999999999999986 4 8999999999887754

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.92  E-value=0.016  Score=55.51  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~  179 (496)
                      ++|.|+|+|.+|.++|..|...|..   |+++|++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4899999999999999999999975   9999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.89  E-value=0.031  Score=61.63  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~  224 (496)
                      -++|.|+|.|.+|..+++.|.+.|++++++|.|+++++...+           .|.      .-..+..+-.+-+  ..+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~------~v~~GDat~~~~L~~agi  462 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM------KVFYGDATRMDLLESAGA  462 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC------eEEEEeCCCHHHHHhcCC
Confidence            368999999999999999999999999999999998887532           121      0000100000012  246


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      +++|+||.++.++. ....+...+.++.++-.|++-
T Consensus       463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iiaR  497 (621)
T PRK03562        463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIAR  497 (621)
T ss_pred             CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEEE
Confidence            78999999996553 334444555555555456653

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.89  E-value=0.0085  Score=62.58  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=31.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3589999999999999999999999999999975

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.89  E-value=0.11  Score=52.92  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC
Q 010966          148 KKVAILGGGLMGSGIATALILS  169 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~  169 (496)
                      .+|+|+|+|.||+.++..+...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            5899999999999999998765

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.86  E-value=0.016  Score=45.57  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=32.6

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      ||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.86  E-value=0.049  Score=55.44  Aligned_cols=93  Identities=12%  Similarity=0.165  Sum_probs=61.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      .++++|||+|..+..-+..+.. .. -+|++|++++++.+...+++..       .+           -.+...++. +.
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a  190 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA  190 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence            3689999999999888766554 33 3899999999998876654421       11           123334554 45


Q ss_pred             ccCCCEEEEeccCCh--H-HHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 FKDVDMVIEAIIENV--S-LKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 ~~~aDlVIeav~e~~--~-~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +++||+|+-|.+...  . ++.       +.+++++.|....|.
T Consensus       191 v~~ADIIvtaT~S~~~~Pvl~~-------~~lkpG~hV~aIGs~  227 (346)
T PRK07589        191 VEGADIITTVTADKTNATILTD-------DMVEPGMHINAVGGD  227 (346)
T ss_pred             HhcCCEEEEecCCCCCCceecH-------HHcCCCcEEEecCCC
Confidence            899999999987432  1 222       245778766554443

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.82  E-value=0.016  Score=57.39  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~  189 (496)
                      ++|.|+|+|-.|++++..|+..|. +|+++||++++++...++
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~  170 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV  170 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence            589999999999999999999997 799999999887765443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.75  E-value=0.062  Score=57.43  Aligned_cols=41  Identities=20%  Similarity=0.090  Sum_probs=37.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      -.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae  205 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE  205 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            36999999999999999999999999999999999887654

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.74  E-value=0.032  Score=55.19  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=50.7

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||.|. .|.+++..|...|..|+++++....+.                                     +.+++
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~  202 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ  202 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999997 999999999999999999997432221                                     12368


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +|+||.|++...-+..       +.+++++++...
T Consensus       203 aDIvI~AtG~~~~v~~-------~~lk~gavViDv  230 (283)
T PRK14192        203 ADIIVGAVGKPELIKK-------DWIKQGAVVVDA  230 (283)
T ss_pred             CCEEEEccCCCCcCCH-------HHcCCCCEEEEE
Confidence            9999999953221211       346788877643

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.67  E-value=0.13  Score=54.85  Aligned_cols=38  Identities=29%  Similarity=0.402  Sum_probs=33.9

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      -..++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            34578999999999999999999999999999987653

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.67  E-value=0.055  Score=46.05  Aligned_cols=83  Identities=13%  Similarity=0.175  Sum_probs=52.8

Q ss_pred             eEEEEEe----CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIG----aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++|+|||    -+.+|.-+...+.++|++|+.++...+.+                             ..+....++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5799999    58899999999999999999998665322                             12334455554


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      . ...|+++.++|.+  .--++++++.+.-....++.+.
T Consensus        52 ~p~~iDlavv~~~~~--~~~~~v~~~~~~g~~~v~~~~g   88 (116)
T PF13380_consen   52 IPEPIDLAVVCVPPD--KVPEIVDEAAALGVKAVWLQPG   88 (116)
T ss_dssp             CSST-SEEEE-S-HH--HHHHHHHHHHHHT-SEEEE-TT
T ss_pred             CCCCCCEEEEEcCHH--HHHHHHHHHHHcCCCEEEEEcc
Confidence            4 6899999999744  3456777776653344444433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.62  E-value=0.13  Score=54.34  Aligned_cols=41  Identities=37%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .++|.|+|+|.+|..++..|...|++|+++|.+++..+...
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~  271 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA  271 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            57899999999999999999999999999999999876643

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=95.61  E-value=0.037  Score=57.31  Aligned_cols=39  Identities=26%  Similarity=0.470  Sum_probs=33.4

Q ss_pred             eEEEEEeCChhhHHH-HHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      |||.++|+|.||++. ...|.++|++|+++|++++..+..
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL   40 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL   40 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            589999999999855 788888999999999988866554

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.59  E-value=0.035  Score=53.67  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~  181 (496)
                      .||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            589999999999999999999997 8999998753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.58  E-value=0.059  Score=54.94  Aligned_cols=107  Identities=14%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh-cceecccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI-SLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~~~~  223 (496)
                      |.||+|+|+|.||..++..+..+ +++|+. .|.+++......++.  .++.   .+... ......- ..+....+++.
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~e   74 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIED   74 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhH
Confidence            35999999999999999988764 567554 465654433322110  0000   00000 0000000 12333344443


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                       +.++|+||+|.+....  .+..   ..++..++.++++++.
T Consensus        75 l~~~vDVVIdaT~~~~~--~e~a---~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         75 LLEKADIVVDATPGGVG--AKNK---ELYEKAGVKAIFQGGE  111 (341)
T ss_pred             hhccCCEEEECCCchhh--HHHH---HHHHHCCCEEEEcCCC
Confidence             5789999999986543  2222   2333445666666653

>PRK08223 hypothetical protein; Validated

Probab=95.54  E-value=0.037  Score=54.55  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|-+|+.++..|+++|. +++++|.+.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            489999999999999999999998 899999874

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.50  E-value=0.038  Score=56.89  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            489999999999999999999997 899999873

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.49  E-value=0.045  Score=54.41  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~  181 (496)
                      ++|.|||+|-.+++|+..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            589999999999999999999897 8999999965

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.49  E-value=0.063  Score=51.59  Aligned_cols=32  Identities=22%  Similarity=0.493  Sum_probs=29.4

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 799999864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.49  E-value=0.091  Score=56.06  Aligned_cols=41  Identities=20%  Similarity=0.103  Sum_probs=36.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      -.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~  204 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  204 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            36999999999999999999999999999999999876543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.45  E-value=0.23  Score=52.56  Aligned_cols=33  Identities=36%  Similarity=0.482  Sum_probs=31.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ++|.|+|+|.+|.++|..|+..|++|+++|++.
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            689999999999999999999999999999986

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.43  E-value=0.039  Score=52.90  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            489999999999999999999998 899998764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.42  E-value=0.046  Score=56.46  Aligned_cols=75  Identities=23%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh-C-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          147 VKKVAILGGGLMGSGIATALIL-S-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~-~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      .++++|||+|.++......++. . .+ +|.+|++++++++...+++...+     .|.          ..+...++. +
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~-----~~~----------~~v~~~~s~~e  219 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY-----PQI----------TNVEVVDSIEE  219 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-----CCC----------ceEEEeCCHHH
Confidence            4689999999999999988876 3 34 89999999999887665443211     010          013344555 4


Q ss_pred             cccCCCEEEEeccC
Q 010966          223 SFKDVDMVIEAIIE  236 (496)
Q Consensus       223 ~~~~aDlVIeav~e  236 (496)
                      .+++||+|+-|.+.
T Consensus       220 av~~ADIVvtaT~s  233 (379)
T PRK06199        220 VVRGSDIVTYCNSG  233 (379)
T ss_pred             HHcCCCEEEEccCC
Confidence            58999999998853

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.39  E-value=0.19  Score=53.89  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            58999999999999999999999999999987654

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.35  E-value=0.043  Score=56.03  Aligned_cols=100  Identities=15%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc--
Q 010966          147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--  222 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--  222 (496)
                      |+||+|||+ |.+|..++..+... +++++.+-.+.+..+...+    .+      +.+..     . .... ..+++  
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~------~~~~~-----~-~~~~-~~~~~~~   64 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VH------PHLRG-----L-VDLV-LEPLDPE   64 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hC------ccccc-----c-cCce-eecCCHH
Confidence            579999997 99999999999876 6776554333222111110    00      00000     0 0001 11121  


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~  268 (496)
                      ...++|+|+.|+|....  .++..++   ...++.|+++++...++
T Consensus        65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~  105 (343)
T PRK00436         65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK  105 (343)
T ss_pred             HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence            35689999999997643  2333333   34678899999877663

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.32  E-value=0.058  Score=53.14  Aligned_cols=39  Identities=31%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  186 (496)
                      ++|.|+|+|-.+++++..|+..|. +|++++|++++.+..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            479999999999999999999997 599999999877654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.32  E-value=0.02  Score=58.67  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999998 899999875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.27  E-value=0.03  Score=55.69  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~  181 (496)
                      +++.|+|+|-+|.+|+..|+..|.+ |++++|+++
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            5789999999999999999999996 999999973

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.24  E-value=0.52  Score=44.49  Aligned_cols=130  Identities=25%  Similarity=0.267  Sum_probs=83.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||.|..|..=+..|++.|-+|+++..+. +.+..           +.+.+.+.-         +.-.-+.+.+.+
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~   72 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD   72 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence            589999999999999999999999999998776 22222           222332211         111112345677


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC--CCCeEEEEeCCCCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS  304 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~t~  304 (496)
                      +++||-|+. |.++.+.+++...++-    +++ |.           ...|+.   ..|+.|..  ..|+.--+.+.+.+
T Consensus        73 ~~lviaAt~-d~~ln~~i~~~a~~~~----i~v-Nv-----------~D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATD-DEELNERIAKAARERR----ILV-NV-----------VDDPEL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCC-CHHHHHHHHHHHHHhC----Cce-ec-----------cCCccc---CceecceeeccCCeEEEEECCCCC
Confidence            999999985 5667777766655432    332 21           123332   45666653  46776667777778


Q ss_pred             HHHHHHHHHHHHH
Q 010966          305 PQVIVDLLDIGKK  317 (496)
Q Consensus       305 ~e~~~~~~~l~~~  317 (496)
                      |.....+++-++.
T Consensus       133 P~la~~ir~~Ie~  145 (210)
T COG1648         133 PVLARLLREKIEA  145 (210)
T ss_pred             hHHHHHHHHHHHH
Confidence            8777777766655

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.24  E-value=0.04  Score=56.98  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~  179 (496)
                      .+|.|||+|-.|+.++..|++.|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            489999999999999999999998 79999997

>PRK07877 hypothetical protein; Provisional

Probab=95.19  E-value=0.031  Score=62.12  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=29.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~  180 (496)
                      .+|+|||+| .|+.+|..|++.|.  +++++|.+.
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            489999999 89999999999995  899999864

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.12  E-value=0.065  Score=51.43  Aligned_cols=33  Identities=33%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            489999999999999999999998 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.10  E-value=0.06  Score=54.18  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      |||.|+|+ |.+|+.++..|..+|++|+..+++++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            48999996 9999999999999999999999997643

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.07  E-value=0.024  Score=59.23  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |+|+|||+|.+|.++|..|+++|++|+++|.+..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            4899999999999999999999999999999753

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.03  E-value=0.048  Score=52.60  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-----------CcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-----------~~V~l~d~~~  180 (496)
                      .||.|||+|-.|+.++..|++.|           .+++++|.+.
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            58999999999999999999864           3899999764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.03  E-value=0.058  Score=52.30  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999997 899998764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.00  E-value=0.081  Score=43.90  Aligned_cols=74  Identities=27%  Similarity=0.463  Sum_probs=50.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|.|||+|.+|..=+..|...|.+|+++..+.+..+                +.++          .. ...+ +++.+
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~   60 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG   60 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence            5899999999999999999999999999998861111                1111          00 1112 46889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHH
Q 010966          227 VDMVIEAIIENVSLKQQIFADLE  249 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~  249 (496)
                      +|+||.|. ++.++.+.+.+...
T Consensus        61 ~~lV~~at-~d~~~n~~i~~~a~   82 (103)
T PF13241_consen   61 ADLVFAAT-DDPELNEAIYADAR   82 (103)
T ss_dssp             ESEEEE-S-S-HHHHHHHHHHHH
T ss_pred             heEEEecC-CCHHHHHHHHHHHh
Confidence            99999775 45666666666544

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.97  E-value=0.11  Score=55.40  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .-++|.|||+|..|.++|..|+..|++|+++|.++.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            346899999999999999999999999999997653

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.97  E-value=0.094  Score=55.16  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=26.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--------G~--~-V~l~d~~~~~  182 (496)
                      .+|+|||+|.||++++..+..+        |.  + +.++|++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~   49 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK   49 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence            5899999999999999877543        33  3 4566888654

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.087  Score=51.61  Aligned_cols=110  Identities=20%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             HHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 010966          123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG  201 (496)
Q Consensus       123 ~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g  201 (496)
                      .+||....+.|..+           +-|.|||+|-+|+-.+..|+++|+ ++.++|.++-.+......   ....+..-|
T Consensus        61 ~aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrH---s~Atl~DVG  126 (430)
T KOG2018|consen   61 YAFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRH---SCATLADVG  126 (430)
T ss_pred             HhhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhh---hhhhHhhcC
Confidence            36777666655433           359999999999999999999998 688889877555432211   111111222


Q ss_pred             CCCHHHHHhhhcceec-----------c-cCccc--ccCCCEEEEeccCChHHHHHHHHH
Q 010966          202 KMTQEKFEKTISLLTG-----------V-LDYES--FKDVDMVIEAIIENVSLKQQIFAD  247 (496)
Q Consensus       202 ~~~~~~~~~~~~~i~~-----------~-~~~~~--~~~aDlVIeav~e~~~~k~~v~~~  247 (496)
                      .....-....+..|.+           + ++.++  ..+-|+|++|+ ++.+.|-.+++-
T Consensus       127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y  185 (430)
T KOG2018|consen  127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY  185 (430)
T ss_pred             CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence            2221112222222111           1 22233  46799999998 577778777664

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.81  E-value=0.067  Score=52.74  Aligned_cols=70  Identities=14%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|+|||.|.. |..+|..|.+.|..|++.....                                      .++ +.++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~  200 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR  200 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence            68999999877 9999999999999999865321                                      122 2367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      +||+||.+++..-     ++..  ..++++++++...
T Consensus       201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVG  230 (285)
T PRK14189        201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVG  230 (285)
T ss_pred             hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcc
Confidence            8999999998432     2322  5678999887643

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.81  E-value=0.045  Score=53.58  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            489999999999999999999995 899999874

>PRK05868 hypothetical protein; Validated

Probab=94.67  E-value=0.029  Score=57.89  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=32.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |++|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            56899999999999999999999999999998865

>PLN00016 RNA-binding protein; Provisional

Probab=94.65  E-value=0.077  Score=54.84  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             cceEEEEE----eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       146 ~~~kV~VI----Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      .++||.|+    |+ |.+|+.++..|...||+|++++++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            45789999    76 999999999999999999999998764

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.64  E-value=0.16  Score=50.43  Aligned_cols=97  Identities=20%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcceecccCcccc
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~  224 (496)
                      .||+|||+|.+|......+.+. +.++ .++|++++.......         .+.|.-. ....+..+.       ..++
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~   68 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF   68 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence            5899999999999977777654 5664 578998864321111         1123111 001111110       0123


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      .+.|+|+++.+....  .+...   .....++.+.++++..
T Consensus        69 ~dIDiVf~AT~a~~H--~e~a~---~a~eaGk~VID~sPA~  104 (302)
T PRK08300         69 DDIDIVFDATSAGAH--VRHAA---KLREAGIRAIDLTPAA  104 (302)
T ss_pred             CCCCEEEECCCHHHH--HHHHH---HHHHcCCeEEECCccc
Confidence            679999999986533  22222   2335677777776643

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.58  E-value=0.015  Score=57.40  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=29.0

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            68999999999999999999998 799988653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=94.57  E-value=0.042  Score=55.41  Aligned_cols=31  Identities=32%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      .|+|||+|..|.++|..|++.|++|+++|.+
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.54  E-value=0.23  Score=50.31  Aligned_cols=73  Identities=22%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             cceEEEEEeCChhh-HHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          146 RVKKVAILGGGLMG-SGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       146 ~~~kV~VIGaG~mG-~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      .+.||+|||+|.++ ...+..+...+   .-|.++|+++++++...+.          -|.            -...+++
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~------------~~~~~~~   59 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI------------AKAYTDL   59 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC------------CcccCCH
Confidence            35799999998554 55777777765   3577889999987765432          110            0234556


Q ss_pred             cc-c--cCCCEEEEeccCChHH
Q 010966          222 ES-F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       222 ~~-~--~~aDlVIeav~e~~~~  240 (496)
                      ++ +  .+.|+|+.|+|.+...
T Consensus        60 ~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673          60 EELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             HHHhcCCCCCEEEEcCCChhhH
Confidence            54 3  3479999999987653

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.54  E-value=0.11  Score=49.69  Aligned_cols=31  Identities=32%  Similarity=0.339  Sum_probs=29.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEE-EEeC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVI-LKEV  178 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~-l~d~  178 (496)
                      ++|+|.|.|.+|..+|..|...|.+|+ +.|.
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            689999999999999999999999988 7787

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.52  E-value=0.094  Score=53.67  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=35.0

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG  188 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  188 (496)
                      +|.|+|+|.+|.-.++.+...|. +|++.|+++++++.+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            89999999999998888888885 78888999999987653

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=94.46  E-value=0.21  Score=47.57  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~  181 (496)
                      .+|.|+|.|-+|+-.+..|++.|+ +++++|.+.=
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v   65 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV   65 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence            489999999999999999999998 8999998764

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.41  E-value=0.038  Score=55.70  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|+|||+|.-|..+|..|+++|++|+++|+++.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            3799999999999999999999999999999764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.41  E-value=0.082  Score=47.62  Aligned_cols=74  Identities=22%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||-+ ..|..++..|.+.|..|++.+.....++                                     +.++.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence            689999996 5899999999999999999886543222                                     22578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      ||+||.++...--++.       ..+++++++++.....
T Consensus        80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVGINY  111 (160)
T ss_dssp             SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--CEE
T ss_pred             ccEEeeeecccccccc-------ccccCCcEEEecCCcc
Confidence            9999999965433332       3568999888655443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.41  E-value=0.12  Score=50.90  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=51.4

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||.| ..|..+|..|...|..|++.+.....+.                                     +.+++
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            689999999 9999999999999999999864332221                                     12568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ||+||-|+...--++.       ..++++++++..
T Consensus       201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDv  228 (285)
T PRK14191        201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDI  228 (285)
T ss_pred             CCEEEEecCCCCcCCH-------HHcCCCcEEEEe
Confidence            9999999964322222       345888888754

>PLN03075 nicotianamine synthase; Provisional

Probab=94.39  E-value=0.16  Score=50.28  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---  220 (496)
                      -++|+.||+|..|-+-...++..  +-.++.+|++++.++.+++.+..      +.| +        -+++++. .|   
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchhh
Confidence            46899999999987655544443  44799999999999887654321      011 1        1223332 12   


Q ss_pred             -cccccCCCEEEEeccC--ChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          221 -YESFKDVDMVIEAIIE--NVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       221 -~~~~~~aDlVIeav~e--~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                       .....+.|+|+..+--  +.+-|.+++..+.+.++|+.++..-+
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence             1135688999988522  12458899999999999999887554

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.35  E-value=0.057  Score=41.18  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=27.2

Q ss_pred             EEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          152 ILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       152 VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |||+|.-|...|..|++.|++|+++|.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998753

...

>PRK12828 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.065  Score=50.85  Aligned_cols=39  Identities=33%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++.....
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT   47 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence            57889987 9999999999999999999999998765543

>cd05295 MDH_like Malate dehydrogenase-like

Probab=94.31  E-value=0.31  Score=51.21  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec
Q 010966          148 KKVAILGG-GLMGSGIATALILS---NY----PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (496)
                      -+|+|-|+ |.+|-++...+++.   |.    .++|+|+  +.+.++...-.+.+..-              ..+..+..
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence            48999988 99999999998874   42    5889999  56665544333322110              11122222


Q ss_pred             -ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCC-CeeEec
Q 010966          218 -VLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPP-HCILAS  260 (496)
Q Consensus       218 -~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~-~~il~s  260 (496)
                       +.+++++++||+||.+.-              .+..+.+.+...|.++.++ ..|++.
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv  248 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVA  248 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence             456889999999998751              1223445555667777662 344443

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07411 hypothetical protein; Validated

Probab=94.30  E-value=0.097  Score=54.38  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|-.|+.++..|+..|+ +++++|.+.
T Consensus        39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            489999999999999999999998 799999864

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.30  E-value=0.046  Score=56.68  Aligned_cols=34  Identities=35%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|...|..|++.|++|+++|++++
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            5899999999999999999999999999999865

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.28  E-value=0.13  Score=50.24  Aligned_cols=47  Identities=28%  Similarity=0.308  Sum_probs=41.6

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 010966          146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA  192 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~  192 (496)
                      ..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+++++
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            4567888898 9999999999999999999999999999987776654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.27  E-value=0.052  Score=47.36  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      +||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            589999999999999999999998 799999764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=94.24  E-value=0.045  Score=56.22  Aligned_cols=33  Identities=24%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|.|||+|.+|.++|..|++.|++|+++|+..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            369999999999999999999999999999874

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.23  E-value=0.52  Score=49.82  Aligned_cols=34  Identities=26%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|+|+|.+|.++|..|++.|++|++.|.+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            5799999999999999999999999999998754

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.20  E-value=0.15  Score=44.83  Aligned_cols=72  Identities=18%  Similarity=0.280  Sum_probs=53.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|+|- ...|..++..|.+.|..|++.+.+...++                                     +.+++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~   71 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD   71 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            58999998 66699999999999999999986432221                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||-++....-++.+       .+++++++.+...
T Consensus        72 ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~  101 (140)
T cd05212          72 ADVVVVGSPKPEKVPTE-------WIKPGATVINCSP  101 (140)
T ss_pred             CCEEEEecCCCCccCHH-------HcCCCCEEEEcCC
Confidence            99999999765434433       4788998875443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06753 hypothetical protein; Provisional

Probab=94.19  E-value=0.046  Score=56.14  Aligned_cols=34  Identities=35%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|||+|.-|...|..|+++|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4899999999999999999999999999998875

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.18  E-value=0.11  Score=53.61  Aligned_cols=101  Identities=18%  Similarity=0.281  Sum_probs=60.3

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +.+||+|+|+ |..|..+...|..+ +++|+.+..+.+.-+...    ..... +..+..         ..+. ..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~----~~~~~-l~~~~~---------~~~~-~~~~~~  101 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG----SVFPH-LITQDL---------PNLV-AVKDAD  101 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch----hhCcc-ccCccc---------ccee-cCCHHH
Confidence            4579999999 99999999999988 779999877543311100    00000 000000         0000 111223


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      ++++|+||.|+|..  .-.++...+    ..++.|+++++..-+
T Consensus       102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl  139 (381)
T PLN02968        102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRL  139 (381)
T ss_pred             hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhcc
Confidence            68899999999864  233343433    456888888876544

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.17  E-value=3.1  Score=41.50  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=28.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|+|+|+|-.| .+|..++++ |++|+++|.+...-+++.
T Consensus       183 ~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~  222 (360)
T KOG0023|consen  183 KWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAI  222 (360)
T ss_pred             cEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHH
Confidence            589999997765 455555554 999999999975555443

>PRK07236 hypothetical protein; Provisional

Probab=94.17  E-value=0.05  Score=56.31  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=33.2

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +.++|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            347999999999999999999999999999999864

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.14  E-value=0.054  Score=55.79  Aligned_cols=35  Identities=31%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .++|+|||+|.+|.+.|..|++.|.+|+++|..+-
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            46899999999999999999999999999998763

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.06  E-value=0.16  Score=48.31  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ++|+|.|.|++|+.+|..|...|. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            599999999999999999999988 677788877

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=94.06  E-value=0.34  Score=43.16  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCCcEEE-Ee-CCHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNYPVIL-KE-VNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~~V~l-~d-~~~~~~~~  185 (496)
                      .||+|+|+|.||..++..+.. .+++++. .| .+++.+..
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~   41 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAH   41 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHH
Confidence            389999999999999998875 4666554 56 35555544

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=94.05  E-value=0.052  Score=55.82  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .|.|||+|.+|.++|..|++.|++|+++|...
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999999853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=94.02  E-value=0.21  Score=52.26  Aligned_cols=32  Identities=19%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNY------PVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~------~V~l~d~~~  180 (496)
                      ||.|||+|..|..++..|+..|+      +++++|.+.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~   38 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence            58999999999999999999998      899999864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK06847 hypothetical protein; Provisional

Probab=94.00  E-value=0.055  Score=55.57  Aligned_cols=35  Identities=43%  Similarity=0.545  Sum_probs=32.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +++|+|||+|.-|...|..|++.|++|+++|++++
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            56899999999999999999999999999998764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.97  E-value=0.13  Score=52.67  Aligned_cols=100  Identities=21%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCccc
Q 010966          148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES  223 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~  223 (496)
                      +||+|||+ |.+|..++..|..+ +++++ +++.+...-+...    ..+      +.+..     . ...... .+.++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~------~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVH------PHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhC------ccccc-----c-CCceeecCCHHH
Confidence            48999999 99999999999976 67877 5565543211110    000      10000     0 001111 12233


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~  268 (496)
                      + .++|+||.|+|....  .++..++   ...++.|+++++...++
T Consensus        65 ~~~~~DvVf~alP~~~s--~~~~~~~---~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        65 IAEDADVVFLALPHGVS--AELAPEL---LAAGVKVIDLSADFRLK  105 (346)
T ss_pred             hhcCCCEEEECCCchHH--HHHHHHH---HhCCCEEEeCChhhhcC
Confidence            3 589999999997632  3333333   24578888888876543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.97  E-value=0.35  Score=50.82  Aligned_cols=36  Identities=28%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      .+||.|+|+|.-|.++|..|.+.|++|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            579999999999999999999999999999987765

>PRK14852 hypothetical protein; Provisional

Probab=93.96  E-value=0.066  Score=60.85  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||+|||+|-.|+.++..|+..|+ +++++|-+.
T Consensus       333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~  366 (989)
T PRK14852        333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA  366 (989)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            589999999999999999999998 789988764

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.96  E-value=1.4  Score=43.80  Aligned_cols=40  Identities=23%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      ..|+|.|+|.+|.+.+.....+|- +++.+|+|+++.+.+.
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak  234 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK  234 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence            579999999999999999998886 8999999999988765

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=93.93  E-value=0.057  Score=56.05  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~  180 (496)
                      ..|.|||+|.+|.++|..|++.  |++|+++|+.+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            4799999999999999999998  99999999874

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.89  E-value=0.48  Score=47.51  Aligned_cols=147  Identities=23%  Similarity=0.302  Sum_probs=78.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      .+|+|+|+ |..|.-+...|....++   +.++-.....=+...+        .  .+.        ...-.....+..+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f--~~~--------~~~v~~~~~~~~~   63 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------F--GGK--------SIGVPEDAADEFV   63 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------c--cCc--------cccCccccccccc
Confidence            58999988 99999999999987553   3343333221111000        0  000        0000011134456


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeE---EEEeC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL---EIVRT  300 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lv---eiv~~  300 (496)
                      .+++|+|+.|.+.+..  +++..++.   ..++++++|+|...++.        +--+-+-..||-+....-   -|+.+
T Consensus        64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCC--------CCCEecCCcCHHHHHhhhhCCCEEEC
Confidence            7899999999986643  44444443   46799999999775432        111111122322211000   35555


Q ss_pred             CCCC-HHHHHHHHHHHHHcCCceEEe
Q 010966          301 NQTS-PQVIVDLLDIGKKIKKTPIVV  325 (496)
Q Consensus       301 ~~t~-~e~~~~~~~l~~~lGk~~v~v  325 (496)
                      +.++ ...+-.+..+.+..|-.-+.+
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~V  156 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVVV  156 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEEE
Confidence            5543 344555666777666544444

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.86  E-value=0.22  Score=48.14  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=34.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++|.|+|+ |.+|..++..|+.+|++|++.+++++..+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            58999987 9999999999999999999999998766543

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.85  E-value=0.042  Score=59.59  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|..|+.+|..|+..|+ +++++|.+.
T Consensus       339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~  372 (664)
T TIGR01381       339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK  372 (664)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            589999999999999999999998 799999753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.85  E-value=0.054  Score=60.39  Aligned_cols=33  Identities=39%  Similarity=0.689  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999874

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.80  E-value=0.066  Score=55.69  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|-.|+.+|..|+..|+ +++++|.+.
T Consensus        43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            489999999999999999999998 799999764

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.76  E-value=0.39  Score=48.87  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHh
Q 010966          148 KKVAILGGGLMGSGIATALIL  168 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~  168 (496)
                      .+|+|+|.|++|++++..+..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            589999999999999998876

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.73  E-value=0.4  Score=50.92  Aligned_cols=130  Identities=19%  Similarity=0.298  Sum_probs=80.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ++|.|||+|.++..=+..|...|.+|+++...  ++- ..           ..+.|.++-         +.-.-..++++
T Consensus        13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~~-----------l~~~~~i~~---------~~~~~~~~dl~   71 (457)
T PRK10637         13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-TA-----------WADAGMLTL---------VEGPFDESLLD   71 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-HH-----------HHhCCCEEE---------EeCCCChHHhC
Confidence            68999999999999999999999999998543  321 11           122332210         00011234688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT  303 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t  303 (496)
                      ++++||-|+ +|.++.+.+.+.    +....+++.+..            .|+   ..+|+.|.  ...+++--+...+.
T Consensus        72 ~~~lv~~at-~d~~~n~~i~~~----a~~~~~lvN~~d------------~~~---~~~f~~pa~~~~g~l~iaisT~G~  131 (457)
T PRK10637         72 TCWLAIAAT-DDDAVNQRVSEA----AEARRIFCNVVD------------APK---AASFIMPSIIDRSPLMVAVSSGGT  131 (457)
T ss_pred             CCEEEEECC-CCHHHhHHHHHH----HHHcCcEEEECC------------Ccc---cCeEEEeeEEecCCEEEEEECCCC
Confidence            999998886 455555555444    333344443221            121   12466664  45677777777788


Q ss_pred             CHHHHHHHHHHHHHc
Q 010966          304 SPQVIVDLLDIGKKI  318 (496)
Q Consensus       304 ~~e~~~~~~~l~~~l  318 (496)
                      +|.....+++-++.+
T Consensus       132 sP~~a~~lr~~ie~~  146 (457)
T PRK10637        132 SPVLARLLREKLESL  146 (457)
T ss_pred             CcHHHHHHHHHHHHh
Confidence            888888777766654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.70  E-value=0.063  Score=55.51  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            4799999999999999999999999999999753

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=93.67  E-value=0.55  Score=45.44  Aligned_cols=126  Identities=14%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-----------cEEEEeCCH----HH--HHHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-----------PVILKEVNE----KF--LEAGIGRVRANLQSRVKKGKMTQEKFEK  210 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-----------~V~l~d~~~----~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~  210 (496)
                      .||.|.|+|.-|.+||..+...+.           +++++|..-    ++  +....    +.+....+           
T Consensus        26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~----~~~~~~~~-----------   90 (254)
T cd00762          26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNE----YHLARFAN-----------   90 (254)
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHH----HHHHHHcC-----------
Confidence            589999999999999998887654           688888752    10  11100    00000000           


Q ss_pred             hhcceecccCc-cccc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe-ccCC---cccHHHHHhhhcCCCeeeec
Q 010966          211 TISLLTGVLDY-ESFK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTS---TIDLNLIGERTYSKDRIVGA  283 (496)
Q Consensus       211 ~~~~i~~~~~~-~~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS---~~~~~~la~~~~~~~r~ig~  283 (496)
                         .-....++ +.++  +.|++|=+-.-.-.+.+++++.+.+++..-.|++ ||-.   -++.++..+...-..-|...
T Consensus        91 ---~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG  167 (254)
T cd00762          91 ---PERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG  167 (254)
T ss_pred             ---cccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC
Confidence               00112344 4466  7888885432122467788888888877666765 6644   35667766655322234444


Q ss_pred             cccCcCCC
Q 010966          284 HFFSPAHV  291 (496)
Q Consensus       284 hf~~P~~~  291 (496)
                      .+|.|+..
T Consensus       168 spf~pv~~  175 (254)
T cd00762         168 SPFHPVEL  175 (254)
T ss_pred             CCCCCccc
Confidence            56666643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=93.65  E-value=0.07  Score=55.63  Aligned_cols=35  Identities=37%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +++|.|||+|..|...|..|++.|++|+++|..+.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~   36 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV   36 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            46899999999999999999999999999996443

>PRK07588 hypothetical protein; Provisional

Probab=93.62  E-value=0.065  Score=55.53  Aligned_cols=34  Identities=32%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|||+|..|.+.|..|++.|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            4799999999999999999999999999998764

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.59  E-value=0.31  Score=48.25  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=52.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      .||+|||+|.||...+..+.+ .+.++. ++|++++.......         .+.|.            -...++++. +
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi------------~~~~~~~e~ll   60 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGV------------KTSAEGVDGLL   60 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCC------------CEEECCHHHHh
Confidence            389999999999988776664 456654 67888875321110         11221            112233433 2


Q ss_pred             --cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                        .+.|+|++|.|.....  +.   ....+..++.+.++++
T Consensus        61 ~~~dIDaV~iaTp~~~H~--e~---a~~al~aGk~VIdekP   96 (285)
T TIGR03215        61 ANPDIDIVFDATSAKAHA--RH---ARLLAELGKIVIDLTP   96 (285)
T ss_pred             cCCCCCEEEECCCcHHHH--HH---HHHHHHcCCEEEECCc
Confidence              4689999999977542  22   2223345665555543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=93.55  E-value=0.069  Score=55.36  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=31.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..+|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            3579999999999999999999999999999875

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.51  E-value=0.089  Score=53.51  Aligned_cols=143  Identities=19%  Similarity=0.202  Sum_probs=76.8

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCcc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPV---ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYE  222 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~  222 (496)
                      +||+|||+ |..|..+...|+.+||++   ..+..+.+.-+...      +     .|           ..+... .+..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~------~-----~g-----------~~i~v~d~~~~   59 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS------F-----KG-----------KELKVEDLTTF   59 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee------e-----CC-----------ceeEEeeCCHH
Confidence            58999998 999999999999988864   55544432211100      0     01           012211 1123


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCe--EEEEeC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL--LEIVRT  300 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~l--veiv~~  300 (496)
                      .++++|+||+|+|...  -+++..++   +..+++|++++|....+. .    .|   .++--.|+-.....  -.++..
T Consensus        60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan  126 (334)
T PRK14874         60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN  126 (334)
T ss_pred             HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence            4578999999998553  33444433   345778888887654332 0    11   23322333221110  026677


Q ss_pred             CCCCHHHHHH-HHHHHHHcCCceEEe
Q 010966          301 NQTSPQVIVD-LLDIGKKIKKTPIVV  325 (496)
Q Consensus       301 ~~t~~e~~~~-~~~l~~~lGk~~v~v  325 (496)
                      +.+..-.+.. +..+.+..+-..+.+
T Consensus       127 p~C~~t~~~l~l~pL~~~~~i~~i~v  152 (334)
T PRK14874        127 PNCSTIQMVVALKPLHDAAGIKRVVV  152 (334)
T ss_pred             ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence            6665554443 445555555444444

>PRK07538 hypothetical protein; Provisional

Probab=93.50  E-value=0.07  Score=55.81  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|||+|.-|...|..|+++|++|+++|++++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            4799999999999999999999999999999874

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=93.49  E-value=0.22  Score=50.02  Aligned_cols=87  Identities=24%  Similarity=0.206  Sum_probs=58.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +++.|.|.|-.|.++|..+...|.+|++++++|=.+-++                        .++-....+-.++.+.+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence            568888999999999999999999999999999543221                        12223333334567788


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      |++|.+.-..--+.    .+-...+++++|++ |..
T Consensus       266 DifiT~TGnkdVi~----~eh~~~MkDgaIl~-N~G  296 (420)
T COG0499         266 DIFVTATGNKDVIR----KEHFEKMKDGAILA-NAG  296 (420)
T ss_pred             CEEEEccCCcCccC----HHHHHhccCCeEEe-ccc
Confidence            99999875432222    22223467888775 544

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.47  E-value=0.22  Score=48.88  Aligned_cols=71  Identities=15%  Similarity=0.258  Sum_probs=53.4

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||-+ ..|..+|..+...|..|+....+...+..                                     .+++
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~-------------------------------------~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA-------------------------------------ELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH-------------------------------------HHhh
Confidence            589999998 88999999999999999999876543222                                     2568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ||+||-|++-..-++.+       .+++++++++..
T Consensus       196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVg  224 (279)
T PRK14178        196 ADILVSAAGKAGFITPD-------MVKPGATVIDVG  224 (279)
T ss_pred             CCEEEECCCcccccCHH-------HcCCCcEEEEee
Confidence            99999999633222222       358999887654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=93.44  E-value=0.079  Score=54.27  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=30.0

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .|.|||+|.+|.++|..|++.|++|+++|...
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK14851 hypothetical protein; Provisional

Probab=93.39  E-value=0.14  Score=56.86  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||+|||+|-.|+.++..|++.|+ +++++|.+.
T Consensus        44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~   77 (679)
T PRK14851         44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ   77 (679)
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence            489999999999999999999998 799988764

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=93.35  E-value=0.93  Score=41.86  Aligned_cols=41  Identities=29%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             ceEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      +.|++++ |+ --+|.+|++.|+++|++|.+.|++.+.++...
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata   55 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA   55 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence            3466655 54 45899999999999999999999988766544

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=93.29  E-value=0.08  Score=55.38  Aligned_cols=33  Identities=42%  Similarity=0.627  Sum_probs=30.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +|+|||+|..|...|..|++.|++|++++..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            799999999999999999999999999997665

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.28  E-value=0.084  Score=54.61  Aligned_cols=33  Identities=39%  Similarity=0.519  Sum_probs=30.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC---CCcEEEEeCC
Q 010966          147 VKKVAILGGGLMGSGIATALILS---NYPVILKEVN  179 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~---G~~V~l~d~~  179 (496)
                      ..+|.|||+|..|..+|..|+++   |++|+++|+.
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            35799999999999999999998   9999999994

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.26  E-value=0.15  Score=51.64  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILS-N-YPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~  186 (496)
                      ++|.|+|+ |.||+.++..|+.+ | .+|++++++++.+...
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L  197 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL  197 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence            58999999 89999999999854 5 5899999998876553

>PRK06475 salicylate hydroxylase; Provisional

Probab=93.21  E-value=0.076  Score=55.28  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||.|||+|.-|...|..|+++|++|+++++.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            5899999999999999999999999999998764

>PRK07045 putative monooxygenase; Reviewed

Probab=93.20  E-value=0.1  Score=54.05  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ..+|.|||+|..|...|..|+++|++|+++|+.++.
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            358999999999999999999999999999988753

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=93.19  E-value=0.093  Score=54.52  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|...|..|+++|++|+++|+.++
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.19  E-value=0.23  Score=48.98  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||-|. .|.++|..|...|..|++.+.....+.                                     +.+++
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  202 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN  202 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence            6899999987 899999999999999999875422111                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ||+||.++.-.--++.       ..++++++++..
T Consensus       203 ADIvi~avG~p~~v~~-------~~vk~gavVIDv  230 (285)
T PRK10792        203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDV  230 (285)
T ss_pred             CCEEEEcCCCcccccH-------HHcCCCcEEEEc
Confidence            9999999942221222       467889988754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=93.15  E-value=0.091  Score=54.50  Aligned_cols=34  Identities=35%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .++|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~   35 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP   35 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence            3579999999999999999999999999999983

>PRK08013 oxidoreductase; Provisional

Probab=93.14  E-value=0.078  Score=55.21  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4799999999999999999999999999998865

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=93.05  E-value=0.47  Score=46.58  Aligned_cols=124  Identities=17%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC----CC-------cEEEEeCCH----HH--HHHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 010966          148 KKVAILGGGLMGSGIATALILS----NY-------PVILKEVNE----KF--LEAGIGRVRANLQSRVKKGKMTQEKFEK  210 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~----G~-------~V~l~d~~~----~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~  210 (496)
                      .||.|+|+|.-|.+||..+...    |.       +++++|++-    ++  +....    ..|.   +..         
T Consensus        26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~----~~~a---~~~---------   89 (279)
T cd05312          26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFK----KPFA---RKD---------   89 (279)
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHH----HHHH---hhc---------
Confidence            5899999999999999988876    87       899999862    10  11111    1111   110         


Q ss_pred             hhcceecccCc-cccc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe-ccCCc---ccHHHHHhhhcCCCeeeec
Q 010966          211 TISLLTGVLDY-ESFK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTST---IDLNLIGERTYSKDRIVGA  283 (496)
Q Consensus       211 ~~~~i~~~~~~-~~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS~---~~~~~la~~~~~~~r~ig~  283 (496)
                        +. ....++ +.++  ++|++|=+-...-.+++++++...+++..-.|++ ||-+.   +..++..+...-..-|...
T Consensus        90 --~~-~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG  166 (279)
T cd05312          90 --EE-KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG  166 (279)
T ss_pred             --Cc-ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC
Confidence              00 012344 4466  7888886432222467788888888877766775 67543   5666766654322223334


Q ss_pred             cccCcCC
Q 010966          284 HFFSPAH  290 (496)
Q Consensus       284 hf~~P~~  290 (496)
                      .||.|+.
T Consensus       167 sPf~pv~  173 (279)
T cd05312         167 SPFPPVE  173 (279)
T ss_pred             CCCCCee
Confidence            6777764

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.03  E-value=0.097  Score=53.98  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      |.+|.|||+|..|.+.|..|++.|++|+++|..
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            357999999999999999999999999999975

>PRK07102 short chain dehydrogenase; Provisional

Probab=93.02  E-value=0.24  Score=47.37  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      |++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~   42 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA   42 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            357889986 99999999999999999999999988765543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=92.99  E-value=0.23  Score=48.17  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      |+|.|.|+ |.+|.++|..|+..|++|++.+++++.++...+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE   43 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            47888887 8899999999999999999999998877665443

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.91  E-value=0.79  Score=45.38  Aligned_cols=33  Identities=36%  Similarity=0.470  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|+|+|-+|..+|..|+.+|. +|+++|.+.
T Consensus        20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            489999999999999999999998 799999765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.87  E-value=1.1  Score=47.51  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||+|+|.|..|.++|..|...|++|+++|.++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            5899999999999999999999999999998753

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=92.83  E-value=0.092  Score=53.96  Aligned_cols=32  Identities=34%  Similarity=0.573  Sum_probs=30.6

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            89999999999999999999999999999875

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.80  E-value=0.26  Score=48.57  Aligned_cols=72  Identities=19%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||-+. .|.++|..|...|..|++.+.....+.                                     +.+++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  207 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD  207 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence            6899999987 899999999999999999884322111                                     22578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||.|+--.--++.       ..++++++++...+
T Consensus       208 ADIvv~AvG~p~~i~~-------~~vk~gavVIDvGi  237 (287)
T PRK14176        208 ADILVVATGVKHLIKA-------DMVKEGAVIFDVGI  237 (287)
T ss_pred             CCEEEEccCCccccCH-------HHcCCCcEEEEecc
Confidence            9999998743221222       25788998876543

>PRK06940 short chain dehydrogenase; Provisional

Probab=92.75  E-value=0.23  Score=48.84  Aligned_cols=39  Identities=33%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      +.|.|+|-+|..+|..|+ .|++|++.+++++.++...+.
T Consensus         5 ~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~   43 (275)
T PRK06940          5 VVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKT   43 (275)
T ss_pred             EEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHH
Confidence            456688999999999996 899999999998776654433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.72  E-value=0.092  Score=54.79  Aligned_cols=34  Identities=38%  Similarity=0.521  Sum_probs=31.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|.-|..+|..|+++|++|+++|+.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            5799999999999999999999999999998764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=92.72  E-value=0.11  Score=53.71  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=30.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+|.|||+|.-|.+.|..|++.|++|+++|..+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            479999999999999999999999999999764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=92.65  E-value=0.099  Score=53.85  Aligned_cols=32  Identities=41%  Similarity=0.556  Sum_probs=30.2

Q ss_pred             EEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHH
Q 010966          150 VAILGGGLMGSGIATALILSN-YPVILKEVNEK  181 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~  181 (496)
                      |.|||+|..|...|..|+++| ++|+++|+.+.
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            899999999999999999999 99999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06196 oxidoreductase; Provisional

Probab=92.64  E-value=0.25  Score=49.54  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|.|+ |-+|..++..|+..|++|++.+++++.++....
T Consensus        27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~   68 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA   68 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46888887 899999999999999999999999887665543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=92.61  E-value=0.099  Score=54.46  Aligned_cols=32  Identities=34%  Similarity=0.499  Sum_probs=30.5

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .|.|||+|..|.++|..|+++|++|+++|..+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            69999999999999999999999999999876

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=92.59  E-value=0.12  Score=56.16  Aligned_cols=33  Identities=39%  Similarity=0.617  Sum_probs=30.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|.|||+|.+|.++|..|++.|++|+++|.+.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            479999999999999999999999999999853

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=92.59  E-value=0.35  Score=44.19  Aligned_cols=39  Identities=18%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             ccceEEEEEeCChhhHHHHH-HHH-hCCCc-EEEEeCCHHHH
Q 010966          145 RRVKKVAILGGGLMGSGIAT-ALI-LSNYP-VILKEVNEKFL  183 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~-~la-~~G~~-V~l~d~~~~~~  183 (496)
                      ..+.+|.+||+|++|.+++. .+. ++|++ |-++|.+++.+
T Consensus        82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V  123 (211)
T COG2344          82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV  123 (211)
T ss_pred             CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh
Confidence            45789999999999999995 344 56775 66789999854

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.58  E-value=0.28  Score=46.96  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|+|+ |.+|..++..|+..|++|++.+++++..+...
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~   46 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA   46 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            58999987 99999999999999999999999997765543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.58  E-value=0.16  Score=50.76  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=31.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ++|.|+|+ |.+|+.++..|++.|++|++++++++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD   36 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence            47899986 999999999999999999999998764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.54  E-value=0.32  Score=46.19  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=35.0

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .++|.|.|+ |.+|..++..|+++|++|++++++++..+..
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            368999987 9999999999999999999999998766543

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=92.54  E-value=0.46  Score=44.04  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=57.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc--cC----
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD----  220 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~----  220 (496)
                      ++|.|||- ...|.++|..|.+.|..|++.|.+--..-.             +.+.+          +-+.+  .+    
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~  119 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM  119 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence            68999998 456999999999999999999876432210             00000          00001  12    


Q ss_pred             c-ccccCCCEEEEeccCChH-HHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       221 ~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      + +.++.||+||-|++..-- ++.+       .+++++++++.....
T Consensus       120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~~  159 (197)
T cd01079         120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASIK  159 (197)
T ss_pred             HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCCc
Confidence            2 347899999999975432 3333       467899987765443

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.53  E-value=3.4  Score=41.56  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|+|+|+|-+|.+-.+....+|- .++.+|+++++++.++
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~  227 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK  227 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence            479999999999999999988886 7999999999988765

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.52  E-value=0.78  Score=48.52  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .++|.|+|.|..|.++|..|+..|++|+++|.++.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            35899999999999999999999999999998764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=92.52  E-value=0.94  Score=37.44  Aligned_cols=95  Identities=20%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCc---
Q 010966          148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY---  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  221 (496)
                      .+|.-||+|.=..  +..+++  .|.+|+.+|.+++.++.+.+++.       +.+         ...++++. .|.   
T Consensus         3 ~~vLDlGcG~G~~--~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~   64 (112)
T PF12847_consen    3 GRVLDLGCGTGRL--SIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD   64 (112)
T ss_dssp             CEEEEETTTTSHH--HHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred             CEEEEEcCcCCHH--HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence            4788999987333  333444  89999999999999998876541       111         11233322 222   


Q ss_pred             -ccccCCCEEEEec-----cCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          222 -ESFKDVDMVIEAI-----IENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       222 -~~~~~aDlVIeav-----~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                       +.....|+|+..-     .-..+..+.+++.+.+.++|+..++.
T Consensus        65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence             2345689888765     11224567788999999988876653

...

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.48  E-value=0.3  Score=49.95  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=60.2

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc
Q 010966          147 VKKVAILG-GGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (496)
                      +.||+|+| .|.+|..+...+..+.. +++++..+++...+-...+   +. ....|.+..     ....+.. ..+.+.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~---~~-~~~~~~~~~-----~~~~~~v~~~~~~~   73 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEA---VR-WQLDGPIPE-----EVADMEVVSTDPEA   73 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccccc---cc-ccccccccc-----cccceEEEeCCHHH
Confidence            47999998 69999999999987654 8888866654432211100   00 000000000     0011112 123455


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      +.++|+|+.|+|.+..  .++...+.   ..++.++++++....
T Consensus        74 ~~~~DvVf~a~p~~~s--~~~~~~~~---~~G~~vIDls~~fR~  112 (349)
T PRK08664         74 VDDVDIVFSALPSDVA--GEVEEEFA---KAGKPVFSNASAHRM  112 (349)
T ss_pred             hcCCCEEEEeCChhHH--HHHHHHHH---HCCCEEEECCchhcC
Confidence            6789999999997643  33333332   356767777776533

>PRK08267 short chain dehydrogenase; Provisional

Probab=92.47  E-value=0.27  Score=47.54  Aligned_cols=40  Identities=25%  Similarity=0.245  Sum_probs=35.0

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      |++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   41 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL   41 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            357889986 9999999999999999999999998876654

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.45  E-value=0.22  Score=48.32  Aligned_cols=41  Identities=17%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      +.+.|.|+ |.+|..++..|+..|++|++.+++++.++...+
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEA   50 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            35777777 789999999999999999999999987766543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.39  E-value=0.59  Score=46.55  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +.|.|||+|.-|+--|..++++|++|.+++..+.+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            47999999999999999999999999999987754

>PRK06185 hypothetical protein; Provisional

Probab=92.28  E-value=0.14  Score=53.27  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ..|.|||+|..|.+.|..|+++|++|+++|.++.
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4799999999999999999999999999998753

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=92.26  E-value=0.14  Score=53.38  Aligned_cols=33  Identities=30%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~  180 (496)
                      ..|.|||+|.+|.++|..|++. |. +|+++|++.
T Consensus        31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            4799999999999999999985 95 999999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.26  E-value=0.34  Score=44.01  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      -.+|.|+|+|..|.+.+..+..-|++|+.+|.+++.++..
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~   59 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL   59 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence            3699999999999999999999999999999999877653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.25  E-value=0.3  Score=51.93  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~~G~~V~l~d~~~~  181 (496)
                      .++|.|||.|..|.+ +|..|.+.|++|+++|.++.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            468999999999999 79999999999999998754

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.24  E-value=0.33  Score=46.12  Aligned_cols=40  Identities=35%  Similarity=0.449  Sum_probs=34.8

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|+|+ |.+|..++..|+..|++|++.+++++.++...
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA   47 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence            57889986 99999999999999999999999987766543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=92.24  E-value=0.19  Score=53.30  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=33.5

Q ss_pred             cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       144 ~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +.+...|.|||+|.-|+..|..|+++|++|+++|+.+.
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            34456899999999999999999999999999998753

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=92.24  E-value=0.14  Score=53.03  Aligned_cols=33  Identities=30%  Similarity=0.603  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+|.|||+|..|.+.|..|+++|++|+++|..+
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            579999999999999999999999999999875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.23  E-value=0.66  Score=46.37  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~  185 (496)
                      .+|.|+|+|.+|...++.+...|.+ |++.|.++++++.
T Consensus       146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~  184 (308)
T TIGR01202       146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDG  184 (308)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHh
Confidence            3689999999999988888788986 6677888877654

>PLN02985 squalene monooxygenase

Probab=92.20  E-value=0.19  Score=54.26  Aligned_cols=34  Identities=32%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            4589999999999999999999999999999975

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=92.14  E-value=0.36  Score=48.07  Aligned_cols=100  Identities=17%  Similarity=0.090  Sum_probs=68.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++++|||.|.+|+-.|.++-.-|..|+.+|.- +.....+             .|             +...+-.|.+..
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~g-------------vq~vsl~Eil~~  200 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------FG-------------VQLVSLEEILPK  200 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------cc-------------ceeeeHHHHHhh
Confidence            68999999999999999999899999999864 3322221             12             112222345788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERT  274 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~  274 (496)
                      ||+|-.=+|-.++.++-+-.+-...++++.-|+ |+|   -+....+-..+
T Consensus       201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al  250 (406)
T KOG0068|consen  201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRAL  250 (406)
T ss_pred             cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHH
Confidence            999999888877777666666666778887554 333   34555555555

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.11  E-value=3.7  Score=42.20  Aligned_cols=176  Identities=13%  Similarity=0.072  Sum_probs=99.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc---cCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV---LDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~  222 (496)
                      |.+|-|+|+|..+-.+|..|-+.+. +|-++.|...+.+...+.+.+.- ..+ ...+..+.....-+.....   .+++
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~-~~~-~v~vqn~~h~~l~G~~~id~~~~~~~   78 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSD-GLF-EVSVQNEQHQALSGECTIDHVFQDYE   78 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCC-CEE-EEeecchhhhhhcCeEEhhHhhcCHH
Confidence            5689999999999999999988765 79999997666555443332210 000 0011111122222222222   2344


Q ss_pred             cc-cCCCEEEEeccCChHHHHHHHHHHHhhCC---CCeeEeccC--CcccHHHHHhhhcCCCeeeecc-------cc--C
Q 010966          223 SF-KDVDMVIEAIIENVSLKQQIFADLEKYCP---PHCILASNT--STIDLNLIGERTYSKDRIVGAH-------FF--S  287 (496)
Q Consensus       223 ~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~---~~~il~snt--S~~~~~~la~~~~~~~r~ig~h-------f~--~  287 (496)
                      .+ .+=|.+|.|+|.|.  -..|+++|....-   ...|++|-|  |.+-+..+.........++...       |.  .
T Consensus        79 ~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~  156 (429)
T PF10100_consen   79 EIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE  156 (429)
T ss_pred             HhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence            43 45699999999875  3466666543221   233555543  4455565555554333333322       11  1


Q ss_pred             cCC-C----CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          288 PAH-V----MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       288 P~~-~----~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      |++ .    .+---.+.+...+...+..+..+++.+|-....+.
T Consensus       157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~  200 (429)
T PF10100_consen  157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD  200 (429)
T ss_pred             CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence            221 1    01111445556677788999999999999888875

>PRK11579 putative oxidoreductase; Provisional

Probab=92.10  E-value=0.5  Score=48.23  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=44.2

Q ss_pred             eEEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      .||+|||+|.||.. .+..+.. .+++++ ++|++++++..             +.+            .....+|+++ 
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~el   59 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVSEPQHL   59 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeCCHHHH
Confidence            58999999999985 4555554 367764 78998765321             001            1123456654 


Q ss_pred             c--cCCCEEEEeccCChHH
Q 010966          224 F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       224 ~--~~aDlVIeav~e~~~~  240 (496)
                      +  .+.|+|+.|+|.....
T Consensus        60 l~~~~vD~V~I~tp~~~H~   78 (346)
T PRK11579         60 FNDPNIDLIVIPTPNDTHF   78 (346)
T ss_pred             hcCCCCCEEEEcCCcHHHH
Confidence            3  3689999999976543

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=92.06  E-value=0.49  Score=54.89  Aligned_cols=162  Identities=13%  Similarity=0.038  Sum_probs=81.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHhh---------
Q 010966          148 KKVAILGGGLMGSGIATALILSNY------PVILKEVNEKFLEAGIGRVRANL-QSRVKKGKMTQEKFEKT---------  211 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~~---------  211 (496)
                      .||.|||+|..|+.++..|+..|+      +++++|.+.=.....    ++++ -+.-.-|+.....+...         
T Consensus       420 ~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL----nRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~  495 (1008)
T TIGR01408       420 LNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL----NRQFLFRPHHIGKPKSYTAADATLKINPQIK  495 (1008)
T ss_pred             CcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc----CcCcCCChhHcCcHHHHHHHHHHHHHCCCCE
Confidence            479999999999999999999998      899999764211110    0000 00000011100000100         


Q ss_pred             ----hcceeccc-Cc---ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe-ccCCcccHHHHHhhhcCCCeeee
Q 010966          212 ----ISLLTGVL-DY---ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTSTIDLNLIGERTYSKDRIVG  282 (496)
Q Consensus       212 ----~~~i~~~~-~~---~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS~~~~~~la~~~~~~~r~ig  282 (496)
                          ..++...+ +.   +-+++.|+||.|+- +.+.+.-+-.....   .+..++ +.+.+..- ...-..++-....+
T Consensus       496 I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alD-n~~aR~~vn~~c~~---~~iPli~~gt~G~~G-~v~v~ip~~te~y~  570 (1008)
T TIGR01408       496 IDAHQNRVGPETETIFNDEFYEKLDVVINALD-NVEARRYVDSRCLA---FLKPLLESGTLGTKG-NTQVVVPHLTESYG  570 (1008)
T ss_pred             EEEEEeecChhhhhhhhHHHhhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEeccCcee-eEEEEeCCCcCCCC
Confidence                01111101 11   12478999999873 44444322222222   233333 33322211 11111111111233


Q ss_pred             ccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 010966          283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKI  318 (496)
Q Consensus       283 ~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~l  318 (496)
                      .|+..|....|..++-..|..-..+++.++++++.+
T Consensus       571 ~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~  606 (1008)
T TIGR01408       571 SSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGL  606 (1008)
T ss_pred             CCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHH
Confidence            343333334688888888888899999999988763

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=92.06  E-value=0.13  Score=55.58  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=28.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||+|||+|.-|...++.|...|++|++++++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            6899999999999999999999999999998764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=92.05  E-value=0.15  Score=53.39  Aligned_cols=34  Identities=35%  Similarity=0.492  Sum_probs=31.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~  181 (496)
                      +||+|||+|.-|.+.|..|+++| ++|++++++++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            48999999999999999999998 59999999865

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		0.0
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		7e-58
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-55
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-55
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		2e-55
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		2e-46
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		1e-42
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		2e-39
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		1e-38
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		1e-38
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		3e-38
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		3e-38
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		3e-38
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		3e-38
3had_A	308	Biochemical Characterization And Structure Determin		5e-38
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		6e-38
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		7e-38
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		2e-29
2hdh_A	293	Biochemical Characterization And Structure Determin		3e-28
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		4e-21
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		1e-17
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		8e-13
3ado_A	319	Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr		3e-11

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/457 (78%), Positives = 412/457 (90%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+ + 
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANL 622

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  221 bits (563), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 219/435 (50%), Gaps = 15/435 (3%)
Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
           + K  + E+A  +  VDAVV  ++L       +  A    LD    R+P +  L K + I
Sbjct: 170 SGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL-KLNAI 228
Query: 57  EPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
           E +        F   QA    PN   P+  I  ++     G    L+ EA  F KL ++ 
Sbjct: 229 EQMMAFETAKGFVAGQA---GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTS 285
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
               L+ +F   +   K   V D     + VK+ A+LG G+MG GIA        P+++K
Sbjct: 286 ASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMK 343
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
           ++NE  +E G+      L  RV KG+MT  K  + ++ +   L Y  F +VD+V+EA++E
Sbjct: 344 DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVE 403
Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
           N  +KQ + A++E +     ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+E
Sbjct: 404 NPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVE 463
Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
           ++R  ++S   +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G D   
Sbjct: 464 VIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVR 523
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGE 414
           ID+ + KFG PMGP  L D+VG            E FP+R    +   I  + E KR G+
Sbjct: 524 IDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQ 583
Query: 415 TTRKGFYLYDERRKA 429
              KGFY Y+  +K 
Sbjct: 584 KNGKGFYAYEADKKG 598

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 229/464 (49%), Gaps = 21/464 (4%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           ++ + K +  +EA  LG++DAVV  +  V  A ++A  I++  +P          +  L 
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 226
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
               +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S   K+
Sbjct: 227 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 286
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
           L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+  E
Sbjct: 287 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
            + K L+A    +   L+    +     +   K     +     +    VD+V+EA+ E+
Sbjct: 347 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--STKELSTVDLVVEAVFED 404
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
           ++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM LLE+
Sbjct: 405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 464
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
           + +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+    +
Sbjct: 465 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDV 524
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMIIPIM 406
           D  + +FG  MGPFR++DL G  V          TG       P R    +  S +  ++
Sbjct: 525 DGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDML 584
Query: 407 QEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGV 448
            E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +
Sbjct: 585 CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI 628

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 229/464 (49%), Gaps = 21/464 (4%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           ++ + K +  +EA  LG++DAVV  +  V  A ++A  I++  +P          +  L 
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 226
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
               +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S   K+
Sbjct: 227 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 286
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
           L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+  E
Sbjct: 287 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
            + K L+A    +   L+    +     +   K     +     +    VD+V+EA+ E+
Sbjct: 347 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--STKELSTVDLVVEAVFED 404
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
           ++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM LLE+
Sbjct: 405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 464
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
           + +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+    +
Sbjct: 465 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDV 524
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMIIPIM 406
           D  + +FG  MGPFR++DL G  V          TG       P R    +  S +  ++
Sbjct: 525 DGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDML 584
Query: 407 QEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGV 448
            E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +
Sbjct: 585 CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI 628

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 229/464 (49%), Gaps = 21/464 (4%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           ++ + K +  +EA  LG++DAVV  +  V  A ++A  I++  +P          +  L 
Sbjct: 155 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 211
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
               +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S   K+
Sbjct: 212 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 271
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
           L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+  E
Sbjct: 272 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 331
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
            + K L+A    +   L+    +     +   K     +     +    VD+V+EA+ E+
Sbjct: 332 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--STKELSTVDLVVEAVFED 389
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
           ++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM LLE+
Sbjct: 390 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 449
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
           + +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+    +
Sbjct: 450 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDV 509
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMIIPIM 406
           D  + +FG  MGPFR++DL G  V          TG       P R    +  S +  ++
Sbjct: 510 DGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDML 569
Query: 407 QEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGV 448
            E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +
Sbjct: 570 CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI 613

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 177/350 (50%), Gaps = 24/350 (6%)
Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
           S   K+L + FFA++  +K     G +    + + V  V +LG G MG GIA +      
Sbjct: 2   SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61
Query: 172 PVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228
            V+  E + K L+A    +   L+   SR  +      K +   S  T     +    VD
Sbjct: 62  SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-----KELSTVD 116
Query: 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP 288
           +V+EA+ E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSP
Sbjct: 117 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSP 176
Query: 289 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV 348
           AHVM LLE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+
Sbjct: 177 AHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLL 236
Query: 349 ERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----T 397
           E G+    +D  + +FG  MGPFR++DL G  V          TG       P R    +
Sbjct: 237 EEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNS 296
Query: 398 YKSMIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSM 445
             S +  ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +
Sbjct: 297 RYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREV 346

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 171/328 (52%), Gaps = 33/328 (10%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
           V  VAI+GGG MG  +A    L+     L   NE+       R +  L+    + K    
Sbjct: 54  VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ-------RCKQELEVMYAREKSFKR 106
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
           +  ++ EK  + L    D+    + D+++E++IE++ LK+++FA+LE  C   CI  +NT
Sbjct: 107 LNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNT 166
Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
           S++DLN I         +VG HFF+PA+V+ L+EI+  + TS Q I       + IKK P
Sbjct: 167 SSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLP 226
Query: 323 IVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381
           ++VGNC  F  NR+   Y  Q+  L+ E G   + ID+ IT FG  MGP  +AD+ GF V
Sbjct: 227 VLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDV 286
Query: 382 AIATGMQFI--ENFPERTYKSMIIPIMQED---KRAGETTRKGFYLYDER-RKASPDPEV 435
                M+ +  EN  E        PI +E    KR G  T KGFY YD++ ++   D E+
Sbjct: 287 -----MEKLKKENGLEPN------PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEM 335
Query: 436 KKFI----EKARSMSGVAIDPKVLSFFL 459
           ++ I    + A+S   +  D  V++F L
Sbjct: 336 EQIIRRVSQNAKSNIQIINDQDVINFML 363

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 150/287 (52%), Gaps = 4/287 (1%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           V+ VA++G G MG+GIA       + V+L +++ + L   I  + A L SRV +GK+T E
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
             E+T+  L  V D  +    D+VIEA  E + +K+ +FA L + CPP  +L +NTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  I     + +R+ G HFF+PA VM L+E+V    T+ +V+  L ++     K P+   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 327 NCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAIA 384
           +  GF VNR+  PY   A+  L E+     +ID A+    G PMGP  L DL+G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 385 TGMQFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKA 429
                   F +  R   S++   +    R G+ +  G Y +   R+A
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREA 291

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NT+++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI++N+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+++++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 18/291 (6%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S ++   D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  +   T  +DR  G HFF+P  +M L+E+V+T  TS + +  L+D  K + K
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVAIATGMQFIENFPERTYKSMII---PIMQE---DKRAGETTRKGFYLY 423
               + T    I+ + E   ++ +    P M +   + + G+ T +GFY Y
Sbjct: 255 ----LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKY 301

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K    H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  155 bits (391), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NT ++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  155 bits (391), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF V+R+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 126/265 (47%), Gaps = 10/265 (3%)
Query: 169 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 223
           + + V+L +  E  L      +  +L+   KK      K   E  EKT+S +    D  S
Sbjct: 59  TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 118
Query: 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 282
                D+V+EAI+EN+ +K ++F  L+K+   H I ASNTS++ +  I   T  +DR  G
Sbjct: 119 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAG 178
Query: 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 342
            HFF+P  V  L+E+++T  TS +    L+D  K + K P+   +  GF VNR+  PY  
Sbjct: 179 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 238
Query: 343 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 398
            A  L ERG      ID A     G P GPF L D VG      I  G    +       
Sbjct: 239 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 298
Query: 399 KSMIIPIMQEDKRAGETTRKGFYLY 423
            S  +  +  + + G+ T +GFY Y
Sbjct: 299 PSPSLNKLVAENKFGKKTGEGFYKY 323

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 10/265 (3%)
Query: 169 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 223
           + + V+L +  E  L      +  +L+   KK      K   E   KT+S +    D  S
Sbjct: 26  TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATSTDAAS 85
Query: 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 282
                D+V+EAI+EN+ +K ++F  L+K    H I ASNTS++ +  I   T  +DR  G
Sbjct: 86  VVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRFAG 145
Query: 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 342
            HFF+P  V  L+E+++T  TS +    L+D  K + K P+   +  GF VNR+  PY  
Sbjct: 146 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 205
Query: 343 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 398
            A  L ERG      ID A     G P GPF L D VG      I  G    +       
Sbjct: 206 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 265
Query: 399 KSMIIPIMQEDKRAGETTRKGFYLY 423
            S  +  +  + + G+ T +GFY Y
Sbjct: 266 PSPSLNKLVAENKFGKKTGEGFYKY 290

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 35/284 (12%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
           KV ++G GL G GIA A I S + V+L++V+EK LEA   ++   L S+++        F
Sbjct: 14  KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEELLSKIE--------F 64
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
             T+         E  KD D+V EA+ E+++ K ++  ++E+    +  L SNTS I ++
Sbjct: 65  TTTL---------EKVKDCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
            I ER  S  R +G H+ +P HV PL+EIV +  T  + +  +    +++ K  +V   C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 329 TGFA-VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPM-----GPFRLADLVGFGVA 382
            G + VNR        A   +E G     +DR + K  + +     GP    D +G  VA
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDR-VWKHHLGLLYTLFGPLGNLDYIGLDVA 229
Query: 383 IATGMQFIENFPERTYKSMIIPIMQEDKRAGET---TRKGFYLY 423
               +   + F +  +K      +QE  + GE      KG Y Y
Sbjct: 230 YYASLYLYKRFGDEKFKPP--EWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 11/284 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK--GKMT 204
           +  V +LG G++GS IA       + V   ++N   L+A   R    L +  +K      
Sbjct: 4   ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEG-LAAVYEKEVAGAA 62
Query: 205 QEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
               +K +  +    D  ++ KD D+VIEA+ E++ LK+ I+  L +  P   I A+N+S
Sbjct: 63  DGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSS 122
Query: 264 T-IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
           T +  +L+G  T   D+ +  HF +   V    E++ T +T P+V   +++    I   P
Sbjct: 123 TLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVP 181
Query: 323 IVV-GNCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAI-TKFGMPMGPFRLADLVGF 379
           I +     G+ +N +  P   AA  LLV+   D   ID+      G P GPF + D+V  
Sbjct: 182 IELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIV-- 239
Query: 380 GVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
           G+  A  +  +    +R + + +     +  + G  T +GFY Y
Sbjct: 240 GLTTAYNISSVSGPKQREFAAYLKENYIDKGKLGLATGEGFYRY 283

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 9/216 (4%)
Query: 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KF 208
           V I+G G++G   A       + V L ++ ++ +   +  +R  ++   + G +      
Sbjct: 6   VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 209 EKTISLLTGVLDYESFKDVDMVI-EAIIENVSLKQQIFADLEKYCPPHCILASNTSTI-D 266
           E+ +SL++G  + +   +  M I E + E++ LK++IFA L+       IL+S+TS +  
Sbjct: 66  EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VV 325
             L     + K  IV AH  +P + +PL+E+V   +T+P  +     + KKI + P+ V 
Sbjct: 126 SKLFAGLVHVKQCIV-AHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQ 184
Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLI 357
               GF +NR+ +     A+ LVE G    +DL L+
Sbjct: 185 KEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 220

>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 7/215 (3%)
Query: 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KF 208
           V I+G GL+G   A       + V L ++  + +   +  +R  ++S  + G +      
Sbjct: 9   VLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSA 68
Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
           E+ +SL++   +  E+ + V  + E + EN+ LK++IFA L+       +L+S++S +  
Sbjct: 69  EEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VVG 326
           + +        + + AH  +P + +PL+E+V   +TSP  +     + +KI ++P+ V+ 
Sbjct: 129 SKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLK 188
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLI 357
              GF +NR+ +     A+ LVE G    +DL L+
Sbjct: 189 EIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	0.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	0.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	0.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	1e-152
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-144
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	8e-88
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	6e-27
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	2e-85
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	5e-76
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	2e-69
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	8e-12
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	3e-07
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	9e-07
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	9e-07
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-06
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	1e-06
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-06
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	2e-06
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-06
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-06
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	3e-06
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	3e-06
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	3e-06
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	4e-06
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	5e-06
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	5e-06
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	5e-06
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	6e-06
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	6e-06
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	6e-06
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	7e-06
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	7e-06
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	7e-06
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	7e-06
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	7e-06
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	7e-06
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	7e-06
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	8e-06
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	9e-06
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	9e-06
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	9e-06
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	1e-05
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-05
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-05
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	1e-05
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-05
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-05
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	2e-05
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-05
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-05
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	2e-05
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	3e-05
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	3e-05
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	3e-05
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	3e-05
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	3e-05
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-05
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	5e-05
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	6e-05
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	8e-05
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	8e-05
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	9e-05
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	9e-05
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-04
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-04
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	1e-04
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	2e-04
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-04
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	3e-04
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	7e-04

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  600 bits (1548), Expect = 0.0
 Identities = 359/457 (78%), Positives = 412/457 (90%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLSF 457
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+ + 
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANL 622

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  554 bits (1431), Expect = 0.0
 Identities = 146/456 (32%), Positives = 222/456 (48%), Gaps = 11/456 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
            + + K  + E+A  +  VDAVV  ++L + A       +     + A   +  K+E L 
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA--KRQPKLEKLK 224

Query: 61  ----EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
               E    F+ A+     QA PN   P+  I  ++     G    L+ EA  F KL ++
Sbjct: 225 LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284

Query: 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
                L+ +F   +   K   V D     + VK+ A+LG G+MG GIA        P+++
Sbjct: 285 SASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342

Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
           K++NE  +E G+      L  RV KG+MT  K  + ++ +   L Y  F +VD+V+EA++
Sbjct: 343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402

Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
           EN  +KQ + A++E +     ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+
Sbjct: 403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462

Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
           E++R  ++S   +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G D  
Sbjct: 463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522

Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYK--SMIIPIMQEDKRAG 413
            ID+ + KFG PMGP  L D+VG            E FP+R        I  + E KR G
Sbjct: 523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582

Query: 414 ETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVA 449
           +   KGFY Y+  +K      V   + +        
Sbjct: 583 QKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYE 618

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  537 bits (1385), Expect = 0.0
 Identities = 141/468 (30%), Positives = 228/468 (48%), Gaps = 27/468 (5%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQL---VSTARQWALDILEHRRPWVATLYKTDKIE 57
           ++ + K +  +EA  LG++DAVV  + +   +  A++     +E RR +         + 
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIF------NKPVP 223

Query: 58  PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
            L     +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S  
Sbjct: 224 SLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQ 283

Query: 118 CKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVI 174
            K+L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+
Sbjct: 284 AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 343

Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
             E + K L+A    +   L+    +     +        L      +    VD+V+EA+
Sbjct: 344 AVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAV 401

Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
            E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461

Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
           LE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+  
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKSMII 403
             +D  + +FG  MGPFR++DL G  V          TG       P R    +  S + 
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581

Query: 404 PIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVA 449
            ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  + 
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIE 629

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  440 bits (1135), Expect = e-152
 Identities = 112/351 (31%), Positives = 174/351 (49%), Gaps = 18/351 (5%)

Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
           S   K+L + FFA++  +K     G +    + + V  V +LG G MG GIA +      
Sbjct: 2   SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61

Query: 172 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 231
            V+  E + K L+A    +   L+    +     +        L      +    VD+V+
Sbjct: 62  SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVV 119

Query: 232 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291
           EA+ E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHV
Sbjct: 120 EAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHV 179

Query: 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 351
           M LLE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G
Sbjct: 180 MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG 239

Query: 352 TDLYLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKS 400
           +    +D  + +FG  MGPFR++DL G  V          TG       P R    +  S
Sbjct: 240 SKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYS 299

Query: 401 MIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVA 449
            +  ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  + 
Sbjct: 300 PLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIE 350

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  420 bits (1082), Expect = e-144
 Identities = 102/355 (28%), Positives = 163/355 (45%), Gaps = 15/355 (4%)

Query: 101 GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGL----APRRVKKVAILGGG 156
                     + L  +  +   ++  A     +     D G         V  VAI+GGG
Sbjct: 4   HHHHHHHSTGENLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGG 63

Query: 157 LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216
            MG  +A    L+     L   NE+  +  +  +           ++  ++ EK  + L 
Sbjct: 64  TMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEKINANLK 120

Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
              D+    + D+++E++IE++ LK+++FA+LE  C   CI  +NTS++DLN I      
Sbjct: 121 ITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRD 180

Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
              +VG HFF+PA+V+ L+EI+  + TS Q I       + IKK P++VGNC  F  NR+
Sbjct: 181 PSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRL 240

Query: 337 FFPYT-QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 395
              Y  Q+  L+ E G   + ID+ IT FG  MGP  +AD+ GF V      +       
Sbjct: 241 LHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKEN------ 294

Query: 396 RTYKSMIIPIMQEDKRAGETTRKGFYLYDE-RRKASPDPEVKKFIEKARSMSGVA 449
               + I   M   KR G  T KGFY YD+  ++   D E+++ I +    +   
Sbjct: 295 GLEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSN 349

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  276 bits (709), Expect = 8e-88
 Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 12/296 (4%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           V+ VA++G G MG+GIA       + V+L +++ + L   I  + A L SRV +GK+T E
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
             E+T+  L  V D  +    D+VIEA  E + +K+ +FA L + CPP  +L +NTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  I     + +R+ G HFF+PA VM L+E+V    T+ +V+  L ++     K P+   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184

Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGV-- 381
           +  GF VNR+  PY ++A   L E+     +ID A+ + G   PMGP  L DL+G  V  
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAAL-RDGAGFPMGPLELTDLIGQDVNF 243

Query: 382 AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKASPDPE 434
           A+   + F   + ER +      + QE    G   +K   G Y +   R+A    E
Sbjct: 244 AVTCSV-FNAFWQERRFLPS--LVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLE 296

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  112 bits (282), Expect = 6e-27
 Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 26/218 (11%)

Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
           GV D+ + ++  + +EA+  +     ++    +       +L   T       +  R   
Sbjct: 281 GVYDWRAEREAVVGLEAV-SDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLAR 339

Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
              ++            ++ I              +   ++  KT + + +  G  + R 
Sbjct: 340 PVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRT 393

Query: 337 FFPYTQAAFLLVERGT----DLYLIDRAITKFGM--PMGPFRLADLVGFGV--AIATGMQ 388
                  A   +++G     D   ID A+ + G+  P GP      +G+     +   +Q
Sbjct: 394 VAMIINEALDALQKGVASEQD---IDTAM-RLGVNYPYGPLAWGAQLGWQRILRLLENLQ 449

Query: 389 FIENFPERTYKSMIIPIMQEDK--RAGETTRKGFYLYD 424
              ++ E  Y+     ++++     +G  +  G + + 
Sbjct: 450 --HHYGEERYRPC--SLLRQRALLESGYESE-GHHHHH 482

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  264 bits (678), Expect = 2e-85
 Identities = 100/295 (33%), Positives = 144/295 (48%), Gaps = 18/295 (6%)

Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG- 201
               VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK  
Sbjct: 11  KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70

Query: 202 ----KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC 256
               K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H 
Sbjct: 71  AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130

Query: 257 ILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316
           I ASNTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190

Query: 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGM--PMGPFRL 373
            + K P+   +  GF VNR+  PY   A  L ERG      ID A+ K G   PMGPF L
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAM-KLGAGYPMGPFEL 249

Query: 374 ADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
            D VG      I  G     +     ++    P + +     +  +K   GFY Y
Sbjct: 250 LDYVGLDTTKFIVDGW-HEMDAENPLHQP--SPSLNKLVAENKFGKKTGEGFYKY 301

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  239 bits (613), Expect = 5e-76
 Identities = 85/311 (27%), Positives = 138/311 (44%), Gaps = 31/311 (9%)

Query: 138 TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR 197
           +D         KV ++G GLMG GIA A+  S + V+L++V+EK LEA   ++   L S+
Sbjct: 3   SDKIHHHHHHMKVFVIGAGLMGRGIAIAI-ASKHEVVLQDVSEKALEAAREQIPEELLSK 61

Query: 198 VKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCI 257
                            +      E  KD D+V+EA+ E+++ K ++  ++E+    +  
Sbjct: 62  -----------------IEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102

Query: 258 LASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317
           L SNTS I ++ I ER  S  R +G H+ +P HVMPL+EIV +  T  + +  +    ++
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162

Query: 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAI-TKFGM---PMGPFRL 373
           + K  +V        VNR        A  ++E G     +DR      G+     GP   
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220

Query: 374 ADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKAS 430
            D +G  VA    +   + F +  +K      +QE  + GE   K   G Y Y  +    
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKP--PEWLQEKIKKGEVGVKAGKGIYEYGPKAYEE 278

Query: 431 PDPEVKKFIEK 441
               +KK +  
Sbjct: 279 RVERLKKLLRF 289

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 66.6 bits (162), Expect = 8e-12
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA-------TLYKT 53
                + V+GE A +  LVD VV PNQ     +  AL++                 + +T
Sbjct: 198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERT 257

Query: 54  DKIEPLGEAREIFKFAR----AQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDF 109
           D+ + L          R    A    +AP    P     +V AG    P     +E +D 
Sbjct: 258 DREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWP-LKFAREFDDA 316

Query: 110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDL 140
              +R+        +F  +     +      
Sbjct: 317 ILSMRTNELAVGTWVFRTEGDARHLLAADAS 347

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 315 GKKIKKTPIVVGNCTGFAVN--RMFFPYTQAAFLLVERGT----DLYLIDRAITKFGM-- 366
           G    + P +  +     +N     F     A  LVE G     D   ID AI K G+  
Sbjct: 1   GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQD---IDTAI-KLGLNR 55

Query: 367 PMGPFRLADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK 418
           P GPF LA   G          +   + F ++ ++      ++E K        
Sbjct: 56  PFGPFELAKQFGAEQIAKRLEELA--KQFGKKIFEP--AKTLKEGKLEELLKAG 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 8e-08
 Identities = 60/440 (13%), Positives = 121/440 (27%), Gaps = 147/440 (33%)

Query: 58  PLGEAREIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
            +   +   +  R    K   N L   +V ++V  A             A +        
Sbjct: 226 RIHSIQA--ELRRLLKSKPYENCL---LVLLNVQNAKAW---------NAFNLS------ 265

Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAI--LGGGLMGSGIATALILSNY--- 171
            CK L+        T++   VTD  L+      +++      L         +L  Y   
Sbjct: 266 -CKILL--------TTRFKQVTDF-LSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDC 313

Query: 172 -----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLD----- 220
                P  +   N     + I     +  +     K    +K    I     VL+     
Sbjct: 314 RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 221 --YESF----KDVD---MVIE----AIIENVSLKQQIFADLEKYCPPHCILA-----SNT 262
             ++             +++      +I++      +   L KY      L       +T
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYS-----LVEKQPKEST 425

Query: 263 STI-DL----------------NLIGE----RTYSKDRIVGAH----FFSPAHV---MPL 294
            +I  +                +++      +T+  D ++  +    F+S  H+   +  
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGHHLKN 483

Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
           +E          V +D   + +KI+       N +G  +N            L      L
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-NASGSILN-----------TL----QQL 527

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKS-----MIIPIMQED 409
                 I     P     +  +          + F+    E    S     + I +M ED
Sbjct: 528 KFYKPYICD-NDPKYERLVNAI----------LDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 410 KRAGETTRKGFYLYDERRKA 429
           +           +++E  K 
Sbjct: 577 E----------AIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 66/493 (13%), Positives = 144/493 (29%), Gaps = 138/493 (27%)

Query: 2   MLTSKPVKGEEAHSLGLVDAVVAPNQLV--------STARQWALDILEHRRPWVATLYKT 53
           +L+ + +     H +   DAV    +L            +++  ++L     ++ +  KT
Sbjct: 45  ILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 54  DKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
           ++ +P      ++     + R +  N        +V         R    +     ++ L
Sbjct: 101 EQRQPSMM-TRMY----IEQRDRLYNDNQVFAKYNV--------SR---LQPYLKLRQAL 144

Query: 114 RSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG--IATALILSNY 171
                  L                       R  K V I G    GSG       +  +Y
Sbjct: 145 -----LEL-----------------------RPAKNVLIDGVL--GSGKTWVALDVCLSY 174

Query: 172 PVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMV 230
            V  K   + F L                  +   E  +K +  +    ++ S  D    
Sbjct: 175 KVQCKMDFKIFWLNLK----------NCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSN 222

Query: 231 IEAIIENVSLKQQIFADLEKYCPPHC--ILA--SNTSTIDLNLIGERTY--SKDRIVGAH 284
           I+  I ++  + +     + Y   +C  +L    N    +   +  +    ++ + V   
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TD 279

Query: 285 FFSPAHVMPL-LEIVRTNQTSPQVIVDLLD--IGKKIKKTPIVVGNCTG--FAVNRMFFP 339
           F S A    + L+      T  +V   LL   +  + +  P  V   T     ++ +   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREV--LTTNPRRLS-II-- 333

Query: 340 YTQAAFLLVERGT-DLYL------IDRAITKFGMPMGP--FR--LADLVGF--GVAIATG 386
              A  +     T D +       +   I      + P  +R     L  F     I T 
Sbjct: 334 ---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 387 M------QFIENFPERTYKSMIIPIMQE-------DKRAGETTRKGFYLYD----ERRKA 429
           +        I++            ++ +       +K+  E+T     +       + K 
Sbjct: 391 LLSLIWFDVIKSDVMV--------VVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKL 439

Query: 430 SPDPEV-KKFIEK 441
             +  + +  ++ 
Sbjct: 440 ENEYALHRSIVDH 452

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
               +K   GE A + G +D +  P  ++S A + A +    
Sbjct: 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL 200

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            ++ ++    E A + G +D VV+  +L   A   A  + + 
Sbjct: 159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI 200

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            +         EA  +G+VD VV   Q+ STA       +  
Sbjct: 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
           ++LT      + A   GL +  +   +++  A + A DI  +  P
Sbjct: 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAP 206

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M +T + +  +EA  +GLV+ V    +     R++A  +   
Sbjct: 166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANS 207

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           MMLTS P+ G EA   GLV+ V A    +    + A  I   
Sbjct: 162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK 203

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
           ++L+ +    EEA  LGLV  VV P QL+  A ++A DI  +  P
Sbjct: 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP 238

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ + +    EEA +LGL+D +VAP+ +  +A  WA   LE 
Sbjct: 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC 220

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            ++T K   G++A  +GLV+  V   QL     + A ++LE 
Sbjct: 170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEK 211

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M+ T +  +G+E    G+   VV+   +++ A+Q    I
Sbjct: 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKI 192

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
           +ML       E+   +GLVD VV   Q V+   Q  
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI 239

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ T + +  +EA   GLV+ VV  + L   A + A  I  +
Sbjct: 166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            + T   +  +EA  LG+V+ VV+P  L+    + A  + E 
Sbjct: 159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQ 200

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++L  + +  +E  +  LVD VV P++L +   +    +   
Sbjct: 347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGD 388

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 7/42 (16%), Positives = 14/42 (33%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           MMLT +     E    G    ++        A +    + ++
Sbjct: 170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ T + +  EE    G+V+ VV  ++L +  R  A +I + 
Sbjct: 179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM 220

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            +LTS     + A   G V+  V   +L       A  +   
Sbjct: 168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF 209

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ +++    +EA  +G V    A  Q  +     A      
Sbjct: 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL 200

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    E+ H +G V+AV    +L +   QWA +I   
Sbjct: 232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT +PV   EA  +GLV+ VVA  Q    A   A +I   
Sbjct: 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAF 206

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 8/39 (20%), Positives = 21/39 (53%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            + T + +  ++A+ L +V  V+  ++L+  A + A  +
Sbjct: 181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTL 219

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT + +   EA   GLV  VV  + L++ AR  A  I + 
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQM 220

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 36/116 (31%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
            MLT+      EAH +G+V  +V   + V TA   A  I                  PLG
Sbjct: 166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQ--------------APLG 211

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
                      QA  +                 V  G  A  ++     ++L  SE
Sbjct: 212 ----------VQATLRN------------ARLAVREGDAAAEEQLVPTVRELFTSE 245

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT+     E A S G ++  +  ++L     + A +I   
Sbjct: 171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAAL 212

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +MLT + V  +EA  +GLV   VA   L+         I   
Sbjct: 188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGF 229

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT +P+    A   GL++ VV    ++  A   A  I  +
Sbjct: 165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVN 206

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           + LT +    E+A   G ++ +V   Q + TA + A  I  +
Sbjct: 157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN 198

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    +EA  +GLV+ VV   ++     QW  +I++H
Sbjct: 171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           + LT + +  EEA  +GLV  +V    L+  A   A  I   
Sbjct: 164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARM 205

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           M+LT   +  ++A   GLV  +     LV  A Q A  I  + +  VA
Sbjct: 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 208

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++   + +         LV+ VV  + L+  A   A  +  +
Sbjct: 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY 198

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M LT   +  ++A   GLV  VVA + L++ AR+ A  I+ +
Sbjct: 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN 197

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    +EA  +G+V+ VV  ++L     QWA +IL  
Sbjct: 173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSK 214

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           + LT   +  E AH+LG+V+ +  P   +  A   A  I  +
Sbjct: 166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITAN 207

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +LT      +EA  + L+  VV P + ++ A ++A  I
Sbjct: 169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI 207

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT + +   EA  +GLV  VV   Q ++ A + A  I  +
Sbjct: 179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAAN 220

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +LT + + GEEA  +GLV   V  ++++ TA + A ++
Sbjct: 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENL 209

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    ++A  +GLV+ VV    L     +W  ++L++
Sbjct: 187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN 228

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ T+ P+  + A ++G+++ VV   +L     Q A  I E 
Sbjct: 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT + V+  EA +LGLV+ +  P + +  A+  A ++ ++
Sbjct: 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +LT + +    A   G V+ V++  +L+  A + A  I
Sbjct: 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGI 210

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M++  K +   EA + GLV  V   +             
Sbjct: 185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAF 223

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +L ++P+ GEEA  LGLV   V   ++   A + A  +
Sbjct: 168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M+LT +P+   EA+  GLV  VV     +  AR  A  I+ +
Sbjct: 166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRN 207

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++++S+ +  EEA  +GLV  + +P +L+  AR+ A  +
Sbjct: 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEIL 201

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++ T   + G +A   GL      P  L +   +    I
Sbjct: 218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERI 256

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
           + ++++      A+SL LV   V  + L+    ++A  I  
Sbjct: 162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISN 202

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M LT      + A + GL++ ++    L +     A  +
Sbjct: 167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGAL 205

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M+L+ + +  +EA   GLV  V  P            ++
Sbjct: 165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKEL 203

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           + +  + V  EEA +LGL   V+  +      +Q+A  +
Sbjct: 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERL 196

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           +++    V+  EA  +GL+  +    +    AR  A  + +   P +A
Sbjct: 178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLAD--GPALA 223

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M++  + +   EA + GLV  V               ++
Sbjct: 183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 5/36 (13%), Positives = 15/36 (41%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
           M +T++ +    A   G++  + + ++  S      
Sbjct: 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVL 191

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++ +++ + G+EA ++GL+  V+  NQ    A + ALD+
Sbjct: 169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDL 207

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 1   MMLT--SKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M L    + +  + A+ LGL+  +V  ++L+  A + A  +  +
Sbjct: 173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSN 216

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           M++T + V  ++A  LGLV+ VVAP  L          I+   R  VA
Sbjct: 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA 229

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           +MLT++ +  EEA   GLV  V   ++    A + A ++
Sbjct: 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVAREL 202

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           M+ T +P+  +EA   GL+  VV   +L     + A  I    RP V+
Sbjct: 189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.92
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.91
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.87
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.82
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.8
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.77
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.75
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.72
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.72
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.7
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.69
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.69
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.68
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.68
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.68
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.67
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.67
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.66
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.64
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.64
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.64
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.62
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.59
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.59
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.59
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.57
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.57
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.57
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.57
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.57
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.56
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.56
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.56
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.55
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.53
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.53
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.53
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.53
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.53
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.52
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.51
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.5
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.5
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.5
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.49
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.48
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	99.48
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	99.47
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.47
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.47
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.46
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.46
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.46
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.46
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	99.46
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.45
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.44
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.44
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.42
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.42
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	99.42
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	99.42
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	99.41
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	99.41
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.41
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.41
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	99.4
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.4
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.4
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	99.4
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.4
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	99.4
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	99.4
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.39
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	99.39
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	99.38
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	99.38
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	99.38
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	99.38
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.38
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	99.38
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.37
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	99.36
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	99.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.36
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	99.36
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	99.35
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	99.35
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	99.35
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.34
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	99.34
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	99.34
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	99.33
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	99.33
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	99.32
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	99.31
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.31
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.31
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	99.31
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	99.3
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	99.3
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	99.3
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.3
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	99.29
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	99.29
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	99.29
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	99.29
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	99.28
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	99.28
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	99.27
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	99.26
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	99.25
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.25
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	99.25
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	99.23
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.22
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	99.22
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.22
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.21
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	99.21
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	99.21
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	99.21
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.2
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.2
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.2
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	99.2
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	99.19
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.19
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	99.19
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.18
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.18
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.18
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.18
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	99.17
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.17
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.17
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	99.17
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	99.15
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.13
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.12
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	99.12
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	99.11
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.1
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	99.09
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	99.08
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	99.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.08
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	99.06
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	99.06
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.63
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.04
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	99.03
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	99.01
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.99
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.95
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.95
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	98.94
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.94
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.9
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.9
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.89
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	98.89
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.89
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.89
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	98.87
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	98.87
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.86
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.82
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.81
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.8
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.77
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.77
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.75
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	98.72
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.7
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	98.69
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.68
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	98.63
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.62
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.62
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.61
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	98.6
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.59
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.59
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.58
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.57
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.56
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.54
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.49
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	98.48
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.48
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.46
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.45
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.44
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.44
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.43
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.43
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.42
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.42
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.4
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	98.39
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.39
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.38
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.37
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.37
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.35
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.35
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.35
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.34
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.34
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.33
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.32
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.3
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.28
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.28
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.26
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.25
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.21
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.2
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.19
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.17
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.17
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.11
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.09
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.09
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.02
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.01
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.0
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.0
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.99
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.99
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.94
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.93
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.93
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.9
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.89
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.86
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.84
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.81
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.8
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.78
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.75
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.72
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.71
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.71
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.66
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.62
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.6
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.58
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.56
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.54
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.53
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.53
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.47
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.46
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.43
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.41
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.41
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.39
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.38
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.38
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.38
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.37
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.36
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.35
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.35
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.32
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.32
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.32
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.3
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.28
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.27
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.26
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.25
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.25
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.25
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.24
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.22
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.21
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.21
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.21
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.19
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.19
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.19
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.15
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.15
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.15
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.13
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.12
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.08
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.07
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.06
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.06
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.03
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.03
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.97
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.96
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.94
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.92
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.92
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.91
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.9
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.89
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.88
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.88
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.83
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.83
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.82
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.82
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.81
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.8
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.78
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.78
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.76
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.74
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.71
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.7
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.68
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.67
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.66
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.65
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.65
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.59
4had_A	350	Probable oxidoreductase protein; structural genomi	96.56
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.55
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.44
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.4
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.4
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.37
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.31
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.3
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.3
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	96.28
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.23
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.23
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.22
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.2
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.18
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.12
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.98
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.96
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.95
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.94
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.94
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.94
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.93
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.81
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.79
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.77
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.74
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.71
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	95.7
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.7
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.66
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.65
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.64
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.59
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.59
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.57
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.54
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.47
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.45
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.42
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.41
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.33
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.33
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.3
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.19
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.16
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.11
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.04
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.02
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.99
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	94.94
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.91
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.91
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.9
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.84
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.82
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	94.81
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	94.81
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.8
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.74
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	94.72
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.72
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.64
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.62
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.61
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.6
1lnq_A	336	MTHK channels, potassium channel related protein;	94.55
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	94.52
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.52
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	94.52
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.49
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.48
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.48
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.45
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.4
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.37
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.32
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	94.31
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.18
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.17
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.15
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	94.14
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	94.11
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.09
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	94.06
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.03
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.03
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.0
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	93.97
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.96
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.95
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.94
3dme_A	369	Conserved exported protein; structural genomics, P	93.93
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.92
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.89
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.85
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.81
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	93.81
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.79
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	93.78
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.76
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.76
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.74
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	93.68
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.67
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	93.65
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.59
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	93.51
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	93.46
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	93.46
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.45
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.44
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	93.44
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.43
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.43
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.42
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	93.41
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	93.39
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.38
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	93.32
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	93.29
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.25
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.24
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.23
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	93.21
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.2
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	93.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.14
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	93.14
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	93.13
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.13
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	93.13
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	93.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.98
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	92.96
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	92.94
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	92.89
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	92.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.88
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	92.86
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.86
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.85
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	92.85
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	92.81
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.79
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	92.71
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.69
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	92.67
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	92.65
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.61
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	92.6
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.6
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.6
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	92.55
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	92.54
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	92.53
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	92.52
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.47

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=8.8e-86  Score=721.53  Aligned_cols=473  Identities=30%  Similarity=0.485  Sum_probs=407.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++. +++|.++|++++.++ +. .+................+..++++++++.++|
T Consensus       170 l~ltG~~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  246 (742)
T 3zwc_A          170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKP-IE-PRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGV  246 (742)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSC-SG-GGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHcCCchhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCC-ch-hhhhhcccccccchhhhhHHHHHHHHhhhccch
Confidence            589999999999999999999998764 678999999999873 32 222212222222222344567778888889999


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCC---CCCCCcccceEEEEEeCCh
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVT---DLGLAPRRVKKVAILGGGL  157 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~---~~~~~~~~~~kV~VIGaG~  157 (496)
                      |||.+++++++.+...+++++++.|++.|.+|+.|+++++++++||++|+++|.+...   ..+..+++|+||+|||+|+
T Consensus       247 ~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~  326 (742)
T 3zwc_A          247 LAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGT  326 (742)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSH
T ss_pred             hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccH
Confidence            9999999999999999999999999999999999999999999999999998865432   2244567899999999999


Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCC
Q 010966          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN  237 (496)
Q Consensus       158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~  237 (496)
                      ||++||..++.+|++|+++|++++.++++.+.+...+++.+.++..+..  .....+++++++++++++||+|||||||+
T Consensus       327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~  404 (742)
T 3zwc_A          327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFED  404 (742)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSC
T ss_pred             HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEecccc
Confidence            9999999999999999999999999999999999999888877655432  33457888899999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 010966          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (496)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~  317 (496)
                      +++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+|||||+++.|++++++.+.++.+.
T Consensus       405 l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~  484 (742)
T 3zwc_A          405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKK  484 (742)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCC--
Q 010966          318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE--  395 (496)
Q Consensus       318 lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~--  395 (496)
                      +||+||+++|+||||+||++.++++||++++++|+++++||.+++++|||||||+++|.+|||+++++++.+....++  
T Consensus       485 lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~  564 (742)
T 3zwc_A          485 IGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP  564 (742)
T ss_dssp             TTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSC
T ss_pred             hCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887654433  


Q ss_pred             ---------CccccchHHHHHhcCCCccccCceeeeecCC--CCCCCChHHHHH--------------------------
Q 010966          396 ---------RTYKSMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKF--------------------------  438 (496)
Q Consensus       396 ---------~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~--~~~~~~~~~~~~--------------------------  438 (496)
                               ...+++++++|+++|++|+|||+|||+|+++  ++..+++++..+                          
T Consensus       565 ~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~R~l~  644 (742)
T 3zwc_A          565 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLY  644 (742)
T ss_dssp             TTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHH
T ss_pred             ccchhhhcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcCCCCHHHHHHHHHH
Confidence                     1224679999999999999999999999753  334566654433                          


Q ss_pred             --HHHHHHh--cCCccChhhhh---HhhcccccccccCCCcceeccc
Q 010966          439 --IEKARSM--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGA  478 (496)
Q Consensus       439 --~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~  478 (496)
                        +++..++  ++++.++..+|   +||.||+++......+..-+|-
T Consensus       645 ~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~  691 (742)
T 3zwc_A          645 SLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGL  691 (742)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCH
T ss_pred             HHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHH
Confidence              3333444  57888888888   8999999988766555555553

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-78  Score=666.88  Aligned_cols=478  Identities=72%  Similarity=1.143  Sum_probs=399.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcc-hhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWV-ATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++.+.+|+. ...+. ...+.....+..+..+++++.++.++
T Consensus       166 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~g  244 (725)
T 2wtb_A          166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKT-DKLPPLGEAREILTFAKAQTLKRAPN  244 (725)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCC-TTSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhc-cccCccchHHHHHHHHHHHHHHhccC
Confidence            57999999999999999999999999999999999999987522332 11100 01111112233677889999999988


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCChhh
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMG  159 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~mG  159 (496)
                      ||||..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++..+.+..+++|+||+|||+|.||
T Consensus       245 ~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG  324 (725)
T 2wtb_A          245 MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMG  324 (725)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECCSHHH
T ss_pred             CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEEcCCHhh
Confidence            99999999999999999999999999999999999999999999999999999987732113345678999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCChH
Q 010966          160 SGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS  239 (496)
Q Consensus       160 ~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~  239 (496)
                      ++||..|+++|++|++||++++.++.+.+.+.+.+++.+++|.+++.+....+++++.+++++++++||+|||||||+.+
T Consensus       325 ~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaVpe~~~  404 (725)
T 2wtb_A          325 SGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENIS  404 (725)
T ss_dssp             HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEECCCSCHH
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEcCcCCHH
Confidence            99999999999999999999999999988899999988889988887778888999999999889999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 010966          240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIK  319 (496)
Q Consensus       240 ~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG  319 (496)
                      +|+.+++++.+++++++||+||||+++++++++.+.+|++|+|+|||+|++.++++|+++++.|++++++.+.++++.+|
T Consensus       405 vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lG  484 (725)
T 2wtb_A          405 LKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIK  484 (725)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC-cc
Q 010966          320 KTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER-TY  398 (496)
Q Consensus       320 k~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~-~~  398 (496)
                      +.|++++|.+||++||++.++++|++.++++|+++++||++|.++|+|||||+++|.+|||+++++++.+++.++++ +.
T Consensus       485 k~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~  564 (725)
T 2wtb_A          485 KTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYK  564 (725)
T ss_dssp             CEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHSGGGCCC
T ss_pred             CEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHhcCCccCC
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999888876 55


Q ss_pred             ccchHHHHHhcCCCccccCceeeeecCCCCCCCChH--------------------------------HHHHHHHHHHh-
Q 010966          399 KSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPE--------------------------------VKKFIEKARSM-  445 (496)
Q Consensus       399 ~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~~~~~~~--------------------------------~~~~~~~~~~~-  445 (496)
                      | +++++|+++|++|+|||+|||+|++.++..++++                                +..++++...+ 
T Consensus       565 ~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l  643 (725)
T 2wtb_A          565 S-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVF  643 (725)
T ss_dssp             C-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            6 8999999999999999999999963211111111                                23444455555 


Q ss_pred             -cCCccChhhhh---HhhcccccccccCCCcceeccccc
Q 010966          446 -SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGI  480 (496)
Q Consensus       446 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~  480 (496)
                       ++++.+++.+|   +||.||++++...-.+...+|-..
T Consensus       644 ~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~  682 (725)
T 2wtb_A          644 AEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKY  682 (725)
T ss_dssp             HTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHH
T ss_pred             hcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHH
Confidence             68998999888   899999998877666666666443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=8.7e-79  Score=669.65  Aligned_cols=481  Identities=31%  Similarity=0.496  Sum_probs=417.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhccc-CCCC-CchhHHHHHHHHHHHHHhhCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKIE-PLGEAREIFKFARAQARKQAP   78 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~   78 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++.+..|+..+.... .+.. ++......+..+++++.++++
T Consensus       167 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~  246 (715)
T 1wdk_A          167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG  246 (715)
T ss_dssp             HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHHhcc
Confidence            57999999999999999999999999999999999999987522322111100 0000 111111246778888988876


Q ss_pred             -CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCCh
Q 010966           79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL  157 (496)
Q Consensus        79 -~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~  157 (496)
                       |||||..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++.++ + .+++++||+|||+|+
T Consensus       247 g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~VIGaG~  324 (715)
T 1wdk_A          247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAVLGAGI  324 (715)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEEECCHH
T ss_pred             cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEEECCCh
Confidence             7999999999999999999999999999999999999999999999999999988765222 2 346789999999999


Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCC
Q 010966          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN  237 (496)
Q Consensus       158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~  237 (496)
                      ||++||..|+++|++|++||++++.++.+.+++.+.+++.+++|.+++.+....+++++.+++++.+++||+|||||||+
T Consensus       325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaV~e~  404 (715)
T 1wdk_A          325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVEN  404 (715)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEECCCSC
T ss_pred             hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999888888888999998898899999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 010966          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (496)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~  317 (496)
                      .++|+.+++++.+++++++||+||||+++++++++.+.+|++|+|+|||+|++.++++|+++++.|++++++.+.++++.
T Consensus       405 ~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~  484 (715)
T 1wdk_A          405 PKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK  484 (715)
T ss_dssp             HHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCCc
Q 010966          318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT  397 (496)
Q Consensus       318 lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~~  397 (496)
                      +|+.|++++|.+||++||++.++++|++.++++|+++++||.+|.++|+|||||+++|.+|||+++++++.+++.+++++
T Consensus       485 lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~  564 (715)
T 1wdk_A          485 MGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRM  564 (715)
T ss_dssp             TTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHH
T ss_pred             hCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999998887776


Q ss_pred             ccc--chHHHHHhcCCCccccCceeeeec-C--CC-CCCCChHHH------------------------HHHHHHHHh--
Q 010966          398 YKS--MIIPIMQEDKRAGETTRKGFYLYD-E--RR-KASPDPEVK------------------------KFIEKARSM--  445 (496)
Q Consensus       398 ~~~--~~l~~~~~~G~lG~k~g~GFY~y~-~--~~-~~~~~~~~~------------------------~~~~~~~~~--  445 (496)
                      .|+  +++++|+++|++|+|||+|||+|+ +  ++ +..+|+++.                        .++++...+  
T Consensus       565 ~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~  644 (715)
T 1wdk_A          565 KDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQRDVTDEDIINWMMIPLCLETVRCLE  644 (715)
T ss_dssp             CCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhccCccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            677  899999999999999999999996 3  32 233454443                        333344444  


Q ss_pred             cCCccChhhhh---HhhcccccccccCCCcceecccccccc
Q 010966          446 SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKFN  483 (496)
Q Consensus       446 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~~  483 (496)
                      ++++.+++.+|   +||.||++++...-.++..+|-....+
T Consensus       645 egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~  685 (715)
T 1wdk_A          645 DGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVA  685 (715)
T ss_dssp             HTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHH
T ss_pred             cCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHH
Confidence            58998998888   899999998877766666677544333

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=3.8e-65  Score=529.41  Aligned_cols=356  Identities=29%  Similarity=0.423  Sum_probs=309.2

Q ss_pred             HHHHhhcCCCCCCCC--C--CCCCCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 010966          123 HIFFAQRGTSKVPGV--T--DLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRV  198 (496)
Q Consensus       123 ~aF~~kr~~~~~~~~--~--~~~~~~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~  198 (496)
                      ++|+.+|..++..-.  .  -....+++|+||+|||+|+||++||..++++|++|++||++++   ++.+++.+.+++.+
T Consensus        26 ~~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~  102 (460)
T 3k6j_A           26 YLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREK  102 (460)
T ss_dssp             HHHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHH
T ss_pred             HHHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHH
Confidence            345566766554221  1  1123457789999999999999999999999999999999998   45677888899999


Q ss_pred             HcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCC
Q 010966          199 KKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKD  278 (496)
Q Consensus       199 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~  278 (496)
                      ++|.++.++.+..+++++++++++++++||+|||||||++++|+++|++|++.+++++||+||||+++++++++.+.+|+
T Consensus       103 ~~G~l~~~~~~~~~~~i~~t~dl~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~  182 (460)
T 3k6j_A          103 SFKRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPS  182 (460)
T ss_dssp             HTTSCCHHHHHHHHTTEEEESCGGGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGG
T ss_pred             HcCCCCHHHHHHHhcceEEeCCHHHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCc
Confidence            99999998888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHH-HcCCCHHHH
Q 010966          279 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV-ERGTDLYLI  357 (496)
Q Consensus       279 r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~-~~g~~~~~I  357 (496)
                      ||+|+|||+|++.++++||++++.|++++++.+.++++.+||+|++++|+|||++||++.++++||+.++ ++|+++++|
T Consensus       183 r~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~I  262 (460)
T 3k6j_A          183 NLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQI  262 (460)
T ss_dssp             GEEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             ceEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 789999999


Q ss_pred             HHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCCccccchHHHHHhcCCCccccCceeeeecCCCC-CCCChHHH
Q 010966          358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPEVK  436 (496)
Q Consensus       358 D~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~-~~~~~~~~  436 (496)
                      |++|+++|||||||+++|++|||+++++.+.+.      ..+++++++|+++|+||+|||+|||+|+++++ ..+++++.
T Consensus       263 D~a~~~~G~pmGPf~l~D~vGlD~~~~i~~~~~------~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~  336 (460)
T 3k6j_A          263 DKIITNFGFLMGPMTVADMNGFDVMEKLKKENG------LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEME  336 (460)
T ss_dssp             HHHHHHHTBSSCHHHHHHHHCTHHHHHHHHHSC------CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHH
T ss_pred             HHHHHHcCCCcCHHHHHHHhchHHHHHHHHHhc------cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHH
Confidence            999999999999999999999999999987652      12448999999999999999999999987543 34454433


Q ss_pred             ----------------------------HHHHHHHHh--cCCccChhhhh---HhhcccccccccCCCcceecccccccc
Q 010966          437 ----------------------------KFIEKARSM--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKFN  483 (496)
Q Consensus       437 ----------------------------~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~~  483 (496)
                                                  .++++...+  ++++.++..+|   +||.||+++.-..-.+...+|-.-..+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~  416 (460)
T 3k6j_A          337 QIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIAN  416 (460)
T ss_dssp             HHHHHC---CCCSSCCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHH
T ss_pred             HHHHHHHHhcCCCcccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHH
Confidence                                        334445555  58888888887   899999999887777777777655544


Q ss_pred             cccc
Q 010966          484 TKPQ  487 (496)
Q Consensus       484 ~~~~  487 (496)
                      ...+
T Consensus       417 ~l~~  420 (460)
T 3k6j_A          417 MLVH  420 (460)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=6.3e-60  Score=497.19  Aligned_cols=280  Identities=34%  Similarity=0.562  Sum_probs=267.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +++||+|||+|+||++||..++++|++|++||++++.++.+.+++.+.+++.+++|.++..+.+..++++++++++++++
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALA   83 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhc
Confidence            46799999999999999999999999999999999999999999999999999999999988888999999999999999


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||+||+||||+.++|+++++++++.+++++||+||||+++++++++.+.+|++++|+|||+|++.++++|+++++.|++
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~  163 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA  163 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~  383 (496)
                      ++++.+.++++.+|+.|++++|+|||++||++.++++||+.++++|. |+++||++|+ ++|||||||+++|.+|+|+++
T Consensus       164 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~  243 (483)
T 3mog_A          164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNF  243 (483)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999988 8999999999 899999999999999999999


Q ss_pred             HhhhhhhhhC-CCC-ccccchHHHHHhcCCCccccCceeeeecC
Q 010966          384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (496)
Q Consensus       384 ~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~  425 (496)
                      ++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|++
T Consensus       244 ~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~  287 (483)
T 3mog_A          244 AVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRA  287 (483)
T ss_dssp             HHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTS
T ss_pred             HHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCC
Confidence            9999998876 343 44678899999999999999999999975

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=9e-60  Score=495.72  Aligned_cols=371  Identities=30%  Similarity=0.506  Sum_probs=307.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCCCC--CC-CCCCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          114 RSETCKSLVHIFFAQRGTSKVPGV--TD-LGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       114 ~s~~a~~~i~aF~~kr~~~~~~~~--~~-~~~~~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .|++++++++.||.+|+.+|.++.  .. .+..+++++||+|||+|.||++||..|+.+|++|++||++++.++.+.+.+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            489999999999999999985531  11 123356789999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHH
Q 010966          191 RANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (496)
Q Consensus       191 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~l  270 (496)
                      .+.++..+++|.++..+.+....++  +++++++++||+||+|||++.++|+++++++.+++++++||+||||+++++++
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKPKLRF--SSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCEEE--ESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHhhh--cCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            8888777777654433222222233  56778899999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHc
Q 010966          271 GERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER  350 (496)
Q Consensus       271 a~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~  350 (496)
                      ++.+.+|++++|+|||+|++.++++|+++++.|++++++.+.++++.+|++|+++++.+||++||++.++++|+++++++
T Consensus       159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~  238 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE  238 (463)
T ss_dssp             HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence            99998999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhh---hhCC-------CC-ccccchHHHHHhcCCCccccCce
Q 010966          351 GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFI---ENFP-------ER-TYKSMIIPIMQEDKRAGETTRKG  419 (496)
Q Consensus       351 g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~---~~~~-------~~-~~~~~~l~~~~~~G~lG~k~g~G  419 (496)
                      |+++++||.+|+++|+|||||+++|.+|||+++++++.+.   +.++       +. ..+++++++|+++|++|+|||+|
T Consensus       239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G  318 (463)
T 1zcj_A          239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG  318 (463)
T ss_dssp             TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred             CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence            9999999999999999999999999999999999998772   2211       11 11268999999999999999999


Q ss_pred             eeeecC-CCC-CCCChHH----------------------------HHHHHHHHHh--cCCccChhhhh---Hhhccccc
Q 010966          420 FYLYDE-RRK-ASPDPEV----------------------------KKFIEKARSM--SGVAIDPKVLS---FFLTGYSK  464 (496)
Q Consensus       420 FY~y~~-~~~-~~~~~~~----------------------------~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~  464 (496)
                      ||+|++ +++ ...++++                            ..++++...+  +++..+++.+|   +++.||++
T Consensus       319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~  398 (463)
T 1zcj_A          319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPR  398 (463)
T ss_dssp             SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCG
T ss_pred             eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence            999953 322 2233332                            2333343343  57888888888   79999999


Q ss_pred             ccccCCCcceeccccccccccc
Q 010966          465 LCCTGVFPLTVLGAGIKFNTKP  486 (496)
Q Consensus       465 ~~~~~~~~l~~~g~~~~~~~~~  486 (496)
                      ++-..-.+...+|=+...+...
T Consensus       399 ~~gGP~~~~D~~Gl~~~~~~~~  420 (463)
T 1zcj_A          399 HKGGPMFYAASVGLPTVLEKLQ  420 (463)
T ss_dssp             GGCCHHHHHHHHCHHHHHHHHH
T ss_pred             CCcChHHHHHHhCHHHHHHHHH
Confidence            8876655555566554444433

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=5.7e-59  Score=462.54  Aligned_cols=269  Identities=22%  Similarity=0.344  Sum_probs=239.2

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcceecccCcc-c
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-S  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~  223 (496)
                      .+.||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.++.. ..+..+++++.+++++ +
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4679999999999999999999999999999999999999999999999999999988744 4566788999999985 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+|||||||++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|||||||+++.|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCceEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV  377 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~  377 (496)
                      ++++++.+.+|++.+|++|+++ +|+||||+||++.++++||++++++|+ |+++||.+|+ |+|+|   ||||+++|++
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999866 799999999999999999999999998 9999999999 88876   9999999999


Q ss_pred             CchhHHHhhhhhhhhCCCCccccchHHHH-HhcCCCccccCceeeeecC
Q 010966          378 GFGVAIATGMQFIENFPERTYKSMIIPIM-QEDKRAGETTRKGFYLYDE  425 (496)
Q Consensus       378 Gld~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~G~lG~k~g~GFY~y~~  425 (496)
                      |+|+..... .+.          +.++.+ -+.|+.+.++|+++|+|.+
T Consensus       245 G~~~~~~~~-~~~----------~~~~~~~~~~~~~p~~~~~~~~k~~~  282 (319)
T 3ado_A          245 AEGMLSYCD-RYS----------EGMKRVLKSFGSIPEFSGATVEKVNQ  282 (319)
T ss_dssp             TTSHHHHHH-HHH----------HHHHHHHHTCCCCCCCCHHHHHHHHH
T ss_pred             CccHHHHHH-Hhh----------HhHHHHHHHcCcccccchHHHHHHHH
Confidence            998765432 222          122222 2346666666666666543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=3e-57  Score=446.67  Aligned_cols=257  Identities=30%  Similarity=0.450  Sum_probs=239.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      -+||+|||+|+||++||..|+ +|++|++||++++.++++.+.             +    .+..+++++.+++++++++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------------l----~~~~~~~i~~~~~~~~~~~   73 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------------I----PEELLSKIEFTTTLEKVKD   73 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------------S----CGGGGGGEEEESSCTTGGG
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------------H----HHHHhCCeEEeCCHHHHcC
Confidence            479999999999999999999 999999999999998876543             1    2344567888888877999


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHH
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ  306 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e  306 (496)
                      ||+|||||||+.++|+.+|+++++.  +++|++||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.|+++
T Consensus        74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~  151 (293)
T 1zej_A           74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK  151 (293)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence            9999999999999999999999887  89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCc---chhHhhhccCchhH
Q 010966          307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA  382 (496)
Q Consensus       307 ~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~  382 (496)
                      +++.+.++++.+|+.|++++|.  |++||++.++++||+.++++|+++++||++|+ ++|+|+   |||+++|.+|+|++
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~  229 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA  229 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence            9999999999999999999986  99999999999999999999999999999999 999999   99999999999999


Q ss_pred             HHhhhhhhhhCCC-CccccchHHHHHhcCCCccccCceeeeecC
Q 010966          383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (496)
Q Consensus       383 ~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~  425 (496)
                      +++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            9999999998887 455788999999999999999999999965

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=6.8e-57  Score=445.53  Aligned_cols=275  Identities=27%  Similarity=0.413  Sum_probs=256.3

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHhhhcceecccCcc-c
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-KMTQEKFEKTISLLTGVLDYE-S  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~-~  223 (496)
                      .++||+|||+|.||++||..++.+|++|++||++++.++.+.+.+.+.+...+++| .++..+.+...++++.+++++ .
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            46899999999999999999999999999999999999999999999999888888 788777777788888888885 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t  303 (496)
                      +++||+||+|||+++++|+.+++++.+.+++++|++||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t  162 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT  162 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCceEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld  380 (496)
                      ++++++.+.++++.+|+.++++ ++.|||++||++.++++||++++++|. ++++||++|+ ++|+|||||+++|.+|||
T Consensus       163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld  242 (283)
T 4e12_A          163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT  242 (283)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence            9999999999999999999999 689999999999999999999999986 9999999999 999999999999999999


Q ss_pred             hHHHhhhhhhhhCCC-CccccchHHHHHhcCCCccccCceeeee
Q 010966          381 VAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLY  423 (496)
Q Consensus       381 ~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~lG~k~g~GFY~y  423 (496)
                      ++++++++   ..++ ++.|++++++|+++|+||+|||+|||+|
T Consensus       243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            99999874   2222 2346788999999999999999999998

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=3.2e-55  Score=437.63  Aligned_cols=281  Identities=34%  Similarity=0.538  Sum_probs=261.3

Q ss_pred             cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-----HHHhhhcceecc
Q 010966          144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-----KFEKTISLLTGV  218 (496)
Q Consensus       144 ~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-----~~~~~~~~i~~~  218 (496)
                      ..+|+||+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+.++..+++|.++..     +......+++.+
T Consensus        12 ~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~   91 (302)
T 1f0y_A           12 KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   91 (302)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence            446789999999999999999999999999999999999999888888888888888887654     344456678888


Q ss_pred             cCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEE
Q 010966          219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI  297 (496)
Q Consensus       219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lvei  297 (496)
                      ++++ .+++||+||+|||++.++|+.+++++.+++++++||+||+|+++++++++.+.+|++++|+|||+|++.++++|+
T Consensus        92 ~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i  171 (302)
T 1f0y_A           92 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEV  171 (302)
T ss_dssp             SCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEE
T ss_pred             cCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEE
Confidence            8876 789999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhh
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLAD  375 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D  375 (496)
                      ++++.+++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++|. ++++||.+++ ++|||+|||+++|
T Consensus       172 ~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D  251 (302)
T 1f0y_A          172 IKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLD  251 (302)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999985 9999999998 9999999999999


Q ss_pred             ccCchhHHHhhhhhhhhC-CCC-ccccchHHHHHhcCCCccccCceeeeec
Q 010966          376 LVGFGVAIATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYD  424 (496)
Q Consensus       376 ~~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~  424 (496)
                      .+|+|+++++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|+
T Consensus       252 ~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          252 YVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            999999999999999888 665 5688999999999999999999999994

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.92  E-value=3.4e-26  Score=192.71  Aligned_cols=103  Identities=19%  Similarity=0.171  Sum_probs=85.8

Q ss_pred             HcCCceE-EecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhC
Q 010966          317 KIKKTPI-VVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENF  393 (496)
Q Consensus       317 ~lGk~~v-~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~  393 (496)
                      .++|.++ +++|.||||+||++.++++||++++++|+ +++|||.+|+ ++|||+|||+++|.+|+|+++++++.+++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999 88999999999999999999999999998 9999999999 9999999999999999999999999999988


Q ss_pred             CC-CccccchHHHHHhcCCCccccCce
Q 010966          394 PE-RTYKSMIIPIMQEDKRAGETTRKG  419 (496)
Q Consensus       394 ~~-~~~~~~~l~~~~~~G~lG~k~g~G  419 (496)
                      ++ ++.|+++|++|+++|++|+|||+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            88 566889999999999999999987

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.91  E-value=1.3e-24  Score=228.52  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=136.0

Q ss_pred             cCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHH
Q 010966          261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY  340 (496)
Q Consensus       261 ntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~  340 (496)
                      .+++.+.++.  ...+|.++++.|+++    ++++|+++++.|++++++.+.++++.+|+.|+.++|.||||+||++.++
T Consensus       324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~  397 (483)
T 3mog_A          324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI  397 (483)
T ss_dssp             ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred             ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence            4566677766  345789999999988    7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCCC-CccccchHHHHHhcCCCcccc
Q 010966          341 TQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETT  416 (496)
Q Consensus       341 ~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~lG~k~  416 (496)
                      +|||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|+++++++.+++.+++ ++.|+++|.+|+++|++|..-
T Consensus       398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~  476 (483)
T 3mog_A          398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESE  476 (483)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCC
Confidence            999999999999 9999999999 999999999999999999999999999999986 566899999999998665443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.87  E-value=1.4e-22  Score=202.86  Aligned_cols=204  Identities=17%  Similarity=0.237  Sum_probs=163.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||.+||..|+.+|+ +|++||++++.++.....+....            .......+++.+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSM------------VMFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHH------------HHHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhh------------hhcCCCcEEEECCCHHHhCC
Confidence            689999999999999999999999 99999999987775322211110            00111245677778888999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhhcC-CCeeeeccccCcC
Q 010966          227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA  289 (496)
Q Consensus       227 aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~~~-~~r~ig~hf~~P~  289 (496)
                      ||+||+++              +++..+++++++++.++++ ++++  +||++.+....+.+...+ |+|++|+      
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------  145 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------  145 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence            99999999              7888999999999999975 7766  788888877788777766 6888876      


Q ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhc---hHHHHHHHH-------HHHHHcCC-CHHHHH
Q 010966          290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR---MFFPYTQAA-------FLLVERGT-DLYLID  358 (496)
Q Consensus       290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nr---il~~~~~ea-------~~l~~~g~-~~~~ID  358 (496)
                                  .|+.++......+.+.+|+.   .++.+||++|+   .+.++++++       ..++++|+ +++++|
T Consensus       146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id  210 (317)
T 2ewd_A          146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID  210 (317)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence                        36778888888899999986   47889999999   888889998       88889996 999999


Q ss_pred             HHHHhcCCCcchhHhhhccCc-hhHHHhhh
Q 010966          359 RAITKFGMPMGPFRLADLVGF-GVAIATGM  387 (496)
Q Consensus       359 ~a~~~~g~p~GPf~l~D~~Gl-d~~~~~~~  387 (496)
                      ++++..  ++|||+++|.+|. ++.+.+..
T Consensus       211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a~  238 (317)
T 2ewd_A          211 EIVCHT--RIAWKEVADNLKTGTAYFAPAA  238 (317)
T ss_dssp             HHHHHH--HHHHHHHHHHHSSSCCCHHHHH
T ss_pred             HHHHHH--HhhHHHHHHhhcCCchHHHHHH
Confidence            999822  7899999998887 66655433

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.82  E-value=3.5e-19  Score=175.02  Aligned_cols=191  Identities=15%  Similarity=0.133  Sum_probs=145.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~  222 (496)
                      .+||+|||+|.||.+|+..|+++|+   +|++||++++.++...+.          .|             +..+++ .+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~g-------------i~~~~~~~~   59 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------CG-------------VHTTQDNRQ   59 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------TC-------------CEEESCHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------cC-------------CEEeCChHH
Confidence            4689999999999999999999999   999999999987764321          02             233444 45


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT  300 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~  300 (496)
                      .+++||+||+|||.  ..+.+++.++.++ ++++++|+|++++++++.+.+.++.+.+++++||++|...+..++ ++++
T Consensus        60 ~~~~aDvVilav~p--~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVKP--HQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSCG--GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeCH--HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence            68899999999974  5688999999998 899989999999999999999998888999999999999888777 5578


Q ss_pred             CCCCHHHHHHHHHHHHHcCCceEEecCc--ccchh-hc---hHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFAV-NR---MFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~i~-nr---il~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      +.++++.++.+.++++.+|+.+.+..+.  ..+.. .-   -+..++.|++.  .+..|+++++.-+.+.
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~  207 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTE  207 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8899999999999999999844332321  00000 00   01122344432  3468888877666654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.80  E-value=1.3e-19  Score=176.55  Aligned_cols=212  Identities=10%  Similarity=0.043  Sum_probs=156.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      .+||+|||+|.||..+|..|+.+|++ |.+||++++.++...+.          .|             +..++++ +.+
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~   66 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK----------VE-------------AEYTTDLAEVN   66 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH----------TT-------------CEEESCGGGSC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH----------cC-------------CceeCCHHHHh
Confidence            36899999999999999999999999 99999999887654321          01             2234455 446


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC-----CCCeEEEEe
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-----VMPLLEIVR  299 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~-----~~~lveiv~  299 (496)
                      ++||+||+|+|++. + .+++.++.+.++++++|++++++++.+.+.+.+..+.   ..|+++|..     .++.+.++.
T Consensus        67 ~~~Dvvi~av~~~~-~-~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~v  141 (266)
T 3d1l_A           67 PYAKLYIVSLKDSA-F-AELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYG---VFYPMQTFSKQREVDFKEIPFFI  141 (266)
T ss_dssp             SCCSEEEECCCHHH-H-HHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSEE---EEEECCCC---CCCCCTTCCEEE
T ss_pred             cCCCEEEEecCHHH-H-HHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhcc---CcCCceecCCCchhhcCCCeEEE
Confidence            89999999999773 3 7888889888889999999999998877666554322   357776532     223333332


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecCc--ccc-----hhhchHH--HHHHHHHHHHHcCCCHHHHHHHH--------H
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-----AVNRMFF--PYTQAAFLLVERGTDLYLIDRAI--------T  362 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~-----i~nril~--~~~~ea~~l~~~g~~~~~ID~a~--------~  362 (496)
                       ..++++..+.+.++++.+|+.++++++.  +++     ++|++..  ..+.|++. .+.|++++++..++        +
T Consensus       142 -~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~  219 (266)
T 3d1l_A          142 -EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHE  219 (266)
T ss_dssp             -EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHH
T ss_pred             -ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHh
Confidence             2368999999999999999999999853  355     6777763  33556532 46899888884444        3


Q ss_pred             -hc-CCCcchhHhhhccCchhHHHhhhh
Q 010966          363 -KF-GMPMGPFRLADLVGFGVAIATGMQ  388 (496)
Q Consensus       363 -~~-g~p~GPf~l~D~~Gld~~~~~~~~  388 (496)
                       +. +.++||+...|..|++..+..++.
T Consensus       220 ~~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          220 LEPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             SCHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             cChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence             32 457899999999999998887754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.77  E-value=6.8e-18  Score=162.74  Aligned_cols=190  Identities=18%  Similarity=0.214  Sum_probs=144.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (496)
                      ++||+|||+|.||.+|+..|+++|+    +|++||+++++++...+.          .|             +..+++. 
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~   58 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------YG-------------LTTTTDNN   58 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------HC-------------CEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------hC-------------CEEeCChH
Confidence            3689999999999999999999998    999999999987764321          12             2234444 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCC-eEEEEeC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRT  300 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~-lveiv~~  300 (496)
                      +.+++||+||.|+|.  ....+++.++.+.++++++++|.+++++++.+.+.+..+.++++.||++|+.... .+.++++
T Consensus        59 e~~~~aDvVilav~~--~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  136 (247)
T 3gt0_A           59 EVAKNADILILSIKP--DLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPN  136 (247)
T ss_dssp             HHHHHCSEEEECSCT--TTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHHhCCEEEEEeCH--HHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeC
Confidence            457889999999964  4577888999988899999999999999999998887778999999999998877 6778888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCceEEecCcc-cchh--h---chHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCT-GFAV--N---RMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-G~i~--n---ril~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      +.++++.++.+.++++.+|+ ++++.+.. ..+.  .   ..+..++.|++.  .+..|+++++..+++.
T Consensus       137 ~~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~  205 (247)
T 3gt0_A          137 EMVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAA  205 (247)
T ss_dssp             TTCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            88999999999999999998 55554311 0000  0   111223455554  3468999988888776

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.75  E-value=4.5e-17  Score=162.41  Aligned_cols=164  Identities=14%  Similarity=0.152  Sum_probs=129.7

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (496)
                      .++||+|||+|.||++||..|.++|+  +|++||++++.++.+.           +.|.+.           ..+++++ 
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~~   89 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAK   89 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTTG
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHHH
Confidence            46899999999999999999999999  9999999998876643           234221           1234544 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCC---------
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH---------  290 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~---------  290 (496)
                       .+++||+||+|||.+.  ..+++.++.+.++++++|++++|+..  ++.+.+.++  .+|++.||+.+..         
T Consensus        90 ~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~  165 (314)
T 3ggo_A           90 VEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD  165 (314)
T ss_dssp             GGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred             HhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence             5889999999999764  56788999999999999998877653  556666653  3899999998643         


Q ss_pred             ---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccchhhc
Q 010966          291 ---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNR  335 (496)
Q Consensus       291 ---~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nr  335 (496)
                         .+..+.+++++.++++.++.+.++++.+|+.++.++. ..+.++..
T Consensus       166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~  214 (314)
T 3ggo_A          166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGV  214 (314)
T ss_dssp             TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHH
T ss_pred             hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence               2467888899899999999999999999999998863 34444443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.72  E-value=6.5e-17  Score=160.04  Aligned_cols=187  Identities=18%  Similarity=0.241  Sum_probs=137.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      |+||+|||+|.||.+||.+|+++||+|++||+++++++...           +.|.             +...+. +.++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~a~s~~e~~~   58 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA-------------SAARSARDAVQ   58 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EECSSHHHHHT
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcCC-------------EEcCCHHHHHh
Confidence            78999999999999999999999999999999999877643           3332             233444 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCCC-------C
Q 010966          226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV-------M  292 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~~-------~  292 (496)
                      +||+||.|+|.+..++..++..  +.+.++++.+++.. ||.++   .++++.+..    .|.||. .|+..       .
T Consensus        59 ~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~-sT~~p~~~~~~a~~~~~----~G~~~lDaPVsGg~~~A~~G  133 (300)
T 3obb_A           59 GADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLEC-STIAPTSARKIHAAARE----RGLAMLDAPVSGGTAGAAAG  133 (300)
T ss_dssp             TCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEEC-SCCCHHHHHHHHHHHHT----TTCEEEECCEESCHHHHHHT
T ss_pred             cCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCEEEecCCCCCHHHHHhC
Confidence            9999999999887765544432  56667788877643 34443   356666542    266776 46544       3


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-  362 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-  362 (496)
                      .|.-++.|   +++.+++++++++.+|+..+++++ ..|.   ++|+++..    .+.|++.+.+ .|++++.+-+++. 
T Consensus       134 ~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~  210 (300)
T 3obb_A          134 TLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRR  210 (300)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred             CEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            46666666   789999999999999999999986 3343   56666653    3688888865 7999999999998 


Q ss_pred             hcC
Q 010966          363 KFG  365 (496)
Q Consensus       363 ~~g  365 (496)
                      +.+
T Consensus       211 ~~~  213 (300)
T 3obb_A          211 SSG  213 (300)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.70  E-value=3.7e-16  Score=155.13  Aligned_cols=192  Identities=15%  Similarity=0.169  Sum_probs=135.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      .+||+|||+|.||.+||..|+++|++|++||++++.++...           +.|.            ...+++. +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~e~~~   63 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLL-----------AEGA------------CGAAASAREFAG   63 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC------------SEEESSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HcCC------------ccccCCHHHHHh
Confidence            46999999999999999999999999999999999877643           2231            1113444 4578


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcccH--HHHHhhhcC-CCeeeeccccCc-C---CCCCeEE
Q 010966          226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSP-A---HVMPLLE  296 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~~--~~la~~~~~-~~r~ig~hf~~P-~---~~~~lve  296 (496)
                      +||+||.|+|++..++..++  +++.+.++++++|++.++..+.  .++.+.+.. ...|+. ||... +   ....++.
T Consensus        64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  142 (303)
T 3g0o_A           64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTV  142 (303)
T ss_dssp             TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEE
Confidence            99999999998766654443  5677888888888755443332  345554432 234444 43321 1   1234555


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc--c---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      ++.+   +++.++.++++++.+|+.++++++.+|  .   ++|+++.    ..++|++.+.+ .|++++++..++. +.+
T Consensus       143 ~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  219 (303)
T 3g0o_A          143 MASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG  219 (303)
T ss_dssp             EEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred             EeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            5554   689999999999999999999986344  2   3455543    34789988765 6899999999998 543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.69  E-value=1.9e-17  Score=162.35  Aligned_cols=209  Identities=10%  Similarity=0.016  Sum_probs=140.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (496)
                      ++||+|||+|.||.+|+..|+.+ ++| .+||++++.++...+.          .|            .  .+++++ .+
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------~g------------~--~~~~~~~~~   56 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------YG------------G--KAATLEKHP   56 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------TC------------C--CCCSSCCCC
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------cC------------C--ccCCHHHHH
Confidence            35899999999999999999888 999 5999999877654321          11            1  234444 46


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeecccc----C-cCCCC---CeEE
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF----S-PAHVM---PLLE  296 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~----~-P~~~~---~lve  296 (496)
                      ++||+||+|+|++.  ..+++.++.   .++++|++.+++++.+.+...     .+.+.|+.    + |....   .+..
T Consensus        57 ~~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~  126 (276)
T 2i76_A           57 ELNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVF  126 (276)
T ss_dssp             C---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCE
T ss_pred             hcCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeE
Confidence            88999999999875  556766654   677888876666676655432     35566743    3 22211   1222


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecCc--cc-----chhhchHHHHHHHHHHHHH-cCCC-H---------HHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--TG-----FAVNRMFFPYTQAAFLLVE-RGTD-L---------YLID  358 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G-----~i~nril~~~~~ea~~l~~-~g~~-~---------~~ID  358 (496)
                      .+.+   +++..+.+.++++.+|+.++.+++.  +.     -+.++.+..++.++..+.. .|++ .         ..+|
T Consensus       127 ~~~~---~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~  203 (276)
T 2i76_A          127 GLEG---DERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVAD  203 (276)
T ss_dssp             EECC---CTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred             EEEe---ChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            2333   4566899999999999989998742  11     2445577777888887776 7984 4         5788


Q ss_pred             HHHH-h-cCCCcchhHhhhccCchhHHHhhhhhhhhC
Q 010966          359 RAIT-K-FGMPMGPFRLADLVGFGVAIATGMQFIENF  393 (496)
Q Consensus       359 ~a~~-~-~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~  393 (496)
                      .+++ + .+.++||++..|..+++..++.++.+.+.+
T Consensus       204 ~~~~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          204 NIKKMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             HHHHSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence            8887 6 678899999999999999999998874443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.69  E-value=4e-16  Score=153.68  Aligned_cols=190  Identities=16%  Similarity=0.103  Sum_probs=135.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||+|||+|.||.++|..|+++|++|++||++++.++...+           .|             +..++++ +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------LG-------------AERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhc
Confidence            58999999999999999999999999999999988766431           12             3344555 44688


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcccH--HHHHhhhc-CCCeeeeccccCc-C---CCCCeEEE
Q 010966          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSP-A---HVMPLLEI  297 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~~--~~la~~~~-~~~r~ig~hf~~P-~---~~~~lvei  297 (496)
                      ||+||.|+|++..++..++  .++.+.++++++|++.++..+.  .++.+.+. ...+|+. ||+.+ +   ....++.+
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~  136 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIIL  136 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEE
Confidence            9999999998766665444  7788888888888765433322  24444442 2234444 33321 1   12345666


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      +.+   +++.++.+.++++.+|+.++++++ ..+.   ++|+++..    .++|++.+.+ .|++++++..++. +.+
T Consensus       137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~  211 (287)
T 3pef_A          137 AAG---DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAM  211 (287)
T ss_dssp             EEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred             EeC---CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            665   688999999999999999999975 2333   45665543    5789998875 6899999999998 543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.68  E-value=2.1e-16  Score=157.60  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=128.3

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (496)
                      .++||+|||+|.||.+||..|+++|+ +|++||++  ++..+...           +.|             +..+++. 
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~g-------------~~~~~~~~   78 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------ELG-------------VSCKASVA   78 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HTT-------------CEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HCC-------------CEEeCCHH
Confidence            46799999999999999999999999 99999997  45544321           122             2334454 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH--HHHhhhcCCCeeeeccccCcC-------CCC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPA-------HVM  292 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~--~la~~~~~~~r~ig~hf~~P~-------~~~  292 (496)
                      +.+++||+||.|||.+...  +++.++.+.++++++|++.+|..+..  ++.+.+.  +++.|.||++++       ...
T Consensus        79 e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~--~~~~g~~~vd~pv~g~~~~~~g  154 (312)
T 3qsg_A           79 EVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVIS--RHRPSAQYAAVAVMSAVKPHGH  154 (312)
T ss_dssp             HHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHH--HHCTTCEEEEEEECSCSTTTGG
T ss_pred             HHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHH--hhcCCCeEEeccccCCchhhcC
Confidence            4578999999999988755  46788999999999888766554432  4444432  222355554321       113


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc-----hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~-----i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      .+..++.++.+     +.+.++++.+|+.++++++.+|.     ++|+++.    ..++|++.+.+ .|++++-++ .+.
T Consensus       155 ~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~  228 (312)
T 3qsg_A          155 RVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLD  228 (312)
T ss_dssp             GSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHH
T ss_pred             CEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHH
Confidence            57777777543     78899999999999999864453     4566555    45789988765 689885554 555


Q ss_pred             -hc
Q 010966          363 -KF  364 (496)
Q Consensus       363 -~~  364 (496)
                       ++
T Consensus       229 ~~~  231 (312)
T 3qsg_A          229 ASF  231 (312)
T ss_dssp             HHS
T ss_pred             hcC
Confidence             44

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.68  E-value=3.2e-16  Score=155.04  Aligned_cols=186  Identities=19%  Similarity=0.200  Sum_probs=129.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||+|||+|.||.+||.+|+++||+|++||+++++.+...           +.|             .+...+. +.+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLT-----------KLG-------------ATVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTT-----------TTT-------------CEECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeEeCCHHHHHhc
Confidence            5899999999999999999999999999999998765421           222             2233444 56789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCCC-------CCeE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV-------MPLL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~~-------~~lv  295 (496)
                      ||+||.|+|.+..+...+...+.+.+.++.+++.. |+.++   .++++.+..    .|.+|. .|+..       ..+.
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~-sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~~~a~~g~l~  136 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSM-STISPETSRQLAQVHEW----YGAHYVGAPIFARPEAVRAKVGN  136 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEEC-SCCCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHTCCE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEEC-CCCChHHHHHHHHHHHh----cCCceecCCcCCCccccccccce
Confidence            99999999988777666667788888888877643 33333   355555532    255565 35433       3444


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc--c---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hc
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KF  364 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-~~  364 (496)
                      -++.+   +++.++.++++++.+|+..+++++.+|  .   ++|+++..    .+.|++.+.+ .|++++.+-+++. +.
T Consensus       137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~  213 (297)
T 4gbj_A          137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTL  213 (297)
T ss_dssp             EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred             eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence            45555   789999999999999999999986444  2   56766653    3689988864 7999999999987 54


Q ss_pred             C
Q 010966          365 G  365 (496)
Q Consensus       365 g  365 (496)
                      +
T Consensus       214 ~  214 (297)
T 4gbj_A          214 F  214 (297)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.68  E-value=3.4e-16  Score=155.92  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=135.1

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      ..++||+|||+|.||.+||..|+.+|++|++||++++.++...           +.|             +..+++. +.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~~~   74 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-----------EHG-------------ASVCESPAEV   74 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-----------HTT-------------CEECSSHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeEcCCHHHH
Confidence            3578999999999999999999999999999999998776542           122             2334454 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcccH--HHHHhhhc-CCCeeeeccccC--c--CCCCCe
Q 010966          224 FKDVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFS--P--AHVMPL  294 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~~--~~la~~~~-~~~r~ig~hf~~--P--~~~~~l  294 (496)
                      +++||+||.|+|++..++..++  .++.+.++++++|++.++..+.  .++.+.+. ...+|+. ||..  |  .....+
T Consensus        75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l  153 (310)
T 3doj_A           75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQL  153 (310)
T ss_dssp             HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCE
T ss_pred             HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCe
Confidence            7899999999998766664443  6677788888888765443322  24444442 2223433 2321  1  112456


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc--c---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH-h
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-K  363 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~-~  363 (496)
                      +.++.+   +++.++.+.++++.+|+.++++++ +|  .   ++|+++.    ..++|++.+.+ .|++++++..++. +
T Consensus       154 ~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~  229 (310)
T 3doj_A          154 IILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLG  229 (310)
T ss_dssp             EEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             EEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            666666   588999999999999999999976 34  2   3444443    34789998875 6899999999998 5


Q ss_pred             cC
Q 010966          364 FG  365 (496)
Q Consensus       364 ~g  365 (496)
                      .+
T Consensus       230 ~~  231 (310)
T 3doj_A          230 AM  231 (310)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.67  E-value=8.3e-16  Score=152.11  Aligned_cols=187  Identities=19%  Similarity=0.178  Sum_probs=132.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (496)
                      .+||+|||+|.||.++|..|+++|++|++||++++.++...+           .|             ++.++++++ ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   70 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------AG-------------ATLADSVADVAA   70 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------TT-------------CEECSSHHHHTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CEEcCCHHHHHh
Confidence            358999999999999999999999999999999987765431           12             334556654 56


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhcC-CCeeeeccccCcC---CCCCeEEEEe
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA---HVMPLLEIVR  299 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~~-~~r~ig~hf~~P~---~~~~lveiv~  299 (496)
                       ||+||.|+|++..++ +++.++.+.++++++|++.+++.+.  .++.+.+.. ..+|+....+.++   ....++.++.
T Consensus        71 -aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g  148 (296)
T 3qha_A           71 -ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVG  148 (296)
T ss_dssp             -SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEE
T ss_pred             -CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEec
Confidence             999999999876654 4568888888899888765444332  345555532 2233332112111   1245666666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHH------HHHHH
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLI------DRAIT  362 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~----~~~ea~~l~~-~g~~~~~I------D~a~~  362 (496)
                      +   +++.++.+.++++.+|+.++++++ ..|.   ++|+++..    .++|++.+.+ .|++++++      .+++.
T Consensus       149 g---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~  223 (296)
T 3qha_A          149 A---DREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALT  223 (296)
T ss_dssp             C---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHh
Confidence            6   689999999999999999999976 2232   44555443    4789998875 68899999      88887

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.67  E-value=8.8e-16  Score=151.15  Aligned_cols=189  Identities=16%  Similarity=0.086  Sum_probs=136.9

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |+||+|||+ |.||.++|..|+.+|++|++||++++.++...+           .|             +..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence            579999999 999999999999999999999999987765321           12             11223345678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC--------CCC----
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMP----  293 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--------~~~----  293 (496)
                      +||+||+|+|.+.  ..+++.++.+.++++++|++.+++.+++.+.+ .....++++.||+.|..        ...    
T Consensus        67 ~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~  143 (286)
T 3c24_A           67 EADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG  143 (286)
T ss_dssp             TCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred             CCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence            9999999999765  57888999988999999998777777776664 33346899999998765        222    


Q ss_pred             ----eEEEEeCCCCCHHHHHHHHHHHHHcCC---ceEEecC-cccch----hhchHHHH---HHHHHHH-H-HcCCCHHH
Q 010966          294 ----LLEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLL-V-ERGTDLYL  356 (496)
Q Consensus       294 ----lveiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~G~i----~nril~~~---~~ea~~l-~-~~g~~~~~  356 (496)
                          ...++....++++..+.+.++++.+|+   .++.+++ ..+.+    .|-...++   +.|++.. . ..|+++++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~  223 (286)
T 3c24_A          144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA  223 (286)
T ss_dssp             SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                233433334688999999999999999   7888863 22322    34444444   3454443 2 34998887


Q ss_pred             HHHHHH
Q 010966          357 IDRAIT  362 (496)
Q Consensus       357 ID~a~~  362 (496)
                      +-+.+.
T Consensus       224 ~~~~~~  229 (286)
T 3c24_A          224 ALDFMI  229 (286)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776665

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.66  E-value=7.9e-16  Score=151.53  Aligned_cols=192  Identities=15%  Similarity=0.112  Sum_probs=132.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      |+||+|||+|.||.++|..|+++|++|++||++++.++...+           .|             +..+++. +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------LG-------------ARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------HT-------------CEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHH
Confidence            468999999999999999999999999999999988766432           12             2334454 4468


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcccH--HHHHhhhc-CCCeeeeccccCcCC---CCCeEEE
Q 010966          226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSPAH---VMPLLEI  297 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~~--~~la~~~~-~~~r~ig~hf~~P~~---~~~lvei  297 (496)
                      +||+||.|+|++..++..++  .++.+.+++++++++.+++.+.  .++.+.+. +..+|+....+.++.   ...++.+
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~  136 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIIL  136 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEE
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEE
Confidence            89999999998766655443  5677778888877754443322  24444442 222333322121111   1234555


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      +.+   +++.++.+.++++.+|+.++++++ ..|.   ++|+.+.    ..++|++.+.+ .|++++++..++. +.+
T Consensus       137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~  211 (287)
T 3pdu_A          137 AAG---DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAM  211 (287)
T ss_dssp             EEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred             EeC---CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            554   689999999999999999999976 2333   3444443    34789988765 6899999999998 543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.64  E-value=4.6e-15  Score=148.54  Aligned_cols=190  Identities=13%  Similarity=0.095  Sum_probs=136.4

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      .++||+|||+|.||.+||..|+++|    ++|++||++++  .++...           +.|             +..++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~   76 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTP   76 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeC
Confidence            3468999999999999999999999    89999999985  554431           112             22333


Q ss_pred             Cc-ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcC---CCeeeeccccCcCCCCCeE
Q 010966          220 DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS---KDRIVGAHFFSPAHVMPLL  295 (496)
Q Consensus       220 ~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~---~~r~ig~hf~~P~~~~~lv  295 (496)
                      +. +.+++||+||.|||.  ....+++.++.+.++++++|++.+++++++.+.+.+..   ..++++.|++.|.......
T Consensus        77 ~~~e~~~~aDvVilav~~--~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~  154 (322)
T 2izz_A           77 HNKETVQHSDVLFLAVKP--HIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA  154 (322)
T ss_dssp             CHHHHHHHCSEEEECSCG--GGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred             ChHHHhccCCEEEEEeCH--HHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence            33 457889999999984  45678889999888899999998888988887776643   4589999999988776555


Q ss_pred             EEE-eCCCCCHHHHHHHHHHHHHcCCceEEecCccc----c--hhhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          296 EIV-RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG----F--AVNRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       296 eiv-~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G----~--i~nril~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      .++ .++.++++..+.+.++++.+|+.+.+..+.-.    .  ..+.++. .+.|++.  ....|+++++.-..+.
T Consensus       155 ~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~~  229 (322)
T 2izz_A          155 TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLGA  229 (322)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            544 67777899999999999999986544322111    0  1122222 2344433  3456998877766665

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.64  E-value=5e-15  Score=148.13  Aligned_cols=192  Identities=19%  Similarity=0.188  Sum_probs=132.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      .++||+|||+|.||..+|..|+++|++|++||++++.++...           +.|             +..++++ +.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~e~~   85 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-----------ALG-------------ATIHEQARAAA   85 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CEEESSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HCC-------------CEeeCCHHHHH
Confidence            357999999999999999999999999999999999876642           112             3345555 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCCcccH--HHHHhhhc-CCCeeeeccccCcC---CCCCeEEE
Q 010966          225 KDVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSPA---HVMPLLEI  297 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~~~~--~~la~~~~-~~~r~ig~hf~~P~---~~~~lvei  297 (496)
                      ++||+||+|+|++..++..+.. ++.+.++++++|++.+++.+.  .++.+.+. ...+|+....+.++   ....+..+
T Consensus        86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~  165 (320)
T 4dll_A           86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIM  165 (320)
T ss_dssp             TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEE
T ss_pred             hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEE
Confidence            8999999999987666544332 666778888877655443332  34554442 22233332111111   12456666


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~-~~g  365 (496)
                      +.+   ++++++.+.++++.+ +.++++++ ..|.   ++|+++.    ..++|++.+.+ .|++++++..++. +.+
T Consensus       166 ~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  239 (320)
T 4dll_A          166 AGG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFA  239 (320)
T ss_dssp             EES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTT
T ss_pred             eCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence            665   689999999999999 88888875 3343   4455443    34799998875 6899999999997 544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.64  E-value=8.4e-16  Score=145.21  Aligned_cols=158  Identities=9%  Similarity=0.030  Sum_probs=125.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +.+||+|||+|.||+++|..|.++|++|++||+.                                          ++++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~   42 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIR   42 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhc
Confidence            3469999999999999999999999999999982                                          1145


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~  305 (496)
                      +||  |.|||.+  ...+++.++.+.+++++++++.+++.+.+-+........+|++.||+...     ..++..  .++
T Consensus        43 ~aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a--~d~  111 (232)
T 3dfu_A           43 DFE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASA--LDE  111 (232)
T ss_dssp             GCS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEE--SSH
T ss_pred             cCC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeC--CCH
Confidence            788  9999987  34678889998899999998766666555444444566789999988532     123322  278


Q ss_pred             HHHHHHHHHHHHcCCceEEecC--cccc----hhhchHHHHHHHHHHHH---HcCC-CHHH
Q 010966          306 QVIVDLLDIGKKIKKTPIVVGN--CTGF----AVNRMFFPYTQAAFLLV---ERGT-DLYL  356 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~v~v~d--~~G~----i~nril~~~~~ea~~l~---~~g~-~~~~  356 (496)
                      +.++.+..+++.+|..++.+++  .+++    ..++.+.+++++|.+++   ++|+ +++|
T Consensus       112 ~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d  172 (232)
T 3dfu_A          112 LGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD  172 (232)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence            8999999999999999999963  4566    55788888999999998   7898 8888

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.62  E-value=1.5e-14  Score=140.24  Aligned_cols=182  Identities=16%  Similarity=0.126  Sum_probs=129.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      +||+|||+|.||..+|..|+++| ++|++||++++.++...+.          .|             +..+++. +.+ 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence            48999999999999999999999 9999999999887654321          12             2233444 457 


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCC-eEEEEeCCCCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS  304 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~-lveiv~~~~t~  304 (496)
                      ++|+||.|+|  .....+++.++.+  + +++|++.+|+++++.+.+.++.+.++++.++..|..... ...++.+..++
T Consensus        57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999999  3344566666544  4 889999989999988888876656788886655665544 45677787789


Q ss_pred             HHHHHHHHHHHHHcCCceEEec-Cc--------ccchhhchHHHHH---HHHHHHHHcCCCHHHHHHHHH
Q 010966          305 PQVIVDLLDIGKKIKKTPIVVG-NC--------TGFAVNRMFFPYT---QAAFLLVERGTDLYLIDRAIT  362 (496)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~v~v~-d~--------~G~i~nril~~~~---~ea~~l~~~g~~~~~ID~a~~  362 (496)
                      ++.++.+.++++.+|+.+ .++ +.        .|. .+..+..++   .|+  ....|++++++...+.
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g~-~~~~~~~~~~~l~e~--~~~~G~~~~~~~~~~~  197 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISGS-GPAYVFYLLDALQNA--AIRQGFDMAEARALSL  197 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTTS-HHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHcc-HHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Confidence            999999999999999876 665 31        110 111122222   222  3457888888777765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.59  E-value=3e-14  Score=141.60  Aligned_cols=188  Identities=12%  Similarity=0.079  Sum_probs=129.4

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      .++||+|||+|.||.+||..|+++|++|++||++++.++...+           .|             +...++. +.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~   63 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAAL   63 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHH
Confidence            3579999999999999999999999999999999998776431           12             1233444 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCccc--HHHHHhhhc-CCCeeeeccccC-cCCC--CCeEE
Q 010966          225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTID--LNLIGERTY-SKDRIVGAHFFS-PAHV--MPLLE  296 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~--~~~la~~~~-~~~r~ig~hf~~-P~~~--~~lve  296 (496)
                      ++||+||.|+|++..++. ++.  .+... .++++|++.+++.+  ..++.+.+. ...+|+....+. |+..  ..++.
T Consensus        64 ~~aDvVi~~vp~~~~~~~-v~~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i  141 (306)
T 3l6d_A           64 SASPATIFVLLDNHATHE-VLGMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS  141 (306)
T ss_dssp             HHSSEEEECCSSHHHHHH-HHTSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred             hcCCEEEEEeCCHHHHHH-Hhcccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence            889999999998765554 444  56554 56666654433322  235555442 223454432222 1111  23454


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEe--cC--cccchhhchHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVV--GN--CTGFAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v--~d--~~G~i~nril~---~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      ++.+   ++++++.++++++.+|..++++  ++  ..|+.++.++.   ..++|++.+.+ .|++++++.+++.
T Consensus       142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~  212 (306)
T 3l6d_A          142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLL  212 (306)
T ss_dssp             EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5555   6899999999999998899999  74  56677773332   34688888765 6899999999987

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.59  E-value=2.4e-14  Score=150.56  Aligned_cols=202  Identities=13%  Similarity=0.142  Sum_probs=140.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcceecccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~  220 (496)
                      -+||+|||+|.||.++|..|+++|++|++||++++.++...+..          -.+........      ..+++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~----------~~i~e~gl~~~l~~~~~~~~l~~ttd   77 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGG----------VPIHEPGLKEVIARNRSAGRLRFSTD   77 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEECC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCC----------CCcCCCCHHHHHHHhcccCCEEEECC
Confidence            36999999999999999999999999999999999887654210          00000011111      246778888


Q ss_pred             c-ccccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhc----CC---Ceee
Q 010966          221 Y-ESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTY----SK---DRIV  281 (496)
Q Consensus       221 ~-~~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~----~~---~r~i  281 (496)
                      + +.+++||+||.|||.        |+....++++++.++++++++|++ .||+++   ..+.+.+.    .+   ..+ 
T Consensus        78 ~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~-  155 (478)
T 2y0c_A           78 IEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF-  155 (478)
T ss_dssp             HHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE-
T ss_pred             HHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE-
Confidence            7 468899999999998        447788899999999999998864 456654   23333221    11   112 


Q ss_pred             eccccCcCCCCCeE---------EEEeCCCCCH----HHHHHHHHHHHHcCC--ceEEecCc-----ccchhhchH---H
Q 010966          282 GAHFFSPAHVMPLL---------EIVRTNQTSP----QVIVDLLDIGKKIKK--TPIVVGNC-----TGFAVNRMF---F  338 (496)
Q Consensus       282 g~hf~~P~~~~~lv---------eiv~~~~t~~----e~~~~~~~l~~~lGk--~~v~v~d~-----~G~i~nril---~  338 (496)
                       .+.++|....+..         .++.|.. ++    +..+.+.++++.+++  .++++.|.     ..++.|.++   .
T Consensus       156 -~v~~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~i  233 (478)
T 2y0c_A          156 -SVVSNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRI  233 (478)
T ss_dssp             -EEEECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHH
Confidence             2456776554433         3454432 34    788999999998875  57777652     234556555   3


Q ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          339 PYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       339 ~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      .+++|+..+.+ .|++++++..++.
T Consensus       234 a~~nE~~~la~~~Gid~~~v~~~i~  258 (478)
T 2y0c_A          234 SFMNELANLADRFGADIEAVRRGIG  258 (478)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            56899999875 6899999998885

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.59  E-value=5.4e-14  Score=140.36  Aligned_cols=194  Identities=14%  Similarity=0.110  Sum_probs=128.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~  223 (496)
                      +++||+|||+|.||.++|..|+++| ++|++||++++..++..+..    +...+.|             + .+ +..+.
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g-------------~-~~~s~~e~   84 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELG-------------V-EPLDDVAG   84 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTT-------------C-EEESSGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCC-------------C-CCCCHHHH
Confidence            3579999999999999999999999 99999999983211111110    1111222             1 23 33456


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCcC--CCCCeEEEE
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPA--HVMPLLEIV  298 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P~--~~~~lveiv  298 (496)
                      +++||+||.|||.+...+  .+.++.+.++++++|++.++..+  ..++.+.+.. ..+|+....+.|.  ....+..++
T Consensus        85 ~~~aDvVi~avp~~~~~~--~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~v  162 (317)
T 4ezb_A           85 IACADVVLSLVVGAATKA--VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILV  162 (317)
T ss_dssp             GGGCSEEEECCCGGGHHH--HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEE
T ss_pred             HhcCCEEEEecCCHHHHH--HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEE
Confidence            789999999999886543  45888888889998876554333  2355555532 2334432222232  234566677


Q ss_pred             eCCCCCHHHHHHHHHHHHHcCCceEEecCcccc-----hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHHhc
Q 010966          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAITKF  364 (496)
Q Consensus       299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~-----i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~~~  364 (496)
                      .++..     +.+.++++.+|+.++++++.+|.     ++|+++.    ..++|++.+.+ .|++++.++.+..+.
T Consensus       163 gg~~~-----~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~  233 (317)
T 4ezb_A          163 AGRRA-----VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF  233 (317)
T ss_dssp             ESTTH-----HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             eCChH-----HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            77432     78899999999999999864453     4555543    45799998875 789887666655543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.57  E-value=3.5e-15  Score=156.46  Aligned_cols=107  Identities=17%  Similarity=0.230  Sum_probs=97.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhh
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLAD  375 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D  375 (496)
                      .+++++.+.+.++.+.+|+.++.+  .+|+++||++.++++||++++++|+  +++|||.+|+ |+|||+   |||+++|
T Consensus       331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D  408 (463)
T 1zcj_A          331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA  408 (463)
T ss_dssp             EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence            468999999888888888766654  3799999999999999999999998  5999999999 999998   9999999


Q ss_pred             ccCchhHHHhhhhhhhhCCC--CccccchHHHHHhcC
Q 010966          376 LVGFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDK  410 (496)
Q Consensus       376 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~G  410 (496)
                      .+|+|+++++++.+++.+++  ++.|+++|++|+++|
T Consensus       409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G  445 (463)
T 1zcj_A          409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG  445 (463)
T ss_dssp             HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTT
T ss_pred             HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcC
Confidence            99999999999999999998  577999999999997

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.57  E-value=3e-14  Score=140.31  Aligned_cols=158  Identities=16%  Similarity=0.184  Sum_probs=121.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      .++||+|||+|.||.++|..|+.+  |++|++||++++.++...           +.|...           ..++++ +
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~   62 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFKV   62 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTTT
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHHH
Confidence            467999999999999999999987  689999999998776532           123210           223454 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEeccCCccc--HHHHHhhhcC-CCeeeecccc------CcCC--
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF------SPAH--  290 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~------~P~~--  290 (496)
                      .+++||+||.|+|.+.  ..+++.++.+. ++++++|++.+++..  .+.+.+.+.. ..++++.||+      .|..  
T Consensus        63 ~~~~aDvVilavp~~~--~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~  140 (290)
T 3b1f_A           63 FAALADVIILAVPIKK--TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAAN  140 (290)
T ss_dssp             TGGGCSEEEECSCHHH--HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCC
T ss_pred             hhcCCCEEEEcCCHHH--HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhh
Confidence            5789999999999664  36788889888 888998876544332  3566666654 6789999998      4443  


Q ss_pred             ----CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          291 ----VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       291 ----~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                          ....+.++++..++++..+.+.++++.+|+.++.+.+
T Consensus       141 ~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          141 VNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             TTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             HHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                2456788888888999999999999999998888763

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=1.6e-14  Score=145.12  Aligned_cols=152  Identities=14%  Similarity=0.195  Sum_probs=115.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc-
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF-  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-  224 (496)
                      ++||+|||+|.||++||..|.++|++|++||++++.++.+.           +.|.             ..+++.+ .+ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~G~-------------~~~~~~~e~~~   63 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV-----------DEGF-------------DVSADLEATLQ   63 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH-----------HTTC-------------CEESCHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------eeeCCHHHHHH
Confidence            57899999999999999999999999999999998876643           2231             1233332 23 


Q ss_pred             ---cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCCC--------
Q 010966          225 ---KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------  291 (496)
Q Consensus       225 ---~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~~--------  291 (496)
                         ++||+||.|||.  .....+++++.++ +++++|++.+|+.  .++.+.+.+. ..+|++.||+.....        
T Consensus        64 ~a~~~aDlVilavP~--~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~  139 (341)
T 3ktd_A           64 RAAAEDALIVLAVPM--TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMD  139 (341)
T ss_dssp             HHHHTTCEEEECSCH--HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCS
T ss_pred             hcccCCCEEEEeCCH--HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhh
Confidence               358999999994  4567888898887 8889887665553  2345555443 468999999875431        


Q ss_pred             ----CCeEEEEeCCCCCHH--------HHHHHHHHHHHcCCceEEec
Q 010966          292 ----MPLLEIVRTNQTSPQ--------VIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       292 ----~~lveiv~~~~t~~e--------~~~~~~~l~~~lGk~~v~v~  326 (496)
                          ...+.+++++.++++        .++.+.++++.+|..++.+.
T Consensus       140 ~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~  186 (341)
T 3ktd_A          140 GLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR  186 (341)
T ss_dssp             STTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             HHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence                234667788888888        89999999999999999886

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=144.68  Aligned_cols=188  Identities=16%  Similarity=0.163  Sum_probs=134.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++||+|||+|.||..+|..|+..|++|++||++++.++...           +.|             +...++. +.++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~   85 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-----------QEG-------------ARLGRTPAEVVS   85 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-----------HTT-------------CEECSCHHHHHH
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HcC-------------CEEcCCHHHHHh
Confidence            57899999999999999999999999999999988766532           112             1123344 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHH---HhhCCCCeeEeccCCc--ccHHHHHhhhc-CCCeeeeccccCc---CCCCCeEE
Q 010966          226 DVDMVIEAIIENVSLKQQIFADL---EKYCPPHCILASNTST--IDLNLIGERTY-SKDRIVGAHFFSP---AHVMPLLE  296 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l---~~~~~~~~il~sntS~--~~~~~la~~~~-~~~r~ig~hf~~P---~~~~~lve  296 (496)
                      ++|+||+|+|+...++. ++.++   .+.+.++++|++.+++  ....++.+.+. .+.++++.+++++   +....++.
T Consensus        86 ~~DvVi~av~~~~~~~~-v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~  164 (316)
T 2uyy_A           86 TCDITFACVSDPKAAKD-LVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVI  164 (316)
T ss_dssp             HCSEEEECCSSHHHHHH-HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             cCCEEEEeCCCHHHHHH-HHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEE
Confidence            89999999997666554 44433   3567778777644333  33556776663 4668888877643   23356677


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecC-ccc----chhhch---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG----FAVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G----~i~nri---l~~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      ++.+   +++.++.+.++++.+|+.++++++ ..+    .+.|.+   +..++.|++.+.+ .|+++++++.++.
T Consensus       165 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~  236 (316)
T 2uyy_A          165 LAAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN  236 (316)
T ss_dssp             EEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EeCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            7666   578999999999999999888865 222    244544   2456799998864 7899999999887

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.57  E-value=3.1e-14  Score=140.90  Aligned_cols=188  Identities=17%  Similarity=0.149  Sum_probs=132.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      .+||+|||+|.||..++..|+..|++|++||++++.++...+           .|             +...+++ +.++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   59 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAA   59 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHh
Confidence            368999999999999999999999999999999987765321           12             2233444 3467


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcc--cHHHHHhhhcC-CCeeeeccccCcCC----CCCeEE
Q 010966          226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFFSPAH----VMPLLE  296 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~--~~~~la~~~~~-~~r~ig~hf~~P~~----~~~lve  296 (496)
                      ++|+||.|+|.+..++..+.  .++.+.++++++|++.+++.  +..++.+.+.. ..++++. +..+..    ...+..
T Consensus        60 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~  138 (301)
T 3cky_A           60 ASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTI  138 (301)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEE
Confidence            89999999998766655443  27778889999998887776  44567666543 2234332 221111    122344


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccch----hhch---HHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA----VNRM---FFPYTQAAFLLV-ERGTDLYLIDRAIT  362 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i----~nri---l~~~~~ea~~l~-~~g~~~~~ID~a~~  362 (496)
                      ++.+   +++.++.+.++++.+|+.++++++ ..|..    .|.+   +...+.|++.+. ..|+++++++..+.
T Consensus       139 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  210 (301)
T 3cky_A          139 MVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIG  210 (301)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4444   788999999999999998888764 34432    3443   234578998876 47899999998887

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.56  E-value=2.4e-14  Score=149.69  Aligned_cols=202  Identities=18%  Similarity=0.210  Sum_probs=137.2

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHH----HHHHHHHHHHHHHHHHHHcCC--C--CHHHHHh-----
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEK----FLEAGIGRVRANLQSRVKKGK--M--TQEKFEK-----  210 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~----~~~~~~~~i~~~~~~~~~~g~--~--~~~~~~~-----  210 (496)
                      +++||+|||+|.||.++|..|+.+ |+ +|++||++++    +++...+            |.  +  .....+.     
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~------------g~~~i~~~e~gl~~l~~~~   84 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNR------------GESPLKGEEPGLEELIGKV   84 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTT------------TCCCSSCCGGGHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHh------------cCCCccccCCCHHHHHHhh
Confidence            468999999999999999999999 99 9999999999    7765432            21  1  1111111     


Q ss_pred             -hhcceecccCcccccCCCEEEEeccCCh----------HHHHHHHHHHHhhCCCCeeEeccCCcccHH---HHHhh-h-
Q 010966          211 -TISLLTGVLDYESFKDVDMVIEAIIENV----------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGER-T-  274 (496)
Q Consensus       211 -~~~~i~~~~~~~~~~~aDlVIeav~e~~----------~~k~~v~~~l~~~~~~~~il~sntS~~~~~---~la~~-~-  274 (496)
                       ..++++++++.+++++||+||+|||++.          .......+.+.++++++++|+ +.||+++.   ++... + 
T Consensus        85 ~~~g~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile  163 (478)
T 3g79_A           85 VKAGKFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILE  163 (478)
T ss_dssp             HHTTCEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHH
T ss_pred             cccCCeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHH
Confidence             1356888888888999999999998763          224456678889999998776 44566542   33321 1 


Q ss_pred             cCCCeeeec--cc-cCcCCCCCe---------EEEEeCCCCCHHHHHHHHHHHHHc-CCceEEecCc-ccc---hhhchH
Q 010966          275 YSKDRIVGA--HF-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGNC-TGF---AVNRMF  337 (496)
Q Consensus       275 ~~~~r~ig~--hf-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d~-~G~---i~nril  337 (496)
                      .....-.+.  ++ ++|....+.         ..|+.|  .+++..+.+.++++.+ ++.++++++. .+.   ++|+++
T Consensus       164 ~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~  241 (478)
T 3g79_A          164 EESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTF  241 (478)
T ss_dssp             HHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHH
T ss_pred             HhcCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHH
Confidence            000000111  11 356543220         124544  3788889999999999 8888888752 232   556666


Q ss_pred             H----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          338 F----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       338 ~----~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      .    +++||++.+.+ .|++++++-+++.
T Consensus       242 ~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~  271 (478)
T 3g79_A          242 RDLQIAAINQLALYCEAMGINVYDVRTGVD  271 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence            4    35799998875 7999999988887

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.56  E-value=8.9e-14  Score=134.60  Aligned_cols=185  Identities=14%  Similarity=0.104  Sum_probs=131.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++||+|||+|.||..++..|...|++|.+||++++.++...+.          .|             +..++++ +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cC-------------CEeeCCHHHHHh
Confidence            4699999999999999999999999999999999887654321          02             1223444 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCC-eEEEEeCCCCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS  304 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~-lveiv~~~~t~  304 (496)
                      ++|+||.|+|..  ...+++.+    +.+++++++.+++++++.+.+.+....+++..|+..|..... .+.++++..++
T Consensus        60 ~~D~Vi~~v~~~--~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIKPQ--LFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSCGG--GHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeCcH--hHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            999999999843  33445444    347788888888999988888776556788888888876654 45677887889


Q ss_pred             HHHHHHHHHHHHHcCCceEEecCc-ccch------hhchHHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010966          305 PQVIVDLLDIGKKIKKTPIVVGNC-TGFA------VNRMFFPYTQAAF--LLVERGTDLYLIDRAIT  362 (496)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~v~v~d~-~G~i------~nril~~~~~ea~--~l~~~g~~~~~ID~a~~  362 (496)
                      ++..+.+.++++.+| .++.+++. ...+      .+..+..++ +++  .....|++++++-.++.
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~-~~la~~~~~~Gl~~~~~~~~~~  198 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFI-EALAKAGVKNGIPKAKALEIVT  198 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999 56777642 1111      112222222 222  24567888887777665

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.56  E-value=1.2e-13  Score=139.74  Aligned_cols=174  Identities=10%  Similarity=0.075  Sum_probs=120.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      .+||+|||+|.||..+|..|+++|++|++||++++.++...           +.|             +..+++++ .++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-----------REG-------------IAGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HCC-------------CEEeCCHHHHHh
Confidence            47999999999999999999999999999999998877642           112             22344543 356


Q ss_pred             CC---CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhc-CCCeeeeccccCcCC---CCCeEE
Q 010966          226 DV---DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSPAH---VMPLLE  296 (496)
Q Consensus       226 ~a---DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~-~~~r~ig~hf~~P~~---~~~lve  296 (496)
                      ++   |+||.|||.+  ...+++.++.+.++++++|++.+++.+.  .++++.+. +..+|+....+.++.   ..+  .
T Consensus        78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--~  153 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--C  153 (358)
T ss_dssp             HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--E
T ss_pred             cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--e
Confidence            67   9999999988  4557788999999999999877666543  35555553 223344332111111   123  3


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcC--------------------CceEEecC-cccch---hhchHH----HHHHHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIK--------------------KTPIVVGN-CTGFA---VNRMFF----PYTQAAFLLV  348 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lG--------------------k~~v~v~d-~~G~i---~nril~----~~~~ea~~l~  348 (496)
                      ++.+  .+++.++.+.++++.+|                    +.++++++ ..|.+   +|+.+.    ..+.|++.+.
T Consensus       154 im~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la  231 (358)
T 4e21_A          154 LMIG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL  231 (358)
T ss_dssp             EEEE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444  37899999999999999                    56788875 45553   344433    2368888888


Q ss_pred             Hc
Q 010966          349 ER  350 (496)
Q Consensus       349 ~~  350 (496)
                      +.
T Consensus       232 ~~  233 (358)
T 4e21_A          232 HH  233 (358)
T ss_dssp             HT
T ss_pred             Hh
Confidence            75

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.55  E-value=2.2e-13  Score=133.22  Aligned_cols=155  Identities=14%  Similarity=0.157  Sum_probs=115.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |||+|||+|.||..+|..|.++|++|++||++++.++...           +.|...           ..++++++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCCc-----------cccCCHHHhCCC
Confidence            4899999999999999999999999999999998776532           123110           123455444899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCc------CC------CCCeE
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP------AH------VMPLL  295 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P------~~------~~~lv  295 (496)
                      |+||.|+|.+  ...+++.++.+.++++++|++. ++.+...+........++++.||+..      .+      ....+
T Consensus        59 D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~  135 (279)
T 2f1k_A           59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (279)
T ss_dssp             SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             CEEEEECCHH--HHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence            9999999854  5678888998889889988765 44544333222222237999998752      11      23467


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      .+++++.++++..+.+.++++.+|..++++++
T Consensus       136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  167 (279)
T 2f1k_A          136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP  167 (279)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            78888888999999999999999998888875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.53  E-value=1.2e-13  Score=136.40  Aligned_cols=189  Identities=16%  Similarity=0.247  Sum_probs=130.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||+|||+|.||..++..|+.+|++|++||++++.++...+           .|             +..++++ +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            58999999999999999999999999999999987765321           12             2234454 34678


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeecccc-CcC-CCCCeEEEEe
Q 010966          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF-SPA-HVMPLLEIVR  299 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~-~P~-~~~~lveiv~  299 (496)
                      +|+||.|+|....++..++  .++.+.++++++|++.+++.+  ..++.+.+.. ...++....+ +|+ .....+.++.
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence            9999999997666554443  567788889998877665554  3466666543 2233332111 111 0112234443


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecC-cccch---hhchHH----HHHHHHHHHH-HcCCCHHHHHHHHH
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFF----PYTQAAFLLV-ERGTDLYLIDRAIT  362 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i---~nril~----~~~~ea~~l~-~~g~~~~~ID~a~~  362 (496)
                      +.  +++..+.+.++++.+|+.++++++ ..|..   +++.+.    ..++|++.+. ..|+++++++.++.
T Consensus       142 ~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  211 (299)
T 1vpd_A          142 GG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR  211 (299)
T ss_dssp             ES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             CC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            32  788999999999999999888864 34543   355444    4578888875 57999999999887

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.53  E-value=2.8e-14  Score=140.84  Aligned_cols=186  Identities=20%  Similarity=0.225  Sum_probs=129.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +||+|||+|.||..+|..|+++|++|++||++++.++...           +.|             +..+++. +.+++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~   56 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQ-----------DAG-------------EQVVSSPADVAEK   56 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHH-----------TTT-------------CEECSSHHHHHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence            4799999999999999999999999999999998766532           112             2234454 34688


Q ss_pred             CCEEEEeccCChHHHHHHHHH---HHhhCCCCeeEeccCCcccHHHHH---hhhcCCCeeeeccccC-cCCCC------C
Q 010966          227 VDMVIEAIIENVSLKQQIFAD---LEKYCPPHCILASNTSTIDLNLIG---ERTYSKDRIVGAHFFS-PAHVM------P  293 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~---l~~~~~~~~il~sntS~~~~~~la---~~~~~~~r~ig~hf~~-P~~~~------~  293 (496)
                      +|+||.|+|....++ .++.+   +.+.++++++|++ +|++++..+.   +.+...    |.+|.+ |+...      +
T Consensus        57 ~Dvvi~~vp~~~~~~-~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~  130 (296)
T 2gf2_A           57 ADRIITMLPTSINAI-EAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSG  130 (296)
T ss_dssp             CSEEEECCSSHHHHH-HHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHT
T ss_pred             CCEEEEeCCCHHHHH-HHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcC
Confidence            999999998766554 34544   3345678888888 7888776443   333211    334433 33221      2


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH-h
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-K  363 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~-~  363 (496)
                      .+.++.+  .+++..+.+.++++.+|+.++.+++ ..|.   ++|+.+.    ..++|++.+.. .|+++++++.++. +
T Consensus       131 ~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~  208 (296)
T 2gf2_A          131 NLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMS  208 (296)
T ss_dssp             CEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             cEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            2344444  3678899999999999998888865 2232   3455553    46899998764 7999999999887 4


Q ss_pred             cC
Q 010966          364 FG  365 (496)
Q Consensus       364 ~g  365 (496)
                      .|
T Consensus       209 ~~  210 (296)
T 2gf2_A          209 SG  210 (296)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.53  E-value=2.8e-13  Score=132.74  Aligned_cols=155  Identities=15%  Similarity=0.157  Sum_probs=116.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      |+||+|||+|.||.++|..|+.+|+  +|++||++++.++.+.           +.|...           ..++++ +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCcc-----------cccCCHHHH
Confidence            4689999999999999999999999  9999999998776532           223211           123444 45


Q ss_pred             cc-CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCC----------
Q 010966          224 FK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH----------  290 (496)
Q Consensus       224 ~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~----------  290 (496)
                      ++ +||+||+|+|.+.  ..+++.++.+.++++++|++.+++.  ..+.+.+.+..  ++++.||+.+..          
T Consensus        59 ~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~  134 (281)
T 2g5c_A           59 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN  134 (281)
T ss_dssp             GGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred             hcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence            78 9999999999763  4478888888888888877544433  33556665543  488889875321          


Q ss_pred             --CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                        ....+.++++..++++..+.+.++++.+|..++.+++
T Consensus       135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  173 (281)
T 2g5c_A          135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  173 (281)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence              3445778888788999999999999999998888874

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.53  E-value=2.9e-14  Score=134.80  Aligned_cols=154  Identities=18%  Similarity=0.259  Sum_probs=113.8

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +.|+||+|||+|.||..+|..|+++|++|++ +|++++.++...+.          .|.            ....++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~----------~g~------------~~~~~~~~~   78 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR----------FGA------------SVKAVELKD   78 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHH----------HTT------------TEEECCHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------hCC------------CcccChHHH
Confidence            3468999999999999999999999999999 99999877664321          111            112344566


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--------------cHHHHHhhhcCCCeeeeccccCcC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--------------DLNLIGERTYSKDRIVGAHFFSPA  289 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--------------~~~~la~~~~~~~r~ig~hf~~P~  289 (496)
                      ++++|+||.|+|.  ....+++.++.+ + +++++++.+.++              +.+.+++.++ ..+++..+++.|.
T Consensus        79 ~~~aDvVilavp~--~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~  153 (220)
T 4huj_A           79 ALQADVVILAVPY--DSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA  153 (220)
T ss_dssp             HTTSSEEEEESCG--GGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred             HhcCCEEEEeCCh--HHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence            8899999999984  456677777766 4 577888888777              4667777775 4577777665543


Q ss_pred             CCC---------CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          290 HVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       290 ~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ...         +...++.+  .+++..+.+.++++.+|+.++.+++
T Consensus       154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            221         23344444  4699999999999999999999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.53  E-value=3.1e-14  Score=140.34  Aligned_cols=183  Identities=16%  Similarity=0.208  Sum_probs=128.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++||+|||+|.||..+|..|+..|++|++|| +++.++...           +.|             +...++. +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELL-----------SLG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHH-----------HcC-------------CcccCCHHHHHh
Confidence            4699999999999999999999999999999 887665432           112             2223444 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHH---HHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccC-cCC-------CC
Q 010966          226 DVDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFS-PAH-------VM  292 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~---~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~-P~~-------~~  292 (496)
                      ++|+||.|+|.+..++. ++.   ++.+.++++++|++.+++.  +..++.+.+...    |.||++ |..       ..
T Consensus        58 ~~D~vi~~vp~~~~~~~-v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g  132 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVED-VLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREG  132 (295)
T ss_dssp             TCSEEEECCSSHHHHHH-HHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHT
T ss_pred             cCCEEEEECCCHHHHHH-HHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcC
Confidence            99999999998765544 444   6667788899888665553  345676666431    445543 322       12


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~----~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      .++.++.+   +++.++.+.++++.+|+.++++++ ..|.   ++++.+.    ..++|++.+.+ .|+++++++..+.
T Consensus       133 ~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~  208 (295)
T 1yb4_A          133 TLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALM  208 (295)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             CeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            44545554   788999999999999998888865 3343   2344333    35789888764 6899999999887

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.52  E-value=1.3e-13  Score=133.46  Aligned_cols=181  Identities=15%  Similarity=0.129  Sum_probs=125.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (496)
                      .+||+|||+|.||++||..|+++|    ++|++||++++.                 .|             +..+++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            468999999999999999999999    799999999764                 11             1223344 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT  300 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~  300 (496)
                      +.+++||+||.|+|.+  ...+++.++.+.+ ++.++++.+++++.+.+.+.++...+++...+..|......+. ++++
T Consensus        54 ~~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            4567899999999954  4678888888887 5777888899999988888776543454333344554444344 5577


Q ss_pred             CCCCHHHHHHHHHHHHHcCCceEEecCc-ccch------hhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGFA------VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (496)
Q Consensus       301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~i------~nril~~~~~ea~~--l~~~g~~~~~ID~a~~  362 (496)
                      +.++++.++.+.++++.+|+ ++.+++. .+.+      .|..+. .+.+++.  ....|+++++.-..+.
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~-~~~~al~~~~~~~Gl~~~~~~~~~~  199 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVY-LFIESLIDAGVKNGLSRELSKNLVL  199 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            77899999999999999997 7777642 1111      111221 2233322  3457888766555554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.51  E-value=2.3e-13  Score=135.16  Aligned_cols=167  Identities=18%  Similarity=0.242  Sum_probs=113.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc---c
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---S  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~  223 (496)
                      ++||+|||+|.||+.+|..|+++|++|++||++++.++...+           .|............++..+++.+   .
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK-----------NGLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------CCEEEEeCCCeeEecceeecchhhccc
Confidence            579999999999999999999999999999999987765432           12100000000001222222222   2


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeee-ecccc-----CcCC---C-C
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAH---V-M  292 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~i-g~hf~-----~P~~---~-~  292 (496)
                      ++++|+||.|+|.+  ...+++.++.+.++++++|++.+++++. +.+.+.++ +.+++ |.+++     .|-.   . .
T Consensus        72 ~~~~d~vi~~v~~~--~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTKAQ--QLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSCHH--HHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEeccc--cHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence            34899999999965  3567889999999999999988888876 55666554 33677 43332     2211   1 1


Q ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ..+.++....++++..+.+.++++.+|..+.+.+|
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d  183 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSN  183 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTT
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchh
Confidence            23445555667889999999999999998777765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.50  E-value=2.2e-13  Score=140.37  Aligned_cols=198  Identities=18%  Similarity=0.240  Sum_probs=132.6

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh----hcceecccC
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT----ISLLTGVLD  220 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~  220 (496)
                      ..++||+|||+|.||.++|..|++ |++|++||++++.++...+..          ..+.....+..    ..+++++++
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd  102 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTD  102 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcC
Confidence            356799999999999999999998 999999999999888754311          01111122222    236778888


Q ss_pred             c-ccccCCCEEEEeccCCh---------HHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccC
Q 010966          221 Y-ESFKDVDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS  287 (496)
Q Consensus       221 ~-~~~~~aDlVIeav~e~~---------~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~  287 (496)
                      + +.+++||+||+|||++.         ....++.+.+.+ ++++++|+. .||+++   .++.+.+..  .  ++. |+
T Consensus       103 ~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~--~v~-~s  175 (432)
T 3pid_A          103 KHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--D--NVI-FS  175 (432)
T ss_dssp             HHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--C--CEE-EC
T ss_pred             HHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--c--cEe-ec
Confidence            6 56899999999999874         234566778888 888887763 555554   466665542  1  332 37


Q ss_pred             cCCCCCe------E---EEEeCCCCCHHHHHHHHHHHHH--cCC-ceEEecC-cccc---hhhchHH----HHHHHHHHH
Q 010966          288 PAHVMPL------L---EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGN-CTGF---AVNRMFF----PYTQAAFLL  347 (496)
Q Consensus       288 P~~~~~l------v---eiv~~~~t~~e~~~~~~~l~~~--lGk-~~v~v~d-~~G~---i~nril~----~~~~ea~~l  347 (496)
                      |....+.      .   .|+.|.  +++..+.+.+++..  ++. .++.+.+ ..+.   ++++++.    +++||+..+
T Consensus       176 Pe~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~l  253 (432)
T 3pid_A          176 PEFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSY  253 (432)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654321      1   244442  45677888888886  553 3566654 2222   4555554    457999988


Q ss_pred             HH-cCCCHHHHHHHHH
Q 010966          348 VE-RGTDLYLIDRAIT  362 (496)
Q Consensus       348 ~~-~g~~~~~ID~a~~  362 (496)
                      .+ .|++++++-+++.
T Consensus       254 ae~~GiD~~~v~~~~~  269 (432)
T 3pid_A          254 AESQGLNSKQIIEGVC  269 (432)
T ss_dssp             HHHTTCCHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHc
Confidence            65 7999999988885

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.50  E-value=1.3e-13  Score=144.95  Aligned_cols=203  Identities=15%  Similarity=0.195  Sum_probs=136.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhhh-----ccee
Q 010966          146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKTI-----SLLT  216 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~-----~~i~  216 (496)
                      .|+||+|||+|.||.++|..|+++  |++|++||+++++++...            .|..  .........     .+++
T Consensus         4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~------------~g~~~i~e~~l~~~~~~~~~~~~~   71 (467)
T 2q3e_A            4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN------------SPTLPIYEPGLKEVVESCRGKNLF   71 (467)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEE
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh------------CCCCCcCCCCHHHHHHHhhcCCEE
Confidence            357999999999999999999998  899999999998877632            1111  011111111     2466


Q ss_pred             cccCc-ccccCCCEEEEeccCChHH-------------HHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCe
Q 010966          217 GVLDY-ESFKDVDMVIEAIIENVSL-------------KQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDR  279 (496)
Q Consensus       217 ~~~~~-~~~~~aDlVIeav~e~~~~-------------k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r  279 (496)
                      .++++ +.+++||+||.|||.....             ..++++++.++++++++|+. +|+.++   .++.+.+.... 
T Consensus        72 ~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~g~~~~l~~~l~~~~-  149 (467)
T 2q3e_A           72 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE-KSTVPVRAAESIRRIFDANT-  149 (467)
T ss_dssp             EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE-CSCCCTTHHHHHHHHHHHTC-
T ss_pred             EECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE-CCcCCchHHHHHHHHHHHhC-
Confidence            67776 4578999999999875532             34667788888888887754 344433   34554443221 


Q ss_pred             eeecc---ccCcCCCCCeE----------EEEeCCC--CCHHHHHHHHHHHHHc-CCceEEecCc-----ccchhhchH-
Q 010966          280 IVGAH---FFSPAHVMPLL----------EIVRTNQ--TSPQVIVDLLDIGKKI-KKTPIVVGNC-----TGFAVNRMF-  337 (496)
Q Consensus       280 ~ig~h---f~~P~~~~~lv----------eiv~~~~--t~~e~~~~~~~l~~~l-Gk~~v~v~d~-----~G~i~nril-  337 (496)
                      ..+.+   .++|....+..          .++.++.  ++++..+.+.++++.+ |+.++++.+.     ..++.|.++ 
T Consensus       150 ~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a  229 (467)
T 2q3e_A          150 KPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLA  229 (467)
T ss_dssp             CTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHH
Confidence            11122   24565443322          2344433  3788999999999998 7778887652     234556544 


Q ss_pred             --HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          338 --FPYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       338 --~~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                        .++++|++.+.+ .|+++++++.++.
T Consensus       230 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~  257 (467)
T 2q3e_A          230 QRISSINSISALCEATGADVEEVATAIG  257 (467)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence              356899998875 6899999999997

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.50  E-value=2.5e-13  Score=141.47  Aligned_cols=202  Identities=15%  Similarity=0.119  Sum_probs=130.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~  221 (496)
                      |||+|||+|.||..+|..|+.+|++|+++|++++.++...+..          -.+........      .+++..++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~g~l~~t~~~   70 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK----------SPIVEPGLEALLQQGRQTGRLSGTTDF   70 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHhhcccCceEEeCCH
Confidence            4899999999999999999999999999999999877643210          00111111111      2357777787


Q ss_pred             c-cccCCCEEEEeccCChH--------HHHHHHHHHHhhCCC---CeeEeccCCcccH----HHHHhhhcC--CCee-ee
Q 010966          222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPP---HCILASNTSTIDL----NLIGERTYS--KDRI-VG  282 (496)
Q Consensus       222 ~-~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~---~~il~sntS~~~~----~~la~~~~~--~~r~-ig  282 (496)
                      + .+++||+||.|||....        ...++++++.+++++   +++|+.. |+.++    +.+...+..  ..++ +.
T Consensus        71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~-Stv~~g~t~~~l~~~l~~~~g~~~~~~  149 (436)
T 1mv8_A           71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAGVD  149 (436)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred             HHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEe-CCcCCCchHHHHHHHHHHhcCcccCCc
Confidence            5 58899999999987654        134567888888888   8877643 34332    233333321  1111 11


Q ss_pred             cc-ccCcCCCCCeE---------EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-----ccchhhchH---HHHHHHH
Q 010966          283 AH-FFSPAHVMPLL---------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAVNRMF---FPYTQAA  344 (496)
Q Consensus       283 ~h-f~~P~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-----~G~i~nril---~~~~~ea  344 (496)
                      .+ .++|....+..         .++.+. ++++..+.+.++++.+|. ++.+.+.     ..++.|...   ..+++|+
T Consensus       150 ~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~-~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~  227 (436)
T 1mv8_A          150 FGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDA-PIIRKTVEVAEMIKYTCNVWHAAKVTFANEI  227 (436)
T ss_dssp             BEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSS-CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCC-CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 23554433221         234333 368899999999999998 4555442     223445443   3578999


Q ss_pred             HHHHH-cCCCHHHHHHHHH
Q 010966          345 FLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       345 ~~l~~-~g~~~~~ID~a~~  362 (496)
                      ..+.+ .|+++++++.++.
T Consensus       228 ~~l~~~~Gid~~~v~~~~~  246 (436)
T 1mv8_A          228 GNIAKAVGVDGREVMDVIC  246 (436)
T ss_dssp             HHHHHHTTSCHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHhc
Confidence            98875 5899999999986

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.49  E-value=4.3e-13  Score=135.74  Aligned_cols=165  Identities=14%  Similarity=0.134  Sum_probs=115.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcceecccCc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~-~~  223 (496)
                      .+||+|||+|.||.++|..|+++|++|++||++++.++...+.           +....  .. .....++..++++ +.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~-----------~~~~~~l~g-~~l~~~i~~t~d~~ea   96 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAE-----------GVNNRYLPN-YPFPETLKAYCDLKAS   96 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHH-----------SSBTTTBTT-CCCCTTEEEESCHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc-----------CCCcccCCC-CccCCCeEEECCHHHH
Confidence            4699999999999999999999999999999999887664321           11000  00 0112356677777 46


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH------HHHhhhcCCCeeeeccccCcCC------C
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN------LIGERTYSKDRIVGAHFFSPAH------V  291 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~------~la~~~~~~~r~ig~hf~~P~~------~  291 (496)
                      +++||+||.|||..  ..+++++++.++++++++++|.++++...      .+.+.++. .++.-  ...|.+      .
T Consensus        97 ~~~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~v--lsgP~~a~ev~~g  171 (356)
T 3k96_A           97 LEGVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAV--ISGPSLATEVAAN  171 (356)
T ss_dssp             HTTCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEE--EESSCCHHHHHTT
T ss_pred             HhcCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEE--EECccHHHHHHcC
Confidence            89999999999865  57889999999999999999888877654      34444431 11110  113322      2


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      .+...++.+  .+++..+.++++|...+..++...|..|
T Consensus       172 ~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g  208 (356)
T 3k96_A          172 LPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG  208 (356)
T ss_dssp             CCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred             CCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence            344334443  4788999999999999998888877544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.48  E-value=3.5e-13  Score=140.54  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=134.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~  221 (496)
                      +||+|||+|.||.++|..|+++|++|++||++++.++...+..          ..+........      ..++++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~----------~~i~e~gl~~~l~~~~~~~~l~~t~d~   72 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGT----------IPIYEPGLEKMIARNVKAGRLRFGTEI   72 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTC----------SCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCC----------CcccCCCHHHHHHhhcccCcEEEECCH
Confidence            6999999999999999999999999999999999887654210          00000011111      2467778887


Q ss_pred             c-cccCCCEEEEeccCChH--------HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcC--CCeeeeccc--
Q 010966          222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYS--KDRIVGAHF--  285 (496)
Q Consensus       222 ~-~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~--~~r~ig~hf--  285 (496)
                      + .+++||+||.|||....        ...++++++.++++++++|++.+ ++++   .++.+.+..  +....+..|  
T Consensus        73 ~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v  151 (450)
T 3gg2_A           73 EQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDI  151 (450)
T ss_dssp             HHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeE
Confidence            6 48999999999987642        56778899999999999887544 4443   344433311  000001111  


Q ss_pred             -cCcCCCCC--e--------EEEEeCCCCCHHHHHHHHHHHHHcCC--ceEEecCcc-cc---hhhchHH----HHHHHH
Q 010966          286 -FSPAHVMP--L--------LEIVRTNQTSPQVIVDLLDIGKKIKK--TPIVVGNCT-GF---AVNRMFF----PYTQAA  344 (496)
Q Consensus       286 -~~P~~~~~--l--------veiv~~~~t~~e~~~~~~~l~~~lGk--~~v~v~d~~-G~---i~nril~----~~~~ea  344 (496)
                       ++|....+  .        ..++.+  .+++..+.+.++++.+++  .++.+.+.. +.   ++++.+.    .+++|+
T Consensus       152 ~~~Pe~a~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~  229 (450)
T 3gg2_A          152 ASNPEFLKEGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDV  229 (450)
T ss_dssp             EECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhhhcccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             24543322  1        123333  368899999999999987  466666532 22   4455543    457999


Q ss_pred             HHHHH-cCCCHHHHHHHHH
Q 010966          345 FLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       345 ~~l~~-~g~~~~~ID~a~~  362 (496)
                      ..+.+ .|++++++-.++.
T Consensus       230 ~~l~~~~Gid~~~v~~~~~  248 (450)
T 3gg2_A          230 ANLCERVGADVSMVRLGIG  248 (450)
T ss_dssp             HHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHc
Confidence            98865 6999999999997

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=99.48  E-value=5.2e-14  Score=136.05  Aligned_cols=96  Identities=21%  Similarity=0.174  Sum_probs=87.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       155 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  199 (254)
T 3hrx_A          155 LLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGP-TR----------------------------------  199 (254)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccc-hH----------------------------------
Confidence            5799999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...+..++.|+|++|++++|++||+|+
T Consensus       200 -a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~  250 (254)
T 3hrx_A          200 -AYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPR  250 (254)
T ss_dssp             -HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence             334788999999999999999999999999999999999999999998764

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.47  E-value=5.4e-14  Score=136.08  Aligned_cols=96  Identities=22%  Similarity=0.309  Sum_probs=87.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||++++++++.+++++++..+ |.                                  
T Consensus       159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  203 (258)
T 4fzw_A          159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHS-PL----------------------------------  203 (258)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+|++|++++|++||+|+
T Consensus       204 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~  254 (258)
T 4fzw_A          204 -ALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPD  254 (258)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence             334789999999999999999999999999999999999999999998764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.47  E-value=5.5e-13  Score=130.94  Aligned_cols=185  Identities=14%  Similarity=0.118  Sum_probs=126.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      |+||+|||+|.||..+|..|+. |++|++||++++.++...+           .|.             ..++..+.+++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~-----------~g~-------------~~~~~~~~~~~   55 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQE-----------EFG-------------SEAVPLERVAE   55 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHH-----------HHC-------------CEECCGGGGGG
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHH-----------CCC-------------cccCHHHHHhC
Confidence            4689999999999999999999 9999999999987765432           111             11222244689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec--cCCcccHHHHHhhhcC-CCeeeeccccCc-CC---CCCeEEEEe
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS--NTSTIDLNLIGERTYS-KDRIVGAHFFSP-AH---VMPLLEIVR  299 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s--ntS~~~~~~la~~~~~-~~r~ig~hf~~P-~~---~~~lveiv~  299 (496)
                      +|+||.|+|.+..++ .++.++.+.++++++|++  +.+.....++.+.+.. ..+++.. ++.+ +.   ...+..++.
T Consensus        56 ~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            999999999765554 466888888888988874  3333445567766643 2345544 3221 11   123343443


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc----hhhch---HHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF----AVNRM---FFPYTQAAFLLV-ERGTDLYLIDRAIT  362 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~----i~nri---l~~~~~ea~~l~-~~g~~~~~ID~a~~  362 (496)
                      +   +++..+.+.+++ .+|+.++++++. .+.    +.|.+   +...++|+..+. ..|+++++++..+.
T Consensus       134 ~---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  201 (289)
T 2cvz_A          134 G---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN  201 (289)
T ss_dssp             S---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             C---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence            3   788999999999 999988888753 332    22332   234578888876 47899999988887

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.47  E-value=5.7e-13  Score=137.47  Aligned_cols=196  Identities=11%  Similarity=0.112  Sum_probs=132.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhh------hcceeccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKT------ISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~------~~~i~~~~  219 (496)
                      .|..|||+|.||..+|.+|+++||+|++||+++++++...+            |..  .+...++.      .+++.+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~------------g~~pi~epgl~~ll~~~~~~g~l~~tt   79 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQN------------GQISIEEPGLQEVYEEVLSSGKLKVST   79 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT------------TCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHhhcccCceEEeC
Confidence            58999999999999999999999999999999999887532            211  11111111      24577777


Q ss_pred             CcccccCCCEEEEeccCChH----------HHHHHHHHHHhhCCCCeeEeccCCcccHH---HHHhhh-c-CCCeeeec-
Q 010966          220 DYESFKDVDMVIEAIIENVS----------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERT-Y-SKDRIVGA-  283 (496)
Q Consensus       220 ~~~~~~~aDlVIeav~e~~~----------~k~~v~~~l~~~~~~~~il~sntS~~~~~---~la~~~-~-~~~r~ig~-  283 (496)
                      +   +++||+||.|||....          ......+.+.++++++++|+. .||+++.   ++...+ . ...+ .+. 
T Consensus        80 d---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~-~STV~pgtt~~v~~~i~e~~g~~-~~~d  154 (431)
T 3ojo_A           80 T---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV-ESTIAPKTMDDFVKPVIENLGFT-IGED  154 (431)
T ss_dssp             S---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE-CSCCCTTHHHHTHHHHHHTTTCC-BTTT
T ss_pred             c---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE-ecCCChhHHHHHHHHHHHHcCCC-cCCC
Confidence            6   4589999999987652          234556788889999997764 4566542   443322 1 1111 111 


Q ss_pred             -cc-cCcCCCCCe---------EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHH----HHHHHH
Q 010966          284 -HF-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAA  344 (496)
Q Consensus       284 -hf-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~----~~~~ea  344 (496)
                       ++ ++|....+.         ..++.|.  +++..+.+.++++.+++.++++++ ..+.   ++|+++.    +++||+
T Consensus       155 ~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~  232 (431)
T 3ojo_A          155 IYLVHCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANEL  232 (431)
T ss_dssp             EEEEECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11 256443221         1345552  689999999999999988888765 2233   5666665    357999


Q ss_pred             HHHHH-cCCCHHHHHHHHH
Q 010966          345 FLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       345 ~~l~~-~g~~~~~ID~a~~  362 (496)
                      +.+.+ .|++++++-+++.
T Consensus       233 ~~l~e~~GiD~~~v~~~~~  251 (431)
T 3ojo_A          233 TKICNNLNINVLDVIEMAN  251 (431)
T ss_dssp             HHHHHHTTCCHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHc
Confidence            98865 6999999999886

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.46  E-value=9.3e-13  Score=123.36  Aligned_cols=157  Identities=19%  Similarity=0.226  Sum_probs=115.1

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      +||+||| +|.||..++..|+++|++|+++|++++..+...+.+..    .+..            ..+.. +++ +.++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            4899999 99999999999999999999999999877654332110    0100            11222 233 4478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--------------HHHHHhhhcCCCeeeeccccCcCC-
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--------------LNLIGERTYSKDRIVGAHFFSPAH-  290 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--------------~~~la~~~~~~~r~ig~hf~~P~~-  290 (496)
                      ++|+||.|+|.+.  ..+++.++.+.++ ++++++.+++++              .+++++.++ ..+++..|+..|.. 
T Consensus        64 ~~D~Vi~~~~~~~--~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIPWEH--AIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSCHHH--HHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHH
T ss_pred             cCCEEEEeCChhh--HHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHH
Confidence            8999999998543  4477888877664 888988888776              678888775 36788776544322 


Q ss_pred             ------CCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCceEEecC
Q 010966          291 ------VMPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN  327 (496)
Q Consensus       291 ------~~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d  327 (496)
                            ...+..++.++  +++..+.+.++++.+ |+.++++++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                  22356666765  689999999999999 999999876

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.46  E-value=4.3e-13  Score=141.49  Aligned_cols=192  Identities=13%  Similarity=0.104  Sum_probs=131.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (496)
                      -.+|+|||+|.||.+||..|+++|++|++||++++.++...+.          ..  . .      ..++.++++++ ++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~--~-~------~gi~~~~s~~e~v~   70 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN----------EA--K-G------KSIIGATSIEDFIS   70 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT----------TT--T-T------SSEECCSSHHHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc----------cc--c-C------CCeEEeCCHHHHHh
Confidence            3589999999999999999999999999999999987764320          00  0 0      12445556543 44


Q ss_pred             C---CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhcC-CCeeeeccccCcCC---CCCeEE
Q 010966          226 D---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLE  296 (496)
Q Consensus       226 ~---aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~~-~~r~ig~hf~~P~~---~~~lve  296 (496)
                      +   ||+||.|||....++ +++.++.+.++++++|++.+++.+.  .++.+.+.. ..+|+++..+.++.   ..+  .
T Consensus        71 ~l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~  147 (497)
T 2p4q_A           71 KLKRPRKVMLLVKAGAPVD-ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--S  147 (497)
T ss_dssp             TSCSSCEEEECCCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--E
T ss_pred             cCCCCCEEEEEcCChHHHH-HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--e
Confidence            4   999999999876554 5668899999998888876655543  456555532 23444432222111   123  2


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCc------eEEec-Ccccc----hhhchH---HHHHHHHHHHHHc--CCCHHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKT------PIVVG-NCTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLIDRA  360 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~-d~~G~----i~nril---~~~~~ea~~l~~~--g~~~~~ID~a  360 (496)
                      ++.+  .+++..+.+.++++.+|..      +.+++ ...|.    +.|.+.   ...++|++.+...  |++++++..+
T Consensus       148 im~g--g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~  225 (497)
T 2p4q_A          148 LMPG--GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDV  225 (497)
T ss_dssp             EEEE--ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence            4444  2678899999999999987      56665 34444    245544   3457999998765  8999999988


Q ss_pred             HH
Q 010966          361 IT  362 (496)
Q Consensus       361 ~~  362 (496)
                      +.
T Consensus       226 ~~  227 (497)
T 2p4q_A          226 FA  227 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.46  E-value=3.3e-13  Score=140.15  Aligned_cols=201  Identities=15%  Similarity=0.169  Sum_probs=133.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh------hhcceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK------TISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~------~~~~i~~~~~~  221 (496)
                      -+|+|||+|.||.++|.+|+++|++|++||+++++++...+..          ..+.......      ..+++++++++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~----------~~~~epgl~~~~~~~~~~g~l~~ttd~   78 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNV----------MPIYEPGLDALVASNVKAGRLSFTTDL   78 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCC----------CCccCCCHHHHHHhhcccCCEEEECCH
Confidence            4899999999999999999999999999999999887643210          0000011111      12467888888


Q ss_pred             -ccccCCCEEEEeccCChH---------HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcC--CCeeeeccc-
Q 010966          222 -ESFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYS--KDRIVGAHF-  285 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~--~~r~ig~hf-  285 (496)
                       +.+++||+||.|||....         ...++++.+.++++++++|++. ||+++   .++.+.+..  +.  ...+. 
T Consensus        79 ~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgtt~~l~~~l~e~~~~--~d~~v~  155 (446)
T 4a7p_A           79 AEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVPVGTGDEVERIIAEVAPN--SGAKVV  155 (446)
T ss_dssp             HHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCCTTHHHHHHHHHHHHSTT--SCCEEE
T ss_pred             HHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCCchHHHHHHHHHHHhCCC--CCceEE
Confidence             578999999999987653         4667788999999999988764 45554   344443311  11  11111 


Q ss_pred             cCcCCCCCeE---------EEEeCCCCCHHHHHHHHHHHHHcCCc---eEEecCcc-c---chhhchHH----HHHHHHH
Q 010966          286 FSPAHVMPLL---------EIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVGNCT-G---FAVNRMFF----PYTQAAF  345 (496)
Q Consensus       286 ~~P~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lGk~---~v~v~d~~-G---~i~nril~----~~~~ea~  345 (496)
                      ++|....+..         .++.+. .+++..+.+.++++.+++.   ++.+.+.. +   -++++.+.    .+++|+.
T Consensus       156 ~~Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~  234 (446)
T 4a7p_A          156 SNPEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIA  234 (446)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCcccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2454322111         233331 3578999999999999875   57776632 2   24566554    3579999


Q ss_pred             HHHH-cCCCHHHHHHHHH
Q 010966          346 LLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       346 ~l~~-~g~~~~~ID~a~~  362 (496)
                      .+.+ .|++++++-.++.
T Consensus       235 ~l~~~~GiD~~~v~~~~~  252 (446)
T 4a7p_A          235 DLCEQVGADVQEVSRGIG  252 (446)
T ss_dssp             HHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHh
Confidence            8865 7999999999986

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.46  E-value=3.6e-13  Score=133.21  Aligned_cols=139  Identities=20%  Similarity=0.212  Sum_probs=107.1

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ++||+||| +|.||+++|..|+.+|++|+++|++++.                                    +..+.++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~   64 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA   64 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence            56899999 9999999999999999999999998641                                    0113367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCC----CCCeEEEEe
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH----VMPLLEIVR  299 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~----~~~lveiv~  299 (496)
                      +||+||.|||.+.  ..+++.++.++++++++|++.+|+.  .++.+...+  +.++++.||+.++.    ....+.+++
T Consensus        65 ~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~  140 (298)
T 2pv7_A           65 NADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD  140 (298)
T ss_dssp             TCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred             CCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence            8999999999764  6788899998899999887655443  234454443  47899999975432    234555666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      +.  +++..+.+.++++.+|..++.+.+
T Consensus       141 ~~--~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          141 GR--FPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             EE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             CC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence            54  678899999999999998888863

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.46  E-value=8.2e-14  Score=135.95  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       175 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  219 (274)
T 4fzw_C          175 LALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQP-TF----------------------------------  219 (274)
T ss_dssp             HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.....+++++++.|...+..++.|+|++|++++|++||+|+
T Consensus       220 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~  270 (274)
T 4fzw_C          220 -GLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQ  270 (274)
T ss_dssp             -HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCC
T ss_pred             -HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence             334789999999999999999999999999999999999999999998754

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.45  E-value=8.8e-13  Score=138.02  Aligned_cols=193  Identities=12%  Similarity=0.091  Sum_probs=130.7

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  223 (496)
                      ++++|+|||+|.||.+||..|+++|++|++||++++.++...+           .+..        -.++..++++++  
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------g~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAK--------GTKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTT--------TSSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccC--------CCceeccCCHHHHH
Confidence            4579999999999999999999999999999999998776432           1110        012333455443  


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhc-CCCeeeeccccC-c--CCCCCeE
Q 010966          224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFS-P--AHVMPLL  295 (496)
Q Consensus       224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~-~~~r~ig~hf~~-P--~~~~~lv  295 (496)
                        ++++|+||.|||....+ .+++.++.+.++++.+|++.+++.+.  .++.+.+. ...+|++..... |  +...+  
T Consensus        64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~--  140 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP--  140 (484)
T ss_dssp             HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--
T ss_pred             hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC--
Confidence              34699999999987554 45778999999999988876666543  34444442 223344431111 1  11234  


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCce-------EEecC-cccc---hhhchHH----HHHHHHHHHHHc--CCCHHHHH
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AVNRMFF----PYTQAAFLLVER--GTDLYLID  358 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G~---i~nril~----~~~~ea~~l~~~--g~~~~~ID  358 (496)
                      .++.+  .++++++.+.++++.+|..+       +++++ +.|.   ++++.+.    ..++|++.+.+.  |++++++-
T Consensus       141 ~im~G--G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~  218 (484)
T 4gwg_A          141 SLMPG--GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA  218 (484)
T ss_dssp             EEEEE--ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eeecC--CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            33433  26789999999999999876       66654 2343   3444443    347899998865  88999988


Q ss_pred             HHHH
Q 010966          359 RAIT  362 (496)
Q Consensus       359 ~a~~  362 (496)
                      .++.
T Consensus       219 ~v~~  222 (484)
T 4gwg_A          219 QAFE  222 (484)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.44  E-value=1.7e-12  Score=136.57  Aligned_cols=191  Identities=14%  Similarity=0.128  Sum_probs=131.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (496)
                      -++|+|||+|.||.+||..|+++|++|++||++++.++...+..         .+           ..++.++++++ ++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~v~   74 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN---------PG-----------KKLVPYYTVKEFVE   74 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS---------TT-----------SCEEECSSHHHHHH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC---------CC-----------CCeEEeCCHHHHHh
Confidence            46899999999999999999999999999999999877643210         00           12445556543 44


Q ss_pred             C---CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhcC-CCeeeeccccC-cC--CCCCeEE
Q 010966          226 D---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFS-PA--HVMPLLE  296 (496)
Q Consensus       226 ~---aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~~-~~r~ig~hf~~-P~--~~~~lve  296 (496)
                      +   +|+||.|||....+ .+++.++.+.++++++|++.+++.+.  ..+.+.+.. ..+++++..+. |.  ...+  .
T Consensus        75 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~  151 (480)
T 2zyd_A           75 SLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP--S  151 (480)
T ss_dssp             TBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--E
T ss_pred             CCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC--e
Confidence            4   99999999986544 46778899999989888877666643  456555532 33454432111 11  1234  3


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCc-------eEEecC-cccc----hhhchH---HHHHHHHHHHHHc--CCCHHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLIDR  359 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G~----i~nril---~~~~~ea~~l~~~--g~~~~~ID~  359 (496)
                      ++.+  .+++..+.+.++++.+|..       +.++++ ..|.    +.|.+.   ...+.|++.+...  |++++++..
T Consensus       152 i~~g--g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~  229 (480)
T 2zyd_A          152 IMPG--GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQ  229 (480)
T ss_dssp             EEEE--SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEec--CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            4544  2689999999999999987       566654 3333    234443   3457899988764  999999888


Q ss_pred             HHH
Q 010966          360 AIT  362 (496)
Q Consensus       360 a~~  362 (496)
                      ++.
T Consensus       230 l~~  232 (480)
T 2zyd_A          230 TFT  232 (480)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            773

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.44  E-value=4e-13  Score=134.55  Aligned_cols=122  Identities=20%  Similarity=0.310  Sum_probs=92.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||.++|..++.+|+ +|++||++++.++.....+.+....            .....+++.+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~------------~~~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMAL------------IGSPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHH------------HTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhc------------cCCCCEEEECCCHHHHCC
Confidence            599999999999999999999999 9999999998887644343333211            011346778788988999


Q ss_pred             CCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhhc--CCCeeeec
Q 010966          227 VDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVGA  283 (496)
Q Consensus       227 aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~~--~~~r~ig~  283 (496)
                      ||+||+++  |+            +..+++++++++.+++ |++++  +||++.+. +.++....  +|+|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            4577999999999998 55544  78876653 45544443  57888887

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.42  E-value=1.5e-12  Score=137.14  Aligned_cols=204  Identities=14%  Similarity=0.205  Sum_probs=131.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhh-----hccee
Q 010966          146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKT-----ISLLT  216 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~-----~~~i~  216 (496)
                      +++||+|||+|.||.++|..|+.+  |++|++||+++++++...            .|...  .......     ..+++
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~------------~g~~~i~e~gl~~~~~~~~~~~l~   75 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWN------------SDKLPIYEPGLDEIVFAARGRNLF   75 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH------------CCCCCcCCCCHHHHHHHhhcCCEE
Confidence            467999999999999999999998  799999999999887643            22110  0111111     13467


Q ss_pred             cccCc-ccccCCCEEEEeccCChH-------------HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCe
Q 010966          217 GVLDY-ESFKDVDMVIEAIIENVS-------------LKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDR  279 (496)
Q Consensus       217 ~~~~~-~~~~~aDlVIeav~e~~~-------------~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r  279 (496)
                      +++++ +.+++||+||.|||....             ...++++.+.++++++++|+. .||+++   .++.+.+..-.+
T Consensus        76 ~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~  154 (481)
T 2o3j_A           76 FSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQK  154 (481)
T ss_dssp             EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC
T ss_pred             EECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhC
Confidence            77776 568899999999986532             356778889999999998874 334432   344443322001


Q ss_pred             e-eecc---ccCcCCCCCeE---------EEE-eCCCC--CHHHHHHHHHHHHHcCC-ceEEecCc-cc----chhhch-
Q 010966          280 I-VGAH---FFSPAHVMPLL---------EIV-RTNQT--SPQVIVDLLDIGKKIKK-TPIVVGNC-TG----FAVNRM-  336 (496)
Q Consensus       280 ~-ig~h---f~~P~~~~~lv---------eiv-~~~~t--~~e~~~~~~~l~~~lGk-~~v~v~d~-~G----~i~nri-  336 (496)
                      . .+..   .++|....+..         .++ .++..  ++++.+.+.++++.+++ .++++.+. .+    ++.|.+ 
T Consensus       155 ~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~  234 (481)
T 2o3j_A          155 NNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFL  234 (481)
T ss_dssp             ----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHH
T ss_pred             cCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHH
Confidence            0 0111   12443322111         233 33321  23678899999999996 67777652 12    233432 


Q ss_pred             --HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966          337 --FFPYTQAAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       337 --l~~~~~ea~~l~~-~g~~~~~ID~a~~  362 (496)
                        ...+++|+..+.+ .|++++++..++.
T Consensus       235 a~~ia~~nE~~~la~~~Gid~~~v~~~~~  263 (481)
T 2o3j_A          235 AQRISSINSISAVCEATGAEISEVAHAVG  263 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence              2356899998875 6999999999987

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.42  E-value=2.8e-12  Score=124.30  Aligned_cols=175  Identities=14%  Similarity=0.121  Sum_probs=115.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      |||+|||+|.||..||..|+++|++|++||+  +++.++...           +.|             ++  ++. +.+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~-----------~~g-------------~~--~~~~~~~   54 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-----------TVG-------------VT--ETSEEDV   54 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHT-------------CE--ECCHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHH-----------HCC-------------Cc--CCHHHHH
Confidence            4899999999999999999999999999999  666655422           112             11  233 446


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc---HHHHHhhhcCCCeeeeccccCcCC---CCCeEEEE
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYSKDRIVGAHFFSPAH---VMPLLEIV  298 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~---~~~la~~~~~~~r~ig~hf~~P~~---~~~lveiv  298 (496)
                      ++||+||.|||.+...+.  +.++.+.+++  ++++. |+.+   ..++.+.+.... ++..+++.++.   ...+ .++
T Consensus        55 ~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~  127 (264)
T 1i36_A           55 YSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIA  127 (264)
T ss_dssp             HTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEE
T ss_pred             hcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEe
Confidence            899999999998765433  3566666666  44433 3443   346777776544 66665554432   2233 455


Q ss_pred             eCCCCCHHHHHHHHHHHHHcCCceEEecCcccc-----hhhchH----HHHHHHHHHHH-HcCCCHHHHHHHHH
Q 010966          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMF----FPYTQAAFLLV-ERGTDLYLIDRAIT  362 (496)
Q Consensus       299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~-----i~nril----~~~~~ea~~l~-~~g~~~~~ID~a~~  362 (496)
                      .++.  .   +.+.+ ++.+|+.++.+++..|.     +.++.+    ...++|++.+. ..|++++.+ ..+.
T Consensus       128 ~g~~--~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~~  194 (264)
T 1i36_A          128 SGRD--A---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EMLE  194 (264)
T ss_dssp             ESTT--H---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             cCCc--H---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHH
Confidence            5532  2   67778 99999998888754454     345544    34578888875 468987644 4444

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=99.42  E-value=2.2e-13  Score=132.16  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=87.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.++|++++..+ |.                                  
T Consensus       164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  208 (263)
T 3moy_A          164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMS-RP----------------------------------  208 (263)
T ss_dssp             HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+++
T Consensus       209 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~  259 (263)
T 3moy_A          209 -AGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPE  259 (263)
T ss_dssp             -HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCC
Confidence             345899999999989999999999999999999999999999999998764

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=99.42  E-value=2.2e-13  Score=132.30  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=87.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  210 (265)
T 3kqf_A          166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNG-PI----------------------------------  210 (265)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+++
T Consensus       211 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3kqf_A          211 -AVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPM  261 (265)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             345789999999999999999999999999999999999999999988754

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=99.41  E-value=3.3e-13  Score=130.41  Aligned_cols=96  Identities=21%  Similarity=0.295  Sum_probs=87.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  201 (256)
T 3trr_A          157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANG-PL----------------------------------  201 (256)
T ss_dssp             HHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+++
T Consensus       202 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  252 (256)
T 3trr_A          202 -AVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPV  252 (256)
T ss_dssp             -HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence             334789999999999999999999999999999999999999999988754

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=99.41  E-value=2.6e-13  Score=132.54  Aligned_cols=96  Identities=24%  Similarity=0.306  Sum_probs=87.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       179 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  223 (278)
T 3h81_A          179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMS-AS----------------------------------  223 (278)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+++
T Consensus       224 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~  274 (278)
T 3h81_A          224 -AARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQ  274 (278)
T ss_dssp             -HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             345899999999989999999999999999999999999999999998754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.41  E-value=1.1e-13  Score=143.54  Aligned_cols=90  Identities=18%  Similarity=0.306  Sum_probs=75.1

Q ss_pred             ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCC--cccc
Q 010966          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPER--TYKS  400 (496)
Q Consensus       329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~--~~~~  400 (496)
                      ...+.+|++.+++||+++++++|+  ++.|||.+|. |+|||.   |||+++|.+|++.+...++.|.+.+|++  +.|+
T Consensus       355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~  434 (460)
T 3k6j_A          355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVA  434 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            467999999999999999999998  6999999999 999997   9999999999999999999999999998  6799


Q ss_pred             chHHHHHhcCCCccccCc
Q 010966          401 MIIPIMQEDKRAGETTRK  418 (496)
Q Consensus       401 ~~l~~~~~~G~lG~k~g~  418 (496)
                      ++|.+|+++|++|.|||.
T Consensus       435 ~~L~~~a~~g~~~~~~~~  452 (460)
T 3k6j_A          435 DALKTANVSTGSSGSSGG  452 (460)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHcCCCccccCC
Confidence            999999999999999995

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.41  E-value=3.8e-12  Score=133.81  Aligned_cols=191  Identities=13%  Similarity=0.077  Sum_probs=130.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (496)
                      .++|+|||+|.||..+|..|+++|++|++||++++.++...+..         .+           ..+..++++++ ++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH---------QD-----------KNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT---------TT-----------SCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC---------cC-----------CCeEEeCCHHHHHh
Confidence            36899999999999999999999999999999999877643210         00           12444555543 34


Q ss_pred             ---CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCcC---CCCCeEE
Q 010966          226 ---DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPA---HVMPLLE  296 (496)
Q Consensus       226 ---~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P~---~~~~lve  296 (496)
                         ++|+||.|||....++ .++.++.+.++++++|++.+++.+  ..++.+.+.. ..+++++..+.++   ...+  .
T Consensus        65 ~l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~  141 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S  141 (474)
T ss_dssp             TBCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred             hccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence               4999999999865544 566888888988888887666653  3566666543 2344443211111   1123  2


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCc--------eEEecC-cccc----hhhchH---HHHHHHHHHHHHc--CCCHHHHH
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKT--------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLID  358 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~--------~v~v~d-~~G~----i~nril---~~~~~ea~~l~~~--g~~~~~ID  358 (496)
                      ++++.  +++..+.+.++++.+|..        +.++++ ..|.    +.|.+.   ...+.|++.+...  |++++++.
T Consensus       142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~  219 (474)
T 2iz1_A          142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ  219 (474)
T ss_dssp             EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34432  789999999999999987        355553 3332    344443   3457999998764  89999998


Q ss_pred             HHHH
Q 010966          359 RAIT  362 (496)
Q Consensus       359 ~a~~  362 (496)
                      .++.
T Consensus       220 ~l~~  223 (474)
T 2iz1_A          220 AIFE  223 (474)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8884

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=99.40  E-value=4.2e-13  Score=129.66  Aligned_cols=96  Identities=13%  Similarity=0.113  Sum_probs=87.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  200 (255)
T 3p5m_A          156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGP-TL----------------------------------  200 (255)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++
T Consensus       201 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  251 (255)
T 3p5m_A          201 -AFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPN  251 (255)
T ss_dssp             -HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             334789999998888999999999999999999999999999999988654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.40  E-value=7.5e-13  Score=133.23  Aligned_cols=182  Identities=18%  Similarity=0.131  Sum_probs=123.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      .++|+|||+|.||+++|..|..+|++|+++|++++. .+.+           .+.|             +..+ +. +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a-----------~~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHH-----------HHCC-------------CEEc-cHHHHH
Confidence            468999999999999999999999999999999765 2221           1122             1122 43 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCCcccHHHHHhhh-cCCCeeeeccccCcCCC---------CC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHFFSPAHV---------MP  293 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~~~~~~la~~~-~~~~r~ig~hf~~P~~~---------~~  293 (496)
                      ++||+||.|+|...  ...++. ++.+.++++++|++. +++.+ .+.... ....++++.||+.|.+.         ..
T Consensus        71 ~~aDvVilavp~~~--~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCCcHH--HHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            89999999999764  367887 888889999988876 45554 333322 12235999999877641         23


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCC-c--eEEec----C-cccchhhchH----HHHHHHHH-HHHHcCCCHHHH
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKK-T--PIVVG----N-CTGFAVNRMF----FPYTQAAF-LLVERGTDLYLI  357 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk-~--~v~v~----d-~~G~i~nril----~~~~~ea~-~l~~~g~~~~~I  357 (496)
                      .+-++++..++++..+.+..+++.+|. .  ++.+.    + ...+..+..+    -.++..++ .+++.|+++++.
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence            344567667788899999999999998 4  55553    1 1233322222    23344444 345788877643

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.40  E-value=3.2e-13  Score=148.08  Aligned_cols=120  Identities=15%  Similarity=0.168  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhcc
Q 010966          304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLV  377 (496)
Q Consensus       304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~  377 (496)
                      +++..+.+..+....+......  ....+..|++.+++||+++++++|+  ++.|||.+|. |+|||.   |||+++|.+
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~--~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~  689 (742)
T 3zwc_A          612 DPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASV  689 (742)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHH
T ss_pred             ChHHHHHHHHHhhhcCCCcCCC--CHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHH
Confidence            5555555555444443322222  1245899999999999999999997  8999999999 999997   999999999


Q ss_pred             CchhHHHhhhhhhhhCCC--CccccchHHHHHhcCCCccccCceeeeecC
Q 010966          378 GFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (496)
Q Consensus       378 Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~  425 (496)
                      |++.+++.++.+...+|+  ++.|++||.+|+++|....+.++|||.+..
T Consensus       690 G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          690 GLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             CHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCcccccccccCCCC
Confidence            999999999999999997  567999999999999888888888887754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.40  E-value=9.4e-13  Score=131.45  Aligned_cols=124  Identities=18%  Similarity=0.321  Sum_probs=92.9

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      +++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.+..            .....+++.+++++++
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~------------~~~~~~i~~t~d~~al   70 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM------------AYSNCKVSGSNTYDDL   70 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH------------HTCCCCEEEECCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhh------------cCCCcEEEECCCHHHh
Confidence            35799999999999999999999998 9999999998887554444333211            1112467777888889


Q ss_pred             cCCCEEEEec--cCCh-----------------HHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhhc--CCCeee
Q 010966          225 KDVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIV  281 (496)
Q Consensus       225 ~~aDlVIeav--~e~~-----------------~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~~--~~~r~i  281 (496)
                      ++||+||+++  |+++                 .+++++++++.+++ |++++  +||++.+. +.++....  .|.|++
T Consensus        71 ~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rvi  148 (322)
T 1t2d_A           71 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKII  148 (322)
T ss_dssp             TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEE
Confidence            9999999998  6542                 37899999999998 56644  68877664 45554443  577888


Q ss_pred             ec
Q 010966          282 GA  283 (496)
Q Consensus       282 g~  283 (496)
                      |+
T Consensus       149 G~  150 (322)
T 1t2d_A          149 GL  150 (322)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=99.40  E-value=4.9e-13  Score=129.90  Aligned_cols=96  Identities=22%  Similarity=0.232  Sum_probs=87.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  210 (265)
T 3rsi_A          166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNG-PL----------------------------------  210 (265)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...+..++.|+|+++++++|++||+++
T Consensus       211 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3rsi_A          211 -AVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREAR  261 (265)
T ss_dssp             -HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             334789999998888999999999999999999999999999999998654

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=99.40  E-value=4.5e-13  Score=130.19  Aligned_cols=96  Identities=24%  Similarity=0.297  Sum_probs=87.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  210 (265)
T 3swx_A          166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQA-PL----------------------------------  210 (265)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.....+++++++.|...+..++.|+++++++++|++||+++
T Consensus       211 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3swx_A          211 -GVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAE  261 (265)
T ss_dssp             -HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence             334788999988888999999999999999999999999999999998764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.39  E-value=8.2e-12  Score=119.89  Aligned_cols=166  Identities=16%  Similarity=0.146  Sum_probs=103.4

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHH-HHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGI-GRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~-~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ..+||+|||+|.||.+||..|+++|++|++||++++. +.... ...          +.....+.......+..++..+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~   87 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAM----------GAPPFSQWLPEHPHVHLAAFADV   87 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-----------------CCHHHHGGGSTTCEEEEHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhh----------cchhhhHHHhhcCceeccCHHHH
Confidence            3579999999999999999999999999999999986 11100 000          00000001111122233333456


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHH-HhhCCCCeeEeccCCcc----------------cH-HHHHhhhcCCCeeee-cc
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTSTI----------------DL-NLIGERTYSKDRIVG-AH  284 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~~----------------~~-~~la~~~~~~~r~ig-~h  284 (496)
                      +++||+||.|||.+..  .+++.++ .+.+ ++++|++.+.++                .+ +.+.+.++ ..+++. ++
T Consensus        88 ~~~aDvVilavp~~~~--~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~~  163 (245)
T 3dtt_A           88 AAGAELVVNATEGASS--IAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTLN  163 (245)
T ss_dssp             HHHCSEEEECSCGGGH--HHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECST
T ss_pred             HhcCCEEEEccCcHHH--HHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEeec
Confidence            7899999999997643  3556677 6666 677777666321                33 45555554 356654 44


Q ss_pred             ccC------cCC--CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCce-EEecC
Q 010966          285 FFS------PAH--VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP-IVVGN  327 (496)
Q Consensus       285 f~~------P~~--~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~-v~v~d  327 (496)
                      +..      |..  ..++..++.++  +++..+.+.++++.+|+.+ +.+++
T Consensus       164 ~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          164 TMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             TSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             ccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence            431      111  23444455553  7899999999999999764 77775

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=99.39  E-value=2.1e-13  Score=132.26  Aligned_cols=96  Identities=30%  Similarity=0.420  Sum_probs=86.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       162 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  206 (261)
T 3pea_A          162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKS-PA----------------------------------  206 (261)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...|..++.|+|+++++++|++||+++
T Consensus       207 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  257 (261)
T 3pea_A          207 -TARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS  257 (261)
T ss_dssp             -HHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             345789999988888899999999999999999999999999999998764

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=99.38  E-value=2.5e-13  Score=132.52  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=87.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       170 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p~----------------------------------  214 (275)
T 3hin_A          170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNA-PL----------------------------------  214 (275)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       |...+|++++.....+++++++.|...+..++.|+|++|++++|++||+++.
T Consensus       215 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f  266 (275)
T 3hin_A          215 -TNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKV  266 (275)
T ss_dssp             -HHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence             3347889999988899999999999999999999999999999999998654

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=99.38  E-value=5.7e-13  Score=130.44  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=86.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       178 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  222 (279)
T 3g64_A          178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGP-AL----------------------------------  222 (279)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...+..++.|+|+++++++|++||+++
T Consensus       223 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  273 (279)
T 3g64_A          223 -AHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPK  273 (279)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence             334789999998888999999999999999999999999999999988654

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=99.38  E-value=3.7e-13  Score=130.91  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       162 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  206 (268)
T 3i47_A          162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA-PE----------------------------------  206 (268)
T ss_dssp             HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRA-GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~-~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       |...+|++++.....++++ .++.|.+.+..++.|+|++|++++|++||++.-
T Consensus       207 -a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f  259 (268)
T 3i47_A          207 -AVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNW  259 (268)
T ss_dssp             -HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTT
T ss_pred             -HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence             3347899999988888888 689999999999999999999999999987654

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=99.38  E-value=5.5e-13  Score=130.87  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=87.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  226 (286)
T 3myb_A          182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKP-RA----------------------------------  226 (286)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++-
T Consensus       227 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f  278 (286)
T 3myb_A          227 -AVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEW  278 (286)
T ss_dssp             -HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence             3347899999988889999999999999999999999999999999987653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.38  E-value=7.3e-12  Score=131.73  Aligned_cols=194  Identities=12%  Similarity=0.068  Sum_probs=130.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-  225 (496)
                      |||+|||+|.||..+|..|+++|++|++||++++.++...+.          .|.. +.     ...+..++++++ ++ 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~-~~-----~~~i~~~~~~~e~v~~   65 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASA-PF-----AGNLKAFETMEAFAAS   65 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTS-TT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCC-CC-----CCCeEEECCHHHHHhc
Confidence            479999999999999999999999999999999887764321          1211 00     023455566544 33 


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCcC---CCCCeEEE
Q 010966          226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPA---HVMPLLEI  297 (496)
Q Consensus       226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P~---~~~~lvei  297 (496)
                        ++|+||.|||....+ ..++.++.+.++++++|++.+++.+  ...+.+.+.. ...+++.....++   ...+  .+
T Consensus        66 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i  142 (478)
T 1pgj_A           66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AF  142 (478)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eE
Confidence              599999999987554 4566888888988888886665553  3456665542 2344443222211   1233  23


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCc-------eEEecC-cccc----hhhchH---HHHHHHHHHHHH-cCCCHHHHHHHH
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVE-RGTDLYLIDRAI  361 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G~----i~nril---~~~~~ea~~l~~-~g~~~~~ID~a~  361 (496)
                      +.+  .+++..+.+.++++.+|..       +.++++ ..|.    +.|.+.   ...+.|++.+.. .|++++++..++
T Consensus       143 ~~g--g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~  220 (478)
T 1pgj_A          143 FPG--GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL  220 (478)
T ss_dssp             EEE--ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ecc--CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            443  2688999999999999987       455553 3333    234333   245789988764 688999998887


Q ss_pred             H
Q 010966          362 T  362 (496)
Q Consensus       362 ~  362 (496)
                      .
T Consensus       221 ~  221 (478)
T 1pgj_A          221 E  221 (478)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=99.38  E-value=5e-13  Score=129.80  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=87.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  210 (265)
T 3qxi_A          166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANG-PL----------------------------------  210 (265)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...+..++.|+|+++++++|++||+++
T Consensus       211 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3qxi_A          211 -AVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPR  261 (265)
T ss_dssp             -HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             334789999998888999999999999999999999999999999988754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.37  E-value=3.7e-12  Score=134.23  Aligned_cols=191  Identities=14%  Similarity=0.114  Sum_probs=128.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F--  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~--  224 (496)
                      ++|+|||+|.||..+|..|+++|++|++||++++.++...+.   .     ..|           ..+..++++++ +  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---~-----~~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---E-----AKG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---T-----TTT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc---c-----ccC-----------CCeEEeCCHHHHHhh
Confidence            579999999999999999999999999999999887764320   0     000           12344556544 2  


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhcC-CCeeeeccccCcCC---CCCeEEE
Q 010966          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLEI  297 (496)
Q Consensus       225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~~-~~r~ig~hf~~P~~---~~~lvei  297 (496)
                       +++|+||.|||....++ .++.++.+.++++++|++.+++.+.  ..+.+.+.. ...++++..+.++.   ..+  .+
T Consensus        64 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i  140 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL  140 (482)
T ss_dssp             BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEeCCChHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence             58999999999875544 5678888899888888876666543  355555532 33455442222211   123  23


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCce-------EEec-Ccccc----hhhchH---HHHHHHHHHHHH-c-CCCHHHHHHH
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTP-------IVVG-NCTGF----AVNRMF---FPYTQAAFLLVE-R-GTDLYLIDRA  360 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~-------v~v~-d~~G~----i~nril---~~~~~ea~~l~~-~-g~~~~~ID~a  360 (496)
                      +.+.  +++..+.+.++++.+|..+       .+++ ...|.    +.|.+.   ...++|++.+.. . |++++++..+
T Consensus       141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~  218 (482)
T 2pgd_A          141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA  218 (482)
T ss_dssp             EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence            4432  4678899999999999875       4444 22332    345443   345799998875 5 8899999988


Q ss_pred             HH
Q 010966          361 IT  362 (496)
Q Consensus       361 ~~  362 (496)
                      +.
T Consensus       219 ~~  220 (482)
T 2pgd_A          219 FE  220 (482)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=99.36  E-value=5.8e-13  Score=130.30  Aligned_cols=96  Identities=19%  Similarity=0.212  Sum_probs=87.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.++|++++..+ |.                                  
T Consensus       179 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  223 (278)
T 4f47_A          179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANG-PL----------------------------------  223 (278)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+++
T Consensus       224 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~  274 (278)
T 4f47_A          224 -AVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPN  274 (278)
T ss_dssp             -HHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence             334789999999888999999999999999999999999999999988754

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=99.36  E-value=6.7e-13  Score=129.63  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             CcccCC--CCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCC
Q 010966            1 MMLTSK--PVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAP   78 (496)
Q Consensus         1 miltG~--~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (496)
                      |+|||+  +++|+||+++||||+|+|+++++++|.++|++++..+ |.                                
T Consensus       173 l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~--------------------------------  219 (274)
T 3tlf_A          173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNA-PL--------------------------------  219 (274)
T ss_dssp             HHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH--------------------------------
T ss_pred             HHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCC-HH--------------------------------
Confidence            578999  9999999999999999999999999999999999862 32                                


Q ss_pred             CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           79 NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        79 ~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                         +...+|++++.....+++++++.|...+..++.|+|+++++++|++||+++
T Consensus       220 ---a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  270 (274)
T 3tlf_A          220 ---AVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPN  270 (274)
T ss_dssp             ---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence               344789999999888999999999999999999999999999999988654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.36  E-value=2.8e-12  Score=120.11  Aligned_cols=135  Identities=11%  Similarity=0.074  Sum_probs=101.4

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ..+||+|||+|.||+++|..|+++|++|++||++++                                         .++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~   56 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT   56 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence            457999999999999999999999999999998764                                         256


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc---------------HHHHHhhhcCCCeeee-ccccC-c
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---------------LNLIGERTYSKDRIVG-AHFFS-P  288 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~---------------~~~la~~~~~~~r~ig-~hf~~-P  288 (496)
                      +||+||.|+|  .....+++.++.+.++ ++++++.+++++               .+.+.+.++ ..++++ .|++. |
T Consensus        57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p  132 (209)
T 2raf_A           57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA  132 (209)
T ss_dssp             CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred             cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence            8999999999  3345678888888777 888888777665               455666554 457777 66642 2


Q ss_pred             CC-----C--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          289 AH-----V--MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       289 ~~-----~--~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      ..     .  .+...++.+  .+++..+.+.++++.+|..++.+++
T Consensus       133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            11     1  123333444  4678999999999999998888876

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=99.36  E-value=2.8e-13  Score=131.68  Aligned_cols=96  Identities=26%  Similarity=0.424  Sum_probs=86.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  209 (267)
T 3r9t_A          165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNA-PL----------------------------------  209 (267)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCC-hH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDV---VEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~---i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++   ++.....+++++++.|...+..++.|+|++|++++|++||+++
T Consensus       210 -a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~  263 (267)
T 3r9t_A          210 -SVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPV  263 (267)
T ss_dssp             -HHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             33478888   8888888899999999999999999999999999999988754

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=99.35  E-value=1.2e-12  Score=126.64  Aligned_cols=96  Identities=26%  Similarity=0.333  Sum_probs=86.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  203 (258)
T 2pbp_A          159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQP-PL----------------------------------  203 (258)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus       204 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  254 (258)
T 2pbp_A          204 -ALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPR  254 (258)
T ss_dssp             -HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence             334788999988888999999999999999999999999999999988654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=99.35  E-value=1.5e-12  Score=126.55  Aligned_cols=96  Identities=21%  Similarity=0.259  Sum_probs=86.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++.+.+++++++..+ |.                                  
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  210 (265)
T 2ppy_A          166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSA-TY----------------------------------  210 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||++.
T Consensus       211 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  261 (265)
T 2ppy_A          211 -AVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPN  261 (265)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             344789999988888999999999999999999999999999999987654

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=99.35  E-value=5.1e-13  Score=129.80  Aligned_cols=96  Identities=19%  Similarity=0.276  Sum_probs=86.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc-CCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH-RRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++.. + |.                                 
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~-p~---------------------------------  207 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVA-PE---------------------------------  207 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSC-HH---------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCC-HH---------------------------------
Confidence            578999999999999999999999999999999999999985 3 32                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAG--LQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~--l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                        +...+|++++.....+++++  ++.|...+..++.|+|++|++++|++||+++
T Consensus       208 --a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~  260 (265)
T 3qxz_A          208 --SAALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPR  260 (265)
T ss_dssp             --HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCC
T ss_pred             --HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCC
Confidence              33478899998888888888  9999999999999999999999999998765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.34  E-value=1.9e-12  Score=129.78  Aligned_cols=123  Identities=21%  Similarity=0.295  Sum_probs=92.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (496)
                      .+||+|||+|.||.++|..|+..|+ +|++||++++.++.....+.+....   .+         ...+++.++|++ ++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~---~~---------~~~~i~~t~d~~ea~   76 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV---VD---------TNVSVRAEYSYEAAL   76 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH---TT---------CCCCEEEECSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhc---cC---------CCCEEEEeCCHHHHh
Confidence            3699999999999999999999998 9999999998887644444333211   11         124677788886 79


Q ss_pred             cCCCEEEEec--cCCh-----------------HHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhhc--CCCeee
Q 010966          225 KDVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIV  281 (496)
Q Consensus       225 ~~aDlVIeav--~e~~-----------------~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~~--~~~r~i  281 (496)
                      ++||+||+++  |+++                 .+++++++++.+++ |++++  +||++.+. +.++....  .|.|++
T Consensus        77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi  154 (331)
T 1pzg_A           77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC  154 (331)
T ss_dssp             TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence            9999999998  7654                 34889999999997 56655  67877664 44444333  577888


Q ss_pred             ec
Q 010966          282 GA  283 (496)
Q Consensus       282 g~  283 (496)
                      |+
T Consensus       155 G~  156 (331)
T 1pzg_A          155 GM  156 (331)
T ss_dssp             EC
T ss_pred             ec
Confidence            87

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=99.34  E-value=1.3e-12  Score=126.49  Aligned_cols=96  Identities=21%  Similarity=0.251  Sum_probs=86.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       161 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  205 (260)
T 1mj3_A          161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-KI----------------------------------  205 (260)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++
T Consensus       206 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~  256 (260)
T 1mj3_A          206 -IVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN  256 (260)
T ss_dssp             -HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             334789999998888999999999999999999999999999999987654

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=99.34  E-value=8.3e-13  Score=129.91  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=86.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  232 (290)
T 3sll_A          188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFS-RP----------------------------------  232 (290)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLL-RSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~l~-~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.... .+++++++.|...+..++ .|+|+++++++|++||+++
T Consensus       233 -a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~  285 (290)
T 3sll_A          233 -GIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAE  285 (290)
T ss_dssp             -HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             33478999999888 899999999999999999 9999999999999998754

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.33  E-value=1.5e-12  Score=125.66  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=86.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++++.+++++++..+ |.                                  
T Consensus       157 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  201 (253)
T 1uiy_A          157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-PT----------------------------------  201 (253)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++
T Consensus       202 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          202 -SLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             -HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence             234788999998888999999999999999999999999999999987653

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=99.33  E-value=6.7e-13  Score=128.61  Aligned_cols=97  Identities=14%  Similarity=0.179  Sum_probs=78.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  207 (260)
T 1sg4_A          163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP-DH----------------------------------  207 (260)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++|
T Consensus       208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          208 -ARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             -HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence             2336888888877777889999999999999999999999999999998765

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=99.32  E-value=1.6e-12  Score=125.66  Aligned_cols=96  Identities=19%  Similarity=0.158  Sum_probs=86.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.                                  
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  202 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMP-TK----------------------------------  202 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++
T Consensus       203 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  253 (257)
T 2ej5_A          203 -AIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPL  253 (257)
T ss_dssp             -HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCC
Confidence             234788999988888999999999999999999999999999999987654

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=126.47  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.++|++++..+ |.                                  
T Consensus       189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  233 (287)
T 2vx2_A          189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLS-RP----------------------------------  233 (287)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus       234 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  284 (287)
T 2vx2_A          234 -VVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPV  284 (287)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence             234788899888888999999999999999999999999999999987654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.31  E-value=3.9e-12  Score=125.73  Aligned_cols=122  Identities=20%  Similarity=0.307  Sum_probs=84.3

Q ss_pred             CcccceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          143 APRRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       143 ~~~~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      ..++++||+|||+|.||.++|..++.+|+  +|+++|++++....+.+ +.+     .            ...+++.+++
T Consensus        10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~d-l~~-----~------------~~~~i~~t~d   71 (303)
T 2i6t_A           10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMD-LEI-----F------------NLPNVEISKD   71 (303)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHH-HHH-----H------------TCTTEEEESC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHH-Hhh-----h------------cCCCeEEeCC
Confidence            34567899999999999999999999999  99999999873222221 110     0            0125667788


Q ss_pred             cccccCCCEEEEec-------------cCChHHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhhcC-CCeeeec
Q 010966          221 YESFKDVDMVIEAI-------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       221 ~~~~~~aDlVIeav-------------~e~~~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      ++++++||+||+++             .++..++++++.++.+++ |++++  +||++.+-..-+...... |.|++|+
T Consensus        72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            99999999999997             899999999999999998 55554  677544222222222222 5688887

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.31  E-value=1.7e-12  Score=122.16  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=102.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .++||+|||+|.||..++..|+..|++|+++|++++.++...           +.|             +..++..+.++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~   82 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVTFQEEAVS   82 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEEEHHHHTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CceecHHHHHh
Confidence            457899999999999999999999999999999988765421           111             12222224578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHH----------hhhcCCCeeeec-ccc-----Cc-
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----------ERTYSKDRIVGA-HFF-----SP-  288 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la----------~~~~~~~r~ig~-hf~-----~P-  288 (496)
                      ++|+||.|+|.+  ....++. +.+.. +++++++.+++++++.+.          +.++ ..++++. ++.     .+ 
T Consensus        83 ~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~  157 (215)
T 2vns_A           83 SPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAG  157 (215)
T ss_dssp             SCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTC
T ss_pred             CCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhccc
Confidence            999999999864  2344554 55555 788999999988876553          3333 2355542 111     11 


Q ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          289 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       289 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                      +...+...++.+  .+++..+.+.++++.+|+.++++++
T Consensus       158 ~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          158 PRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             SCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence            111222223333  3789999999999999999999976

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=99.31  E-value=1.1e-12  Score=127.18  Aligned_cols=94  Identities=26%  Similarity=0.210  Sum_probs=70.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       165 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  209 (262)
T 3r9q_A          165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFP-QQ----------------------------------  209 (262)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.....+++++++.|.. +..++.| |++|++++|++||++.
T Consensus       210 -a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~  258 (262)
T 3r9q_A          210 -CVRADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRH  258 (262)
T ss_dssp             -HHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-----------------
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCC
Confidence             33478999999999999999999999 9999999 9999999999998654

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=99.30  E-value=2.7e-12  Score=124.99  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=86.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  208 (269)
T 1nzy_A          164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP-TH----------------------------------  208 (269)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++|++||+++
T Consensus       209 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  259 (269)
T 1nzy_A          209 -LQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRAD  259 (269)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTT
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Confidence             234788899988888999999999999999999999999999999987654

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=99.30  E-value=5.8e-13  Score=128.76  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=50.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.++|++++..+ |.                                  
T Consensus       163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  207 (256)
T 3qmj_A          163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKP-IS----------------------------------  207 (256)
T ss_dssp             HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       |...+|++++.....+++++++.|...|..++.|+++++++++|++||+
T Consensus       208 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          208 -SLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             -HHHHHHHHHHCC-------------------------------------
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence             3347899999888889999999999999999999999999999999884

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.30  E-value=2.8e-12  Score=124.49  Aligned_cols=95  Identities=16%  Similarity=0.064  Sum_probs=84.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.++|++++..+ |.                                  
T Consensus       168 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  212 (264)
T 1wz8_A          168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP-KE----------------------------------  212 (264)
T ss_dssp             HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++..... ++++++.|.+.+..++.|+++++++++|++||+++
T Consensus       213 -a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  262 (264)
T 1wz8_A          213 -ALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPE  262 (264)
T ss_dssp             -HHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCC
Confidence             234688888888877 89999999999999999999999999999988754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.30  E-value=1.3e-11  Score=125.62  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=104.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhhhcceecccCcc-c
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKTISLLTGVLDYE-S  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~~~i~~~~~~~-~  223 (496)
                      |+||+|||+|.||.++|..|+++|++|++||++++.++...+.           +..  .... ......+..+++.+ .
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~   82 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK-----------RENVLFLKG-VQLASNITFTSDVEKA   82 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH-----------TBCTTTSTT-CBCCTTEEEESCHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------Ccccccccc-cccccceeeeCCHHHH
Confidence            4499999999999999999999999999999999877654321           100  0000 00112345556654 4


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHH----HHhhCCC-CeeEeccCCcccHH---HHHhhhcCCCeeeeccc----cCcCC-
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFAD----LEKYCPP-HCILASNTSTIDLN---LIGERTYSKDRIVGAHF----FSPAH-  290 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~----l~~~~~~-~~il~sntS~~~~~---~la~~~~~~~r~ig~hf----~~P~~-  290 (496)
                      ++++|+||.|||.  ....+++.+    +.+.+++ +++|++.++++++.   .+.+.+..   .++.|.    ..|.. 
T Consensus        83 ~~~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~---~~~~~~~~v~~gp~~~  157 (366)
T 1evy_A           83 YNGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFA  157 (366)
T ss_dssp             HTTCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCH
T ss_pred             HcCCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHH---HCCCCcEEEEeCCChH
Confidence            7899999999985  456778888    8888888 88888877666543   22222211   112111    12221 


Q ss_pred             -----CCCeEEEEeCCCCCHHHHHHHHHHHHHc--CCceEEecCc
Q 010966          291 -----VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC  328 (496)
Q Consensus       291 -----~~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~  328 (496)
                           ..+...++.+  .+++..+.+.+++...  |..+....|.
T Consensus       158 ~~~~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~g~~~~~~~di  200 (366)
T 1evy_A          158 IEVATGVFTCVSIAS--ADINVARRLQRIMSTGDRSFVCWATTDT  200 (366)
T ss_dssp             HHHHTTCCEEEEEEC--SSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred             HHHHhCCceEEEEec--CCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence                 1222223332  4678899999999999  7776666663

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=99.29  E-value=2.2e-12  Score=125.07  Aligned_cols=96  Identities=19%  Similarity=0.209  Sum_probs=85.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++.+.++|++++..+ |.                                  
T Consensus       160 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  204 (261)
T 1ef8_A          160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-PL----------------------------------  204 (261)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ--KLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~--~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.|.  .++.|+++++++++|++||+++
T Consensus       205 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~  257 (261)
T 1ef8_A          205 -AIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPN  257 (261)
T ss_dssp             -HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCC
Confidence             33478889988888889999999999999  9999999999999999987654

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=99.29  E-value=7e-13  Score=130.84  Aligned_cols=98  Identities=22%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++...+|.                                  
T Consensus       194 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~----------------------------------  239 (298)
T 3qre_A          194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPS----------------------------------  239 (298)
T ss_dssp             HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHH----------------------------------
Confidence            5789999999999999999999999999999999999999851132                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       |...+|++++.....++++++..|...+..++.|+|++|++++|++||+++-
T Consensus       240 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f  291 (298)
T 3qre_A          240 -SMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQF  291 (298)
T ss_dssp             -HHHHHHHHHHGGGGC-------------------------------------
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence             3347899999998889999999999999999999999999999999987653

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=99.29  E-value=1.7e-12  Score=127.57  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=80.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       183 l~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  227 (291)
T 2fbm_A          183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-PI----------------------------------  227 (291)
T ss_dssp             HHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HhhcCCCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF-FAQRGTSKVPG  136 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF-~~kr~~~~~~~  136 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|+++++.+| ++||+++ |.+
T Consensus       228 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~-f~~  282 (291)
T 2fbm_A          228 -VLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAA-FPP  282 (291)
T ss_dssp             -HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC------------
T ss_pred             -HHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-CCC
Confidence             23478889988777788999999999999999999999999999 9988764 433

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=99.29  E-value=2.1e-12  Score=126.35  Aligned_cols=95  Identities=18%  Similarity=0.195  Sum_probs=74.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       185 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  229 (280)
T 2f6q_A          185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP-PN----------------------------------  229 (280)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~  131 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||++
T Consensus       230 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          230 -ALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             -HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             -HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence             23368888888777788999999999999999999999999999999864

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=99.28  E-value=7e-12  Score=126.47  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=87.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC-------CCcchhhcc---cC-CCC--CchhHHHHH-
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR-------RPWVATLYK---TD-KIE--PLGEAREIF-   66 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~-------~p~~~~~~~---~~-~~~--~~~~~~~~~-   66 (496)
                      |+|||++|+|+||+++||||+|||+++|++.+.+++.+.....       .+.......   .. -+.  +....-..+ 
T Consensus       168 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~  247 (353)
T 4hdt_A          168 AALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALR  247 (353)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5799999999999999999999999999999999887643210       000000000   00 000  000000000 


Q ss_pred             ----HHHHHHHHhhCC-CCCcHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--hhcCCCCC
Q 010966           67 ----KFARAQARKQAP-NLTHPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLLRSETCKSLVHIFF--AQRGTSKV  134 (496)
Q Consensus        67 ----~~~~~~~~~~~~-~~pA~~~~k~~i~~~~~~-~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~--~kr~~~~~  134 (496)
                          .++.....+-.+ .+.+...+|+.++.+... +++++|+.|.+.+..++.|+|++|++++|+  +||+|+-.
T Consensus       248 ~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~  323 (353)
T 4hdt_A          248 AHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWR  323 (353)
T ss_dssp             HHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCS
T ss_pred             hcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCC
Confidence                011122222233 344788899999988876 799999999999999999999999999998  88877643

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=99.28  E-value=1.3e-12  Score=126.58  Aligned_cols=96  Identities=16%  Similarity=0.191  Sum_probs=85.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       165 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  209 (261)
T 2gtr_A          165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCN-PV----------------------------------  209 (261)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...+..++.|+++++++.+|++||+++
T Consensus       210 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  260 (261)
T 2gtr_A          210 -VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE  260 (261)
T ss_dssp             -HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence             234788899887777889999999999999999999999999999998753

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=99.27  E-value=4e-12  Score=124.19  Aligned_cols=96  Identities=17%  Similarity=0.124  Sum_probs=85.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+|||++++|+||+++||||+|||+ +++++++.++|++++..+ |.                                 
T Consensus       172 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-p~---------------------------------  217 (275)
T 1dci_A          172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-PV---------------------------------  217 (275)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-HH---------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC-HH---------------------------------
Confidence            5789999999999999999999999 999999999999999862 32                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh---cCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ---RGTS  132 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k---r~~~  132 (496)
                        +...+|++++.+...+++++++.|...+..++.|+|+++++++|++|   |+++
T Consensus       218 --a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~  271 (275)
T 1dci_A          218 --AVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT  271 (275)
T ss_dssp             --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred             --HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence              33478899998888899999999999999999999999999999998   6543

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=99.26  E-value=6.4e-12  Score=122.18  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=83.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|  ++++++++.++|++++..+ |.                                  
T Consensus       171 l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~-~~----------------------------------  213 (267)
T 3oc7_A          171 YYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGS-PQ----------------------------------  213 (267)
T ss_dssp             HHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999  7889999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...+..++.|+|+++++++|++||+++
T Consensus       214 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  264 (267)
T 3oc7_A          214 -GLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPN  264 (267)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCT
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             334788899988888899999999999999999999999999999998754

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=99.25  E-value=4e-12  Score=123.48  Aligned_cols=94  Identities=20%  Similarity=0.206  Sum_probs=76.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||  +++++|.++|++++..+ |.                                  
T Consensus       163 l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~-~~----------------------------------  205 (266)
T 3fdu_A          163 LLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALP-LA----------------------------------  205 (266)
T ss_dssp             HHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            578999999999999999999998  89999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                       |...+|++++... .+++++++.|...+..++.|+|+++++++|++||++..
T Consensus       206 -a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~  256 (266)
T 3fdu_A          206 -SLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDF  256 (266)
T ss_dssp             -HHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC-------
T ss_pred             -HHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence             3346888887765 46889999999999999999999999999999998754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.25  E-value=1.3e-10  Score=119.54  Aligned_cols=201  Identities=17%  Similarity=0.228  Sum_probs=122.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhh----cceecccCc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTI----SLLTGVLDY-  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~----~~i~~~~~~-  221 (496)
                      |||+|||+|.||..+|..|++ |++|++||+++++++...+           .+. +........+    .++..++++ 
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~   68 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSK   68 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence            489999999999999999999 9999999999998776431           111 1111112111    245666775 


Q ss_pred             ccccCCCEEEEeccCCh---------HHHHHHHHHHHhhCCCCeeEec-cCCcc-cHHHHHhhhcCCCeeee-ccccCcC
Q 010966          222 ESFKDVDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILAS-NTSTI-DLNLIGERTYSKDRIVG-AHFFSPA  289 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~---------~~k~~v~~~l~~~~~~~~il~s-ntS~~-~~~~la~~~~~~~r~ig-~hf~~P~  289 (496)
                      +.+++||+||.|||...         ....++++.+.+ +.++++|+. .|.+. ..+++.+.+... .++. -.+..|.
T Consensus        69 ~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~v~~~Pe~~~~G  146 (402)
T 1dlj_A           69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-RIIFSPEFLRES  146 (402)
T ss_dssp             HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-CEEECCCCCCTT
T ss_pred             HHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-eEEECCccccCc
Confidence            56789999999999863         145677788888 788887764 33333 334666655432 2211 0111221


Q ss_pred             CC-----CCeEEEEeCCCC----CHHHHHHHHHHHHHcCC--c-eEEecCc-ccc---hhhchHH----HHHHHHHHHHH
Q 010966          290 HV-----MPLLEIVRTNQT----SPQVIVDLLDIGKKIKK--T-PIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE  349 (496)
Q Consensus       290 ~~-----~~lveiv~~~~t----~~e~~~~~~~l~~~lGk--~-~v~v~d~-~G~---i~nril~----~~~~ea~~l~~  349 (496)
                      ..     .+--.++.+...    ..+..+.+.+++...+.  . ++++.+. .+.   ++++.+.    .+++|+..+.+
T Consensus       147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~  226 (402)
T 1dlj_A          147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE  226 (402)
T ss_dssp             STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11     010123333321    12556777777765332  2 5666652 221   3344432    45799888765


Q ss_pred             -cCCCHHHHHHHHH
Q 010966          350 -RGTDLYLIDRAIT  362 (496)
Q Consensus       350 -~g~~~~~ID~a~~  362 (496)
                       .|++++++-+++.
T Consensus       227 ~~Gid~~~v~~~~~  240 (402)
T 1dlj_A          227 SRKLNSHMIIQGIS  240 (402)
T ss_dssp             HTTCCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHhc
Confidence             7999999999886

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=99.25  E-value=6.9e-12  Score=122.37  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=79.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       173 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  217 (275)
T 4eml_A          173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKS-PL----------------------------------  217 (275)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.... ......+.|.+.+..++.|+|++|++.+|++||++.
T Consensus       218 -a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~  267 (275)
T 4eml_A          218 -AIRCLKAAFNADCD-GQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPD  267 (275)
T ss_dssp             -HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHhhhc-cchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             23478888887653 233445677888889999999999999999998764

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=99.23  E-value=9.4e-12  Score=121.36  Aligned_cols=94  Identities=21%  Similarity=0.303  Sum_probs=81.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       171 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  215 (273)
T 2uzf_A          171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHS-PT----------------------------------  215 (273)
T ss_dssp             HHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEA-EDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~-~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++  ...++.++++.|. +.+..++.|+++++++++|++||+++
T Consensus       216 -a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~  265 (273)
T 2uzf_A          216 -ALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPD  265 (273)
T ss_dssp             -HHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCC
Confidence             2236777777  3356889999999 99999999999999999999987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.22  E-value=5.6e-11  Score=118.55  Aligned_cols=171  Identities=16%  Similarity=0.106  Sum_probs=113.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .++||+|||+|.||+.+|..|+++|++|++| ++++.++...+           .|......-.....++..+++.+.++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA-----------TGLRLETQSFDEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH-----------HCEEEECSSCEEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh-----------CCeEEEcCCCcEEEeeeeeCCHHHcC
Confidence            4679999999999999999999999999999 99887765432           12100000000112344566777788


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeeeeccc------cCcCCC---CCeE
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHF------FSPAHV---MPLL  295 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~ig~hf------~~P~~~---~~lv  295 (496)
                      ++|+||.|||..  ...++++++.++++++++|++.+.++.. +.+.+.++  .++++...      ..|-+.   ....
T Consensus        86 ~~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~  161 (318)
T 3hwr_A           86 GADLVLFCVKST--DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGE  161 (318)
T ss_dssp             TCSEEEECCCGG--GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEcccc--cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCce
Confidence            999999999976  3468889999999999999999999988 45666654  45554211      123221   1111


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhch
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM  336 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nri  336 (496)
                       +.-+.   .+..+.+.++|...|.......|..+.....+
T Consensus       162 -~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl  198 (318)
T 3hwr_A          162 -LVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKL  198 (318)
T ss_dssp             -EEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHH
T ss_pred             -EEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHH
Confidence             22222   23456788889998988777777555443333

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=99.22  E-value=2.6e-12  Score=123.77  Aligned_cols=94  Identities=10%  Similarity=0.057  Sum_probs=65.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++.+.+++++++..+ |.                                  
T Consensus       157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  201 (250)
T 2a7k_A          157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-AS----------------------------------  201 (250)
T ss_dssp             HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+
T Consensus       202 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          202 -AFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             -HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence             2347888888877778899999999999999999999999999999874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.22  E-value=4.3e-11  Score=122.14  Aligned_cols=169  Identities=12%  Similarity=-0.016  Sum_probs=107.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL  214 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~  214 (496)
                      ++||+|||+|.||++||..|+++|       ++|++||++++     .++...+.        .......+.  .....+
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~--------~~~~~~~~~--~~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK--------HENTKYLKG--VPLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH--------CBCTTTSTT--CBCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc--------CcccccCCc--ccCcCC
Confidence            568999999999999999999999       99999999987     44432210        000000000  001124


Q ss_pred             eecccCcc-cccCCCEEEEeccCChHHHHHHHHHHHh----hCCCCeeEeccCCcccH--------HHH-HhhhcCCCee
Q 010966          215 LTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK----YCPPHCILASNTSTIDL--------NLI-GERTYSKDRI  280 (496)
Q Consensus       215 i~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~----~~~~~~il~sntS~~~~--------~~l-a~~~~~~~r~  280 (496)
                      +..+++.+ .+++||+||+|||.  ....+++.++.+    .++++++++|.++++++        .++ .+.++.+. .
T Consensus        91 i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~  167 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPC-S  167 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCE-E
T ss_pred             eEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCE-E
Confidence            55666664 47899999999995  467788899988    88899999888876554        222 22222111 1


Q ss_pred             eeccccCcC---CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          281 VGAHFFSPA---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       281 ig~hf~~P~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      +-..+..+.   ...+...++.+  .+++..+.+.+++...|..+....|..|
T Consensus       168 v~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~  218 (375)
T 1yj8_A          168 ALSGANIAMDVAMENFSEATIGG--NDKDSLVIWQRVFDLPYFKINCVNETIE  218 (375)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred             EEeCCchHHHHHhCCCeEEEEec--CCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            111111111   11232223333  4678899999999999988888777543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.21  E-value=9e-11  Score=117.07  Aligned_cols=141  Identities=21%  Similarity=0.251  Sum_probs=96.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.||.++|..|+.+|+  +|+++|++++.++.....+.+..    ...         ...++.. +++++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~----~~~---------~~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT----PFT---------RRANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----GGS---------CCCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhh----hhc---------CCcEEEe-CCHHHhC
Confidence            489999999999999999999999  99999999987775433322211    000         0123444 3677899


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhh-c-CCCeeeeccccC
Q 010966          226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERT-Y-SKDRIVGAHFFS  287 (496)
Q Consensus       226 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~-~-~~~r~ig~hf~~  287 (496)
                      +||+||++++..              ..++++++.++.++++ ++++  +||.+... +.+.... . .|.|++|+    
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence            999999999852              2467889999999864 5533  46655442 3444333 2 46778776    


Q ss_pred             cCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010966          288 PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP  322 (496)
Q Consensus       288 P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~  322 (496)
                                    .|..++......+.+.+|..+
T Consensus       141 --------------~t~ld~~r~~~~la~~lgv~~  161 (319)
T 1a5z_A          141 --------------GTVLDTARLRTLIAQHCGFSP  161 (319)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHTCCG
T ss_pred             --------------CccHHHHHHHHHHHHHhCcCH
Confidence                          355566666666777787543

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=99.21  E-value=5.4e-12  Score=122.39  Aligned_cols=96  Identities=16%  Similarity=0.238  Sum_probs=81.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecC-CchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVA-PNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~-~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+|||++++|+||+++||||+||| ++++.++|.++|++++..+ |.                                 
T Consensus       165 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-~~---------------------------------  210 (263)
T 3lke_A          165 LLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY-VP---------------------------------  210 (263)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSC-HH---------------------------------
T ss_pred             HHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCC-HH---------------------------------
Confidence            578999999999999999999999 9999999999999999862 32                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                        +...+|++++.....+++++++.|...+..++.|+|+++++++|.+++.+.
T Consensus       211 --a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~  261 (263)
T 3lke_A          211 --AIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHH  261 (263)
T ss_dssp             --HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC-------
T ss_pred             --HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCC
Confidence              334788999988888899999999999999999999999999999988653

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=99.21  E-value=1.2e-11  Score=120.63  Aligned_cols=96  Identities=20%  Similarity=0.277  Sum_probs=81.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchH----HHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL----VSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ   76 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l----~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (496)
                      |+|||++++|+||+++||||+|+|++++    .+.+.+++++++..+ |.                              
T Consensus       169 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~-p~------------------------------  217 (272)
T 1hzd_A          169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQG-PV------------------------------  217 (272)
T ss_dssp             HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSC-HH------------------------------
T ss_pred             HHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCC-HH------------------------------
Confidence            5789999999999999999999998875    446777777777652 22                              


Q ss_pred             CCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        77 ~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                           +...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus       218 -----a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  268 (272)
T 1hzd_A          218 -----AMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPR  268 (272)
T ss_dssp             -----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCC
T ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence                 234788999988888999999999999999999999999999999988754

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=99.21  E-value=5.6e-12  Score=123.17  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       170 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p~----------------------------------  214 (276)
T 2j5i_A          170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKN-PV----------------------------------  214 (276)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hCCH-HHHHHHHHHHhhc-CCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL--LRSE-TCKSLVHIFFAQR-GTSKV  134 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l--~~s~-~a~~~i~aF~~kr-~~~~~  134 (496)
                       +...+|++++.....+++++++.|.+.+..+  +.|+ |+++++++|++|| +.+++
T Consensus       215 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~  271 (276)
T 2j5i_A          215 -VLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGL  271 (276)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCc
Confidence             3347899999888889999999998887776  6799 9999999999998 43433

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.20  E-value=1.5e-10  Score=117.03  Aligned_cols=168  Identities=18%  Similarity=0.057  Sum_probs=108.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQE-KFEKTIS  213 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~  213 (496)
                      ++||+|||+|.||+++|..|+++|       ++|++||++++     ..+...+           .+..... .-.....
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~   76 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINT-----------QHENVKYLPGHKLPP   76 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHH-----------HSCCTTTSTTCCCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHh-----------cCcccccCCcccCcc
Confidence            479999999999999999999999       99999999987     5544221           1100000 0000112


Q ss_pred             ceecccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--------HHH-HhhhcCCCeeeec
Q 010966          214 LLTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLI-GERTYSKDRIVGA  283 (496)
Q Consensus       214 ~i~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--------~~l-a~~~~~~~r~ig~  283 (496)
                      ++..+++.+ .+++||+||+|||+.  ...+++.++.+.++++++|+|.++++++        .++ .+.++.+ ..+-.
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~~~--~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVPHQ--FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLM  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCCGG--GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEE
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEE
Confidence            455566664 478999999999964  5778999999999999999988877652        222 2222211 11111


Q ss_pred             cccCcCC---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          284 HFFSPAH---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       284 hf~~P~~---~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      .|..+..   ..+...++.+  .+++..+.+.++++..|..+.+..|..+
T Consensus       154 gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~  201 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIGC--KDPAQGQLLKELMQTPNFRITVVQEVDT  201 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHHCBTTEEEEEESCHHH
T ss_pred             CCCcHHHHHhcCCceEEEEE--CCHHHHHHHHHHhCCCCEEEEEcCCchH
Confidence            1221111   1222222332  4678899999999999988877776433

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=99.20  E-value=9.6e-12  Score=122.13  Aligned_cols=98  Identities=15%  Similarity=0.217  Sum_probs=80.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       187 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~-~~----------------------------------  231 (289)
T 3t89_A          187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNS-PM----------------------------------  231 (289)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPG  136 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~  136 (496)
                       |...+|++++.... ......+.|.+.+..++.|+|++|++++|++||++. |.+
T Consensus       232 -a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~-f~~  284 (289)
T 3t89_A          232 -ALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPD-FSK  284 (289)
T ss_dssp             -HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCC-CTT
T ss_pred             -HHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC-CCC
Confidence             23478888887643 233444578888889999999999999999999764 444

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.20  E-value=4.2e-11  Score=118.90  Aligned_cols=122  Identities=18%  Similarity=0.308  Sum_probs=84.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+..            .......+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~------------~~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhH------------hhcCCCeEEEECCCHHHHCC
Confidence            699999999999999999999997 99999999887764322221111            00111245777788889999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhh-hc-CCCeeeec
Q 010966          227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGER-TY-SKDRIVGA  283 (496)
Q Consensus       227 aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~-~~-~~~r~ig~  283 (496)
                      ||+||+++              .++..+++++++++.+++ +++++  +||..... ..+... .. .|.|++|+
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~-t~~~~~~~~~~~~rviG~  143 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAM-TYLAAEVSGFPKERVIGQ  143 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHH-HHHHHHHcCCCHHHEEEC
Confidence            99999997              445678889999999987 66654  45533322 222222 22 25677776

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=99.20  E-value=9.1e-12  Score=122.17  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=80.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       171 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~-p~----------------------------------  215 (287)
T 3gkb_A          171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALP-DG----------------------------------  215 (287)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-TT----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999863 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       |...+|++++..   ...++++.|...+..++.|+|+++++++|++||+
T Consensus       216 -a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~  261 (287)
T 3gkb_A          216 -VIEAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA  261 (287)
T ss_dssp             -HHHHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred             -HHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence             334678887763   3468999999999999999999999999999986

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=99.19  E-value=1.2e-11  Score=120.71  Aligned_cols=91  Identities=21%  Similarity=0.174  Sum_probs=81.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+||  ++++++|.++|++++..+ |.                                  
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~-~~----------------------------------  228 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELP-QQ----------------------------------  228 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            57899999999999999999999  889999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR  129 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr  129 (496)
                       +...+|++++.....+++++++.|...+..++.|+|+++++.+|++||
T Consensus       229 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          229 -AVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             -HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence             334788999888888899999999999999999999999999999986

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=99.19  E-value=3.7e-12  Score=127.32  Aligned_cols=95  Identities=17%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++|+++|.++|++++..+ |.                                  
T Consensus       232 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~-p~----------------------------------  276 (334)
T 3t8b_A          232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-PQ----------------------------------  276 (334)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.... .+...+..|.+.+..++.|+|++|++.+|++||++.
T Consensus       277 -a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~  326 (334)
T 3t8b_A          277 -AQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPD  326 (334)
T ss_dssp             -HHHHHHHHHHHTCC-CC----------------------------------
T ss_pred             -HHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             33478888887654 455566778888899999999999999999999764

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=99.19  E-value=1.6e-11  Score=120.56  Aligned_cols=90  Identities=21%  Similarity=0.201  Sum_probs=81.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||++++++.+.++|++++..+ |.                                  
T Consensus       168 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~-p~----------------------------------  212 (289)
T 3h0u_A          168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFP-RD----------------------------------  212 (289)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFA  127 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~  127 (496)
                       |...+|++++.... +++++++.|...|..++.|+|+++++++|++
T Consensus       213 -a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          213 -ALIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             -HHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence             33478899988877 8999999999999999999999999999999

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.18  E-value=1.6e-11  Score=135.06  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=80.2

Q ss_pred             ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (496)
Q Consensus       329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (496)
                      ++.|.+|++.+++||+++++++|+  +++|||.+|. |+|||.   |||+++|.+|++.+++.++.+ ..+++++.|+++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~  702 (715)
T 1wdk_A          624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAK  702 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHH
Confidence            568999999999999999999997  8999999999 999998   999999999999999999999 888977889999


Q ss_pred             HHHHHhcCCCccccCceeee
Q 010966          403 IPIMQEDKRAGETTRKGFYL  422 (496)
Q Consensus       403 l~~~~~~G~lG~k~g~GFY~  422 (496)
                      |.+|+++|       ++||.
T Consensus       703 l~~~~~~g-------~~f~~  715 (715)
T 1wdk_A          703 LREMAKNG-------QSFFG  715 (715)
T ss_dssp             HHHHHHTT-------CCSCC
T ss_pred             HHHHHHcC-------CCCCC
Confidence            99999986       67883

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.18  E-value=1.4e-10  Score=115.12  Aligned_cols=167  Identities=11%  Similarity=0.022  Sum_probs=105.9

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcceecc
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-----N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGV  218 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-----G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~  218 (496)
                      .++||+|||+|.||+.+|..|+++     | ++|++||+ ++.++...+          +.|..... .-......+..+
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~   75 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRA----------AGGLRVVTPSRDFLARPTCVT   75 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHH----------HTSEEEECSSCEEEECCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHh----------cCCeEEEeCCCCeEEecceEe
Confidence            346999999999999999999999     9 99999999 665554321          02210000 000000112233


Q ss_pred             cCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeeeeccccCcCCC------
Q 010966          219 LDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFSPAHV------  291 (496)
Q Consensus       219 ~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~ig~hf~~P~~~------  291 (496)
                      ++.+.+.++|+||.|||...  -.+++.++.+.+.++++|++.+.++.. +.+.+.++.. +++....+.++..      
T Consensus        76 ~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~  152 (317)
T 2qyt_A           76 DNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLI  152 (317)
T ss_dssp             SCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEE
T ss_pred             cCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEE
Confidence            44556789999999998764  367888898888888888887777776 4566655432 3333333322211      


Q ss_pred             ---CCe-EEEEeC--CCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          292 ---MPL-LEIVRT--NQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       292 ---~~l-veiv~~--~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                         ... +.++..  +..+.+.. .+.+++...|....+.+|
T Consensus       153 ~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d  193 (317)
T 2qyt_A          153 TLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD  193 (317)
T ss_dssp             EEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred             EEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence               111 111332  33457777 899999999987776665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.18  E-value=1.4e-11  Score=135.57  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (496)
Q Consensus       329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (496)
                      ++.|++|++.+++||+++++++|+  ++.|||.+|+ |+|||.   |||+++|.+|++.+++.++.+...+++++.|+++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~  703 (725)
T 2wtb_A          624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAF  703 (725)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHH
Confidence            467999999999999999999997  9999999999 999998   9999999999999999999999989988889999


Q ss_pred             HHHHHhcCCCccccCceeee
Q 010966          403 IPIMQEDKRAGETTRKGFYL  422 (496)
Q Consensus       403 l~~~~~~G~lG~k~g~GFY~  422 (496)
                      |.+|+++|       ++||.
T Consensus       704 l~~~~~~g-------~~f~~  716 (725)
T 2wtb_A          704 LAERGSKG-------VLLSA  716 (725)
T ss_dssp             HHHHHHHT-------CCSSS
T ss_pred             HHHHHHcC-------CCccc
Confidence            99999986       78985

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.18  E-value=9.3e-11  Score=120.44  Aligned_cols=154  Identities=13%  Similarity=0.073  Sum_probs=110.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      ++||+|||+|.||.++|..|..+      |++|++.+++.+ ..+.+           .+.|....       +. ...+
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~-------d~-ta~s  114 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE-------SG-TLGD  114 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT-------TT-CEEE
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe-------cC-CCCC
Confidence            37999999999999999999999      999987776543 22222           12342210       00 0112


Q ss_pred             CcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHh---hhcCCCeeeeccccCcCCC-----
Q 010966          220 DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFSPAHV-----  291 (496)
Q Consensus       220 ~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~---~~~~~~r~ig~hf~~P~~~-----  291 (496)
                      ..+.+++||+||.++|....  .+++.++.++++++++| +..+++++..+.+   .++....++.+||..|.+.     
T Consensus       115 ~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y  191 (525)
T 3fr7_A          115 IWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY  191 (525)
T ss_dssp             HHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHH
T ss_pred             HHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHH
Confidence            23567899999999997543  46888999999999985 7788999988875   3334458999999999763     


Q ss_pred             ----------CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceE
Q 010966          292 ----------MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI  323 (496)
Q Consensus       292 ----------~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v  323 (496)
                                ++. -+..+...+.+..+.+..++..+|...+
T Consensus       192 ~~G~~~~g~Gv~~-liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          192 VQGKEINGAGINS-SFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHTTSTTCSCCE-EEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             hcccccccCCccE-EEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence                      331 2334445677889999999999999754

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=99.17  E-value=1e-11  Score=120.05  Aligned_cols=90  Identities=23%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.++|++++..+ |.                                  
T Consensus       169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  213 (258)
T 3lao_A          169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAA-PL----------------------------------  213 (258)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~  126 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       214 -a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          214 -AVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             -HHHHHHHHHHHHTC-------------------------------
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence             334789999998888999999999999999999999999999995

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.17  E-value=2.2e-10  Score=115.08  Aligned_cols=158  Identities=15%  Similarity=0.063  Sum_probs=93.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      -+||+|||+|.||+.+|..|+++|++|++||++++.++...+           .|. ......  .+ .+..+++.++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~-----------~g~~~~~~~~--~~-~~~~~~~~~~~~   79 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV-----------SHTSPYVEES--KI-TVRATNDLEEIK   79 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------HSCBTTBTTC--CC-CSEEESCGGGCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------hCCcccCCCC--ee-eEEEeCCHHHhc
Confidence            369999999999999999999999999999999987765432           121 000000  00 244455654488


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH---HHHhhhcC--CC-eeeeccccCcC---CCCCeEE
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RIVGAHFFSPA---HVMPLLE  296 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~---~la~~~~~--~~-r~ig~hf~~P~---~~~~lve  296 (496)
                      ++|+||.|||. . .-.+++.++.+   +++++++.+.+++..   .+++.+..  +. ..+...|..+.   ...+...
T Consensus        80 ~aDvVil~vk~-~-~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~  154 (335)
T 1z82_A           80 KEDILVIAIPV-Q-YIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAV  154 (335)
T ss_dssp             TTEEEEECSCG-G-GHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEE
T ss_pred             CCCEEEEECCH-H-HHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEE
Confidence            99999999985 3 34455555443   677777666554431   22222210  10 11111122111   1122222


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEecCc
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  328 (496)
                      ++.+.  +   .+.+.++++..|..+.+..|.
T Consensus       155 ~~g~~--~---~~~~~~ll~~~g~~~~~~~di  181 (335)
T 1z82_A          155 TLAGE--N---SKELQKRISTEYFRVYTCEDV  181 (335)
T ss_dssp             EEEET--T---HHHHHHHHCCSSEEEEEESCH
T ss_pred             EEEeh--h---HHHHHHHhCCCCEEEEecCch
Confidence            22322  2   678899999999887776663

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.17  E-value=3.5e-11  Score=117.87  Aligned_cols=162  Identities=14%  Similarity=0.002  Sum_probs=105.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |||+|||+|.||+.+|..|+++|++|++||++++.++..           ...+...    ......+. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~----~~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG----SIFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS----CEEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCC----ceeeeeee-ecCccccCCC
Confidence            489999999999999999999999999999998643321           0011000    00001112 2334567899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCCCeee-ecccc-----Cc-C-CC-CCeEEE
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIV-GAHFF-----SP-A-HV-MPLLEI  297 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~~r~i-g~hf~-----~P-~-~~-~~lvei  297 (496)
                      |+||.|+|.+.  ..+++.++.+.++++++|++.++++... .+.+.++  . ++ |.+++     .| + +. ...+.+
T Consensus        65 d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p~~~~~~~g~~~i  139 (291)
T 1ks9_A           65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGNVIIHVANGITHI  139 (291)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETTEEEEEECCCEEE
T ss_pred             CEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCCEEEEecccceEE
Confidence            99999999764  4678889999999899888877777653 4444432  2 43 43332     34 1 01 111223


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      .... .+++..+.+.++++.+|..+.+.+|..+.
T Consensus       140 ~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~  172 (291)
T 1ks9_A          140 GPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAE  172 (291)
T ss_dssp             EESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHH
T ss_pred             ccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHH
Confidence            3322 34567788999999999988887764433

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=99.17  E-value=2.2e-11  Score=118.66  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=73.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  215 (272)
T 3qk8_A          171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGA-QN----------------------------------  215 (272)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~---~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++....   .+++..++.|    ..++.|+|+++++++|++||+++
T Consensus       216 -a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~  265 (272)
T 3qk8_A          216 -AIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPAR  265 (272)
T ss_dssp             -HHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCC
Confidence             23367777765443   2344444444    47889999999999999998764

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=99.15  E-value=1.7e-11  Score=118.89  Aligned_cols=92  Identities=11%  Similarity=0.047  Sum_probs=70.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       167 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  211 (263)
T 3l3s_A          167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARN-QA----------------------------------  211 (263)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k  128 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|++|++++|-..
T Consensus       212 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~  258 (263)
T 3l3s_A          212 -PLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH  258 (263)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence             33478999999988999999999999999999999999999999653

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.13  E-value=2e-10  Score=113.74  Aligned_cols=120  Identities=19%  Similarity=0.303  Sum_probs=83.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.||.++|..++.+|+  +|+++|+++++++.....        ...+. .   .. ...+++. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~--------l~~~~-~---~~-~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED--------IAHAA-P---VS-HGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HTTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh--------hhhhh-h---hc-CCeEEEE-CCHHHhC
Confidence            489999999999999999999999  999999998866532211        11111 0   00 0123443 5678899


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhhcCCCeeeec
Q 010966          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYSKDRIVGA  283 (496)
Q Consensus       226 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~~~~~r~ig~  283 (496)
                      +||+||+++  |.            +..+++++++++.+++ +++++  +||++.+....+.... .|+|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  43            4567889999999986 55544  5776665444444444 67888886

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.12  E-value=1.8e-09  Score=111.19  Aligned_cols=201  Identities=17%  Similarity=0.164  Sum_probs=123.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcceec
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTG  217 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (496)
                      .|.+|+|||+|.||..+|..|+..|++|+.+|+|+++++...+.        +...+.+.++            -+++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCeeE
Confidence            57899999999999999999999999999999999998874321        1111111112            246778


Q ss_pred             ccCcc-cccCCCEEEEeccC--------ChHHHHHHHHHHHhhCC---CCeeEeccCCcccH---HHHHh-hhcCCCeee
Q 010966          218 VLDYE-SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCP---PHCILASNTSTIDL---NLIGE-RTYSKDRIV  281 (496)
Q Consensus       218 ~~~~~-~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~---~~~il~sntS~~~~---~~la~-~~~~~~r~i  281 (496)
                      +++.+ ++++||++|.|||.        |+.......+.|.++++   ++++|+. .||.++   +++.. .+....  -
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~--~  164 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEA--G  164 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTT--T
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhC--C
Confidence            88874 58999999999974        33344556666766664   4455543 344443   22221 111110  0


Q ss_pred             eccc---cCcCCCCCe---------EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc---hhhchHH----HHHH
Q 010966          282 GAHF---FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFF----PYTQ  342 (496)
Q Consensus       282 g~hf---~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~---i~nril~----~~~~  342 (496)
                      |..|   ++|-...+.         --++-| .+++...+.+.++.+.+....++.......   ++.+.+.    +++|
T Consensus       165 ~~~f~v~~~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~N  243 (444)
T 3vtf_A          165 GVKFSVASNPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFAN  243 (444)
T ss_dssp             TCCCEEEECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeecCcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222   244322110         002222 146778888899998887655554422222   3344443    4689


Q ss_pred             HHHHHHH-cCCCHHHHHHHHH
Q 010966          343 AAFLLVE-RGTDLYLIDRAIT  362 (496)
Q Consensus       343 ea~~l~~-~g~~~~~ID~a~~  362 (496)
                      |...+.+ .|+++.++-+++.
T Consensus       244 Ela~ice~~GiDv~eV~~a~~  264 (444)
T 3vtf_A          244 EVGLLAKRLGVDTYRVFEAVG  264 (444)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHhc
Confidence            9888765 6999999888884

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=99.12  E-value=5.1e-11  Score=115.64  Aligned_cols=95  Identities=15%  Similarity=0.076  Sum_probs=76.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+.+  +.+.+++++++..+ |.                                  
T Consensus       163 llltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~-p~----------------------------------  205 (267)
T 3hp0_A          163 MTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLN-KK----------------------------------  205 (267)
T ss_dssp             HHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCC-HH----------------------------------
Confidence            578999999999999999999998644  34778898888862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~  134 (496)
                       |...+|++++... ..+.++++.|.+.+..++.|+|++|++++|++||+++..
T Consensus       206 -a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~  257 (267)
T 3hp0_A          206 -GIAHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWE  257 (267)
T ss_dssp             -HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC---
T ss_pred             -HHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Confidence             3347888888754 446778889999999999999999999999999987753

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=99.11  E-value=1.7e-11  Score=118.27  Aligned_cols=96  Identities=21%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  200 (256)
T 3pe8_A          156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNN-QK----------------------------------  200 (256)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL---LRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l---~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|...|...   ..+++.++++.+|++|+++.
T Consensus       201 -a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~  254 (256)
T 3pe8_A          201 -AVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQ  254 (256)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCcc
Confidence             3347889999888888999999999997655   56777799999999998754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.10  E-value=7.8e-10  Score=110.65  Aligned_cols=163  Identities=13%  Similarity=0.087  Sum_probs=104.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc--Cc-c
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL--DY-E  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~  222 (496)
                      |||+|||+|.||+.+|..|+++|++|++||+  +++.++...           +.|....... .. .++..++  +. +
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~g~-~~-~~~~~~~~~~~~~   67 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-----------AGREHPRLGV-KL-NGVEIFWPEQLEK   67 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-----------TTCCBTTTTB-CC-CSEEEECGGGHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-----------HhCcCcccCc-cc-cceEEecHHhHHH
Confidence            4899999999999999999999999999999  888766532           1221000000 00 2234444  54 3


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc------cHHHHHhhhcC--CCeeeeccccCcCC----
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYS--KDRIVGAHFFSPAH----  290 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~------~~~~la~~~~~--~~r~ig~hf~~P~~----  290 (496)
                      .++++|+||.|+|.+  ...+++.++.+ ++++++|++.+.++      ....+.+.+..  +....+.....|..    
T Consensus        68 ~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~  144 (335)
T 1txg_A           68 CLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV  144 (335)
T ss_dssp             HHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred             HHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence            478999999999976  45678888988 88888887776555      33455555432  11000111123322    


Q ss_pred             --CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc
Q 010966          291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (496)
Q Consensus       291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~  328 (496)
                        ..+...++.+  .+++..+.+.++++..|..+.+..|.
T Consensus       145 ~~g~~~~~~~~~--~~~~~~~~~~~ll~~~g~~~~~~~di  182 (335)
T 1txg_A          145 AKRMPTTVVFSS--PSESSANKMKEIFETEYFGVEVTTDI  182 (335)
T ss_dssp             HTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred             HccCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCch
Confidence              1222223333  36788999999999999887777763

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=99.09  E-value=4.8e-11  Score=115.10  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.                                  
T Consensus       159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  203 (254)
T 3isa_A          159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALD-PA----------------------------------  203 (254)
T ss_dssp             HHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~  134 (496)
                       +...+|+++.       .+.++.|...+..++.|+++++++.+|++||++...
T Consensus       204 -a~~~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~  249 (254)
T 3isa_A          204 -TRATLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGH  249 (254)
T ss_dssp             -HHHHHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC------
T ss_pred             -HHHHHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Confidence             2235666652       234567888899999999999999999999987653

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=99.08  E-value=5.8e-11  Score=114.91  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=76.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|++    ++++.++|++++..+ |.                                  
T Consensus       171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~-p~----------------------------------  211 (264)
T 3he2_A          171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLA-PL----------------------------------  211 (264)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCC-HH----------------------------------
Confidence            578999999999999999999986    467899999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++..  .+++++++.|.+.+..++.|+|++|++.+|++||++.
T Consensus       212 -a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~  260 (264)
T 3he2_A          212 -AIQHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPK  260 (264)
T ss_dssp             -HHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence             334788888875  3567788899999999999999999999999999764

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=99.08  E-value=1.4e-10  Score=117.47  Aligned_cols=134  Identities=15%  Similarity=0.103  Sum_probs=84.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC----------------------CCcchhhcccC-CCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR----------------------RPWVATLYKTD-KIE   57 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~----------------------~p~~~~~~~~~-~~~   57 (496)
                      |+|||++|+|+||+++||||+|||++++.+.+..+++ +...+                      ........... -+.
T Consensus       165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~  243 (363)
T 3bpt_A          165 LALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFS  243 (363)
T ss_dssp             HHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTT
T ss_pred             HHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhC
Confidence            5799999999999999999999999998775544432 11100                      00000000000 000


Q ss_pred             CchhHHHHHH--------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-h
Q 010966           58 PLGEAREIFK--------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-A  127 (496)
Q Consensus        58 ~~~~~~~~~~--------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~-~  127 (496)
                      .+ .+...++        ++++.+++-....| +...+|++++.+...+++++++.|...+..++.|+|++|++++|+ +
T Consensus       244 ~~-~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~e  322 (363)
T 3bpt_A          244 AN-TVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLID  322 (363)
T ss_dssp             SS-SHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTS
T ss_pred             CC-CHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeC
Confidence            00 0000011        11122223334434 678899999999888999999999999999999999999999999 6


Q ss_pred             hcCCCCCCC
Q 010966          128 QRGTSKVPG  136 (496)
Q Consensus       128 kr~~~~~~~  136 (496)
                      |++.+++.+
T Consensus       323 K~r~P~~~~  331 (363)
T 3bpt_A          323 KDQSPKWKP  331 (363)
T ss_dssp             CCCCCCCSS
T ss_pred             CCCCCCCCC
Confidence            734444543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.08  E-value=2.8e-10  Score=114.33  Aligned_cols=169  Identities=14%  Similarity=0.149  Sum_probs=107.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++||+|||+|.||+.+|..|+++|++|++||++ +.++...           +.|......-.....++..+++.+++.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            479999999999999999999999999999995 4444321           2232100000001112344566666789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-------------------H-HHHHhhhcCCCeeeec-cc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-------------------L-NLIGERTYSKDRIVGA-HF  285 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-------------------~-~~la~~~~~~~r~ig~-hf  285 (496)
                      +|+||.|||.. . ..++++++.+.++++++|++.+.+++                   . +.+.+.++. .++++. -+
T Consensus        71 ~D~Vilavk~~-~-~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVKAP-A-LESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCCHH-H-HHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEEC
T ss_pred             CCEEEEeCCch-h-HHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEE
Confidence            99999999863 3 44788888888899999988877753                   2 245555532 344432 22


Q ss_pred             c-----CcCC---CC-CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          286 F-----SPAH---VM-PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       286 ~-----~P~~---~~-~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      +     .|-.   .. ..+.+-..+..+.+..+.+.+++...|.......|..+
T Consensus       148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  201 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR  201 (335)
T ss_dssp             CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred             EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence            1     2321   11 11222222234457788899999999988777777555

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=99.06  E-value=6.1e-11  Score=113.59  Aligned_cols=90  Identities=19%  Similarity=0.199  Sum_probs=79.9

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++++.+++++++..+ |.                                  
T Consensus       154 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  198 (243)
T 2q35_A          154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSP-RL----------------------------------  198 (243)
T ss_dssp             HHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~  126 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+++++++++||
T Consensus       199 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          199 -SLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             -HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence             234788888887777889999999999999999999999999886

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=99.06  E-value=4.6e-10  Score=111.21  Aligned_cols=118  Identities=17%  Similarity=0.318  Sum_probs=82.6

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ||+|||+|.||.+++..++.+|+ +|+++|+++++++.....+.+..   ...+         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~---~~~~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAA---AELG---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHH---HHHT---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhh---hhcC---------CCeEEEECCCHHHhCCC
Confidence            69999999999999999998898 79999999887764332222111   0000         12356666788999999


Q ss_pred             CEEEEe--------------ccCChHHHHHHHHHHHhhCCCCe--eEeccCCcccHHHHHhhh----cC-CCeeeec
Q 010966          228 DMVIEA--------------IIENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERT----YS-KDRIVGA  283 (496)
Q Consensus       228 DlVIea--------------v~e~~~~k~~v~~~l~~~~~~~~--il~sntS~~~~~~la~~~----~~-~~r~ig~  283 (496)
                      |+||++              +..+..+++++.+++.+++ |++  |++||    |+..+...+    .. |.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN----Pv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN----PVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC----chHHHHHHHHHhcCCChhhEEEe
Confidence            999999              4556678899999999997 555  34455    444443332    22 4677776

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.63  E-value=1.6e-11  Score=114.12  Aligned_cols=149  Identities=16%  Similarity=0.238  Sum_probs=102.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      .++|+|||+|.||..+|..|.+.|++|++||++++ .+...           ..|             +...+..+.+++
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~   73 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASR   73 (201)
Confidence            36899999999999999999999999999999876 32211           111             112222345788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--------HHHHhhhcCCCeeeeccccCcCCCCC-eE--
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLIGERTYSKDRIVGAHFFSPAHVMP-LL--  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--------~~la~~~~~~~r~ig~hf~~P~~~~~-lv--  295 (496)
                      +|+||.|+|.. .+ ..++ ++.. ..++++|++.+++++.        +.+.+.++. .+++...++.|+.... ..  
T Consensus        74 aDvVilav~~~-~~-~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~  148 (201)
T 2yjz_A           74 SDVIVLAVHRE-HY-DFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLD  148 (201)
Confidence            99999999865 33 3444 4443 3467888888777763        445544432 4677776666665432 11  


Q ss_pred             ----EEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          296 ----EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       296 ----eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                          .++.+.  +++..+.+.++++.+|+.++.+++
T Consensus       149 g~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          149 ASRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence                344443  578899999999999999998875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.04  E-value=5.1e-09  Score=103.99  Aligned_cols=168  Identities=13%  Similarity=0.067  Sum_probs=108.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.||+.+|..|+++|++|++|++++  .+...           +.|...... -...+..+..+++.+.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            689999999999999999999999999999986  23221           223110000 0000012334456666789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHHHhhhcCCCeeeeccc------cCcCC---CCC-eE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHF------FSPAH---VMP-LL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~la~~~~~~~r~ig~hf------~~P~~---~~~-lv  295 (496)
                      +|+||.||+...  -.++++++.+++.++++|+|...++. .+.+.+.++. .++++...      ..|-+   ..+ .+
T Consensus        70 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLKTFA--NSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCCGGG--GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecCCCC--cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            999999998653  34788999999999999999999996 4566666643 34444321      12221   111 22


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      .+-..+..+.+..+.+.++|...|.......|.-+.
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~  182 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRA  182 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHH
Confidence            233334445677888999999999877766664433

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=99.03  E-value=1e-09  Score=108.96  Aligned_cols=101  Identities=19%  Similarity=0.284  Sum_probs=76.5

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ++.+||+|||+|.||.++|..++.+|+  +|+++|++++.++.....+.+..    ..         ....++..+++++
T Consensus        19 ~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~----~~---------~~~~~i~~t~d~~   85 (330)
T 3ldh_A           19 RSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGS----LF---------LHTAKIVSGKDYS   85 (330)
T ss_dssp             CCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHG----GG---------SCCSEEEEESSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhh----hc---------ccCCeEEEcCCHH
Confidence            356899999999999999999999998  99999999988765443333221    00         0124567778899


Q ss_pred             cccCCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          223 SFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       223 ~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++++||+||.+.              .++..+++++..++.+++ |++++.
T Consensus        86 ~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~il  135 (330)
T 3ldh_A           86 VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKE  135 (330)
T ss_dssp             SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEE
Confidence            999999999773              456678888999999995 555443

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=99.01  E-value=2.5e-10  Score=117.12  Aligned_cols=134  Identities=10%  Similarity=0.013  Sum_probs=85.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHH---H----------------HHHHHHhhhccC---CCcchhhc---ccCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVS---T----------------ARQWALDILEHR---RPWVATLY---KTDK   55 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~---~----------------A~~~a~~l~~~~---~p~~~~~~---~~~~   55 (496)
                      |+|||++|+|+||+++||||+|||++++.+   +                +.++++++....   .|......   ....
T Consensus       205 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~  284 (407)
T 3ju1_A          205 LGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDR  284 (407)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHH
T ss_pred             HHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHH
Confidence            579999999999999999999999999887   3                434443332110   01000000   0000


Q ss_pred             -CCCchhHHHHHH----------HHHHHHHhhCC-CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 010966           56 -IEPLGEAREIFK----------FARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH  123 (496)
Q Consensus        56 -~~~~~~~~~~~~----------~~~~~~~~~~~-~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~  123 (496)
                       +.  ..+...+.          +++...++-.. ...+...+|++++.+...+++++++.|...+..++.++|++|+++
T Consensus       285 ~f~--~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvr  362 (407)
T 3ju1_A          285 LMA--GSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVR  362 (407)
T ss_dssp             HTC--SCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred             Hhc--CCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence             00  00000100          11111111111 334778899999999999999999999999999999999999999


Q ss_pred             HHH-hhcCCCCCCC
Q 010966          124 IFF-AQRGTSKVPG  136 (496)
Q Consensus       124 aF~-~kr~~~~~~~  136 (496)
                      +|+ +|.+.+++.+
T Consensus       363 AflidKdr~P~w~~  376 (407)
T 3ju1_A          363 ALLIDKDKQPKWQF  376 (407)
T ss_dssp             HHTTSCCCCCCCSS
T ss_pred             HHHhcCCcCCCCCC
Confidence            998 7744455544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.00  E-value=2.2e-09  Score=106.42  Aligned_cols=121  Identities=20%  Similarity=0.305  Sum_probs=80.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (496)
                      |+||+|||+|.||.++|..|+.+|  ++|+++|++++.++.....+.+..    .   .       ....+.. ++++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~----~---~-------~~~~~~~~~~d~~~   66 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM----A---N-------LEAHGNIVINDWAA   66 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----G---G-------SSSCCEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhh----h---h-------cCCCeEEEeCCHHH
Confidence            369999999999999999999999  799999999987765433221110    0   0       0011222 356788


Q ss_pred             ccCCCEEEEeccCCh------------------HHHHHHHHHHHhhCCCCeeE--eccCCcccHHHHHhhh--cCCCeee
Q 010966          224 FKDVDMVIEAIIENV------------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERT--YSKDRIV  281 (496)
Q Consensus       224 ~~~aDlVIeav~e~~------------------~~k~~v~~~l~~~~~~~~il--~sntS~~~~~~la~~~--~~~~r~i  281 (496)
                      +++||+||.+++...                  .+++++++++.++++ ++++  +||.... ++.+....  -.+.|++
T Consensus        67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~-~~~~~~~~~~~~~~rvi  144 (309)
T 1hyh_A           67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDV-ITALFQHVTGFPAHKVI  144 (309)
T ss_dssp             GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHH-HHHHHHHHHCCCGGGEE
T ss_pred             hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHH-HHHHHHHhcCCCHHHEe
Confidence            999999999998643                  246788888888775 5544  3443332 23333332  2356777


Q ss_pred             ec
Q 010966          282 GA  283 (496)
Q Consensus       282 g~  283 (496)
                      |+
T Consensus       145 g~  146 (309)
T 1hyh_A          145 GT  146 (309)
T ss_dssp             EC
T ss_pred             ec
Confidence            76

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.99  E-value=3.3e-09  Score=105.12  Aligned_cols=102  Identities=23%  Similarity=0.305  Sum_probs=71.3

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +..+||+|||+|.||.++|..++.+|+ +|+++|++  ++.++.....+.+..            .......+++.++++
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~d~   73 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTSDY   73 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEESCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcCCH
Confidence            345799999999999999999999999 99999999  444443222221110            111123467777889


Q ss_pred             ccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          222 ESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       222 ~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      +++++||+||+++.  .            +..+.+++...+.++++ ++++.
T Consensus        74 ~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vl  124 (315)
T 3tl2_A           74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIV  124 (315)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            99999999999972  1            33456677778888864 55443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.95  E-value=3.8e-09  Score=105.09  Aligned_cols=126  Identities=21%  Similarity=0.299  Sum_probs=82.4

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      .++||+|||+|.||.++|..++.+|+ +|+++|++++.++.....+.+... ..  +         ...++..+++++++
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~--~---------~~~~v~~t~d~~a~   73 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VD--G---------FDAKFTGANDYAAI   73 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HH--T---------CCCCEEEESSGGGG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hc--C---------CCCEEEEeCCHHHH
Confidence            45799999999999999999999999 999999999876643333222110 00  0         11346667788999


Q ss_pred             cCCCEEEEecc--C------------ChHHHHHHHHHHHhhCCCCeeEe--ccCCcccHHHHHhhhcC-CCeeeecc
Q 010966          225 KDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGAH  284 (496)
Q Consensus       225 ~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~--sntS~~~~~~la~~~~~-~~r~ig~h  284 (496)
                      ++||+||.++.  .            +..+.+++...+.+++ |++++.  ||....-..-+...... +.|++|+.
T Consensus        74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~  149 (324)
T 3gvi_A           74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA  149 (324)
T ss_dssp             TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence            99999999863  1            3345566777788887 555543  44332222222222333 36777764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.95  E-value=3.5e-09  Score=105.58  Aligned_cols=167  Identities=14%  Similarity=0.087  Sum_probs=107.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCH-HHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQ-EKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.||+.+|..|+++|++|++|++++.  +...           +.|. +.. ..-...+..+..+++.+++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~-----------~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVK-----------AKGIRIRSATLGDYTFRPAAVVRSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHH-----------HHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHH-----------hCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence            6999999999999999999999999999999862  2221           1121 000 00000001233445665554


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHHHhhhcCCCeeeec-ccc-----CcCCC---CC-
Q 010966          226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGA-HFF-----SPAHV---MP-  293 (496)
Q Consensus       226 -~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~la~~~~~~~r~ig~-hf~-----~P~~~---~~-  293 (496)
                       ++|+||.|||...  -.++++++.++++++++|++...++. .+.+.+.++.. ++++. -++     .|-..   .+ 
T Consensus        70 ~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~  146 (320)
T 3i83_A           70 TKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYG  146 (320)
T ss_dssp             SCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCC
Confidence             8999999998764  23678889999999998888888886 46677666543 44432 222     22111   11 


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G  330 (496)
                      .+.+-..+..+.+..+.+.++|...|.......|.-+
T Consensus       147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~  183 (320)
T 3i83_A          147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITT  183 (320)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHH
T ss_pred             EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHH
Confidence            1222232344567788899999999988777766433

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=98.94  E-value=4.9e-10  Score=109.22  Aligned_cols=80  Identities=24%  Similarity=0.373  Sum_probs=72.7

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|+++++++|.++|++++..+ |.                                  
T Consensus       179 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  223 (277)
T 4di1_A          179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECP-PR----------------------------------  223 (277)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE  116 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~  116 (496)
                       |...+|++++.....+++++++.|...|..++.|+
T Consensus       224 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~  258 (277)
T 4di1_A          224 -ALAAAKAVINDVFELEATERAAAERRRYVELFAAG  258 (277)
T ss_dssp             -HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc
Confidence             34579999999999999999999999999999998

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.94  E-value=3.1e-09  Score=105.64  Aligned_cols=126  Identities=20%  Similarity=0.343  Sum_probs=81.9

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      .++||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+...            ......+++.+++++++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~------------~~~~~~~v~~t~d~~a~   71 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP------------IEGVDFKVRGTNDYKDL   71 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh------------hcCCCcEEEEcCCHHHH
Confidence            35799999999999999999999998 999999999876543322221110            00011345556788999


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEe--ccCCcccHHHHHhhhcC-CCeeeecc
Q 010966          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGAH  284 (496)
Q Consensus       225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~--sntS~~~~~~la~~~~~-~~r~ig~h  284 (496)
                      ++||+||.+..              .+..+.+++...+.+++ |++++.  ||....-..-+...... |.|++|+.
T Consensus        72 ~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           72 ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             CCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec
Confidence            99999999862              13456667777888887 555443  44332222222223333 36777764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.90  E-value=9.5e-10  Score=110.82  Aligned_cols=117  Identities=14%  Similarity=0.021  Sum_probs=84.2

Q ss_pred             eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      ++|+|||+|.||..+|..+. ..|++|++||++++..+...           +.|             +...++++ .++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-----------ALG-------------AERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-----------hcC-------------cEEeCCHHHHhc
Confidence            58999999999999999999 99999999999876443321           111             12233453 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCC-CeeeeccccCc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFFSP  288 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~-~r~ig~hf~~P  288 (496)
                      +||+|+.++|...+.+.-+.+++.+.++++++|++.+++  .....+.+.+... -...|+++|.|
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999988766655545666788999988754444  4456788877542 23367898874

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.90  E-value=7.4e-09  Score=102.98  Aligned_cols=121  Identities=18%  Similarity=0.256  Sum_probs=79.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +++||+|||+|.||.++|..++..|.  +|+++|++++.++.....+.+.      .....      ...+++ ++++++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~------~~~~~------~~~~i~-~~~~~a   71 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG------KVFAP------KPVDIW-HGDYDD   71 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------TTSSS------SCCEEE-ECCGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH------hhhcC------CCeEEE-cCcHHH
Confidence            45799999999999999999998886  8999999987555322222110      00000      011233 346788


Q ss_pred             ccCCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCe-eEeccCCcccHHHHHhhh----cC-CCeeeec
Q 010966          224 FKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERT----YS-KDRIVGA  283 (496)
Q Consensus       224 ~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~~~~~~la~~~----~~-~~r~ig~  283 (496)
                      +++||+||+++              .++..+++++.+.+.+++++.. +++||    |+..+...+    .. |.|++|+
T Consensus        72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN----Pv~~~~~~~~~~s~~p~~rviG~  147 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN----PVDILTYATWKFSGLPHERVIGS  147 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS----SHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC----chHHHHHHHHHHhCCCHHHEEec
Confidence            99999999994              3445789999999999975433 33444    444333322    22 4577776

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.89  E-value=9.5e-10  Score=110.11  Aligned_cols=117  Identities=16%  Similarity=0.080  Sum_probs=82.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|++||++++..+...           +.|             +... +++ .+++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~~  210 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAAQ  210 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence            6899999999999999999999999999999875433211           111             1222 443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeeccccCcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFFSPA  289 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~~P~  289 (496)
                      ||+||.++|...+.+.-+.+++.+.+++++++++.+++  .....+.+.+.. .-...++++|+|.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            99999999987665444435666778999988754444  345677777643 2344678888654

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=98.89  E-value=6.3e-10  Score=114.29  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=71.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||++++++++.+++.+++..                                      
T Consensus       347 llLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~~--------------------------------------  388 (440)
T 2np9_A          347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGD--------------------------------------  388 (440)
T ss_dssp             HHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCSH--------------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCHH--------------------------------------
Confidence            579999999999999999999999999999999998876431                                      


Q ss_pred             CcHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPR---AGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~---~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       ++..+|++++.... +++   +.+..|...+..++.|+|+++++.+|++||+
T Consensus       389 -Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          389 -AVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             -HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred             -HHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence             23467888877644 443   4566777888899999999999999999985

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.89  E-value=1.4e-08  Score=101.09  Aligned_cols=123  Identities=24%  Similarity=0.396  Sum_probs=81.9

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .++||+|||+|.||..+|..|+.+|+  +|+++|++++.++.....+.        .+. +..      ..++..+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~--------~~~~~~~------~~~v~~~~~~~   71 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQ--------HGSSFYP------TVSIDGSDDPE   71 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHH--------HTGGGST------TCEEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHH--------hhhhhcC------CeEEEeCCCHH
Confidence            35799999999999999999999999  99999999877652111111        111 000      12344455678


Q ss_pred             cccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhh-c-CCCeeeec
Q 010966          223 SFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERT-Y-SKDRIVGA  283 (496)
Q Consensus       223 ~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~-~-~~~r~ig~  283 (496)
                      ++++||+||.++..              +..++++++.++.++ .++++|++.+.++... .+.... . .+.+++|.
T Consensus        72 ~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~  148 (319)
T 1lld_A           72 ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  148 (319)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence            89999999999931              235667888888887 6777776666555543 333321 2 23567764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.89  E-value=1e-08  Score=101.72  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.||.++|..|+.+  |++|+++|++++.++.....+.+...            ......++..++++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence            4899999999999999999985  79999999998877643211111100            001123567777888899


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHhhCCCCe
Q 010966          226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHC  256 (496)
Q Consensus       226 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~  256 (496)
                      +||+||++++..              ..+.+++.+.+.+++++..
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~  113 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI  113 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            999999999532              1455677778888864444

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=98.87  E-value=1.4e-09  Score=105.10  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=68.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       181 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  225 (263)
T 2j5g_A          181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQP-TL----------------------------------  225 (263)
T ss_dssp             HHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|++++.....++++++..|.           ..|++++|++||.
T Consensus       226 -a~~~~K~~l~~~~~~~l~~~l~~e~-----------~~eg~~af~~~~~  263 (263)
T 2j5g_A          226 -NLRYTRVALTQRLKRLVNEGIGYGL-----------ALEGITATDLRNT  263 (263)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTC-
T ss_pred             -HHHHHHHHHHhhhhccHHHHHHHHH-----------HHhhHHHHHhccC
Confidence             2347888888776666666666553           4599999999873

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=98.87  E-value=1.7e-09  Score=106.92  Aligned_cols=93  Identities=16%  Similarity=0.056  Sum_probs=80.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++|+|+||+++||||+|||+++++++|.++|++++.  +|.                                  
T Consensus       204 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~--~p~----------------------------------  247 (305)
T 3m6n_A          204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR--TPH----------------------------------  247 (305)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT--CHH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh--ChH----------------------------------
Confidence            57899999999999999999999999999999999999975  232                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|++++.....+++++++.|...+..++.|++....+..++.+..
T Consensus       248 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q  296 (305)
T 3m6n_A          248 -AWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQ  296 (305)
T ss_dssp             -HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence             3347899999999999999999999999999999988777665555444

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.86  E-value=1.2e-08  Score=102.89  Aligned_cols=112  Identities=18%  Similarity=0.171  Sum_probs=76.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhhhcce-ecccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKTISLL-TGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~~~~i-~~~~~~~~  223 (496)
                      ++||+|||+|.||..+|..|+.+|++|++||++++.++...+           .+.+.  ..... ...++ ..++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~   71 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD-----------RGAIIAEGPGLA-GTAHPDLLTSDIGL   71 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HTSEEEESSSCC-EEECCSEEESCHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHh-----------cCCeEEeccccc-cccccceecCCHHH
Confidence            469999999999999999999999999999999988765432           11000  00000 00112 23455543


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC-cccHHHHHh
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDLNLIGE  272 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS-~~~~~~la~  272 (496)
                       ++++|+||.|+|....  .+++.++.+.++++++|++..+ ++...++.+
T Consensus        72 ~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~  120 (359)
T 1bg6_A           72 AVKDADVILIVVPAIHH--ASIAANIASYISEGQLIILNPGATGGALEFRK  120 (359)
T ss_dssp             HHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESSCCSSHHHHHHH
T ss_pred             HHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcCCCchHHHHHHH
Confidence             7899999999997753  6788899999998887665533 433333433

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.82  E-value=4.7e-09  Score=107.99  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=77.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh-CCCcEEEEe---CCHHHHHHHHHHHHHHHHHHHHcCC-CC---H-HHHHhhhccee-
Q 010966          147 VKKVAILGGGLMGSGIATALIL-SNYPVILKE---VNEKFLEAGIGRVRANLQSRVKKGK-MT---Q-EKFEKTISLLT-  216 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~-~G~~V~l~d---~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~-~~~~~~~~~i~-  216 (496)
                      ++||+|||+|.||..+|..|+. +|++|++||   ++++.++...+          +.|. +.   . .+......++. 
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~   71 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQTEVKSRPKV   71 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCEEEEEECCSE
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCccceeeccceE
Confidence            4699999999999999999988 599999999   87776655321          1110 00   0 00000112333 


Q ss_pred             cccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966          217 GVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (496)
Q Consensus       217 ~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~  268 (496)
                      .+++.+ .++++|+||+|||...  ..++++++.++++++++|++++++..++
T Consensus        72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G~~  122 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAGFE  122 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTTHH
T ss_pred             EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCccHH
Confidence            455664 4789999999999764  6789999999999999999876655543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.81  E-value=1.6e-09  Score=108.54  Aligned_cols=116  Identities=17%  Similarity=0.082  Sum_probs=81.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      -++|+|||+|.||..+|..+...|++|++||++++. +...           +.|             +.. .++ +.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence            368999999999999999999999999999999865 3211           112             112 244 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSP  288 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P  288 (496)
                      +||+|+.++|...+.+.-+.+++.+.++++++|++.+.+..  -..+.+.+.. +-...|+++|+|
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~  269 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE  269 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence            99999999998876554343566677899998865444433  3367666643 223467898873

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.80  E-value=1.5e-09  Score=108.59  Aligned_cols=111  Identities=15%  Similarity=0.070  Sum_probs=80.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|++||++++...                |             .....+++ .+++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999875311                1             11234454 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFS  287 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~  287 (496)
                      ||+|+.++|...+.+.-+-+++.+.++++++|++.+++..  ...+.+.+.. ..+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            9999999998765544333455566789998875554433  3577777743 34567888886

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.77  E-value=2.8e-09  Score=106.76  Aligned_cols=113  Identities=21%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||+|.||.++|..+...|++|++||++++. +...           +.|             +... +++ .+++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-----------ELK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------ceec-CHHHHHhh
Confidence            58999999999999999999999999999999865 2211           111             1122 443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCC-CeeeeccccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSK-DRIVGAHFFS  287 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~-~r~ig~hf~~  287 (496)
                      ||+|+.++|...+.+.-+-+++.+.++++ ++++.+.+.  .-..+.+.+... ....|+++|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999988665554444556678888 765433332  234566666432 3557899987

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.77  E-value=4.4e-08  Score=102.09  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=56.1

Q ss_pred             ceEEEEEeCChhh--HHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGLMG--SGIATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG--~~iA~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      .+||+|||+|.||  .++|..++..    |++|++||++++.++.......    .......        ...+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~----~~l~~~~--------~~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAK----KYVEEVG--------ADLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHH----HHHHHTT--------CCCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHH----HHhccCC--------CCcEEEEECC
Confidence            3699999999975  5557778754    8999999999998887543322    2221111        1246788888


Q ss_pred             c-ccccCCCEEEEecc
Q 010966          221 Y-ESFKDVDMVIEAII  235 (496)
Q Consensus       221 ~-~~~~~aDlVIeav~  235 (496)
                      + +++++||+||++++
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            7 67999999999995

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.75  E-value=3.6e-08  Score=96.70  Aligned_cols=102  Identities=17%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |||+|||+|.||.++|..++.+|+  +|++||++++.++.....+.+...   ..+         ...+++.++++++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~---~~~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---GID---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH---TTT---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhh---hcC---------CCCEEEEeCCHHHhC
Confidence            589999999999999999999998  999999999887632222221110   000         113566666788999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      +||+||.+..-              +..+.+++...+.+++ |++++...|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence            99999998732              1234445556677774 556554333

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=98.72  E-value=5.7e-09  Score=101.95  Aligned_cols=88  Identities=6%  Similarity=0.016  Sum_probs=65.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCc-----hHHHHHH-HHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHH
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPN-----QLVSTAR-QWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQAR   74 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~-----~l~~~A~-~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (496)
                      |+|||++++|+||+++||||+|||++     ++++++. ++|++++..+ |.                            
T Consensus       177 llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~-~~----------------------------  227 (280)
T 1pjh_A          177 CLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY-LP----------------------------  227 (280)
T ss_dssp             HHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC-HH----------------------------
T ss_pred             HHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCC-HH----------------------------
Confidence            57999999999999999999999985     7888885 8999999862 32                            


Q ss_pred             hhCCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCC
Q 010966           75 KQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPG  136 (496)
Q Consensus        75 ~~~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~  136 (496)
                             +...+|++++....    ..++        ...++|+++++.+|.+||++..+..
T Consensus       228 -------a~~~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e~~~~  270 (280)
T 1pjh_A          228 -------SCLGMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLKRFRQ  270 (280)
T ss_dssp             -------HHHHHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHHHHTC
T ss_pred             -------HHHHHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHHHHHH
Confidence                   23367788776442    2222        1247888899999988887644433

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.70  E-value=7.6e-08  Score=95.87  Aligned_cols=101  Identities=21%  Similarity=0.342  Sum_probs=70.8

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .+.+||+|||+|.||.++|..++.+|+  +|+++|++++.++.....+.+..    .   +      .....+..+++++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~----~---~------~~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS----L---F------LKTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG----G---G------CSCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh----h---c------cCCCeEEEcCCHH
Confidence            346799999999999999999999998  89999999887765443332210    0   0      0112455567899


Q ss_pred             cccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEe
Q 010966          223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       223 ~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++++||+||.+.-              .+..+.+++...+.+++ |++++.
T Consensus        84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vl  133 (331)
T 4aj2_A           84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLL  133 (331)
T ss_dssp             GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence            9999999998752              12345566667788885 455444

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=98.69  E-value=7.1e-09  Score=98.44  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       159 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  203 (232)
T 3ot6_A          159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKIN-MN----------------------------------  203 (232)
T ss_dssp             HHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF  109 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~  109 (496)
                       |...+|++++.....+++++++.|.+.|
T Consensus       204 -a~~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          204 -AHKKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence             3347899999988888999999998765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.68  E-value=7.3e-08  Score=95.39  Aligned_cols=100  Identities=18%  Similarity=0.282  Sum_probs=67.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |||+|||+|.||.++|..++.+|+  +|+++|++++.++.....+.+....  . +         ...++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~--~-~---------~~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI--H-G---------FDTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH--H-T---------CCCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc--c-C---------CCcEEEECCCHHHhC
Confidence            589999999999999999999987  9999999998765433222221100  0 0         012344456789999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEec
Q 010966          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      +||+||.+..-              +..+.+++...+.+++ |++++..
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~viv  116 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIV  116 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEE
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEe
Confidence            99999998732              1234445556677765 5555443

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=98.63  E-value=3.5e-08  Score=98.68  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=40.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~   42 (496)
                      |+|||++|+|+||+++||||+|||+++|+++|.++|++++..
T Consensus       218 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~  259 (333)
T 3njd_A          218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAM  259 (333)
T ss_dssp             HHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTS
T ss_pred             HHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcC
Confidence            579999999999999999999999999999999999999986

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.62  E-value=2.4e-07  Score=96.63  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=78.9

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +||+|||+|.+ |.++|..|+..     +.+|++||++++.++... .+...+..  ..+         ...+++.++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~-~~~~~~l~--~~~---------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA-GACDVFIR--EKA---------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHH-HHHHHHHH--HHC---------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHH-HHHHHHhc--cCC---------CCCEEEEECCH
Confidence            59999999998 66688888887     669999999999877643 32222110  111         12467777887


Q ss_pred             -ccccCCCEEEEeccCCh----------------------------------HHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          222 -ESFKDVDMVIEAIIENV----------------------------------SLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~----------------------------------~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                       +++++||+||.+++...                                  .+.+++..++.+++ |++++...|....
T Consensus        97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd  175 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  175 (472)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence             77999999999997521                                  24557777888887 5555543333332


Q ss_pred             H-HHHHhhhcCCCeeeec
Q 010966          267 L-NLIGERTYSKDRIVGA  283 (496)
Q Consensus       267 ~-~~la~~~~~~~r~ig~  283 (496)
                      + +........+.|++|+
T Consensus       176 i~T~~~~k~~p~~rViG~  193 (472)
T 1u8x_X          176 IVAEATRRLRPNSKILNI  193 (472)
T ss_dssp             HHHHHHHHHSTTCCEEEC
T ss_pred             HHHHHHHHhCCCCCEEEe
Confidence            2 2333232323477775

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.62  E-value=1e-07  Score=98.61  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             eEEEEEeCChh--hHHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLM--GSGIATALIL----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~m--G~~iA~~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +||+|||+|.|  |.+|+..++.    .| +|++||++++.++.... +.+         .+..     ...+++.|+|+
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~---------~l~~-----~~~~I~~TtD~   69 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGN---------HSGN-----GRWRYEAVSTL   69 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHT---------TSTT-----SCEEEEEESSH
T ss_pred             CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHH---------HHhc-----cCCeEEEECCH
Confidence            59999999997  5899998886    57 99999999998776422 111         1111     23568888898


Q ss_pred             -ccccCCCEEEEecc
Q 010966          222 -ESFKDVDMVIEAII  235 (496)
Q Consensus       222 -~~~~~aDlVIeav~  235 (496)
                       +++++||+||++++
T Consensus        70 ~eAl~dADfVI~air   84 (450)
T 3fef_A           70 KKALSAADIVIISIL   84 (450)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             HHHhcCCCEEEeccc
Confidence             56899999999995

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.61  E-value=3.3e-08  Score=105.05  Aligned_cols=149  Identities=10%  Similarity=0.054  Sum_probs=97.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||+++|..+...|++|++||++++. +.+.           +.|.             ... ++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g~-------------~~~-~l~e~~~~  196 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLGI-------------ELL-SLDDLLAR  196 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHTC-------------EEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcCc-------------EEc-CHHHHHhc
Confidence            68999999999999999999999999999998642 2111           1121             112 34 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCC------Ceeeecccc--CcCCCCCeEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSK------DRIVGAHFF--SPAHVMPLLE  296 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~------~r~ig~hf~--~P~~~~~lve  296 (496)
                      ||+|+.|+|...+.+.-+-+++.+.+++++++++.+.+-  .-..+.+.+...      -.|++.||.  +|....+-+.
T Consensus       197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi  276 (529)
T 1ygy_A          197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV  276 (529)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred             CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence            999999999775544333233666789999887655443  334566666421      124555553  2333356677


Q ss_pred             EEeCCC-CCHHHHHH-----HHHHHHHcCCce
Q 010966          297 IVRTNQ-TSPQVIVD-----LLDIGKKIKKTP  322 (496)
Q Consensus       297 iv~~~~-t~~e~~~~-----~~~l~~~lGk~~  322 (496)
                      ++|+.. ++++..+.     +..+...++..+
T Consensus       277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888877 77877664     556666665443

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=98.60  E-value=1e-08  Score=97.36  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||+++++++|.++|++++..+ |.                                  
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  203 (233)
T 3r6h_A          159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLN-QQ----------------------------------  203 (233)
T ss_dssp             HHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            4789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF  109 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~  109 (496)
                       |...+|++++.....+++++++.|...|
T Consensus       204 -a~~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          204 -AHNATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             -HHHHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             -HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence             3347888998888888999999998776

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.59  E-value=1e-08  Score=100.32  Aligned_cols=124  Identities=13%  Similarity=-0.000  Sum_probs=85.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+++|..+...|++|+.||++++..+.                             ....++++ .+++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence            68999999999999999999999999999998643211                             11233454 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeecccc-----CcCCCCCeEEEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF-----SPAHVMPLLEIV  298 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~-----~P~~~~~lveiv  298 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+++  +.-..+.+.+.. .-...++-.|     +|....+-+.+.
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT  253 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS  253 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence            99999999976665544446677788999988755433  345677776642 2334444444     344445666677


Q ss_pred             eC
Q 010966          299 RT  300 (496)
Q Consensus       299 ~~  300 (496)
                      |+
T Consensus       254 PH  255 (290)
T 3gvx_A          254 PH  255 (290)
T ss_dssp             CS
T ss_pred             cc
Confidence            76

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.59  E-value=2.1e-07  Score=92.54  Aligned_cols=100  Identities=23%  Similarity=0.274  Sum_probs=68.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh-ccee-cccCc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI-SLLT-GVLDY  221 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~i~-~~~~~  221 (496)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+..               ..+ ..++ .++++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~v~i~~~~~   68 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGK---------------AFAPQPVKTSYGTY   68 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTG---------------GGSSSCCEEEEECG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcc---------------ccccCCeEEEeCcH
Confidence            45799999999999999999999997  99999999987765433332210               011 1111 24568


Q ss_pred             ccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          222 ESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       222 ~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +++++||+||.++..              +..+.+++...+.++++ ++++...
T Consensus        69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvv  121 (326)
T 3pqe_A           69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVA  121 (326)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEEC
T ss_pred             HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEc
Confidence            899999999998731              11334455566777754 5555433

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.58  E-value=1.4e-08  Score=99.84  Aligned_cols=155  Identities=14%  Similarity=0.080  Sum_probs=98.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-cC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-KD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~  226 (496)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++..           ...|..        ...+. .+..+.+ .+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~--------~~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAP--------AQDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSC--------CEEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCee--------cccee-cCchHhcCCC
Confidence            689999999999999999999999999999996533210           001110        01121 2223444 78


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeecc-c-----cCcCCCC-CeEEEEe
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAH-F-----FSPAHVM-PLLEIVR  299 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~h-f-----~~P~~~~-~lveiv~  299 (496)
                      +|+||.||+..  ...++++++.++++++++|+|...++...+.   ++. .++++.. +     ..|-+.. ....+..
T Consensus        63 ~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVKTH--QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSCGG--GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCCcc--CHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            99999999865  3557888899999999999888888876554   322 3444321 1     1221110 0011222


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (496)
Q Consensus       300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~  331 (496)
                      +   +.+..+.+.++|...|.......|..+.
T Consensus       137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~  165 (294)
T 3g17_A          137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQA  165 (294)
T ss_dssp             E---CSHHHHHHHHHTTTSSCEEEEESSHHHH
T ss_pred             C---ccHHHHHHHHHHHhCCCceEEChHHHHH
Confidence            2   3456777888888888777776664443

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.57  E-value=3.3e-07  Score=90.62  Aligned_cols=116  Identities=17%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +||+|||+|.||+.+|..|+ +|++|++|+++++.++...+           .|......-......+.  .+.+...++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~~~~~~~~~~~--~~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYKGGEEFRADCS--ADTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECCE--EESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEecCCCeeccccc--ccccccCCC
Confidence            69999999999999999999 99999999999987665421           22110000000000111  112346789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCCCeeee
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG  282 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~~r~ig  282 (496)
                      |+||.||+..  .-.+++.++.+. .+++ |+|...++... .+.+.++. .++++
T Consensus        69 D~vilavK~~--~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl~  119 (307)
T 3ego_A           69 DLLVVTVKQH--QLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIYV  119 (307)
T ss_dssp             SEEEECCCGG--GHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEEE
T ss_pred             CEEEEEeCHH--HHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEEE
Confidence            9999999754  245667777664 6777 77888889876 44444443 34443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.56  E-value=3.7e-07  Score=89.29  Aligned_cols=104  Identities=16%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |||+|||+|.+|.++|..++.++.  ++.|+|++++.++.-...+.+...            .-.....+..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~------------~~~~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA------------GIDKYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG------------GGTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc------------cCCCCCeEecCCCHHHhC
Confidence            699999999999999999998886  899999998766543333322110            000113456677899999


Q ss_pred             CCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       226 ~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +||+||.+.  |            .+..+.+++..++.++++ ++++...|..
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvsNP  120 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNP  120 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSS
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCc
Confidence            999999875  2            133455566667777765 4444433333

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.54  E-value=1.9e-07  Score=92.91  Aligned_cols=138  Identities=13%  Similarity=0.031  Sum_probs=87.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|+|||+|.||.++|..+...|++|+.||+ +++.. .+.           +.|             +....++ +.++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell~  201 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLLS  201 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHHh
Confidence            6899999999999999999999999999999 77542 111           112             1122244 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCC-Ceeeecccc--Cc-----CCCCCeE
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFF--SP-----AHVMPLL  295 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~-~r~ig~hf~--~P-----~~~~~lv  295 (496)
                      +||+|+.++|...+.+.-+-++..+.+++++++++.+++  +....+.+.+... -.-.++.+|  .|     ....+-+
T Consensus       202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nv  281 (320)
T 1gdh_A          202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT  281 (320)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTE
T ss_pred             hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCE
Confidence            999999999976654332224455678999988766555  4455677766422 122334444  23     2234556


Q ss_pred             EEEeCCCC-CHHHHHH
Q 010966          296 EIVRTNQT-SPQVIVD  310 (496)
Q Consensus       296 eiv~~~~t-~~e~~~~  310 (496)
                      .++|+... +.+....
T Consensus       282 iltPH~~~~t~~~~~~  297 (320)
T 1gdh_A          282 FLFPHIGSAATQARED  297 (320)
T ss_dssp             EECSSCTTCBHHHHHH
T ss_pred             EECCcCCcCcHHHHHH
Confidence            66666433 3444333

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.49  E-value=6.6e-07  Score=88.86  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=67.4

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee-cccCcc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~  222 (496)
                      ..+||+|||+|.||.++|..++..|+  +|+++|++++.++.....+.+..               ..+..++ .+.+++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL---------------PFTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh---------------hhcCCcEEEECcHH
Confidence            34799999999999999999999998  89999999987765433322110               1112222 245688


Q ss_pred             cccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          223 SFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       223 ~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ++++||+||.+..-              +..+.+++...+.++++ ++++...
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvv  124 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVA  124 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEEC
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEc
Confidence            99999999988621              22344566667777765 5544433

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=98.48  E-value=4.7e-08  Score=94.16  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  216 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKP-LL----------------------------------  216 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~  130 (496)
                       +...+|++++.....+++++++.|.+.           +++.+|-.+.+
T Consensus       217 -a~~~~K~~l~~~~~~~l~~~l~~~~~~-----------eg~~a~~~~~~  254 (257)
T 1szo_A          217 -ARRYARKVLTRQLRRVMEADLSLGLAH-----------EALAAIDLGME  254 (257)
T ss_dssp             -HHHHHHHHHSHHHHHHHHHHHHHHHHH-----------HHHHHHHHC--
T ss_pred             -HHHHHHHHHHhhhhccHHHHHHHHHHH-----------hhhhhhhcccc
Confidence             234688888877766777777665433           66788876543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.48  E-value=4.8e-07  Score=90.49  Aligned_cols=100  Identities=24%  Similarity=0.312  Sum_probs=71.3

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (496)
                      .+||+|||+ |.+|..+|..++..|.  +|+++|+++++++.....+.+.        .+.       ..++..++++ +
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~~~   72 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDIKE   72 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCHHH
Confidence            579999998 9999999999999985  8999999998766543333221        111       1345666675 6


Q ss_pred             cccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCe--eEecc
Q 010966          223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC--ILASN  261 (496)
Q Consensus       223 ~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~--il~sn  261 (496)
                      ++++||+||.++-              .+..+.+++...+.+++++..  +++||
T Consensus        73 al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN  127 (343)
T 3fi9_A           73 ALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN  127 (343)
T ss_dssp             HHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence            7999999999851              234566677778888886654  34454

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.46  E-value=3.1e-08  Score=100.53  Aligned_cols=109  Identities=19%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--------cEEEEeCCHHHHHH-HHHHHHHHHHHHHHcC-CCCHHHHHhhhcceec
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--------PVILKEVNEKFLEA-GIGRVRANLQSRVKKG-KMTQEKFEKTISLLTG  217 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--------~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~  217 (496)
                      .||+|||+|.||+++|..|+++|+        +|.+|.++++.... ..+.|+..    .+.. .+..   -.+..+++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~----~~N~~YLpg---v~Lp~~i~~  107 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTR----HQNVKYLPG---ITLPDNLVA  107 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTT----CCBTTTBTT---CCCCSSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhc----CcCcccCCC---CcCCCCcEE
Confidence            499999999999999999999875        49999998753111 11111100    0000 0110   112356888


Q ss_pred             ccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          218 VLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       218 ~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      ++|++ .+++||+||.+||..  ..+.+++++.+++++++++++.+-++
T Consensus       108 t~dl~~al~~ad~ii~avPs~--~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          108 NPDLIDSVKDVDIIVFNIPHQ--FLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             ESCHHHHHTTCSEEEECSCGG--GHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             eCCHHHHHhcCCEEEEECChh--hhHHHHHHhccccCCCceeEEecccc
Confidence            88874 589999999999965  57889999999999999888776554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.45  E-value=2.4e-07  Score=93.00  Aligned_cols=104  Identities=12%  Similarity=0.124  Sum_probs=74.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||+++...+...           +.|             +....+++ .+++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-----------ETG-------------AKFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-----------HHC-------------CEECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-----------hCC-------------CeEcCCHHHHHhc
Confidence            5899999999999999999999999999999864332211           112             12233453 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence            99999999976655544446666778999988754433  34567777764

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.44  E-value=1.2e-06  Score=90.99  Aligned_cols=123  Identities=22%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~-----G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      +||+|||+|.+ |.+++..|+.+     +.+|++||+++  +.++... .+...+..  ..+         ...+++.++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~-~~~~~~~~--~~~---------~~~~i~~t~   75 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVG-ALAKRMVE--KAG---------VPIEIHLTL   75 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHH-HHHHHHHH--HTT---------CCCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHH-HHHHHHHh--hcC---------CCcEEEEeC
Confidence            69999999999 88888888874     56899999999  8877633 22222110  111         113577777


Q ss_pred             Cc-ccccCCCEEEEeccCCh----------------------------------HHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          220 DY-ESFKDVDMVIEAIIENV----------------------------------SLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       220 ~~-~~~~~aDlVIeav~e~~----------------------------------~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      |+ +++++||+||.+++...                                  .+.+++..++.+++ |++++...|..
T Consensus        76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNP  154 (450)
T 1s6y_A           76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP  154 (450)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred             CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            86 78999999999997421                                  24567777888887 45555433333


Q ss_pred             ccH-HHHHhhhcCCCeeeec
Q 010966          265 IDL-NLIGERTYSKDRIVGA  283 (496)
Q Consensus       265 ~~~-~~la~~~~~~~r~ig~  283 (496)
                      ..+ +..........|++|+
T Consensus       155 vdivT~a~~k~~p~~rViG~  174 (450)
T 1s6y_A          155 AGMVTEAVLRYTKQEKVVGL  174 (450)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEe
Confidence            322 3333333323377775

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.44  E-value=1.8e-07  Score=92.51  Aligned_cols=129  Identities=17%  Similarity=0.097  Sum_probs=82.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++++. +...           +.|             +.. .++ +.+++
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~~  196 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKF-VDLETLLKE  196 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEE-CCHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------ccc-cCHHHHHhh
Confidence            68999999999999999999999999999998765 2211           112             111 134 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcC-CCeeeeccccC--c------CCCCCeE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFFS--P------AHVMPLL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~-~~r~ig~hf~~--P------~~~~~lv  295 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-  .-..+.+.+.. .-.-.++.+|.  |      ....+-+
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  276 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV  276 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCE
Confidence            999999999776544322245556789999887655542  33466666632 22223333332  2      2234556


Q ss_pred             EEEeCCC
Q 010966          296 EIVRTNQ  302 (496)
Q Consensus       296 eiv~~~~  302 (496)
                      .++|+..
T Consensus       277 iltPh~~  283 (307)
T 1wwk_A          277 VLTPHIG  283 (307)
T ss_dssp             EECSSCT
T ss_pred             EECCccc
Confidence            6766654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.43  E-value=1.6e-07  Score=93.12  Aligned_cols=102  Identities=13%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|+.||++++... ..           +.|.             .. .++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g~-------------~~-~~l~ell~~  196 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KINA-------------KA-VSLEELLKN  196 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTTC-------------EE-CCHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcCc-------------ee-cCHHHHHhh
Confidence            6899999999999999999999999999999876531 11           1121             11 234 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.+++++++++.+++  +.-..+.+.+.
T Consensus       197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            99999999976654322224455678899988765554  33456777764

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.43  E-value=2.7e-07  Score=91.71  Aligned_cols=127  Identities=10%  Similarity=0.084  Sum_probs=85.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||++++..+.                 +         .......++ +.+++
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH-----------------F---------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTT-----------------C---------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHh-----------------H---------hhccccCCHHHHHhh
Confidence            68999999999999999999999999999998653211                 0         111122344 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCC-CeeeeccccC--c------CCCCCeE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFFS--P------AHVMPLL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~-~r~ig~hf~~--P------~~~~~lv  295 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+... -...++-.|.  |      .+..+-|
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  271 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV  271 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSE
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCE
Confidence            99999999977765554446667778999988754433  4456777777432 2233444442  3      2234556


Q ss_pred             EEEeC
Q 010966          296 EIVRT  300 (496)
Q Consensus       296 eiv~~  300 (496)
                      .+.|+
T Consensus       272 ilTPH  276 (324)
T 3evt_A          272 LITPH  276 (324)
T ss_dssp             EECCS
T ss_pred             EEcCc
Confidence            66665

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.42  E-value=4.7e-07  Score=91.01  Aligned_cols=103  Identities=14%  Similarity=0.108  Sum_probs=73.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||+++.. +..           .+.|             +....+++ .+++
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence            68999999999999999999999999999998642 111           1122             12233554 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~  266 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN  266 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHH
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHH
Confidence            99999999977665544445666778999988754433  33356666663

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.42  E-value=1.8e-06  Score=85.75  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=65.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCcccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~  224 (496)
                      +||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..               .....++. ..+++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ---------------AFTAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG---------------GGSCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH---------------HhcCCeEEEECCHHHh
Confidence            699999999999999999998887  89999999988775333222110               01112222 2467889


Q ss_pred             cCCCEEEEeccC--Ch------------HHHHHHHHHHHhhCCCCeeEe
Q 010966          225 KDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       225 ~~aDlVIeav~e--~~------------~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++||+||.+++-  ++            .+.+++...+.+++ |++++.
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~ii  118 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFL  118 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            999999998742  11            34555666777775 455443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.40  E-value=1.9e-06  Score=85.73  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=65.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (496)
                      -+||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..               .....++. ..++++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL---------------PFTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH---------------HhcCCeEEEECCHHH
Confidence            3699999999999999999998887  89999999987765333221110               01122222 246788


Q ss_pred             ccCCCEEEEeccC--Ch------------HHHHHHHHHHHhhCCCCeeEe
Q 010966          224 FKDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       224 ~~~aDlVIeav~e--~~------------~~k~~v~~~l~~~~~~~~il~  259 (496)
                      +++||+||.+++-  ++            .+.+++...+.+++ |++++.
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~ii  122 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFL  122 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEE
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence            9999999998742  22            34555666777886 455443

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=98.39  E-value=8.1e-08  Score=93.69  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=57.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       179 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  223 (279)
T 3t3w_A          179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMP-PF----------------------------------  223 (279)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVS-GPRAGLQKEAED  108 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~-~~~~~l~~E~~~  108 (496)
                       +...+|++++..... +++++++.|...
T Consensus       224 -a~~~~K~~l~~~~~~~~~~~~~~~~~~~  251 (279)
T 3t3w_A          224 -ALRQAKRAVNQTLDVQGFYAAIQSVFDI  251 (279)
T ss_dssp             -HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhhcccHHHHHHHHhhH
Confidence             234678888776643 566666655443

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.39  E-value=2.1e-06  Score=85.14  Aligned_cols=121  Identities=17%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      .+||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+.+..    .  .+      ...-+++. ++++++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~----~--~~------~~~~~v~~-~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT----P--YS------PTTVRVKA-GEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG----G--GS------SSCCEEEE-CCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh----h--hc------CCCeEEEe-CCHHHh
Confidence            3699999999999999999998885  89999999887664322222110    0  00      00012332 567889


Q ss_pred             cCCCEEEEeccC--Ch------------HHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhh----cC-CCeeeec
Q 010966          225 KDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YS-KDRIVGA  283 (496)
Q Consensus       225 ~~aDlVIeav~e--~~------------~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~----~~-~~r~ig~  283 (496)
                      ++||+||.+++-  ++            .+.+++...+.+++ |++++...|  -|+..+...+    .. +.|++|+
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            999999999842  22            34556666777775 455444332  3444333222    22 3566665

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.38  E-value=4.4e-07  Score=89.43  Aligned_cols=125  Identities=14%  Similarity=0.062  Sum_probs=83.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|+.||++++  +.               +.             ....++ +.++.
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~~-------------~~~~~l~ell~~  174 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------PW-------------RFTNSLEEALRE  174 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------SS-------------CCBSCSHHHHTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------Cc-------------ccCCCHHHHHhh
Confidence            6899999999999999999999999999999864  10               10             012344 44789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcC-CCeeeecccc---CcC------CCCCe
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFF---SPA------HVMPL  294 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~-~~r~ig~hf~---~P~------~~~~l  294 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-  .-..+.+.+.. .-.-.|+..|   .|.      ...+-
T Consensus       175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~n  254 (303)
T 1qp8_A          175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN  254 (303)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTT
T ss_pred             CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCC
Confidence            999999999876544333345667789999887554442  33456666632 2233455555   332      12455


Q ss_pred             EEEEeCCC
Q 010966          295 LEIVRTNQ  302 (496)
Q Consensus       295 veiv~~~~  302 (496)
                      +.++|+..
T Consensus       255 viltPH~~  262 (303)
T 1qp8_A          255 VVATPWVA  262 (303)
T ss_dssp             EEECCSCS
T ss_pred             EEECCCcC
Confidence            66667654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.37  E-value=3.1e-07  Score=91.76  Aligned_cols=102  Identities=16%  Similarity=0.056  Sum_probs=72.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++++.. ...           +.|.             .. .++ +.+++
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g~-------------~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFGV-------------QQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcCc-------------ee-CCHHHHHhc
Confidence            589999999999999999999999999999986542 111           1121             11 234 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++  +.-..+.+.+.
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~  270 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ  270 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHH
Confidence            99999999987655443335566778999988755444  23446666664

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.37  E-value=1.1e-06  Score=87.90  Aligned_cols=102  Identities=16%  Similarity=0.097  Sum_probs=73.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...+..             .|             .....+++ .+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g-------------~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EG-------------AIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TT-------------CEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cC-------------CeEeCCHHHHHhh
Confidence            689999999999999999999999999999986432210             01             12233554 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  278 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALR  278 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence            99999999987665544445666778999988744433  44567777764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.35  E-value=3.2e-06  Score=83.57  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=65.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|.+++..++..+  .+|+++|+++++++.....+.+..          +  .. ..-+++. +++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~----------~--~~-~~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT----------P--FA-HPVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG----------G--GS-CCCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH----------h--hc-CCeEEEE-CCHHHhC
Confidence            58999999999999999999887  489999999887764332221110          0  00 0012333 4688899


Q ss_pred             CCCEEEEeccC--C------------hHHHHHHHHHHHhhCCCCeeE
Q 010966          226 DVDMVIEAIIE--N------------VSLKQQIFADLEKYCPPHCIL  258 (496)
Q Consensus       226 ~aDlVIeav~e--~------------~~~k~~v~~~l~~~~~~~~il  258 (496)
                      +||+||.+++-  +            ..+.+++...+.++++...++
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~ii  113 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLL  113 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEE
Confidence            99999998732  2            345556667788886544433

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.35  E-value=2.3e-07  Score=91.82  Aligned_cols=102  Identities=14%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||+|.||+.+|..+...|++|+.||++++..+..                          .......+++ .+++
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            689999999999999999999999999999987532110                          0011112343 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  244 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALD  244 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHH
Confidence            99999999977665544436667778999988754433  44567777764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.35  E-value=2.3e-07  Score=92.77  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||+.+|..+...|++|+.||++++..                .+             .....++ +.+++
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~~  222 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLARD  222 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHhc
Confidence            689999999999999999999999999999986530                01             1123344 44789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++|+..+.+-  .-..+.+.+.
T Consensus       223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~  273 (340)
T 4dgs_A          223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK  273 (340)
T ss_dssp             CSEEEECC----------CHHHHHHTTTTCEEEECSCC-------------
T ss_pred             CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            999999999777665555467777889999887554443  2345666664

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.34  E-value=2.1e-07  Score=92.37  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||+|.||+.+|..+...|++|+.||++++..+.                 .         .......+++ .+++
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG-----------------F---------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTT-----------------C---------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhh-----------------h---------hcccccCCHHHHHhh
Confidence            68999999999999999999999999999998632111                 0         1111223443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCC-Ceeeecccc--Cc------CCCCCeE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFF--SP------AHVMPLL  295 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~-~r~ig~hf~--~P------~~~~~lv  295 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+... -...++--|  .|      .+..+-|
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  274 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL  274 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTE
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCE
Confidence            99999999976654443334555668899988754433  3446777777432 222344333  23      2234556


Q ss_pred             EEEeC
Q 010966          296 EIVRT  300 (496)
Q Consensus       296 eiv~~  300 (496)
                      .+.|+
T Consensus       275 ilTPH  279 (324)
T 3hg7_A          275 IITPH  279 (324)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            66665

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.34  E-value=5.3e-06  Score=71.71  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~  222 (496)
                      +++|.|+|+|.+|..+|..|...|++|+++|++++.++...+           .|.          ..+... ++   ++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-----------~~~----------~~~~gd~~~~~~l~   64 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED-----------EGF----------DAVIADPTDESFYR   64 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTC----------EEEECCTTCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CCC----------cEEECCCCCHHHHH
Confidence            568999999999999999999999999999999988765431           121          001110 11   11


Q ss_pred             --cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHH
Q 010966          223 --SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (496)
Q Consensus       223 --~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~l  270 (496)
                        .+.++|+||.+++. .+....+...+.+.. ...|++...+....+.+
T Consensus        65 ~~~~~~~d~vi~~~~~-~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           65 SLDLEGVSAVLITGSD-DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             HSCCTTCSEEEECCSC-HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             hCCcccCCEEEEecCC-HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence              25789999999984 444444455555554 56677666555545444

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.33  E-value=2e-06  Score=85.34  Aligned_cols=118  Identities=20%  Similarity=0.333  Sum_probs=71.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i~~~~~~~  222 (496)
                      .+||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+        ..+. .      ...  +++. ++++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~-~------~~~~~~i~~-~~~~   70 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGL-P------FMGQMSLYA-GDYS   70 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSC-C------CTTCEEEC---CGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhH-H------hcCCeEEEE-CCHH
Confidence            3699999999999999999999998  9999999987665322111        1111 0      111  2332 4678


Q ss_pred             cccCCCEEEEeccCCh--------------HHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhh----hc-CCCeeeec
Q 010966          223 SFKDVDMVIEAIIENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER----TY-SKDRIVGA  283 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~--------------~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~----~~-~~~r~ig~  283 (496)
                      ++++||+||.+++-..              .+.+++...+.+++ |+++++..  +-|+..+...    .. .+.|++|+
T Consensus        71 a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           71 DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence            8999999999985322              12356667788885 55544433  3344333222    22 24567665

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.32  E-value=1.9e-06  Score=86.86  Aligned_cols=137  Identities=9%  Similarity=0.054  Sum_probs=86.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||+++.. +...           ..|             +. ..++ +.++.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~-~~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENG-------------VE-PASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTT-------------CE-ECCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcC-------------ee-eCCHHHHHhc
Confidence            58999999999999999999899999999998532 1110           112             11 1244 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeecccc--Cc------CCCCCeEE
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFF--SP------AHVMPLLE  296 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~--~P------~~~~~lve  296 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+....-..++--|  .|      ....+-|.
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvi  310 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFI  310 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEE
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEE
Confidence            99999999987766555546677788999988744433  3446777777432211344333  23      22355676


Q ss_pred             EEeCCC-CCHHHHHH
Q 010966          297 IVRTNQ-TSPQVIVD  310 (496)
Q Consensus       297 iv~~~~-t~~e~~~~  310 (496)
                      +.|+-. .+.++.+.
T Consensus       311 lTPHia~~t~e~~~~  325 (365)
T 4hy3_A          311 RSAHRAGALDSAFKK  325 (365)
T ss_dssp             ECCSCSSCCHHHHHH
T ss_pred             ECCccccCHHHHHHH
Confidence            777643 33444433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.30  E-value=6.3e-07  Score=91.19  Aligned_cols=105  Identities=11%  Similarity=0.038  Sum_probs=72.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|+.||++++..+...           +.|             +....++ +.++.
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999864332211           112             1112334 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS  276 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~  276 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+-  .-..+.+.+..
T Consensus       248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  299 (393)
T 2nac_A          248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES  299 (393)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence            999999999766543322245667789999887555443  33467777743

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.28  E-value=1.1e-06  Score=88.27  Aligned_cols=103  Identities=16%  Similarity=0.067  Sum_probs=71.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|+.||++++.... .           ..|             +....++ +.++.
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~g-------------~~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-R-----------ALG-------------LQRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-H-----------HHT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhH-h-----------hcC-------------CeecCCHHHHHhc
Confidence            58999999999999999999999999999987643110 0           112             1122244 34688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++|+..+++  +....+.+.+.
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~  274 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  274 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHH
Confidence            99999999976554433335556678999988755444  34456777664

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.28  E-value=5.4e-07  Score=89.15  Aligned_cols=125  Identities=16%  Similarity=0.103  Sum_probs=81.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      -++|+|||+|.||..+|..+...|++|+.||++++...                              +. ..++ +.++
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~  192 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLK  192 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHh
Confidence            36899999999999999999999999999999864311                              01 1233 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccC--c------CCCCCeE
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFS--P------AHVMPLL  295 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~--P------~~~~~lv  295 (496)
                      .||+|+.++|...+.+.-+-++..+.++++++++..+++-  .-..+.+.+...-.-.++..|.  |      ....+-+
T Consensus       193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  272 (311)
T 2cuk_A          193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALPNA  272 (311)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCTTE
T ss_pred             hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCCCE
Confidence            8999999999876543322234556788999887555443  3346777775111123344442  3      2234566


Q ss_pred             EEEeCCC
Q 010966          296 EIVRTNQ  302 (496)
Q Consensus       296 eiv~~~~  302 (496)
                      .++|+..
T Consensus       273 iltPh~~  279 (311)
T 2cuk_A          273 VITPHIG  279 (311)
T ss_dssp             EECCSCT
T ss_pred             EECCcCC
Confidence            6777654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.26  E-value=1.3e-06  Score=89.27  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=70.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...                .            .......+++ .++.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHhh
Confidence            689999999999999999999999999999874210                0            0111233454 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS  276 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~  276 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +....+.+.+..
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~  260 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE  260 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc
Confidence            99999999987765544445666778999988754433  455678777743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.25  E-value=1.3e-05  Score=68.71  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---c--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--  221 (496)
                      ++|+|+|+|.||..++..|...|++|+++|++++.++...+          +.+.          ..+... ++   +  
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------~~~~----------~~~~~d~~~~~~l~~   64 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----------EIDA----------LVINGDCTKIKTLED   64 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HCSS----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------hcCc----------EEEEcCCCCHHHHHH
Confidence            58999999999999999999999999999999987654321          0111          000000 01   1  


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ..+.++|+||.+++.+. .. ..+.++.+.++++.+++..+
T Consensus        65 ~~~~~~d~vi~~~~~~~-~~-~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           65 AGIEDADMYIAVTGKEE-VN-LMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             TTTTTCSEEEECCSCHH-HH-HHHHHHHHHTTCCCEEEECS
T ss_pred             cCcccCCEEEEeeCCch-HH-HHHHHHHHHcCCCEEEEEec
Confidence            12678999999998652 22 23344444566667766433

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.21  E-value=2.5e-06  Score=87.30  Aligned_cols=100  Identities=21%  Similarity=0.228  Sum_probs=72.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...                .+            ......+++ .++.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHhc
Confidence            589999999999999999999999999999875310                01            112233453 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+  +....+.+.+.
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            99999999988765544435566778999988744433  34457777764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.19  E-value=4.7e-07  Score=90.28  Aligned_cols=103  Identities=20%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...+...           ..|             +... ++ +.++.
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~ell~~  200 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-----------RLG-------------LRQV-ACSELFAS  200 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence            6999999999999999999999999999999863322211           111             1112 34 34788


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~  251 (330)
T 4e5n_A          201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALE  251 (330)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence            99999999977665544445677788999988755433  34567777664

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.17  E-value=2.3e-06  Score=84.80  Aligned_cols=88  Identities=13%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.||..++..++.. |+ +|++||+++++++...+.          .+.           .+...+++ +.+
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~-----------~~~~~~~~~e~v  194 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG-----------EVRVCSSVQEAV  194 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS-----------CCEECSSHHHHH
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC-----------CeEEeCCHHHHH
Confidence            5899999999999999999876 87 899999999887764321          010           13334555 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ++||+||.|+|...    .++..  +.++++++|.+.+
T Consensus       195 ~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g  226 (312)
T 2i99_A          195 AGADVIITVTLATE----PILFG--EWVKPGAHINAVG  226 (312)
T ss_dssp             TTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECC
T ss_pred             hcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCC
Confidence            89999999998532    23322  4677888777643

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.17  E-value=1.5e-06  Score=87.77  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=73.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      ++|+|||+|.||..+|..+...|++ |+.||++++..+...           +.|             +....+++ .++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence            5899999999999999999999997 999999864433211           112             11223443 468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      +||+|+.++|...+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~  272 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE  272 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence            999999999987654443334566778999988755443  34466777764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.11  E-value=1.8e-06  Score=86.25  Aligned_cols=101  Identities=11%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++++..  . ..           +             .....++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~-----------~-------------~~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EK-----------K-------------GYYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HH-----------T-------------TCBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hh-----------h-------------CeecCCHHHHHhh
Confidence            689999999999999999999999999999987543  1 00           0             0112234 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++  +.-..+.+.+.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  250 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  250 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            99999999977654432224455678999988755443  34567777764

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.09  E-value=9.4e-07  Score=88.36  Aligned_cols=100  Identities=20%  Similarity=0.116  Sum_probs=72.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||++++...              +.+             .... +++ .+++
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--------------~~~-------------~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF--------------EPF-------------LTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGG--------------TTT-------------CEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhh--------------hcc-------------cccc-CHHHHHhc
Confidence            5899999999999999999999999999999875300              000             1112 443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+-++..+.++++++|+..+.+  +.-..+.+.+.
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~  251 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQ  251 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence            99999999976655544445666778999988754433  34567777663

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.09  E-value=2.5e-06  Score=74.33  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=52.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..++..|...|++|+++|+++++++...+.+          +           ..+...+++ +.+++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence            5899999999999999999999999999999998876533211          1           112223343 44689


Q ss_pred             CCEEEEeccCC
Q 010966          227 VDMVIEAIIEN  237 (496)
Q Consensus       227 aDlVIeav~e~  237 (496)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=7.9e-06  Score=67.80  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=36.9

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAG  186 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~  186 (496)
                      ++++|.|+|+|.||..++..|...| ++|+++|++++.++..
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            3579999999999999999999999 9999999999876653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.02  E-value=1.1e-05  Score=78.19  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||.+++..|...|++|+++|+++++++...+.          .|             +...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence            589999999999999999999999999999999876543210          01             2223244 45789


Q ss_pred             CCEEEEeccCChH--HHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVS--LKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~--~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +|+||.|+|....  +.. .+.  .+.+++++++.+.++
T Consensus       187 aDiVi~atp~~~~~~~~~-~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          187 VQVIVNTTSVGLKDEDPE-IFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSEEEECSSTTSSTTCCC-SSC--GGGCCTTSEEEESSS
T ss_pred             CCEEEEeCCCCCCCCCCC-CCC--HHHcCCCCEEEEcCC
Confidence            9999999986541  101 111  245678888776555

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.01  E-value=5.1e-05  Score=74.67  Aligned_cols=119  Identities=14%  Similarity=0.265  Sum_probs=71.4

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          148 KKVAILG-GGLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +||+|+| +|.+|.+++..++..|+  +++++|+  ++++++.....+.+..    ..+  .       .-+++. ++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~----~~~--~-------~~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----AYD--S-------NTRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----TTT--C-------CCEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHH----hhC--C-------CcEEEe-CCHH
Confidence            5899999 99999999999998886  7999999  8776543222221110    000  0       012332 3578


Q ss_pred             cccCCCEEEEecc--CCh------------HHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhh---h-cC-CCeeeec
Q 010966          223 SFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---T-YS-KDRIVGA  283 (496)
Q Consensus       223 ~~~~aDlVIeav~--e~~------------~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~---~-~~-~~r~ig~  283 (496)
                      ++++||+||.+..  ..+            .+.+++.+.+.++.+ +.++...  +-|+..+...   . .. +.|++|+
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~--SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTT--SNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEEC--CSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe--CChHHHHHHHHHHHcCCCHHHeeec
Confidence            8999999999873  221            345566666777654 4544332  3344333222   2 22 4577776

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.00  E-value=4.8e-06  Score=84.10  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|+.||++.+...               .+             . ...+++ .+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------------~~-------------~-~~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG---------------DE-------------G-DFRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT---------------CC-------------S-CBCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc---------------cC-------------c-ccCCHHHHHhh
Confidence            5899999999999999999999999999997543210               00             0 123443 4789


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeeccccC
Q 010966          227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFFS  287 (496)
Q Consensus       227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~~  287 (496)
                      ||+|+.++|-..+    .+.-+-++..+.++++++++..+.+  +.-..+.+.+.. .-...++--|.
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e  238 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWE  238 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccc
Confidence            9999999996655    3333334566678999988744333  345677777743 23344554443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.00  E-value=4.4e-05  Score=65.95  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=61.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE-  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~-  222 (496)
                      .+|.|+|+|.+|..+|..|...|++|+++|++++.++...+           .|.          .-+... ++   ++ 
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-----------~g~----------~~i~gd~~~~~~l~~   66 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-----------RGV----------RAVLGNAANEEIMQL   66 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTC----------EEEESCTTSHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------cCC----------CEEECCCCCHHHHHh
Confidence            58999999999999999999999999999999998776431           121          001111 11   11 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                       .+.++|+||.+++++... ..+...+....+.-.|++-.
T Consensus        67 a~i~~ad~vi~~~~~~~~n-~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           67 AHLECAKWLILTIPNGYEA-GEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             TTGGGCSEEEECCSCHHHH-HHHHHHHHHHCSSSEEEEEE
T ss_pred             cCcccCCEEEEECCChHHH-HHHHHHHHHHCCCCeEEEEE
Confidence             357899999999977543 22334444444444566543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.99  E-value=1.2e-05  Score=69.22  Aligned_cols=95  Identities=19%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~  222 (496)
                      +++|.|+|+|.+|..++..|...|++|+++|++++.++...           +.+.          ..+... ++   ++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~~~----------~~~~~d~~~~~~l~   64 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYAT----------HAVIANATEENELL   64 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-----------TTCS----------EEEECCTTCHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HhCC----------EEEEeCCCCHHHHH
Confidence            45799999999999999999999999999999987655421           1110          001000 11   11


Q ss_pred             --cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          223 --SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       223 --~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                        .+.++|+||.+++.+.+....+...+.. +.+..+++..++
T Consensus        65 ~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~  106 (144)
T 2hmt_A           65 SLGIRNFEYVIVAIGANIQASTLTTLLLKE-LDIPNIWVKAQN  106 (144)
T ss_dssp             TTTGGGCSEEEECCCSCHHHHHHHHHHHHH-TTCSEEEEECCS
T ss_pred             hcCCCCCCEEEECCCCchHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence              2578999999998764433333333333 445566654433

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.99  E-value=4.5e-05  Score=78.22  Aligned_cols=120  Identities=14%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             ceEEEEEeCChh-hHHHHHHHHh--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGLM-GSGIATALIL--S---NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~m-G~~iA~~la~--~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      .+||+|||+|.. +..+...|+.  .   +.+|+++|+++++++... .+...+   ...          . .+++.++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~~---~~~----------~-~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRL---VKD----------R-FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHH---HTT----------S-SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHHH---hhC----------C-eEEEEeCC
Confidence            469999999884 2222334454  3   458999999999877532 221111   110          1 35666778


Q ss_pred             c-ccccCCCEEEEeccC--------------Ch--------------------HHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          221 Y-ESFKDVDMVIEAIIE--------------NV--------------------SLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       221 ~-~~~~~aDlVIeav~e--------------~~--------------------~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      + +++++||+||.++--              +.                    .+..++.+++++++  ++++..-|...
T Consensus        67 ~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPv  144 (417)
T 1up7_A           67 FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPS  144 (417)
T ss_dssp             HHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSH
T ss_pred             HHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChH
Confidence            6 789999999999821              11                    24567778888887  66554333333


Q ss_pred             cH-HHHHhhhcCCCeeeec
Q 010966          266 DL-NLIGERTYSKDRIVGA  283 (496)
Q Consensus       266 ~~-~~la~~~~~~~r~ig~  283 (496)
                      .+ +..........|++|+
T Consensus       145 di~t~a~~k~~p~~rviG~  163 (417)
T 1up7_A          145 GHITEFVRNYLEYEKFIGL  163 (417)
T ss_dssp             HHHHHHHHHTTCCSSEEEC
T ss_pred             HHHHHHHHHhCCCCCEEEe
Confidence            22 2333333323377775

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.98  E-value=4.1e-05  Score=69.23  Aligned_cols=91  Identities=22%  Similarity=0.269  Sum_probs=59.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---c-
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y-  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~-  221 (496)
                      ++|.|+|+|.||..+|..|... |++|+++|++++.++.+.           +.|..          .+... ++   + 
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-----------~~g~~----------~~~gd~~~~~~l~   98 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR-----------SEGRN----------VISGDATDPDFWE   98 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-----------HTTCC----------EEECCTTCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-----------HCCCC----------EEEcCCCCHHHHH
Confidence            4799999999999999999999 999999999998876532           12210          00000 11   1 


Q ss_pred             c--cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          222 E--SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       222 ~--~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      +  .+.++|+||.+++.+.. ...++..+....+...|++.
T Consensus        99 ~~~~~~~ad~vi~~~~~~~~-~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A           99 RILDTGHVKLVLLAMPHHQG-NQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             TBCSCCCCCEEEECCSSHHH-HHHHHHHHHHTTCCSEEEEE
T ss_pred             hccCCCCCCEEEEeCCChHH-HHHHHHHHHHHCCCCEEEEE
Confidence            1  25789999999986543 33444444444334445543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.94  E-value=4.4e-05  Score=67.14  Aligned_cols=39  Identities=31%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      -++|.|+|+|.||..++..|...|++|+++|++++.++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            368999999999999999999999999999999887543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.93  E-value=2.5e-06  Score=85.22  Aligned_cols=101  Identities=15%  Similarity=0.064  Sum_probs=72.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||..+|..+...|++|+.||++++..                   ..     .   .... .++ +.++.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-------------------~~-----~---~~~~-~~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-------------------DH-----P---DFDY-VSLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-------------------CC-----T---TCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh-------------------hH-----h---cccc-CCHHHHHhc
Confidence            589999999999999999999999999999986421                   00     0   0111 244 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS  276 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~  276 (496)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++  +.-..+.+.+..
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  249 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS  249 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence            99999999987765443334566678999988754433  345677777753

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.93  E-value=3e-06  Score=85.77  Aligned_cols=99  Identities=11%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.||+.+|..+...|++|++||++++..               ..|.             . ..+++ .+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g~-------------~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPDG-------------E-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STTS-------------C-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccCc-------------c-cCCHHHHHHh
Confidence            589999999999999999999999999999765421               0110             1 12343 4679


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+    .+.-+-+++.+.++++++++..+.+  +.-..+.+.+.
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~  222 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE  222 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999987654    3332224566778999988744433  34456777774

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.90  E-value=6.1e-05  Score=75.01  Aligned_cols=99  Identities=15%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVN----EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL  214 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~  214 (496)
                      .+||+|+|+ |.+|..++..|+..|+       +|+++|++    +++++.....+        ..+..      .....
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl--------~~~~~------~~~~~   70 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI--------DDCAF------PLLAG   70 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHH--------HTTTC------TTEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHH--------hhhcc------cccCc
Confidence            369999998 9999999999999886       89999999    55444211111        11111      11234


Q ss_pred             eecccC-cccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          215 LTGVLD-YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       215 i~~~~~-~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      +..+++ .+++++||+||.+..  .            +..+.+++.+.+.+++.++++++
T Consensus        71 i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii  130 (329)
T 1b8p_A           71 MTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVL  130 (329)
T ss_dssp             EEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            555566 467999999998762  1            12345567777888864565443

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.89  E-value=4.2e-05  Score=75.65  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=62.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec---ccCc
Q 010966          148 KKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLDY  221 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~  221 (496)
                      +||+|||+ |.+|.+++..|+..|  .+|+++|+++  .+.....        +.... .       ..++..   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~d--------L~~~~-~-------~~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAAD--------LSHIE-T-------RATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHH--------HTTSS-S-------SCEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHH--------HhccC-c-------CceEEEecCCCCH
Confidence            48999998 999999999999988  6999999997  1111111        11111 0       123444   3567


Q ss_pred             c-cccCCCEEEEecc--CCh------------HHHHHHHHHHHhhCCCCeeE
Q 010966          222 E-SFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCIL  258 (496)
Q Consensus       222 ~-~~~~aDlVIeav~--e~~------------~~k~~v~~~l~~~~~~~~il  258 (496)
                      + ++++||+||.++.  ...            .+.+++.+.+.++++...++
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi  114 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC  114 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence            6 5999999999872  221            45666777788887544433

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.86  E-value=6.2e-05  Score=74.85  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             cceEEEEEe-CChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec---cc
Q 010966          146 RVKKVAILG-GGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VL  219 (496)
Q Consensus       146 ~~~kV~VIG-aG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  219 (496)
                      ..+||+||| +|.+|.+++..|+..|  ++|+++|++++. ... ..        +.....        ...+..   ++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~-~d--------L~~~~~--------~~~v~~~~~t~   68 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVT-AD--------ISHMDT--------GAVVRGFLGQQ   68 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHH-HH--------HHTSCS--------SCEEEEEESHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHH-HH--------hhcccc--------cceEEEEeCCC
Confidence            347999999 7999999999999999  799999998761 111 11        111110        012333   44


Q ss_pred             Cc-ccccCCCEEEEecc--CCh------------HHHHHHHHHHHhhCCCCeeE
Q 010966          220 DY-ESFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCIL  258 (496)
Q Consensus       220 ~~-~~~~~aDlVIeav~--e~~------------~~k~~v~~~l~~~~~~~~il  258 (496)
                      ++ +++++||+||.++.  ...            .+.+++.+.+.++.+...++
T Consensus        69 d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~vi  122 (326)
T 1smk_A           69 QLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN  122 (326)
T ss_dssp             HHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence            55 56899999999873  211            45556667777776444443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.84  E-value=5.2e-05  Score=65.55  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             ceEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .++|+|||+    |.||..++..|.+.|++|+.+|++.+.+                             ..+....+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence            468999999    9999999999999999866555542111                             1123344555


Q ss_pred             cc-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          223 SF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       223 ~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      ++ +.+|+||.++|.  +.-.+++.++.+ ...+.++. .+|+.
T Consensus        65 el~~~vDlvii~vp~--~~v~~v~~~~~~-~g~~~i~~-~~~~~  104 (138)
T 1y81_A           65 ELPKDVDVIVFVVPP--KVGLQVAKEAVE-AGFKKLWF-QPGAE  104 (138)
T ss_dssp             GSCTTCCEEEECSCH--HHHHHHHHHHHH-TTCCEEEE-CTTSC
T ss_pred             HhCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEE-cCccH
Confidence            43 579999999993  445566666655 34455554 33444

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.84  E-value=3.3e-06  Score=84.26  Aligned_cols=101  Identities=18%  Similarity=0.064  Sum_probs=70.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      =++|+|||+|.||..+|..+...|++|+.||++++..  .            +             ..+.. .++ +.++
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~  197 (331)
T 1xdw_A          146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------E-------------DYCTQ-VSLDEVLE  197 (331)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------T-------------TTCEE-CCHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------H-------------hcccc-CCHHHHHh
Confidence            3689999999999999999999999999999986421  0            0             00111 244 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~  275 (496)
                      +||+|+.++|...+.+.-+-++..+.++++++++..+.+  +.-..+.+.+.
T Consensus       198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  249 (331)
T 1xdw_A          198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE  249 (331)
T ss_dssp             HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence            999999999976554433324555678999988644433  34567777764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.81  E-value=0.00017  Score=67.18  Aligned_cols=91  Identities=15%  Similarity=0.193  Sum_probs=60.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---c--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--  221 (496)
                      |||.|+|+|.+|..+|..|...|++|+++|++++.++...+.          .|.          .-+... ++   +  
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----------~~~----------~~i~gd~~~~~~l~~   60 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----------LKA----------TIIHGDGSHKEILRD   60 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----------SSS----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----------cCC----------eEEEcCCCCHHHHHh
Confidence            589999999999999999999999999999999987653211          110          001110 11   1  


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEec
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILAS  260 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~s  260 (496)
                      ..+++||+||.+++++..  ..+...+.. ..+...+++-
T Consensus        61 a~i~~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           61 AEVSKNDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             HTCCTTCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEEC
T ss_pred             cCcccCCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEEE
Confidence            136899999999987642  233344433 3455556653

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.80  E-value=6.3e-05  Score=74.15  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec---ccC
Q 010966          148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD  220 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  220 (496)
                      +||+||| +|.+|.+++..++.. +  .+++++|+++ .++.-...        +....        ....++.   +.+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~D--------l~~~~--------~~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVD--------LSHIP--------TAVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHH--------HHTSC--------SSEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHH--------hhCCC--------CCceEEEecCCCc
Confidence            5899999 899999999999876 5  4899999987 33211111        11110        0112332   246


Q ss_pred             cccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEec
Q 010966          221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      ++++++||+||.+...              +..+.+++...+.++++ ++++..
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlv  116 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGI  116 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEE
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE
Confidence            7889999999998621              22344555667777764 554443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.78  E-value=3.5e-05  Score=75.72  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|++|+++|++++..+...           +.|.          ..+. ..++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence            5899999999999999999999999999999987654321           1121          0011 1233 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ||+||.++|...--     ++..+.++++++++..
T Consensus       216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin~  245 (300)
T 2rir_A          216 IDICINTIPSMILN-----QTVLSSMTPKTLILDL  245 (300)
T ss_dssp             CSEEEECCSSCCBC-----HHHHTTSCTTCEEEEC
T ss_pred             CCEEEECCChhhhC-----HHHHHhCCCCCEEEEE
Confidence            99999999964311     1223456777776544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.75  E-value=4.7e-05  Score=74.50  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|..+...|.+|+++|++++..+...           +.|.          ..+. ..++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence            5899999999999999999999999999999987654321           1121          0011 1233 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      +|+||.++|...-- .    +..+.++++.+++..+
T Consensus       214 aDvVi~~~p~~~i~-~----~~l~~mk~~~~lin~a  244 (293)
T 3d4o_A          214 VDVCINTIPALVVT-A----NVLAEMPSHTFVIDLA  244 (293)
T ss_dssp             CSEEEECCSSCCBC-H----HHHHHSCTTCEEEECS
T ss_pred             CCEEEECCChHHhC-H----HHHHhcCCCCEEEEec
Confidence            99999999864321 1    2233567777776443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.72  E-value=5.5e-05  Score=65.97  Aligned_cols=101  Identities=15%  Similarity=0.055  Sum_probs=64.6

Q ss_pred             eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      ++|+|||+    |.||..++..|.+.|++|+.+|++.  +.+                             ..+....++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999966666553  111                             112334455


Q ss_pred             ccc-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhh-cCCCeeee
Q 010966          222 ESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG  282 (496)
Q Consensus       222 ~~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~-~~~~r~ig  282 (496)
                      +++ ..+|+||.++|..  .-.+++.++.+. ....++.. +++. ..++.+.+ ...-+++|
T Consensus        65 ~el~~~~Dlvii~vp~~--~v~~v~~~~~~~-g~~~i~i~-~~~~-~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRNSE--AAWGVAQEAIAI-GAKTLWLQ-LGVI-NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSCST--HHHHHHHHHHHH-TCCEEECC-TTCC-CHHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeCHH--HHHHHHHHHHHc-CCCEEEEc-CChH-HHHHHHHHHHcCCEEEc
Confidence            443 5789999999953  345666666553 44555553 4444 34444443 33445665

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.71  E-value=1e-05  Score=77.43  Aligned_cols=91  Identities=9%  Similarity=0.045  Sum_probs=59.4

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      +|+|||+|.||++++..|+..|. +|+++||++++++...+                      .+.... ..++ +.+++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~----------------------~~~~~~-~~~~~~~~~~  166 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF----------------------PVKIFS-LDQLDEVVKK  166 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS----------------------SCEEEE-GGGHHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----------------------HcccCC-HHHHHhhhcC
Confidence            79999999999999999999998 99999999987654211                      001111 2233 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +|+||.|+|....-....+.  ...++++.++.+....
T Consensus       167 aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~  202 (253)
T 3u62_A          167 AKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF  202 (253)
T ss_dssp             CSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred             CCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence            99999999743210000010  1234677777766555

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.71  E-value=0.00031  Score=69.31  Aligned_cols=98  Identities=19%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC--
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--  220 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--  220 (496)
                      +||+|+|+ |.+|..++..++..|+  ++.++|+  +++.++.....+.+..   ...+  .       .-.+..+++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~---~~~~--~-------~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTR--S-------DANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSC--C-------CCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH---HhcC--C-------CeEEEeCCcch
Confidence            48999999 9999999999998885  7999999  7765443222222110   0000  0       012333333  


Q ss_pred             cccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          221 YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       221 ~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++++++||+||.+.  |.            +..+.+++.+.+.++.  +.++.
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vl  119 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIF  119 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEE
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEE
Confidence            67899999999876  21            2234456666777776  44443

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.66  E-value=0.00015  Score=75.81  Aligned_cols=75  Identities=19%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             eEEEEEeCChhhHH--HHHHHHh----C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          148 KKVAILGGGLMGSG--IATALIL----S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGaG~mG~~--iA~~la~----~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      +||+|||+|..|..  +...++.    .  +.+|+++|+++++++.....+++....   .|         .--+++.++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~---~~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE---LN---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH---HT---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH---cC---------CCeEEEEeC
Confidence            58999999998754  3333433    2  347999999999887644333322211   11         112567788


Q ss_pred             Cc-ccccCCCEEEEec
Q 010966          220 DY-ESFKDVDMVIEAI  234 (496)
Q Consensus       220 ~~-~~~~~aDlVIeav  234 (496)
                      |+ +++++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            87 5689999999886

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.62  E-value=5e-05  Score=78.90  Aligned_cols=96  Identities=20%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||.++|..+...|.+|+++|+++.....+.           ..|             +.. .++ +.+++
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence            5899999999999999999999999999999987643221           112             111 234 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc---ccHHHHHh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE  272 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---~~~~~la~  272 (496)
                      ||+||.+.. ...+   +-.+..+.++++++|+..+++   +....+.+
T Consensus       313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999999962 2221   113444568899988755443   45566766

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.60  E-value=0.00013  Score=70.20  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (496)
                      +|+|||+|.||.+++..|...|++|+++|+++++++...+..          |.             . .+++++++++|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~~-------------~-~~~~~~~~~~D  173 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------GL-------------R-AVPLEKAREAR  173 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------TC-------------E-ECCGGGGGGCS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------cc-------------c-hhhHhhccCCC
Confidence            799999999999999999999999999999998766533210          10             0 12333237899


Q ss_pred             EEEEeccCC
Q 010966          229 MVIEAIIEN  237 (496)
Q Consensus       229 lVIeav~e~  237 (496)
                      +||.|+|..
T Consensus       174 ivi~~tp~~  182 (263)
T 2d5c_A          174 LLVNATRVG  182 (263)
T ss_dssp             EEEECSSTT
T ss_pred             EEEEccCCC
Confidence            999999865

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.58  E-value=0.00011  Score=69.84  Aligned_cols=87  Identities=20%  Similarity=0.142  Sum_probs=57.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |+||+|+|+|.||+.++..+...+.+++. +|++++.                ..|             +..+++++++.
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~~g-------------v~v~~dl~~l~   53 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------TTP-------------YQQYQHIADVK   53 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------CC-------------SCBCSCTTTCT
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------cCC-------------CceeCCHHHHh
Confidence            67999999999999999999988777554 7887641                011             23455665544


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      ++|+||+....+     .+...+.  +..+.-+++.|++++.++
T Consensus        54 ~~DVvIDft~p~-----a~~~~~~--l~~g~~vVigTTG~s~e~   90 (243)
T 3qy9_A           54 GADVAIDFSNPN-----LLFPLLD--EDFHLPLVVATTGEKEKL   90 (243)
T ss_dssp             TCSEEEECSCHH-----HHHHHHT--SCCCCCEEECCCSSHHHH
T ss_pred             CCCEEEEeCChH-----HHHHHHH--HhcCCceEeCCCCCCHHH
Confidence            999999866422     2233333  556665555666776543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.56  E-value=6.6e-05  Score=78.25  Aligned_cols=88  Identities=19%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.||.++|..+...|.+|+++|+++.....+.           ..|             ... .++ +.+++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G-------------~~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEG-------------YRV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcC-------------CEe-CCHHHHHhc
Confidence            5899999999999999999999999999999987532211           112             111 234 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      ||+||.++. ...+   +-++..+.++++++|+..+++
T Consensus       333 aDiVi~~~~-t~~l---I~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATG-NYHV---INHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSS-SSCS---BCHHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCC-cccc---cCHHHHhhCCCCcEEEEcCCC
Confidence            999999983 2211   113445568999988755443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.54  E-value=0.00012  Score=76.56  Aligned_cols=96  Identities=26%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+|+.+...|.+|+++|++++.++.+.           +.|.             . ..++ +.+++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-----------~~Ga-------------~-~~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAM-----------MEGF-------------D-VVTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------E-EecHHHHHhC
Confidence            5899999999999999999999999999999998765532           1231             0 0122 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc---ccHHHHHh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE  272 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---~~~~~la~  272 (496)
                      +|+||++++...-+.    .+..+.++++.+|+...+.   ++...+..
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG~~~~eId~~aL~~  374 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIGHFDNEIDMAGLER  374 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECSSSGGGBCHHHHHH
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeCCCCCccCHHHHHH
Confidence            999999986543222    2344557888877644332   34455544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.53  E-value=5.5e-05  Score=71.53  Aligned_cols=58  Identities=21%  Similarity=0.346  Sum_probs=44.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-  224 (496)
                      +||+|||+|.||..++..+...|++| .++|+++. .+.                               ..+++++ + 
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~   48 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQ   48 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhc
Confidence            48999999999999999999899997 79998842 110                               1334433 3 


Q ss_pred             cCCCEEEEeccCC
Q 010966          225 KDVDMVIEAIIEN  237 (496)
Q Consensus       225 ~~aDlVIeav~e~  237 (496)
                      .++|+||+|+|.+
T Consensus        49 ~~~DvVv~~~~~~   61 (236)
T 2dc1_A           49 REMDVAVEAASQQ   61 (236)
T ss_dssp             SCCSEEEECSCHH
T ss_pred             CCCCEEEECCCHH
Confidence            5899999999865

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.53  E-value=0.00017  Score=71.81  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCC--c-----EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec
Q 010966          148 KKVAILG-GGLMGSGIATALILSNY--P-----VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~--~-----V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (496)
                      +||+|+| +|.+|..++..|+..|+  +     ++++|+++  +.++.....+.        ....      .....+..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~--------~~~~------~~~~~~~~   69 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQ--------DCAL------PLLKDVIA   69 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH--------HTCC------TTEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhH--------hhhh------cccCCEEE
Confidence            6999999 79999999999999887  6     99999975  33332222111        1111      01123444


Q ss_pred             cc-CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCe
Q 010966          218 VL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHC  256 (496)
Q Consensus       218 ~~-~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~  256 (496)
                      ++ +++++++||+||.+.  |.            +..+.+++...+.++.+++.
T Consensus        70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~  123 (333)
T 5mdh_A           70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV  123 (333)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            44 467899999999875  21            23455667777888877764

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.47  E-value=0.0007  Score=67.52  Aligned_cols=96  Identities=11%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      +.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+           .           .+ ....+++++ 
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~g-~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE-----------A-----------NG-AEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH-----------T-----------TT-CEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-----------H-----------cC-CceeCCHHHH
Confidence            46999999999999999999886 77766 89999988665321           1           11 233456654 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      ++  ++|+|+.|+|.....  ++.....+.  ...+++-...+.++++
T Consensus        61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~  104 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTHV--DLITRAVER--GIPALCEKPIDLDIEM  104 (344)
T ss_dssp             TTCSCCCEEEECSCGGGHH--HHHHHHHHT--TCCEEECSCSCSCHHH
T ss_pred             hcCCCCCEEEEeCCchhhH--HHHHHHHHc--CCcEEEECCCCCCHHH
Confidence            44  799999999987643  222222221  2235554444555543

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.46  E-value=0.00029  Score=70.22  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (496)
                      -||+|+|+ |.+|.+++..++...+       ++.|+|+++..  ++...-.+        .....      .....+..
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL--------~~~~~------~~~~~~~~   90 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAEL--------EDCAF------PLLDKVVV   90 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH--------HHTTC------TTEEEEEE
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhh--------hhcCc------cCCCcEEE
Confidence            49999997 9999999999988754       79999998642  22111111        11111      01223333


Q ss_pred             ccC-cccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966          218 VLD-YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       218 ~~~-~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      +++ ++++++||+||.+.  |-            +..+.+++...+.++++++++|.
T Consensus        91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vl  147 (345)
T 4h7p_A           91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVV  147 (345)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEE
Confidence            444 57799999999865  22            23355566667888888887554

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.41  E-value=0.00032  Score=70.25  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.||..++..+..  ...+|++||++++++++..+.+..      ..|           -.+...+++ +.+
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g-----------~~~~~~~~~~eav  192 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSG-----------LTIRRASSVAEAV  192 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTT-----------CEEEECSSHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccC-----------ceEEEeCCHHHHH
Confidence            589999999999999988754  346899999999988775432210      001           012334455 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ++||+||.|+|....  ..++.  .+.+++++.+...+|
T Consensus       193 ~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          193 KGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             TTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSC
T ss_pred             hcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECCC
Confidence            899999999986510  01111  134567776654433

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.41  E-value=0.00045  Score=68.33  Aligned_cols=72  Identities=21%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             ceEEEEEeCChhhH-HHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGS-GIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~-~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      +.||+|||+|.||. .++..+... +++|+++|++++.++...+.          .|. .          ...+++.+.+
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g~-~----------~~~~~~~~~l   60 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRV-S----------ATCTDYRDVL   60 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTC-C----------CCCSSTTGGG
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cCC-C----------ccccCHHHHh
Confidence            36899999999998 488888764 78888999999887654321          121 0          0022333445


Q ss_pred             -cCCCEEEEeccCChH
Q 010966          225 -KDVDMVIEAIIENVS  239 (496)
Q Consensus       225 -~~aDlVIeav~e~~~  239 (496)
                       .++|+|+.|+|....
T Consensus        61 ~~~~D~V~i~tp~~~h   76 (323)
T 1xea_A           61 QYGVDAVMIHAATDVH   76 (323)
T ss_dssp             GGCCSEEEECSCGGGH
T ss_pred             hcCCCEEEEECCchhH
Confidence             689999999997653

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.39  E-value=0.001  Score=66.70  Aligned_cols=71  Identities=23%  Similarity=0.328  Sum_probs=53.3

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ++.||+|||+|.||..++..+.+.  +++|+ ++|++++.++...+.          .|             +...++++
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~~-------------~~~~~~~~   68 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------TG-------------ARGHASLT   68 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------HC-------------CEEESCHH
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CceeCCHH
Confidence            457999999999999999999887  77755 899999887664321          11             23456665


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 010966          223 S-FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~  239 (496)
                      + ++  ++|+|+.|+|....
T Consensus        69 ~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           69 DMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             HHHHHCCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEECCCcHHH
Confidence            4 43  79999999997754

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.38  E-value=0.00038  Score=69.25  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=72.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+.+.....             +.+             .. ..+++ .++.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~~  194 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLKE  194 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHhh
Confidence            68999999999999999999999999999987532111             111             11 22343 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++|+ |+|   .+.-..|.+.+.
T Consensus       195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence            999999999777655444455666789999886 454   345567877774

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.38  E-value=0.00081  Score=67.59  Aligned_cols=108  Identities=14%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhCCC--c---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-c
Q 010966          147 VKKVAILG-GGLMGSGIATALILSNY--P---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L  219 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~G~--~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~  219 (496)
                      ..||+||| +|.+|.+++..++..+.  +   |.++|.+.+..+...+...    ..+..+..      ..+..++.+ .
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~a----mDL~h~~~------p~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA----MELEDSLY------PLLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH----HHHHTTTC------TTEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHH----HhHHhhhh------hhcCCcEEecC
Confidence            46999999 79999999999999876  3   8887765432211111100    01122211      011233333 4


Q ss_pred             CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          220 DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       220 ~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +++++++||+||.+.  |-            +..+.+.+...+.++..+++++...|..
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP  160 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP  160 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            588999999999864  21            2234445555677775677766554443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.38  E-value=0.00016  Score=73.77  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.+|.++|..+...|.+|+++|+++.....+.           ..|             .. ..++ +.+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~-~~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQ-VLLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Ce-ecCHHHHHhh
Confidence            5899999999999999999999999999999987654321           112             11 1244 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc---ccHHHHHh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE  272 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---~~~~~la~  272 (496)
                      ||+||.+....--+.    .+..+.++++++|+..+.+   +.+..+..
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINvgRg~vEID~~~L~~  311 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNIGHFDTEIQVAWLKA  311 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence            999998653221111    2344567899988644322   44555544

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.37  E-value=0.00068  Score=66.50  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=61.3

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +.||+|||+|.||.. ++..+.+ .+++|+ ++|++++.++...+.          .|             +...+++++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~~-------------~~~~~~~~~   62 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD----------YR-------------IMPFDSIES   62 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH----------HT-------------CCBCSCHHH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHHH
Confidence            469999999999997 8887876 477877 899999987764321          11             112345543


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                       ++++|+|+.|+|.....  ++.....+  ....+++--..+.+.++
T Consensus        63 ll~~~D~V~i~tp~~~h~--~~~~~al~--~gk~vl~EKP~~~~~~~  105 (308)
T 3uuw_A           63 LAKKCDCIFLHSSTETHY--EIIKILLN--LGVHVYVDKPLASTVSQ  105 (308)
T ss_dssp             HHTTCSEEEECCCGGGHH--HHHHHHHH--TTCEEEECSSSSSSHHH
T ss_pred             HHhcCCEEEEeCCcHhHH--HHHHHHHH--CCCcEEEcCCCCCCHHH
Confidence             56899999999977643  22222222  12235554455555543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.36  E-value=0.0011  Score=65.78  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      +.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+.          .|             +. .+++++ 
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~-------------~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------YG-------------CE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-------------CE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------hC-------------CC-cCCHHHH
Confidence            46999999999999999999875 78876 799999886654321          11             12 345543 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      ++  ++|+|+.|+|.....  ++.....+  ....+++-...+.+.++
T Consensus        59 l~~~~~D~V~i~tp~~~h~--~~~~~al~--~gk~v~~EKP~~~~~~~  102 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHA--DLIERFAR--AGKAIFCEKPIDLDAER  102 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHHHH--TTCEEEECSCSCSSHHH
T ss_pred             hcCCCCCEEEEeCCchhHH--HHHHHHHH--cCCcEEEecCCCCCHHH
Confidence            44  799999999977643  22222222  12335554444555544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.35  E-value=0.00044  Score=68.24  Aligned_cols=70  Identities=10%  Similarity=-0.006  Sum_probs=49.8

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ..||+|||+|.||.. ++..+.. .|++|+ ++|++++.++...+.          .|             +...+++++
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~~   61 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WR-------------IPYADSLSS   61 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HT-------------CCBCSSHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCccCcHHH
Confidence            469999999999997 8888876 477866 999998876553221          11             112344444


Q ss_pred             c-cCCCEEEEeccCChH
Q 010966          224 F-KDVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~  239 (496)
                      + .++|+|+.|+|....
T Consensus        62 l~~~~D~V~i~tp~~~h   78 (319)
T 1tlt_A           62 LAASCDAVFVHSSTASH   78 (319)
T ss_dssp             HHTTCSEEEECSCTTHH
T ss_pred             hhcCCCEEEEeCCchhH
Confidence            4 679999999997654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.35  E-value=0.0022  Score=55.88  Aligned_cols=94  Identities=7%  Similarity=0.048  Sum_probs=57.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~  222 (496)
                      ++|.|+|+|.+|..++..|...|++|+++|++ ++.++.....        ...|.          .-+... ++   ++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~--------~~~~~----------~~i~gd~~~~~~l~   65 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR--------LGDNA----------DVIPGDSNDSSVLK   65 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH--------HCTTC----------EEEESCTTSHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHh--------hcCCC----------eEEEcCCCCHHHHH
Confidence            47999999999999999999999999999998 5544432211        11110          011111 11   21


Q ss_pred             --cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          223 --SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       223 --~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                        .+.++|+||.+++.+. ....+........+...|++-
T Consensus        66 ~a~i~~ad~vi~~~~~d~-~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           66 KAGIDRCRAILALSDNDA-DNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHTTTTCSEEEECSSCHH-HHHHHHHHHHHHTSSSCEEEE
T ss_pred             HcChhhCCEEEEecCChH-HHHHHHHHHHHHCCCCEEEEE
Confidence              3789999999998653 233333333333344445553

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.35  E-value=0.00025  Score=71.93  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||+|.||..+++.+...|.+|+++|++++.++.+.+.          .|....       .......++ +.+++
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~----------~g~~~~-------~~~~~~~~l~~~l~~  231 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE----------FCGRIH-------TRYSSAYELEGAVKR  231 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTSSE-------EEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh----------cCCeeE-------eccCCHHHHHHHHcC
Confidence            689999999999999999999999999999999887654321          121000       000001112 23568


Q ss_pred             CCEEEEeccCCh-HHHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENV-SLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~-~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +|+||+|++... +...-+.++..+.++++.+|+..
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence            999999884322 11111233444557777776543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.32  E-value=0.00027  Score=69.24  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=35.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  186 (496)
                      ++|.|||+|.||.+++..|+..|+ +|+++|+++++++..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999998 999999999887654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.32  E-value=0.00047  Score=68.31  Aligned_cols=70  Identities=17%  Similarity=0.105  Sum_probs=51.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.||..++..+..  ...+|.+||++++++++..+++..       .+ +          .+. .+++ +.+
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v  186 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS  186 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence            589999999999999998886  346899999999988876543211       11 1          123 3444 457


Q ss_pred             cCCCEEEEeccCC
Q 010966          225 KDVDMVIEAIIEN  237 (496)
Q Consensus       225 ~~aDlVIeav~e~  237 (496)
                       ++|+||.|+|..
T Consensus       187 -~aDvVi~aTp~~  198 (322)
T 1omo_A          187 -RCDVLVTTTPSR  198 (322)
T ss_dssp             -SSSEEEECCCCS
T ss_pred             -CCCEEEEeeCCC
Confidence             899999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.32  E-value=0.00026  Score=68.17  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=50.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|.|||+|.||++++..|+..|.+|++++|++++++... ++          +             +. ..+++++.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~-~~~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CD-CFMEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CE-EESSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------Ce-EecHHHhccC
Confidence            5899999999999999999999999999999998766532 11          1             11 1123445589


Q ss_pred             CEEEEeccCC
Q 010966          228 DMVIEAIIEN  237 (496)
Q Consensus       228 DlVIeav~e~  237 (496)
                      |+||.|+|..
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999999865

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.30  E-value=0.0008  Score=66.78  Aligned_cols=98  Identities=10%  Similarity=-0.011  Sum_probs=62.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++.||+|||+|.||..++..+... +++|+ ++|++++.++...+.          .|.            ....+++++
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~   61 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------LAI------------PVAYGSYEE   61 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------TTC------------CCCBSSHHH
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------cCC------------CceeCCHHH
Confidence            346999999999999999999885 67766 789998876654321          111            123456554


Q ss_pred             -cc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       224 -~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                       +.  ++|+|+.|+|.....  ++.....+.  ...+++-...+.+.++
T Consensus        62 ll~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~e  106 (330)
T 3e9m_A           62 LCKDETIDIIYIPTYNQGHY--SAAKLALSQ--GKPVLLEKPFTLNAAE  106 (330)
T ss_dssp             HHHCTTCSEEEECCCGGGHH--HHHHHHHHT--TCCEEECSSCCSSHHH
T ss_pred             HhcCCCCCEEEEcCCCHHHH--HHHHHHHHC--CCeEEEeCCCCCCHHH
Confidence             33  799999999987643  222222221  2235554444555543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.28  E-value=0.0005  Score=69.48  Aligned_cols=97  Identities=22%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|+|+|.+|..+++.+...|++|+++|++++.++...+.          .|..       .........++ +.+++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~----------~g~~-------~~~~~~~~~~l~~~~~~  229 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV----------FGGR-------VITLTATEANIKKSVQH  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTS-------EEEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----------cCce-------EEEecCCHHHHHHHHhC
Confidence            689999999999999999999999999999999877654221          1110       00000001112 23568


Q ss_pred             CCEEEEeccCChH-HHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +|+||+|++-... ...-+.++..+.++++.+|+..
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence            9999999974321 1111234444556676666543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.27  E-value=0.0011  Score=66.08  Aligned_cols=71  Identities=20%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      +.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+.          .|            .....+++++ 
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~------------~~~~~~~~~~l   59 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LG------------VEKAYKDPHEL   59 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HT------------CSEEESSHHHH
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hC------------CCceeCCHHHH
Confidence            46999999999999999998875 67765 789999887654321          11            1123455544 


Q ss_pred             cc--CCCEEEEeccCChH
Q 010966          224 FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~  239 (496)
                      ++  ++|+|+.|+|....
T Consensus        60 l~~~~~D~V~i~tp~~~h   77 (344)
T 3ezy_A           60 IEDPNVDAVLVCSSTNTH   77 (344)
T ss_dssp             HHCTTCCEEEECSCGGGH
T ss_pred             hcCCCCCEEEEcCCCcch
Confidence            44  79999999997754

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.26  E-value=0.0006  Score=69.11  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|||.|..|.+=|.+|..+|++|++--+.....+..     +.+++..+.|             ++..+-.++++.+
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~G-------------f~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATENG-------------FKVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHTT-------------CEEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHCC-------------CEecCHHHHHHhC
Confidence            799999999999999999999999998876643321110     1112222333             2233334678999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCC--CeeeeccccCcCC----------CCCeE
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSK--DRIVGAHFFSPAH----------VMPLL  295 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~--~r~ig~hf~~P~~----------~~~lv  295 (496)
                      |+|+..+|+.  .-..++.+|.++++++..+.- +.+..+..  ..+..|  ..++-+-|-.|-+          ..|.+
T Consensus       100 DvV~~L~PD~--~q~~vy~~I~p~lk~G~~L~f-aHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l  174 (491)
T 3ulk_A          100 DLVINLTPDK--QHSDVVRTVQPLMKDGAALGY-SHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL  174 (491)
T ss_dssp             SEEEECSCGG--GHHHHHHHHGGGSCTTCEEEE-SSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred             CEEEEeCChh--hHHHHHHHHHhhCCCCCEEEe-cCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence            9999999976  455789999999999987753 44554432  112222  2233333333321          22443


Q ss_pred             EEEe-CCCCCHHHHHHHHHHHHHcCCc
Q 010966          296 EIVR-TNQTSPQVIVDLLDIGKKIKKT  321 (496)
Q Consensus       296 eiv~-~~~t~~e~~~~~~~l~~~lGk~  321 (496)
                      .-|- ....+-...+.+..+...+|..
T Consensus       175 iAVhqeqD~sG~a~~~AlayA~aiG~~  201 (491)
T 3ulk_A          175 IAVHPENDPKGEGMAIAKAWAAATGGH  201 (491)
T ss_dssp             EEECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred             EEEEeCCCCchhHHHHHHHHHHhcCCC
Confidence            3331 1233445677788888888853

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.25  E-value=0.00043  Score=66.88  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc--c
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF--K  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~  225 (496)
                      ++|.|+|+|.||.+++..|+..|.+|+++++++++++...+.+.       ..+            .+.. .+++++  .
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~-------~~~------------~~~~-~~~~~~~~~  179 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQA-VSMDSIPLQ  179 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEE-EEGGGCCCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcc-------ccC------------CeEE-eeHHHhccC
Confidence            58999999999999999999999999999999988766433211       000            1111 123344  3


Q ss_pred             CCCEEEEeccCCh
Q 010966          226 DVDMVIEAIIENV  238 (496)
Q Consensus       226 ~aDlVIeav~e~~  238 (496)
                      ++|+||.|+|-..
T Consensus       180 ~~DivIn~t~~~~  192 (272)
T 1p77_A          180 TYDLVINATSAGL  192 (272)
T ss_dssp             CCSEEEECCCC--
T ss_pred             CCCEEEECCCCCC
Confidence            8999999998553

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.25  E-value=0.00033  Score=69.06  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-S-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++|+|||+|.||..++..+.. . ..+|++||++  +.++..+++...+      |.           .+... ++ +.+
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g~-----------~~~~~-~~~eav  181 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------GV-----------PARMA-APADIA  181 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------TS-----------CEEEC-CHHHHH
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------CC-----------eEEEe-CHHHHH
Confidence            589999999999999998876 3 4589999999  4443333222110      21           12233 44 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      ++||+||.|+|....    ++.  .+.++++++|.+..|.
T Consensus       182 ~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          182 AQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             HHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCCS
T ss_pred             hhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCCC
Confidence            899999999986432    222  2456788877665543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.25  E-value=0.00035  Score=70.37  Aligned_cols=40  Identities=15%  Similarity=0.052  Sum_probs=36.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .||+|||+|.||..+|+.+...|.+|+++|++++.++.+.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  224 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR  224 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6999999999999999999999999999999998777643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00018  Score=73.01  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=36.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .||+|||+|.||..+++.+...|.+|+++|++++.++.+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  229 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV  229 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            599999999999999999999999999999999887664

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.22  E-value=0.0012  Score=65.78  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             cceEEEEEeCChhhHHHHHHHH-h-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSGIATALI-L-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la-~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .+.||+|||+|.||..++..+. . .|++ |.++|+++++++...+          +.|.            ....++++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g~------------~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELGV------------ETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTCC------------SEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhCC------------CcccCCHH
Confidence            4579999999999999999988 5 4777 4688999987665321          1121            02234554


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 010966          223 S-FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~  239 (496)
                      + ++  ++|+|++|+|....
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHhH
Confidence            4 33  69999999997654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.21  E-value=0.0017  Score=64.91  Aligned_cols=96  Identities=20%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      ..||+|||+|.||..++..+.+. |++|+ ++|++++.++...+.          .|             +...+++++ 
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~~~   61 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YN-------------CAGDATMEAL   61 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HT-------------CCCCSSHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHHHH
Confidence            46899999999999999999876 78855 889999887654321          11             112445544 


Q ss_pred             c--cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          224 F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       224 ~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      +  .++|+|+.|+|.....  ++.....+  ....+++-...+.+.++
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~--~gk~vl~EKP~~~~~~~  105 (354)
T 3db2_A           62 LAREDVEMVIITVPNDKHA--EVIEQCAR--SGKHIYVEKPISVSLDH  105 (354)
T ss_dssp             HHCSSCCEEEECSCTTSHH--HHHHHHHH--TTCEEEEESSSCSSHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHHH--cCCEEEEccCCCCCHHH
Confidence            4  5799999999987643  22222221  12335655444555543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.21  E-value=0.00087  Score=68.46  Aligned_cols=87  Identities=21%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|             ... .++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~v-v~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEV-VTLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------cee-ccHHHHHhh
Confidence            5899999999999999999999999999999986543221           112             111 233 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +|+|+.+.... .+   +-++..+.++++++|+ |++.
T Consensus       303 ADIVv~atgt~-~l---I~~e~l~~MK~GAILI-NvGR  335 (464)
T 3n58_A          303 ADIVVTTTGNK-DV---ITIDHMRKMKDMCIVG-NIGH  335 (464)
T ss_dssp             CSEEEECCSSS-SS---BCHHHHHHSCTTEEEE-ECSS
T ss_pred             CCEEEECCCCc-cc---cCHHHHhcCCCCeEEE-EcCC
Confidence            99999986432 11   1134445678999886 5543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.21  E-value=0.00038  Score=70.89  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=59.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|+|+|.+|.++|..+...|.+|+++|+++.....+.           ..|             .. ..++ +.++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G-------------~~-v~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDG-------------FR-LVKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CE-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcC-------------CE-eccHHHHHhc
Confidence            5899999999999999999999999999999986543321           112             11 1233 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      +|+||.| ++...+   +-.+..+.++++++|+...
T Consensus       276 ADIVi~a-tgt~~l---I~~e~l~~MK~gailINvg  307 (435)
T 3gvp_A          276 VDIVITC-TGNKNV---VTREHLDRMKNSCIVCNMG  307 (435)
T ss_dssp             CSEEEEC-SSCSCS---BCHHHHHHSCTTEEEEECS
T ss_pred             CCEEEEC-CCCccc---CCHHHHHhcCCCcEEEEec
Confidence            9999997 443321   1123445578898876443

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.19  E-value=0.00013  Score=76.04  Aligned_cols=120  Identities=22%  Similarity=0.221  Sum_probs=75.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhh--cccCCCCCc--------hhHHHHHHHHH
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATL--YKTDKIEPL--------GEAREIFKFAR   70 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~--~~~~~~~~~--------~~~~~~~~~~~   70 (496)
                      |++||++++|+||+++||||+|||++++++++.++|++++..+ |.....  .....+...        ..+...+..++
T Consensus       198 LlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~-p~Av~~K~l~~~~l~r~~~~~gl~y~~~~~ai~ra~  276 (556)
T 2w3p_A          198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQS-DRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAK  276 (556)
T ss_dssp             HTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTC-CCCTTCCCCCCCCCCCEEETTEEEETTEEEEEETTT
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCC-hHHHhhhhhhcchhhhhhhhccccHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999873 432111  101111110        00000011222


Q ss_pred             HHHHhhCC-CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHhhcCCCC
Q 010966           71 AQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC-KSLVHIFFAQRGTSK  133 (496)
Q Consensus        71 ~~~~~~~~-~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a-~~~i~aF~~kr~~~~  133 (496)
                      +.+..+.+ ..|+|.+.++++....            ..|..+..+++. .+.++.|++......
T Consensus       277 r~a~~~~~g~~~a~~~~ld~i~aa~------------~~~~~l~~~~el~~All~l~~ne~~~~~  329 (556)
T 2w3p_A          277 RIATFTAKAPQTEPPASIDAIVAAG------------ANWWPLKFAREFDDAILSMRTNELAVGT  329 (556)
T ss_dssp             TEEEEEEECCSSCCCCSHHHHHHHG------------GGSHHHHHHHHHHHHHHHHHHHCSSCCE
T ss_pred             HHHHHHhcCCCCCchhhHHHHHHhh------------hcchhhhhhhHHHHHHHhhhhccHHHhH
Confidence            22222332 4677877777777543            344555556666 678899998776543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.19  E-value=0.00066  Score=65.83  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-c
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-K  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~  225 (496)
                      ++|.|+|+|.||.+++..|+..|. +|++++|++++++...+.+.       ..+            .+... +++++ .
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~~-~~~~l~~  186 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKAQ-AFEQLKQ  186 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEE-EGGGCCS
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeEe-eHHHhcC
Confidence            589999999999999999999996 99999999988776543221       001            11111 22222 6


Q ss_pred             CCCEEEEeccCCh
Q 010966          226 DVDMVIEAIIENV  238 (496)
Q Consensus       226 ~aDlVIeav~e~~  238 (496)
                      ++|+||.|+|...
T Consensus       187 ~aDiIInaTp~gm  199 (281)
T 3o8q_A          187 SYDVIINSTSASL  199 (281)
T ss_dssp             CEEEEEECSCCCC
T ss_pred             CCCEEEEcCcCCC
Confidence            8899999988654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.19  E-value=0.00085  Score=64.69  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=36.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|+|+|.||.+++..|+..|.+|+++|+++++++...
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la  159 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA  159 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            5899999999999999999999999999999998776543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.15  E-value=0.0005  Score=67.72  Aligned_cols=68  Identities=21%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      ..||+|||+|.||..++..+.+. +++ |.++|++++.++...                 .        .+...+++++ 
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~-----------------~--------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVP-----------------P--------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCC-----------------T--------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHH-----------------h--------hCcccCCHHHH
Confidence            46999999999999999999885 676 459999988654311                 0        0223455544 


Q ss_pred             cc--CCCEEEEeccCChH
Q 010966          224 FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~  239 (496)
                      ++  ++|+|+.|+|....
T Consensus        65 l~~~~~D~V~i~tp~~~h   82 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATH   82 (315)
T ss_dssp             HTCTTCCEEEEESCGGGH
T ss_pred             hhCCCCCEEEEeCChHHH
Confidence            43  79999999997653

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.15  E-value=0.0012  Score=65.33  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             eEEEEEeCChhhHHH-HHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          148 KKVAILGGGLMGSGI-ATALILSNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~i-A~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      .||+|||+|.||..+ +..+...|++|+ ++|++++.++...+          +.|.            ....+++++ +
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~----------~~g~------------~~~~~~~~~~l   58 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYAT----------ENGI------------GKSVTSVEELV   58 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HTTC------------SCCBSCHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHH----------HcCC------------CcccCCHHHHh
Confidence            379999999999998 777777788865 88999987665321          1121            012345544 3


Q ss_pred             c--CCCEEEEeccCChH
Q 010966          225 K--DVDMVIEAIIENVS  239 (496)
Q Consensus       225 ~--~aDlVIeav~e~~~  239 (496)
                      +  ++|+|+.|+|....
T Consensus        59 ~~~~~D~V~i~tp~~~h   75 (332)
T 2glx_A           59 GDPDVDAVYVSTTNELH   75 (332)
T ss_dssp             TCTTCCEEEECSCGGGH
T ss_pred             cCCCCCEEEEeCChhHh
Confidence            3  59999999997653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.15  E-value=0.00076  Score=67.77  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=35.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++|+|+|+|.||..+|..|...|.+|+++|+++++++..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999876653

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.12  E-value=0.0026  Score=63.38  Aligned_cols=72  Identities=15%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +.||+|||+|.||...+..+. . .+++|+ ++|++++.++...+.          .|.           .....+++++
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------~g~-----------~~~~~~~~~~   60 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------YQL-----------NATVYPNDDS   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------TTC-----------CCEEESSHHH
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-----------CCeeeCCHHH
Confidence            358999999999999999998 4 477765 889999887654321          110           1234556654


Q ss_pred             -cc--CCCEEEEeccCChH
Q 010966          224 -FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 -~~--~aDlVIeav~e~~~  239 (496)
                       ++  ++|+|+.|+|....
T Consensus        61 ll~~~~~D~V~i~tp~~~h   79 (344)
T 3mz0_A           61 LLADENVDAVLVTSWGPAH   79 (344)
T ss_dssp             HHHCTTCCEEEECSCGGGH
T ss_pred             HhcCCCCCEEEECCCchhH
Confidence             33  59999999997764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.08  E-value=0.00015  Score=70.20  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~  185 (496)
                      ++|.|||+|.||.+++..|+..|. +|++++|++++++.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            589999999999999999999999 99999999876543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.07  E-value=0.0013  Score=63.46  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=49.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||+|-||++++..|+..|. +|++++|++++++...+.+          +.             ....++. +.+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~~-------------~~~~~~~-~~~  175 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------GY-------------AYINSLE-NQQ  175 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------TC-------------EEESCCT-TCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC-------------ccchhhh-ccc
Confidence            579999999999999999999997 8999999998876543221          10             0111222 468


Q ss_pred             CCEEEEeccCCh
Q 010966          227 VDMVIEAIIENV  238 (496)
Q Consensus       227 aDlVIeav~e~~  238 (496)
                      +|+||.|+|...
T Consensus       176 ~DivInaTp~gm  187 (271)
T 1npy_A          176 ADILVNVTSIGM  187 (271)
T ss_dssp             CSEEEECSSTTC
T ss_pred             CCEEEECCCCCc
Confidence            999999998553

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.06  E-value=0.0015  Score=56.46  Aligned_cols=82  Identities=16%  Similarity=0.136  Sum_probs=54.7

Q ss_pred             eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++|+|||+    |.||..++..|.+.|++  +|++|+.....                         ....+....++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            48999999    89999999999999997  77777752110                         0112334455555


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      + +..|++|.++|..  .-.+++.++.+.-.. .++.
T Consensus        67 l~~~vDlavi~vp~~--~~~~v~~~~~~~gi~-~i~~  100 (140)
T 1iuk_A           67 LKEPVDILDVFRPPS--ALMDHLPEVLALRPG-LVWL  100 (140)
T ss_dssp             CCSCCSEEEECSCHH--HHTTTHHHHHHHCCS-CEEE
T ss_pred             CCCCCCEEEEEeCHH--HHHHHHHHHHHcCCC-EEEE
Confidence            4 4689999999863  345666665554333 4443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.06  E-value=0.00064  Score=64.73  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999998 899999987

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.03  E-value=0.0014  Score=63.28  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=36.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      +++.|+|+|-||.+++..|+..|. +|++++|++++++...
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            689999999999999999999996 9999999998877654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.03  E-value=0.0015  Score=66.93  Aligned_cols=90  Identities=20%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE-  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~-  222 (496)
                      ++|.|+|+|.+|..++..|...|++|+++|.|++.++.+.+           .|..          -+... ++   ++ 
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-----------~g~~----------vi~GDat~~~~L~~   63 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-----------FGMK----------VFYGDATRMDLLES   63 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-----------TTCC----------CEESCTTCHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-----------CCCe----------EEEcCCCCHHHHHh
Confidence            47999999999999999999999999999999998876431           2210          01111 11   21 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                       .+.+||+||.+++++. ....+...+..+.+.-.|++
T Consensus        64 agi~~A~~viv~~~~~~-~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           64 AGAAKAEVLINAIDDPQ-TNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             TTTTTCSEEEECCSSHH-HHHHHHHHHHHHCTTCEEEE
T ss_pred             cCCCccCEEEECCCChH-HHHHHHHHHHHhCCCCeEEE
Confidence             3688999999998653 33344444545443335555

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.97  E-value=0.00069  Score=62.62  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      |||.|.|+ |.+|+.++..|++.|++|++.+++++.+..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            47999998 999999999999999999999999887553

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.96  E-value=0.0012  Score=63.98  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=37.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i  190 (496)
                      ++|.|+|+|-+|.+++..|+..|. +|++++|++++++...+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            589999999999999999999999 6999999999877655443

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.94  E-value=0.00099  Score=68.13  Aligned_cols=70  Identities=19%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|+|||+|.||..++..+...|. +|+++|+++++++...+.          .|.           ......++ +.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~l~~~l~  226 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD----------LGG-----------EAVRFDELVDHLA  226 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH----------HTC-----------EECCGGGHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCC-----------ceecHHhHHHHhc
Confidence            589999999999999999999998 999999999876432211          121           00001222 3357


Q ss_pred             CCCEEEEeccCCh
Q 010966          226 DVDMVIEAIIENV  238 (496)
Q Consensus       226 ~aDlVIeav~e~~  238 (496)
                      ++|+||+|++...
T Consensus       227 ~aDvVi~at~~~~  239 (404)
T 1gpj_A          227 RSDVVVSATAAPH  239 (404)
T ss_dssp             TCSEEEECCSSSS
T ss_pred             CCCEEEEccCCCC
Confidence            8999999997654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.92  E-value=0.0026  Score=61.07  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=35.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      +++||.|.|+|.+|+.++..|+..|++|++.+++++..+.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            3579999999999999999999999999999999876543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.92  E-value=0.0042  Score=62.22  Aligned_cols=73  Identities=22%  Similarity=0.283  Sum_probs=52.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +..||+|||+|.||...+..+. . .+++|+ ++|++++.++...+.          .|.           .....++++
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~~   80 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI-----------EAKDYNDYH   80 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC-----------CCEEESSHH
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC-----------CCeeeCCHH
Confidence            3469999999999999999998 4 477765 899999887654321          110           123345665


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 010966          223 S-FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~  239 (496)
                      + ++  ++|+|+.|+|....
T Consensus        81 ~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           81 DLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             HHHHCTTCCEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEcCCcHHH
Confidence            4 33  68999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.91  E-value=0.0027  Score=66.01  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=37.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      -|||.|+|+|.+|..+|..|...||+|+++|.+++.++...
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            37999999999999999999999999999999999887643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.90  E-value=0.0059  Score=56.89  Aligned_cols=129  Identities=13%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||+|.+|..-+..|...|.+|++++.+... ++.           +.+.+.++         -+...-..+++.+
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~-----------l~~~~~i~---------~i~~~~~~~dL~~   91 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE-----------WEAKGQLR---------VKRKKVGEEDLLN   91 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH-----------HHHTTSCE---------EECSCCCGGGSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-----------HHHcCCcE---------EEECCCCHhHhCC
Confidence            58999999999999999999999999999976431 111           12233221         0111112356889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS  304 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~  304 (496)
                      +|+||-|. ++.++...+..    .+..+. ++...            ..|+.   ..|+.|.  ...+++.-|.+.+.+
T Consensus        92 adLVIaAT-~d~~~N~~I~~----~ak~gi-~VNvv------------D~p~~---~~f~~Paiv~rg~l~iaIST~G~s  150 (223)
T 3dfz_A           92 VFFIVVAT-NDQAVNKFVKQ----HIKNDQ-LVNMA------------SSFSD---GNIQIPAQFSRGRLSLAISTDGAS  150 (223)
T ss_dssp             CSEEEECC-CCTHHHHHHHH----HSCTTC-EEEC-----------------C---CSEECCEEEEETTEEEEEECTTSC
T ss_pred             CCEEEECC-CCHHHHHHHHH----HHhCCC-EEEEe------------CCccc---CeEEEeeEEEeCCEEEEEECCCCC
Confidence            99999775 55555544433    344333 33211            12221   2355564  346777777777889


Q ss_pred             HHHHHHHHHHHHH
Q 010966          305 PQVIVDLLDIGKK  317 (496)
Q Consensus       305 ~e~~~~~~~l~~~  317 (496)
                      |.....+++-++.
T Consensus       151 P~la~~iR~~ie~  163 (223)
T 3dfz_A          151 PLLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9888888877765

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.89  E-value=0.0036  Score=62.55  Aligned_cols=72  Identities=18%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             cceEEEEEeCChhhH-HHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGS-GIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +..||+|||+|.||. .++..+... +++|+ ++|++++.++...++          .|             +...++++
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~   82 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------FG-------------GEPVEGYP   82 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------HC-------------SEEEESHH
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CCCcCCHH
Confidence            346999999999998 788888876 77865 889999876654321          11             12235555


Q ss_pred             c-cc--CCCEEEEeccCChHH
Q 010966          223 S-FK--DVDMVIEAIIENVSL  240 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~~  240 (496)
                      + ++  ++|+|+.|+|.....
T Consensus        83 ~ll~~~~~D~V~i~tp~~~h~  103 (350)
T 3rc1_A           83 ALLERDDVDAVYVPLPAVLHA  103 (350)
T ss_dssp             HHHTCTTCSEEEECCCGGGHH
T ss_pred             HHhcCCCCCEEEECCCcHHHH
Confidence            4 33  689999999987653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.88  E-value=0.0013  Score=66.30  Aligned_cols=69  Identities=30%  Similarity=0.322  Sum_probs=49.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---c-
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y-  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~-  221 (496)
                      -|||.|||+|.+|+.+|..|+. .++|++.|++.+.+++..+.             .         ..+... +|   + 
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~-------------~---------~~~~~d~~d~~~l~   72 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF-------------A---------TPLKVDASNFDKLV   72 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT-------------S---------EEEECCTTCHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc-------------C---------CcEEEecCCHHHHH
Confidence            3589999999999999998864 58999999999887764210             0         111111 12   2 


Q ss_pred             ccccCCCEEEEeccCCh
Q 010966          222 ESFKDVDMVIEAIIENV  238 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~  238 (496)
                      +.++++|+||.|+|...
T Consensus        73 ~~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           73 EVMKEFELVIGALPGFL   89 (365)
T ss_dssp             HHHTTCSEEEECCCGGG
T ss_pred             HHHhCCCEEEEecCCcc
Confidence            23689999999998654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.88  E-value=0.0048  Score=61.86  Aligned_cols=69  Identities=29%  Similarity=0.276  Sum_probs=50.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      ..||+|||+|.||...+..+... +++|+ ++|+++++++.+.           +.|             +...+++++ 
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~g-------------~~~~~~~~~l   60 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QKG-------------LKIYESYEAV   60 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TTT-------------CCBCSCHHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hcC-------------CceeCCHHHH
Confidence            36899999999999999988876 67765 7799998764321           112             223456654 


Q ss_pred             cc--CCCEEEEeccCChH
Q 010966          224 FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~  239 (496)
                      ++  ++|+|+.|+|....
T Consensus        61 l~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A           61 LADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             HHCTTCCEEEECSCGGGH
T ss_pred             hcCCCCCEEEEcCCcHHH
Confidence            33  79999999998764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.83  E-value=0.0031  Score=65.41  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=59.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|+|+|.+|.++|..|+..|.+|+++|++++.+..+..           .|             .. ..+. +.+..
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~d-v~~lee~~~~  320 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQ-VLTLEDVVSE  320 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CE-ECCGGGTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------Cc-cCCHHHHHHh
Confidence            58999999999999999999999999999999987654321           12             11 1233 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      +|+|+++.....-+.    .+..+.++++.+|+...
T Consensus       321 aDvVi~atG~~~vl~----~e~l~~mk~gaiVvNaG  352 (488)
T 3ond_A          321 ADIFVTTTGNKDIIM----LDHMKKMKNNAIVCNIG  352 (488)
T ss_dssp             CSEEEECSSCSCSBC----HHHHTTSCTTEEEEESS
T ss_pred             cCEEEeCCCChhhhh----HHHHHhcCCCeEEEEcC
Confidence            999998864322122    22344578888876543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.83  E-value=0.0035  Score=54.28  Aligned_cols=101  Identities=15%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++|+|||+    |.||..++..|.+.|++  +|++|+.. +.                          ...+....++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            48999999    79999999999999997  56666642 10                          012333445555


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhc-CCCeeee
Q 010966          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVG  282 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~-~~~r~ig  282 (496)
                      + ..+|++|.++|..  .-.+++.++.+.- ...++..  ++..-.++.+... +.-|++|
T Consensus        74 l~~~vDlvvi~vp~~--~~~~vv~~~~~~g-i~~i~~~--~g~~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           74 IPDKIEVVDLFVKPK--LTMEYVEQAIKKG-AKVVWFQ--YNTYNREASKKADEAGLIIVA  129 (144)
T ss_dssp             CSSCCSEEEECSCHH--HHHHHHHHHHHHT-CSEEEEC--TTCCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEeCHH--HHHHHHHHHHHcC-CCEEEEC--CCchHHHHHHHHHHcCCEEEc
Confidence            4 4689999999863  4456666655542 3345433  2233344444332 2335554

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.82  E-value=0.0019  Score=63.81  Aligned_cols=92  Identities=15%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      ..||+|||+|.||..++..+.+. +.+ |.++|++++.  ..              +          . .+..+++++++
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~--------------~----------~-gv~~~~d~~~l   55 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT--------------K----------T-PVFDVADVDKH   55 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS--------------S----------S-CEEEGGGGGGT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh--------------c----------C-CCceeCCHHHH
Confidence            35899999999999999998876 566 4688988643  10              0          0 12334555543


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhCCCC-eeEeccCCcccHHHH
Q 010966          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLI  270 (496)
Q Consensus       225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~il~sntS~~~~~~l  270 (496)
                       .++|+||+|+|.....     ..+...+..+ .+|++.+.+.++.++
T Consensus        56 l~~~DvViiatp~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           56 ADDVDVLFLCMGSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTTCSEEEECSCTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             hcCCCEEEEcCCcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHH
Confidence             6899999999876532     2222333333 356665555666555

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.81  E-value=0.0018  Score=62.76  Aligned_cols=38  Identities=13%  Similarity=0.074  Sum_probs=35.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~  185 (496)
                      ++|.|||+|-+|++++..|...|. +|++++|++++++.
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~  161 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE  161 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            589999999999999999999998 89999999987665

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.80  E-value=0.017  Score=59.27  Aligned_cols=150  Identities=14%  Similarity=0.181  Sum_probs=83.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---C----CHHHHHhh--hccee
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGK---M----TQEKFEKT--ISLLT  216 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~----~~~~~~~~--~~~i~  216 (496)
                      .||+|||+|.||..++..+... |.+ |.++|+++++++...++.   +      |.   +    +..+....  .....
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~---y------G~~~~~~~~~~~~~i~~a~~~g~~~   94 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA---Y------GDEENAREATTESAMTRAIEAGKIA   94 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH---H------SSSTTEEECSSHHHHHHHHHTTCEE
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---c------CCccccccccchhhhhhhhccCCce
Confidence            5899999999999999887654 555 677899998877654321   0      10   0    11111111  12344


Q ss_pred             cccCccc-cc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeeccccCcCC
Q 010966          217 GVLDYES-FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAH  290 (496)
Q Consensus       217 ~~~~~~~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~~P~~  290 (496)
                      .++|+++ ++  +.|+|++|+|....-.......++.   ...+++.|. .+...   +|.+.....    |..      
T Consensus        95 v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~A---GKHVv~~nk-~l~~~eg~eL~~~A~e~----Gvv------  160 (446)
T 3upl_A           95 VTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRN---GKHLVMMNV-EADVTIGPYLKAQADKQ----GVI------  160 (446)
T ss_dssp             EESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHT---TCEEEECCH-HHHHHHHHHHHHHHHHH----TCC------
T ss_pred             EECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHc---CCcEEecCc-ccCHHHHHHHHHHHHHh----CCe------
Confidence            5677765 33  6899999997532112222222322   233443332 22222   222222111    111      


Q ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                            +.......+.....+.++.+.+|..++.++
T Consensus       161 ------l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 ------YSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ------EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ------eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence                  112222346777888899999999999987

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.78  E-value=0.0047  Score=61.92  Aligned_cols=71  Identities=14%  Similarity=0.110  Sum_probs=50.2

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ..||+|||+|.||.. ++..+... +.+|+ ++|++++.++...+                      .+......+++++
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~~~~~~~~~~~~   62 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR----------------------FISDIPVLDNVPA   62 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG----------------------TSCSCCEESSHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH----------------------hcCCCcccCCHHH
Confidence            469999999999985 88888775 67866 88999987654321                      1122234566655


Q ss_pred             -cc--CCCEEEEeccCChH
Q 010966          224 -FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 -~~--~aDlVIeav~e~~~  239 (496)
                       ++  +.|+|+.|+|....
T Consensus        63 ll~~~~vD~V~i~tp~~~H   81 (359)
T 3m2t_A           63 MLNQVPLDAVVMAGPPQLH   81 (359)
T ss_dssp             HHHHSCCSEEEECSCHHHH
T ss_pred             HhcCCCCCEEEEcCCcHHH
Confidence             33  56999999996653

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.78  E-value=0.0058  Score=61.24  Aligned_cols=74  Identities=12%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      +.||+|||+|.||..++..+... ++++ .++|++++.++...+          +.|. .        ......+++++ 
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~----------~~~~-~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-C--------CCCeeeCCHHHH
Confidence            46999999999999999988875 5665 589999987655321          1121 0        01223456654 


Q ss_pred             cc--CCCEEEEeccCChH
Q 010966          224 FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~  239 (496)
                      ++  ++|+|+.|+|....
T Consensus        67 l~~~~~D~V~i~tp~~~h   84 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLH   84 (362)
T ss_dssp             HHCTTCCEEEECCCGGGH
T ss_pred             hcCCCCCEEEEcCChHHH
Confidence            33  69999999997654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.76  E-value=0.0035  Score=60.86  Aligned_cols=76  Identities=21%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|.|+|+|.||.++|..|+..| +|+++|+++++++...+.+....      +. .. ..     .+..++-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~-~~-~~-----~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NK-KF-GE-----EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TC-CH-HH-----HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------cc-cc-ce-----eEEEeeHHHhhCCC
Confidence            58999999999999999999999 99999999987766544332110      00 00 00     01111113456789


Q ss_pred             CEEEEeccCC
Q 010966          228 DMVIEAIIEN  237 (496)
Q Consensus       228 DlVIeav~e~  237 (496)
                      |+||.+++..
T Consensus       195 DilVn~ag~~  204 (287)
T 1nvt_A          195 DIIINATPIG  204 (287)
T ss_dssp             CEEEECSCTT
T ss_pred             CEEEECCCCC
Confidence            9999998743

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.74  E-value=0.0011  Score=66.57  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~  207 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE  207 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            7999999999999999999999999999999998877653

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.71  E-value=0.0047  Score=60.53  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      ..||+|||+|.||..++..+.+. +++|+ ++|++++.++.              .|..           ....+++.+.
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~~-----------~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQP-----------FRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCTT-----------SCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCCC-----------cCCHHHHHhC
Confidence            35999999999999999998874 67877 79999875432              1210           1112333334


Q ss_pred             cCCCEEEEeccCChH
Q 010966          225 KDVDMVIEAIIENVS  239 (496)
Q Consensus       225 ~~aDlVIeav~e~~~  239 (496)
                      .++|+||+|+|....
T Consensus        64 ~~~DvViiatp~~~h   78 (304)
T 3bio_A           64 ESVDVALVCSPSREV   78 (304)
T ss_dssp             SSCCEEEECSCHHHH
T ss_pred             CCCCEEEECCCchhh
Confidence            789999999986643

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.70  E-value=0.00061  Score=65.68  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             cceEEEEEe-CChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILG-GGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIG-aG~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .++||+|+| +|.||+.++..+... +++++. +|++.+... +.           ..+.+.     .....+..+++++
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~-G~-----------d~gel~-----g~~~gv~v~~dl~   68 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL-GQ-----------DAGAFL-----GKQTGVALTDDIE   68 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT-TS-----------BTTTTT-----TCCCSCBCBCCHH
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc-cc-----------cHHHHh-----CCCCCceecCCHH
Confidence            468999999 799999999988765 677665 688753210 00           001110     0001233455665


Q ss_pred             c-ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          223 S-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       223 ~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      + +.++|+||++.+..  .-.+....   .+..+.-+++.|++++.++
T Consensus        69 ~ll~~~DVVIDfT~p~--a~~~~~~~---al~~G~~vVigTTG~s~~~  111 (272)
T 4f3y_A           69 RVCAEADYLIDFTLPE--GTLVHLDA---ALRHDVKLVIGTTGFSEPQ  111 (272)
T ss_dssp             HHHHHCSEEEECSCHH--HHHHHHHH---HHHHTCEEEECCCCCCHHH
T ss_pred             HHhcCCCEEEEcCCHH--HHHHHHHH---HHHcCCCEEEECCCCCHHH
Confidence            4 57899999987532  22223332   3333444444555666543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.68  E-value=0.0035  Score=61.70  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~  188 (496)
                      +++.|+|+|-+|.+++..|+..|. +|++++|+   .++++...+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~  199 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE  199 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence            589999999999999999999998 89999999   777665543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.67  E-value=0.002  Score=59.23  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=34.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      |||.|+|+ |.+|+.++..|+..|++|++++++++.++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            48999996 999999999999999999999999876543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.66  E-value=0.011  Score=58.54  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=50.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +.||+|||+|.||...+..+...+   ++ |.++|+++++++...++          .|.            -...++++
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------~~~------------~~~~~~~~   59 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------HDI------------PKAYGSYE   59 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------HTC------------SCEESSHH
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------cCC------------CcccCCHH
Confidence            469999999999999999887654   23 66789999887654321          111            12345665


Q ss_pred             c-cc--CCCEEEEeccCChHH
Q 010966          223 S-FK--DVDMVIEAIIENVSL  240 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~~  240 (496)
                      + ++  ++|+|+.|+|.....
T Consensus        60 ~ll~~~~vD~V~i~tp~~~H~   80 (334)
T 3ohs_X           60 ELAKDPNVEVAYVGTQHPQHK   80 (334)
T ss_dssp             HHHHCTTCCEEEECCCGGGHH
T ss_pred             HHhcCCCCCEEEECCCcHHHH
Confidence            4 33  699999999987653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.65  E-value=0.0031  Score=61.92  Aligned_cols=41  Identities=17%  Similarity=0.129  Sum_probs=35.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~  188 (496)
                      +++.|+|+|-+|.+++..|+..|. +|++++|+   .++++...+
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~  193 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK  193 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHH
Confidence            589999999999999999999998 89999999   666665443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.65  E-value=0.0024  Score=63.24  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=48.6

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      .+.||+|||+|.||..++..+... +.+| .++|++++.++...+           .           .+.....+++++
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~~   61 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-----------K-----------YHLPKAYDKLED   61 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------C-----------CCCSCEESCHHH
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------H-----------cCCCcccCCHHH
Confidence            356999999999999999988765 4554 478999876544211           1           011123456654


Q ss_pred             -cc--CCCEEEEeccCChH
Q 010966          224 -FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 -~~--~aDlVIeav~e~~~  239 (496)
                       +.  ++|+|+.|+|....
T Consensus        62 ll~~~~~D~V~i~tp~~~h   80 (329)
T 3evn_A           62 MLADESIDVIYVATINQDH   80 (329)
T ss_dssp             HHTCTTCCEEEECSCGGGH
T ss_pred             HhcCCCCCEEEECCCcHHH
Confidence             44  79999999997754

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.59  E-value=0.0046  Score=61.26  Aligned_cols=71  Identities=13%  Similarity=0.006  Sum_probs=50.3

Q ss_pred             ceEEEEEeCChhhH-HHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          147 VKKVAILGGGLMGS-GIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      ..||+|||+|.||. .++..+...|++| .++|+++++++...++          -            ......+++++ 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------~------------~~~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------F------------PSVPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------S------------TTCCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------c------------CCCcccCCHHHH
Confidence            45899999999996 6777777778985 6899999876653221          1            11223456654 


Q ss_pred             cc--CCCEEEEeccCChH
Q 010966          224 FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~~--~aDlVIeav~e~~~  239 (496)
                      ++  ++|+|+.|+|....
T Consensus        62 l~~~~~D~V~i~tp~~~h   79 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDR   79 (336)
T ss_dssp             HTCTTCCEEEECSCGGGH
T ss_pred             hhCCCCCEEEEeCChhhH
Confidence            33  68999999997764

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.56  E-value=0.0055  Score=61.03  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=51.0

Q ss_pred             ccceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          145 RRVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +.|.||||||+|.||.. .+..+... +.+|+ ++|+++++++...++          -|            .-...+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g------------~~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------FS------------VPHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------HT------------CSEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC------------CCeeeCCH
Confidence            45679999999999975 45566554 67765 789999987664321          11            11235666


Q ss_pred             cc-c--cCCCEEEEeccCChHH
Q 010966          222 ES-F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       222 ~~-~--~~aDlVIeav~e~~~~  240 (496)
                      ++ +  .+.|+|+.|+|.....
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGHH
T ss_pred             HHHhcCCCCCEEEEeCCCchhH
Confidence            65 3  4689999999987653

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.55  E-value=0.0076  Score=62.09  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             ccceEEEEEeCChhhH-HHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          145 RRVKKVAILGGGLMGS-GIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~-~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +...||+|||+|.||. .++..+... +++| .++|++++.++...+          +.|. ..       ..+...+++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~----------~~g~-~~-------~~~~~~~~~  142 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA----------EYGV-DP-------RKIYDYSNF  142 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH----------HTTC-CG-------GGEECSSSG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-Cc-------ccccccCCH
Confidence            3456999999999997 898888765 5664 689999987655321          1121 10       012234566


Q ss_pred             cc-cc--CCCEEEEeccCChH
Q 010966          222 ES-FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       222 ~~-~~--~aDlVIeav~e~~~  239 (496)
                      ++ ++  ++|+|+.|+|....
T Consensus       143 ~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A          143 DKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             GGGGGCTTCCEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEcCCchhH
Confidence            55 33  79999999997754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.44  E-value=0.0028  Score=58.53  Aligned_cols=39  Identities=18%  Similarity=0.328  Sum_probs=33.9

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHH-hCCCcEEEEeCCHH-HHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALI-LSNYPVILKEVNEK-FLEA  185 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la-~~G~~V~l~d~~~~-~~~~  185 (496)
                      |++|.|.|+ |.+|..++..|+ ..|++|++.+++++ .++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            445999995 999999999999 89999999999987 5543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.40  E-value=0.0019  Score=65.84  Aligned_cols=39  Identities=21%  Similarity=0.144  Sum_probs=35.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|+|||+|.+|..++..+...|.+|+++|++++.++..
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999876653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.40  E-value=0.012  Score=55.02  Aligned_cols=93  Identities=14%  Similarity=0.022  Sum_probs=59.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---c-
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y-  221 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~-  221 (496)
                      -++|.|+|+|.+|..++..|...|+ |+++|++++.++...            .|.          .-+... ++   + 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------------~~~----------~~i~gd~~~~~~l~   65 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR------------SGA----------NFVHGDPTRVSDLE   65 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------------TTC----------EEEESCTTCHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------------cCC----------eEEEcCCCCHHHHH
Confidence            3589999999999999999999999 999999998765431            110          011111 11   2 


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCC-eeEeccCCc
Q 010966          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTST  264 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~il~sntS~  264 (496)
                       ..++++|.||.+++.+. ....+ ....+.+.++ .|++-..+.
T Consensus        66 ~a~i~~ad~vi~~~~~d~-~n~~~-~~~a~~~~~~~~iia~~~~~  108 (234)
T 2aef_A           66 KANVRGARAVIVDLESDS-ETIHC-ILGIRKIDESVRIIAEAERY  108 (234)
T ss_dssp             HTTCTTCSEEEECCSCHH-HHHHH-HHHHHHHCSSSEEEEECSSG
T ss_pred             hcCcchhcEEEEcCCCcH-HHHHH-HHHHHHHCCCCeEEEEECCH
Confidence             13789999999998763 22222 2333334555 666644443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.37  E-value=0.0086  Score=60.11  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             cceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ++.||+|||+|.||.. .+..+... +++|+ ++|+++++++.             +.            ......++++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-------------DL------------PDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-------------HC------------TTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hC------------CCCcEECCHH
Confidence            3469999999999997 66666654 77764 88999976431             11            1123455665


Q ss_pred             c-cc--CCCEEEEeccCChHH
Q 010966          223 S-FK--DVDMVIEAIIENVSL  240 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~~  240 (496)
                      + ++  +.|+|+.|+|.....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H~   81 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATHA   81 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEeCChHHHH
Confidence            4 33  789999999987653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.31  E-value=0.006  Score=63.15  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      .++|.|+|+|.||+.++..|+..|++|+++|++++.++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            468999999999999999999999999999999877654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.30  E-value=0.0036  Score=63.97  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=36.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~  188 (496)
                      |+||+|||+|.+|+.++..|++.|   .+|++.|+++++++...+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~   45 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQ   45 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHH
Confidence            469999999999999999999998   399999999998776544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.30  E-value=0.012  Score=58.02  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~  180 (496)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            68999997 9999999999999996       899999975

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=96.28  E-value=0.033  Score=52.83  Aligned_cols=106  Identities=17%  Similarity=0.146  Sum_probs=73.9

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHh---hhcCC-CeeeeccccCcCCCCC
Q 010966          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSK-DRIVGAHFFSPAHVMP  293 (496)
Q Consensus       218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~---~~~~~-~r~ig~hf~~P~~~~~  293 (496)
                      ++|.++++++|++|.=.|..- ..-.+.+++.+++++++||+ ||-++|+-.+..   .+.+. -.+..+||-.= +.+.
T Consensus       133 sDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaV-Pgt~  209 (358)
T 2b0j_A          133 SDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCV-PEMK  209 (358)
T ss_dssp             SCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSC-TTTC
T ss_pred             cchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCC-CCCC
Confidence            445788999999999998643 23478899999999999885 566666654444   44433 34445555431 1222


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      .-....-.-.++|.++...++.+..|+.++.+.
T Consensus       210 Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP  242 (358)
T 2b0j_A          210 GQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP  242 (358)
T ss_dssp             CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence            223344445689999999999999999999885

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.28  E-value=0.005  Score=59.79  Aligned_cols=33  Identities=30%  Similarity=0.327  Sum_probs=30.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|-.|+.++..|+++|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999875

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.23  E-value=0.0027  Score=64.34  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=35.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|+|||+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999999999999998776553

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.23  E-value=0.0055  Score=58.30  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            489999999999999999999998 899998763

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.22  E-value=0.0083  Score=60.07  Aligned_cols=69  Identities=22%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +.||+|||+|.||.. .+..+... +++| .++|++++++..             +.            ......+++++
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~   59 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------DF------------PDAEVVHELEE   59 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------HC------------TTSEEESSTHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hC------------CCCceECCHHH
Confidence            469999999999997 56666554 6776 588999865221             11            11234566654


Q ss_pred             -cc--CCCEEEEeccCChHH
Q 010966          224 -FK--DVDMVIEAIIENVSL  240 (496)
Q Consensus       224 -~~--~aDlVIeav~e~~~~  240 (496)
                       ++  +.|+|+.|+|.....
T Consensus        60 ll~~~~vD~V~i~tp~~~H~   79 (358)
T 3gdo_A           60 ITNDPAIELVIVTTPSGLHY   79 (358)
T ss_dssp             HHTCTTCCEEEECSCTTTHH
T ss_pred             HhcCCCCCEEEEcCCcHHHH
Confidence             34  789999999987653

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.20  E-value=0.0022  Score=61.83  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHh-CCCcEE-EEeCCHH
Q 010966          147 VKKVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~  181 (496)
                      .+||+|+|+ |.||+.++..+.. .|++|+ ++|++++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~   42 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS   42 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence            469999998 9999999998774 588876 7888764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.18  E-value=0.019  Score=53.43  Aligned_cols=39  Identities=15%  Similarity=0.090  Sum_probs=35.2

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      -++|.|.|+ |.+|..++..|+..|++|++.+++++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            368999998 999999999999999999999999887654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0092  Score=62.01  Aligned_cols=41  Identities=20%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG  186 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~  186 (496)
                      .+++|.|+|+|.+|+.++..|++. |++|+++|+++++++..
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            457899999999999999999998 78999999999876653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.98  E-value=0.015  Score=57.47  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=32.1

Q ss_pred             cceEEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCH
Q 010966          146 RVKKVAILGGGLMGSG-IATALILSNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~-iA~~la~~G~~V~l~d~~~  180 (496)
                      .++||.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999996 9999999999999999875

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.96  E-value=0.043  Score=54.35  Aligned_cols=72  Identities=18%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             cceEEEEEeCC-hhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          146 RVKKVAILGGG-LMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       146 ~~~kV~VIGaG-~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      ...||+|||+| .||...+..+...  +++| .++|+++++++...++          -|            .....+|+
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~~------------~~~~~~~~   74 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VG------------NPAVFDSY   74 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HS------------SCEEESCH
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------hC------------CCcccCCH
Confidence            44699999999 8999999988876  4665 6899999887654321          11            11345666


Q ss_pred             cc-c--cCCCEEEEeccCChH
Q 010966          222 ES-F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       222 ~~-~--~~aDlVIeav~e~~~  239 (496)
                      ++ +  .+.|+|+.|+|....
T Consensus        75 ~~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           75 EELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             HHHHHSSCCSEEEECCCGGGH
T ss_pred             HHHhcCCCCCEEEEeCCchHH
Confidence            54 3  368999999997654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.95  E-value=0.0046  Score=57.12  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      |++|.|.|+ |.+|+.++..|+..|++|++.+++++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            579999996 9999999999999999999999997653

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.94  E-value=0.056  Score=55.65  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc----
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL----  219 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----  219 (496)
                      ...||+|||+|.||...+..+... |++| .++|+++++++...+.+.       +.|.          ......+    
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~   81 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGND   81 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTT
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCC
Confidence            346999999999999999888774 6775 588999998776543211       1121          0112233    


Q ss_pred             Cccc-cc--CCCEEEEeccCChH
Q 010966          220 DYES-FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       220 ~~~~-~~--~aDlVIeav~e~~~  239 (496)
                      ++++ ++  +.|+|+.|+|....
T Consensus        82 ~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           82 DYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             THHHHTTCTTCCEEEECCCGGGH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            5554 43  68999999997754

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.94  E-value=0.018  Score=54.44  Aligned_cols=32  Identities=19%  Similarity=0.405  Sum_probs=26.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCC
Q 010966          148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVN  179 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~-l~d~~  179 (496)
                      +||+|+|+ |.||+.++..+... |++|+ ++|++
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            48999997 99999999998765 89876 55654

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.94  E-value=0.034  Score=56.19  Aligned_cols=69  Identities=17%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGG-LMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      .||+|||+| .||...+..+... +++|+ ++|+++++++...+.          .|             +...+++++ 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------YG-------------IPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------HT-------------CCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------cC-------------CCeECCHHHH
Confidence            689999999 9999999888775 56654 889999877654321          01             223456654 


Q ss_pred             c--cCCCEEEEeccCChH
Q 010966          224 F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~--~~aDlVIeav~e~~~  239 (496)
                      +  .++|+|+.|+|....
T Consensus        60 l~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             HHHSCCSEEEECSCGGGH
T ss_pred             HcCCCCCEEEEcCCcHHH
Confidence            3  369999999997754

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.93  E-value=0.023  Score=56.93  Aligned_cols=70  Identities=10%  Similarity=0.107  Sum_probs=49.5

Q ss_pred             eEEEEEeCChhhH-HHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          148 KKVAILGGGLMGS-GIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~-~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      .||+|||+|.+|. .++..+...|++ |.++|+++++++...+.          -|            .....+++++ +
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~~------------~~~~~~~~~~ll   84 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------YA------------DARRIATAEEIL   84 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------SS------------SCCEESCHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------cC------------CCcccCCHHHHh
Confidence            5899999999995 567777778888 56889999887664321          11            1233566655 3


Q ss_pred             --cCCCEEEEeccCChH
Q 010966          225 --KDVDMVIEAIIENVS  239 (496)
Q Consensus       225 --~~aDlVIeav~e~~~  239 (496)
                        .+.|+|+.|+|....
T Consensus        85 ~~~~vD~V~I~tp~~~H  101 (361)
T 3u3x_A           85 EDENIGLIVSAAVSSER  101 (361)
T ss_dssp             TCTTCCEEEECCCHHHH
T ss_pred             cCCCCCEEEEeCChHHH
Confidence              358999999997654

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.81  E-value=0.023  Score=57.73  Aligned_cols=74  Identities=19%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             ceEEEEEeCCh---hhHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      ..||+|||+|.   ||...+..+...+ ++|+  ++|+++++++...++          .| +..         ....+|
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g-~~~---------~~~~~~   71 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LG-VDS---------ERCYAD   71 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TT-CCG---------GGBCSS
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hC-CCc---------ceeeCC
Confidence            46999999999   9999988887765 6776  579999887664321          12 110         123456


Q ss_pred             cccc-c-------CCCEEEEeccCChHH
Q 010966          221 YESF-K-------DVDMVIEAIIENVSL  240 (496)
Q Consensus       221 ~~~~-~-------~aDlVIeav~e~~~~  240 (496)
                      ++++ +       +.|+|+.|+|.....
T Consensus        72 ~~~ll~~~~~~~~~vD~V~i~tp~~~H~   99 (398)
T 3dty_A           72 YLSMFEQEARRADGIQAVSIATPNGTHY   99 (398)
T ss_dssp             HHHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred             HHHHHhcccccCCCCCEEEECCCcHHHH
Confidence            6543 2       499999999987653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.79  E-value=0.0078  Score=58.32  Aligned_cols=74  Identities=18%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +++.|||.|. +|..+|..|...|.+|++.++....++.                                   .+.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            5899999865 8999999999999999999974332220                                   022568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||.+++...-++.       ..+++++++++..+
T Consensus       211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  240 (300)
T 4a26_A          211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVGT  240 (300)
T ss_dssp             CSEEEECSCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCcH-------HhcCCCcEEEEEec
Confidence            9999999975322222       34688888876543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.77  E-value=0.0066  Score=56.72  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=34.2

Q ss_pred             cccceEEEEEeC-ChhhHHHHHHHHhCC-CcEEEEeCCHHHH
Q 010966          144 PRRVKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFL  183 (496)
Q Consensus       144 ~~~~~kV~VIGa-G~mG~~iA~~la~~G-~~V~l~d~~~~~~  183 (496)
                      +++|++|.|.|+ |.+|..++..|+..| ++|++++++++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            345788999995 999999999999999 8999999998754

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.74  E-value=0.052  Score=54.01  Aligned_cols=69  Identities=16%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ..||+|||+|.||.. .+..+... +++|+ ++|+++++++.             +.            ......+++++
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHH
Confidence            468999999999997 67777665 67765 88999876431             01            11234556654


Q ss_pred             -c--cCCCEEEEeccCChHH
Q 010966          224 -F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       224 -~--~~aDlVIeav~e~~~~  240 (496)
                       +  .+.|+|+.|+|.....
T Consensus        62 ll~~~~vD~V~i~tp~~~H~   81 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTHF   81 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTHH
T ss_pred             HhcCCCCCEEEEeCChHHHH
Confidence             3  3599999999987653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.71  E-value=0.066  Score=51.94  Aligned_cols=95  Identities=14%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCcccc--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF--  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--  224 (496)
                      .+|..||+|..|.+........|.+|+.+|++++.++.+++.+.+       .|.          +++++. .|...+  
T Consensus       124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~-------~gl----------~~v~~v~gDa~~l~d  186 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG-------LGV----------DGVNVITGDETVIDG  186 (298)
T ss_dssp             CEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH-------HTC----------CSEEEEESCGGGGGG
T ss_pred             CEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh-------cCC----------CCeEEEECchhhCCC
Confidence            589999999976443322223589999999999999988765432       121          223221 122112  


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ...|+|+.+..  ..-+..+++++...++|+..++..
T Consensus       187 ~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          187 LEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             CCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            46799997653  234678999999999988766644

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=95.70  E-value=0.0059  Score=60.80  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             ceEEEEEeCChhhHHHHHH-H-Hh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATA-L-IL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~-l-a~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      +.||+|||+|.||..+... + .. .+++|+ ++|++++..+...                       ....+...++++
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------------------~~~~~~~~~~~~   58 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------------------IYSHIHFTSDLD   58 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------------------GGTTCEEESCTH
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------------------hcCCCceECCHH
Confidence            4699999999999974433 3 32 367776 8999886542110                       011233456665


Q ss_pred             c-cc--CCCEEEEeccCChHH
Q 010966          223 S-FK--DVDMVIEAIIENVSL  240 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~~  240 (496)
                      + ++  ++|+|+.|+|.....
T Consensus        59 ~ll~~~~~D~V~i~tp~~~h~   79 (345)
T 3f4l_A           59 EVLNDPDVKLVVVCTHADSHF   79 (345)
T ss_dssp             HHHTCTTEEEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEcCChHHHH
Confidence            5 34  489999999987643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.70  E-value=0.0057  Score=58.53  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +++.|||.| .+|..+|..|...|.+|++.++....++                                     +.+++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~  193 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS  193 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence            589999987 5899999999999999999986422211                                     23568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||-+++...-++.       ..+++++++++..+
T Consensus       194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  223 (276)
T 3ngx_A          194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGI  223 (276)
T ss_dssp             SSEEEECSSCTTCBCG-------GGCCTTCEEEECCC
T ss_pred             CCEEEECCCCCccccH-------hhccCCcEEEEecc
Confidence            9999999975322322       34688888876544

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.66  E-value=0.0065  Score=56.23  Aligned_cols=32  Identities=31%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999764

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.65  E-value=0.062  Score=53.36  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=57.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhh-hcceecccCcc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKT-ISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~-~~~i~~~~~~~  222 (496)
                      |.||+|+|+|.+|..+++.+..+ +++|+ +.|.+++......+.     +...-.|.+ ........ -+.+....+.+
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchH
Confidence            46999999999999999998876 57755 456665554433221     000001221 11111011 11222222332


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHH-HhhCCCCeeEeccCC
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTS  263 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS  263 (496)
                       .+.++|+|++|.+.....     +.. ..++..++.++++.+
T Consensus        77 ~~~~~vDiV~eatg~~~s~-----~~a~~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIGK-----QNLENIYKPHKVKAILQGG  114 (343)
T ss_dssp             GTGGGCSEEEECCCTTHHH-----HHHHHTTTTTTCEEEECTT
T ss_pred             HhccCCCEEEECCCccccH-----HHHHHHHHHCCCEEEECCC
Confidence             346899999999866421     122 355666665555443

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.64  E-value=0.022  Score=56.93  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            489999999999999999999998 899999863

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.59  E-value=0.016  Score=55.94  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |||.|.|+ |.+|+.++..|..+||+|+...|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            68999998 99999999999999999999998764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.59  E-value=0.012  Score=57.10  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=53.3

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      ++|.|||.|. +|..+|..|...|..|++.+....                                      ++ +.++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~~~  207 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------------------------------HLDEEVN  207 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------SHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcc--------------------------------------cHHHHhc
Confidence            5899999995 799999999999999999974422                                      22 3367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +||+||-|++..--++.       ..++++++++....
T Consensus       208 ~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  238 (301)
T 1a4i_A          208 KGDILVVATGQPEMVKG-------EWIKPGAIVIDCGI  238 (301)
T ss_dssp             TCSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             cCCEEEECCCCcccCCH-------HHcCCCcEEEEccC
Confidence            89999999975422332       23578898876544

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.57  E-value=0.014  Score=57.26  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=58.5

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee-c--c--cCc
Q 010966          148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-G--V--LDY  221 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~--~--~~~  221 (496)
                      ++|.|||+|.| |..+|..|+..|.+|++.|++..++..-             ...+.     ......+ .  +  .++
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~r-------------a~~la-----~~~~~~t~~~~t~~~~L  239 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR-------------GESLK-----LNKHHVEDLGEYSEDLL  239 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES-------------CCCSS-----CCCCEEEEEEECCHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhH-------------HHHHh-----hhcccccccccccHhHH
Confidence            69999999976 9999999999999999999984321110             00000     0000000 0  1  344


Q ss_pred             -ccccCCCEEEEeccCChH-HHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          222 -ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                       +.+.+||+||-|++...- ++.+       .+++++++++..+..
T Consensus       240 ~e~l~~ADIVIsAtg~p~~vI~~e-------~vk~GavVIDVgi~r  278 (320)
T 1edz_A          240 KKCSLDSDVVITGVPSENYKFPTE-------YIKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHCSEEEECCCCTTCCBCTT-------TSCTTEEEEECSSSC
T ss_pred             HHHhccCCEEEECCCCCcceeCHH-------HcCCCeEEEEcCCCc
Confidence             457899999999975322 2222       357888888766543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.54  E-value=0.0069  Score=60.97  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999999999998653

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.47  E-value=0.024  Score=56.68  Aligned_cols=69  Identities=12%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             cceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ++.||+|||+|.||.. .+..+... +++|+ ++|++++++..                         ........++++
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~~   58 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSFK   58 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCSH
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCHH
Confidence            3569999999999997 66666655 77764 78998764211                         011233456665


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 010966          223 S-FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       223 ~-~~--~aDlVIeav~e~~~  239 (496)
                      + ++  +.|+|+.|+|....
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A           59 ELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             HHHTCTTCCEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence            5 33  48999999998764

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.45  E-value=0.022  Score=57.98  Aligned_cols=71  Identities=18%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC---------CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec
Q 010966          148 KKVAILGGGLMGSGIATALILS---------NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~---------G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (496)
                      .||+|||+|.||..-+..+.+.         +.+ |.++|++++++++..++.          |            ....
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~----------~------------~~~~   84 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL----------G------------AEKA   84 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH----------T------------CSEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc----------C------------CCeE
Confidence            4899999999999888777654         335 457899999877654321          1            1123


Q ss_pred             ccCccc-c--cCCCEEEEeccCChHH
Q 010966          218 VLDYES-F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       218 ~~~~~~-~--~~aDlVIeav~e~~~~  240 (496)
                      .+|+++ +  .+.|+|+.|+|.....
T Consensus        85 y~d~~~ll~~~~vD~V~I~tp~~~H~  110 (412)
T 4gqa_A           85 YGDWRELVNDPQVDVVDITSPNHLHY  110 (412)
T ss_dssp             ESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             ECCHHHHhcCCCCCEEEECCCcHHHH
Confidence            556655 3  4689999999987653

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.42  E-value=0.038  Score=54.76  Aligned_cols=148  Identities=13%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCC-HHH---HHhhh----cce
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVILK-EV--NEKFLEAGIGRVRANLQSRVKKGKMT-QEK---FEKTI----SLL  215 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~---~~~~~----~~i  215 (496)
                      .||+|+|+|.+|+-+++.+..+ +++|+.+ |.  +++.+....+.     +  -..|.+. ..-   ....+    ..+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~y-----d--s~~g~~~~~~v~~~~~~~l~~~g~~i   76 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKY-----D--TVHGQWKHSDIKIKDSKTLLLGEKPV   76 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHC-----C--TTTCCCCSSCEEESSSSEEEETTEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcc-----c--ccCCCCCCCcEEeecCCeeEECCeEE
Confidence            5999999999999999998876 5665554 42  45544432210     0  0112221 000   00000    012


Q ss_pred             ecc--cCcccc----cCCCEEEEeccCChHHHHHHHHHHHhhCCCCe--eEeccCCcccHHHHHhhhcCCCeeeeccccC
Q 010966          216 TGV--LDYESF----KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERTYSKDRIVGAHFFS  287 (496)
Q Consensus       216 ~~~--~~~~~~----~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~--il~sntS~~~~~~la~~~~~~~r~ig~hf~~  287 (496)
                      ...  .+.+.+    .++|+||||.|.....  +.   ...++..++  +|+|..+.-          .|.-+.|+   |
T Consensus        77 ~v~~~~dp~~l~w~~~~vDvV~eaTg~~~~~--e~---a~~~l~aGak~VVIs~pa~d----------~p~~V~gv---N  138 (337)
T 3e5r_O           77 TVFGIRNPDEIPWAEAGAEYVVESTGVFTDK--EK---AAAHLKGGAKKVVISAPSKD----------APMFVCGV---N  138 (337)
T ss_dssp             EEECCSCGGGCCHHHHTCSEEEECSSSCCSH--HH---HTHHHHTTCSEEEESSCCSS----------SCBCCTTT---T
T ss_pred             EEEecCChHHccccccCCCEEEECCCchhhH--HH---HHHHHHcCCCEEEEecCCCC----------CCEEEecc---C
Confidence            212  144444    4899999999865432  22   233344455  888876621          12222232   2


Q ss_pred             cCCCCCeEEEEeCCCCCHHHHHH-HHHHHHHcCC
Q 010966          288 PAHVMPLLEIVRTNQTSPQVIVD-LLDIGKKIKK  320 (496)
Q Consensus       288 P~~~~~lveiv~~~~t~~e~~~~-~~~l~~~lGk  320 (496)
                      +-...+-..++..+.+..-.+.. +..+.+..|-
T Consensus       139 ~~~~~~~~~iIsnpsCtt~~la~~lkpL~~~~gI  172 (337)
T 3e5r_O          139 EDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGI  172 (337)
T ss_dssp             GGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCE
T ss_pred             HHHhCCCCcEEECCChHHHHHHHHHHHHHHhcCc
Confidence            22121112377777766655444 4444455564

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.41  E-value=0.024  Score=56.22  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-
Q 010966          146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-  219 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-  219 (496)
                      .|+||+|+|+ |.+|..+...|..+ .+++..+..+.   ..-+. ...+...+     .|.          ..+.... 
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~-~~~~~p~~-----~~~----------~~~~v~~~   66 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL-ISDLHPQL-----KGI----------VELPLQPM   66 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSB-HHHHCGGG-----TTT----------CCCBEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCc-hHHhCccc-----cCc----------cceeEecc
Confidence            4689999996 99999999999884 56777765443   21110 00000000     010          0112221 


Q ss_pred             -Ccccc-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          220 -DYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       220 -~~~~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                       +.+++ +++|+||+|+|...  -+++..++   +..++.++++++...+
T Consensus        67 ~~~~~~~~~~Dvvf~a~p~~~--s~~~~~~~---~~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           67 SDISEFSPGVDVVFLATAHEV--SHDLAPQF---LEAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SSGGGTCTTCSEEEECSCHHH--HHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred             CCHHHHhcCCCEEEECCChHH--HHHHHHHH---HHCCCEEEEcCCcccc
Confidence             34455 89999999998543  23333333   3567888899887643

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.33  E-value=0.016  Score=55.98  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcceecccCcc
Q 010966          147 VKKVAILG-GGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~  222 (496)
                      +.||+|+| +|.||+.++..+... +++++ ++|+++....                |. +..+.... ...+..++|++
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~----------------G~-d~gel~G~~~~gv~v~~dl~   83 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV----------------DK-DASILIGSDFLGVRITDDPE   83 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT----------------TS-BGGGGTTCSCCSCBCBSCHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc----------------cc-chHHhhccCcCCceeeCCHH
Confidence            46999999 899999999988754 77744 5587643210                10 00000000 01234456665


Q ss_pred             c-ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966          223 S-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (496)
Q Consensus       223 ~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~  268 (496)
                      + +.++|+||+..+.+     ..+..+...+..+.-+++.|++++.+
T Consensus        84 ~ll~~aDVvIDFT~p~-----a~~~~~~~~l~~Gv~vViGTTG~~~e  125 (288)
T 3ijp_A           84 SAFSNTEGILDFSQPQ-----ASVLYANYAAQKSLIHIIGTTGFSKT  125 (288)
T ss_dssp             HHTTSCSEEEECSCHH-----HHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred             HHhcCCCEEEEcCCHH-----HHHHHHHHHHHcCCCEEEECCCCCHH
Confidence            4 67899999987532     22333333344455555555666554

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.33  E-value=0.038  Score=56.43  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             ceEEEEEeCCh---hhHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966          147 VKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (496)
                      ..||+|||+|.   ||...+..+...+ ++|+  ++|+++++++...++          .|. ..         ....++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~~---------~~~~~~   96 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----------LGL-DP---------SRVYSD   96 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----------HTC-CG---------GGBCSC
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----------cCC-Cc---------ccccCC
Confidence            35899999999   9999888777665 6765  679999887664321          121 10         023455


Q ss_pred             ccc-cc-------CCCEEEEeccCChH
Q 010966          221 YES-FK-------DVDMVIEAIIENVS  239 (496)
Q Consensus       221 ~~~-~~-------~aDlVIeav~e~~~  239 (496)
                      +++ ++       +.|+|+.|+|....
T Consensus        97 ~~~ll~~~~~~~~~vD~V~I~tp~~~H  123 (417)
T 3v5n_A           97 FKEMAIREAKLKNGIEAVAIVTPNHVH  123 (417)
T ss_dssp             HHHHHHHHHHCTTCCSEEEECSCTTSH
T ss_pred             HHHHHhcccccCCCCcEEEECCCcHHH
Confidence            554 33       48999999998764

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.30  E-value=0.017  Score=55.61  Aligned_cols=72  Identities=21%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +++.|||.|. +|..+|..|+..|..|++.++....++                                     +.+++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~  203 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence            5899999876 699999999999999999985432111                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||-+++...-++.       +.+++++++++..+
T Consensus       204 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  233 (285)
T 3p2o_A          204 ADLIIVAAGCVNLLRS-------DMVKEGVIVVDVGI  233 (285)
T ss_dssp             CSEEEECSSCTTCBCG-------GGSCTTEEEEECCC
T ss_pred             CCEEEECCCCCCcCCH-------HHcCCCeEEEEecc
Confidence            9999999974322322       34688988876543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.19  E-value=0.028  Score=55.74  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=29.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLE  184 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~  184 (496)
                      |.||+|+|+|.||..+++.+..+ +++| .+.|++++...
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~   40 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA   40 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence            35899999999999999999874 5665 44577655443

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.16  E-value=0.0099  Score=57.22  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||.|. .|..+|..|...|..|++.+.....+.                                     +.+++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  202 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN  202 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence            6899999996 599999999999999999975442222                                     23567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||-+++..--++.       ..++++++++...+
T Consensus       203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi  232 (288)
T 1b0a_A          203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGI  232 (288)
T ss_dssp             CSEEEECSCCTTCBCT-------TTSCTTCEEEECCC
T ss_pred             CCEEEECCCCcCcCCH-------HHcCCCcEEEEccC
Confidence            9999999974422322       23578888876543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.11  E-value=0.016  Score=55.67  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +++.|||.|. +|..+|..|...|..|++.++....++                                     +.+++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  204 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  204 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence            5899999876 799999999999999999875421111                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ||+||-+++...-++.       +.+++++++++..+
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi  234 (285)
T 3l07_A          205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVGI  234 (285)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCcEEEEecc
Confidence            9999999974322322       34688888876543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.07  E-value=0.048  Score=56.80  Aligned_cols=73  Identities=19%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             ceEEEEEeC----ChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          147 VKKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       147 ~~kV~VIGa----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      ..||+|||+    |.||...+..+...  +++| .++|+++++++...+.          .|.          ......+
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~----------~~~~~~~   98 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGFD   98 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------CcceeeC
Confidence            468999999    99999999999875  6775 5899999877654321          121          0112345


Q ss_pred             Cccc-c--cCCCEEEEeccCChH
Q 010966          220 DYES-F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       220 ~~~~-~--~~aDlVIeav~e~~~  239 (496)
                      ++++ +  .++|+|+.|+|....
T Consensus        99 d~~ell~~~~vD~V~I~tp~~~H  121 (479)
T 2nvw_A           99 SLESFAQYKDIDMIVVSVKVPEH  121 (479)
T ss_dssp             CHHHHHHCTTCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            6654 3  379999999997654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.04  E-value=0.021  Score=56.78  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ...|.|||+|.+|.++|..|+++|++|+++|...
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            3589999999999999999999999999999753

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.02  E-value=0.052  Score=55.82  Aligned_cols=73  Identities=22%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             ceEEEEEeC----ChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          147 VKKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       147 ~~kV~VIGa----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      ..||+|||+    |.||...+..+...  +++| .++|+++++++...++          .|.          ..+...+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~----------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LKL----------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------CcceeeC
Confidence            358999999    99999999999876  6775 6899999876654321          121          0122345


Q ss_pred             Cccc-c--cCCCEEEEeccCChH
Q 010966          220 DYES-F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       220 ~~~~-~--~~aDlVIeav~e~~~  239 (496)
                      ++++ +  .++|+|+.|+|....
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~~H  102 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVASH  102 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEeCCcHHH
Confidence            6654 3  369999999997654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.99  E-value=0.064  Score=52.55  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh--CCCc-EEEEeCCHHH
Q 010966          147 VKKVAILGGGLMGSGIATALIL--SNYP-VILKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~--~G~~-V~l~d~~~~~  182 (496)
                      ..||+|||+|.||..++..+.+  .+.+ |.+.|+++++
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            3689999999999999999865  3554 5678999775

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=94.94  E-value=0.043  Score=54.50  Aligned_cols=81  Identities=19%  Similarity=0.236  Sum_probs=47.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhc--ceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTIS--LLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~--~i~~~~~~  221 (496)
                      .||+|+|+|.||..+++.+..+ +.+| .+.|++++.......          +.|.  .+..+....+.  .+....+.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~----------~~g~~~~~~~~~~~~~~~~~v~v~~~~   71 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH----------RRGIRIYVPQQSIKKFEESGIPVAGTV   71 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH----------HTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHH----------hcCcceecCcCHHHHhcccccccccCH
Confidence            5899999999999999998876 4564 466777654443221          1121  11101111111  12223344


Q ss_pred             cc-ccCCCEEEEeccCCh
Q 010966          222 ES-FKDVDMVIEAIIENV  238 (496)
Q Consensus       222 ~~-~~~aDlVIeav~e~~  238 (496)
                      ++ +.++|+||+|.|...
T Consensus        72 e~l~~~vDvV~~aTp~~~   89 (340)
T 1b7g_O           72 EDLIKTSDIVVDTTPNGV   89 (340)
T ss_dssp             HHHHHHCSEEEECCSTTH
T ss_pred             hHhhcCCCEEEECCCCch
Confidence            33 357999999998764

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.91  E-value=0.017  Score=55.35  Aligned_cols=71  Identities=20%  Similarity=0.252  Sum_probs=51.8

Q ss_pred             eEEEEEeCChh-hHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          148 KKVAILGGGLM-GSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       148 ~kV~VIGaG~m-G~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      +++.|||.|.| |..+|..|...  |..|++.+++...+.                                     +.+
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~  201 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT  201 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence            58999999976 99999999999  889999875432211                                     236


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ++||+||-|++..--++.+       .++++++++...
T Consensus       202 ~~ADIVI~Avg~p~~I~~~-------~vk~GavVIDVg  232 (281)
T 2c2x_A          202 RQADIVVAAVGVAHLLTAD-------MVRPGAAVIDVG  232 (281)
T ss_dssp             TTCSEEEECSCCTTCBCGG-------GSCTTCEEEECC
T ss_pred             hhCCEEEECCCCCcccCHH-------HcCCCcEEEEcc
Confidence            7899999999744223322       357788887644

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.91  E-value=0.042  Score=55.30  Aligned_cols=71  Identities=20%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             ceEEEEEe-CChhhHH-HH----HHHHhCC-CcE----------EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 010966          147 VKKVAILG-GGLMGSG-IA----TALILSN-YPV----------ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE  209 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~-iA----~~la~~G-~~V----------~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~  209 (496)
                      ..||+||| +|.||.. .+    ..+...+ ..+          .++|+++++++...++          .|        
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~----------~~--------   67 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR----------FN--------   67 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHH----------TT--------
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHH----------hC--------
Confidence            45899999 9999998 66    5555543 332          4999999887664321          12        


Q ss_pred             hhhcceecccCccc-c--cCCCEEEEeccCChH
Q 010966          210 KTISLLTGVLDYES-F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       210 ~~~~~i~~~~~~~~-~--~~aDlVIeav~e~~~  239 (496)
                          .....+|+++ +  .+.|+|+.|+|....
T Consensus        68 ----~~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           68 ----IARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             ----CCCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             ----CCcccCCHHHHhcCCCCCEEEECCCchHH
Confidence                1123456654 3  358999999997654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.90  E-value=0.014  Score=60.83  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=31.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |++|.|||+|.-|.+-|..|+++|++|++++.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            68999999999999999999999999999998764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.84  E-value=0.031  Score=55.26  Aligned_cols=66  Identities=18%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC---------CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee
Q 010966          147 VKKVAILGGGLMGSGIATALILSN---------YPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G---------~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (496)
                      ..||+|||+|.||+.++..+....         ++| .++|+++++.                ++ +.         ...
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~----------------~~-~~---------~~~   56 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP----------------RA-IP---------QEL   56 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC----------------CS-SC---------GGG
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh----------------hc-cC---------ccc
Confidence            358999999999999999987763         443 5678775421                11 11         012


Q ss_pred             cccCcccccCCCEEEEeccCCh
Q 010966          217 GVLDYESFKDVDMVIEAIIENV  238 (496)
Q Consensus       217 ~~~~~~~~~~aDlVIeav~e~~  238 (496)
                      .++|++++-+.|+|++|++...
T Consensus        57 ~~~d~~~ll~iDvVve~t~~~~   78 (332)
T 2ejw_A           57 LRAEPFDLLEADLVVEAMGGVE   78 (332)
T ss_dssp             EESSCCCCTTCSEEEECCCCSH
T ss_pred             ccCCHHHHhCCCEEEECCCCcH
Confidence            3556655339999999998653

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.82  E-value=0.019  Score=55.11  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +++.|||.|. +|..+|..|+..|..|++.+.....++                                     +.+++
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~  204 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR  204 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence            5899999865 899999999999999999875322111                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ||+||-+++...-++.       +.++++++++...
T Consensus       205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg  233 (286)
T 4a5o_A          205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVG  233 (286)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECC
T ss_pred             CCEEEECCCCCCCCCH-------HHcCCCeEEEEec
Confidence            9999999974322322       3468888887654

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=94.81  E-value=0.06  Score=53.29  Aligned_cols=82  Identities=16%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcC-----CCCHHHHHhh-hcceecc
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKT-ISLLTGV  218 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g-----~~~~~~~~~~-~~~i~~~  218 (496)
                      +.||+|+|+|.||..++..+... +.+| .+.|++++.+....++          .|     .+. ...... -+.+...
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~----------~g~~~~~~~~-~~v~~~~~~~~~v~   70 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE----------LGIPVYAASE-EFIPRFEKEGFEVA   70 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH----------TTCCEEESSG-GGHHHHHHHTCCCS
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHh----------cCcccccccc-ccceeccCCceEEc
Confidence            35999999999999999998876 4564 5568876665543221          11     000 000000 0112333


Q ss_pred             cCccc-ccCCCEEEEeccCChH
Q 010966          219 LDYES-FKDVDMVIEAIIENVS  239 (496)
Q Consensus       219 ~~~~~-~~~aDlVIeav~e~~~  239 (496)
                      .++++ +.++|+|++|.|....
T Consensus        71 ~d~~~l~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           71 GTLNDLLEKVDIIVDATPGGIG   92 (334)
T ss_dssp             CBHHHHHTTCSEEEECCSTTHH
T ss_pred             CcHHHhccCCCEEEECCCcccc
Confidence            45543 4689999999997753

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=94.81  E-value=0.013  Score=54.28  Aligned_cols=77  Identities=21%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             eEEEEEeCChhhHHHHHH--HHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGGLMGSGIATA--LILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~--la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      .+|+|||+|.+|..++..  +...|++ |-++|.+++......            .|           -.+...+++++ 
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i------------~g-----------v~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV------------GG-----------VPVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE------------TT-----------EEEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh------------cC-----------CeeechhhHHHH
Confidence            579999999999999994  4445776 557899987532200            00           01222344443 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHH
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLE  249 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~  249 (496)
                      +++.|+||.|+|...  .+++...+.
T Consensus       143 i~~~D~ViIAvPs~~--~~ei~~~l~  166 (215)
T 2vt3_A          143 VKDESVAILTVPAVA--AQSITDRLV  166 (215)
T ss_dssp             CSSCCEEEECSCHHH--HHHHHHHHH
T ss_pred             HHhCCEEEEecCchh--HHHHHHHHH
Confidence            444499999998653  234555443

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.80  E-value=0.13  Score=49.36  Aligned_cols=33  Identities=21%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ++|.|||+|..|..-+..|...|++|++++.+.
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            689999999999999999999999999999764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.74  E-value=0.13  Score=49.75  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +++|.|.|+ |.+|+.++..|+..|++|++.+++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG   37 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            468999995 99999999999999999999999843

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=94.72  E-value=0.05  Score=54.54  Aligned_cols=70  Identities=26%  Similarity=0.341  Sum_probs=45.3

Q ss_pred             EEEEEeCChhhHHHHHHHHh--------CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          149 KVAILGGGLMGSGIATALIL--------SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~--------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      ||+|||+|.||..-+..+..        .+.+ |.++|++++.++...++.          |            .-...+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------g------------~~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF----------G------------FEKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH----------T------------CSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh----------C------------CCeecC
Confidence            79999999999866554432        2445 567899998877643211          1            112456


Q ss_pred             Cccc-c--cCCCEEEEeccCChHH
Q 010966          220 DYES-F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       220 ~~~~-~--~~aDlVIeav~e~~~~  240 (496)
                      |+++ +  .+.|+|+.|+|.....
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHH
Confidence            6655 3  4689999999987654

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.72  E-value=0.085  Score=52.20  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eC--CHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVILK-EV--NEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~-d~--~~~~~~~  185 (496)
                      .||+|+|+|.+|+.+++.+..+ +.+|+.+ |.  +++.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~   45 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY   45 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            5999999999999999988764 5776544 53  5665544

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.64  E-value=0.13  Score=50.08  Aligned_cols=39  Identities=21%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      -++|.|.|+ |.+|+.++..|+..|++|++.+++++..+.
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   50 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN   50 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHH
Confidence            368999988 999999999999999999999999876554

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.62  E-value=0.055  Score=56.61  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=32.1

Q ss_pred             ccceEEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 010966          145 RRVKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK  181 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~-iA~~la~~G~~V~l~d~~~~  181 (496)
                      ..+++|.|||.|..|.+ +|..|...|++|+++|..+.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            34689999999999985 99999999999999998754

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.61  E-value=0.049  Score=54.21  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=55.0

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILG-GGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      ++||+|+| .|.+|+.+.+.|..+.. +++.+....+.-..    +...      .+.+.     .. ..+... +.+++
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~----~~~~------~~~~~-----g~-~~~~~~-~~~~~   66 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP----VHFV------HPNLR-----GR-TNLKFV-PPEKL   66 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB----GGGT------CGGGT-----TT-CCCBCB-CGGGC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch----hHHh------Cchhc-----Cc-cccccc-chhHh
Confidence            46999999 59999999999987654 76665443221000    0000      00000     00 111111 12235


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      .++|+||+|+|....  .++..   .++..++.++++++...
T Consensus        67 ~~vDvV~~a~g~~~s--~~~a~---~~~~aG~~VId~Sa~~r  103 (345)
T 2ozp_A           67 EPADILVLALPHGVF--AREFD---RYSALAPVLVDLSADFR  103 (345)
T ss_dssp             CCCSEEEECCCTTHH--HHTHH---HHHTTCSEEEECSSTTS
T ss_pred             cCCCEEEEcCCcHHH--HHHHH---HHHHCCCEEEEcCcccc
Confidence            789999999987643  23333   33456777888877543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.60  E-value=0.022  Score=56.18  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALIL---SNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~  180 (496)
                      |++|+|||+|..|.+.|..|++   .|++|+++|.++
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            4689999999999999999999   999999999864

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.55  E-value=0.031  Score=55.24  Aligned_cols=36  Identities=19%  Similarity=0.042  Sum_probs=33.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLE  184 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~  184 (496)
                      ++|.|+|+|..|..++..|...|+ |+++|.|++.++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            589999999999999999999999 999999998876

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=94.52  E-value=0.059  Score=50.93  Aligned_cols=75  Identities=16%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      -++|+++|+|.||..++..  . ++++ .+|+   ++                 .+.+          .+..++|+++ +
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k-----------------~gel----------gv~a~~d~d~ll   58 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI-----------------SKDI----------PGVVRLDEFQVP   58 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS-----------------CCCC----------SSSEECSSCCCC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc-----------------cccc----------CceeeCCHHHHh
Confidence            4799999999999999998  4 8875 5666   21                 1111          2234566655 4


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      .++|+|+||.+..     .+-+.+.+.+..+.=++
T Consensus        59 a~pD~VVe~A~~~-----av~e~~~~iL~aG~dvv   88 (253)
T 1j5p_A           59 SDVSTVVECASPE-----AVKEYSLQILKNPVNYI   88 (253)
T ss_dssp             TTCCEEEECSCHH-----HHHHHHHHHTTSSSEEE
T ss_pred             hCCCEEEECCCHH-----HHHHHHHHHHHCCCCEE
Confidence            7899999998532     22233666777665443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.52  E-value=0.03  Score=49.64  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |.+|.|||+|..|..+|..|++.|.+|+++|+++
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3589999999999999999999999999999875

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=94.52  E-value=0.024  Score=55.97  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=27.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC---------CCc-EEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILS---------NYP-VILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~---------G~~-V~l~d~~~~  181 (496)
                      |.||+|||+|.||+.++..+...         +++ |.+.|++++
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~   46 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSS   46 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCE
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChH
Confidence            57999999999999999998875         445 445576644

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.49  E-value=0.051  Score=45.49  Aligned_cols=81  Identities=17%  Similarity=0.042  Sum_probs=56.0

Q ss_pred             ceEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .++|+|||+    +..|..+...|...||+|+.++...+.+                             .......++.
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence            468999998    5689999999999999999988653221                             1133455666


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++.+.|+++.++|.+  .--++++++.+.- ...++.
T Consensus        55 dlp~vDlavi~~p~~--~v~~~v~e~~~~g-~k~v~~   88 (122)
T 3ff4_A           55 VIEGVDTVTLYINPQ--NQLSEYNYILSLK-PKRVIF   88 (122)
T ss_dssp             CCTTCCEEEECSCHH--HHGGGHHHHHHHC-CSEEEE
T ss_pred             HCCCCCEEEEEeCHH--HHHHHHHHHHhcC-CCEEEE
Confidence            665599999999854  3345666665542 335554

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.48  E-value=0.14  Score=50.89  Aligned_cols=150  Identities=12%  Similarity=0.100  Sum_probs=76.5

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhC-CCcEEEEeC---CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH---h-h-h--cc
Q 010966          146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEV---NEKFLEAGIGRVRANLQSRVKKGKMTQEKFE---K-T-I--SL  214 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~---~-~-~--~~  214 (496)
                      .+.||+|+|+|.+|+-+.+.+..+ .++|+.+.-   +.+.+....+       ..--.|.+... ..   . . .  ..
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~-------~ds~hg~~~~~-v~~~~~~l~v~g~~   87 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLK-------YDSVHGNFNGT-VEVSGKDLCINGKV   87 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHH-------CCTTTCSCSSC-EEECC-CEEETTEE
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhc-------ccccCCCCCCc-EEEeCCEEEECCeE
Confidence            356999999999999999999876 677666542   3333222111       00011222110 00   0 0 0  11


Q ss_pred             eecc--cCcccc----cCCCEEEEeccCChHHHHHHHHHHHhhCCCCe--eEeccCCcccHHHHHhhhcCCCeeeecccc
Q 010966          215 LTGV--LDYESF----KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERTYSKDRIVGAHFF  286 (496)
Q Consensus       215 i~~~--~~~~~~----~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~--il~sntS~~~~~~la~~~~~~~r~ig~hf~  286 (496)
                      +...  .+.+.+    .++|+||+|.+-....     +....++..++  +|+|+++.-         ..|.-+.|+   
T Consensus        88 i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~padd---------~~p~~V~GV---  150 (354)
T 3cps_A           88 VKVFQAKDPAEIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPPKD---------NVPMYVMGV---  150 (354)
T ss_dssp             EEEECCSCGGGCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCCSS---------CCCBCCTTT---
T ss_pred             EEEEecCChHHCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCCCC---------CCCEEEecc---
Confidence            2122  133333    5899999999865432     23455666777  888887631         012222222   


Q ss_pred             CcCCCCCe-EEEEeCCCCCHHHHHH-HHHHHHHcCC
Q 010966          287 SPAHVMPL-LEIVRTNQTSPQVIVD-LLDIGKKIKK  320 (496)
Q Consensus       287 ~P~~~~~l-veiv~~~~t~~e~~~~-~~~l~~~lGk  320 (496)
                      |+-...+- ..++..+.+..-.+.. +..+.+..|-
T Consensus       151 N~~~~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI  186 (354)
T 3cps_A          151 NNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGI  186 (354)
T ss_dssp             TGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCE
T ss_pred             CHHHhCcCCCcEEECCCcHHHHHHHHHHHHHHhCCe
Confidence            22211111 2377777766655544 4444455664

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.48  E-value=0.041  Score=55.10  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             EEEEEeCChhhHHHHHHHHhCC--------Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          149 KVAILGGGLMGSGIATALILSN--------YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G--------~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      +|||||+|.||..-+..+....        .+ |.++|+++++++...++          -|            .-...+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------~g------------~~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------LG------------WSTTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------HT------------CSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------cC------------CCcccC
Confidence            7999999999998777665431        24 55789999987764321          11            112356


Q ss_pred             Cccc-c--cCCCEEEEeccCChHH
Q 010966          220 DYES-F--KDVDMVIEAIIENVSL  240 (496)
Q Consensus       220 ~~~~-~--~~aDlVIeav~e~~~~  240 (496)
                      |+++ +  .+.|+|+.|+|.....
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H~   89 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSHA   89 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHH
Confidence            6655 3  4689999999987654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.45  E-value=0.024  Score=56.86  Aligned_cols=32  Identities=25%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~  179 (496)
                      .||.|+|+|.+|.++|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            599999999999999999999998 89999998

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.40  E-value=0.17  Score=52.19  Aligned_cols=34  Identities=26%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -+||.|||.|..|.+.|..|.+.|++|+++|.++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4699999999999999999999999999999965

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.37  E-value=0.051  Score=54.10  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=33.8

Q ss_pred             ccceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHH
Q 010966          145 RRVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFL  183 (496)
Q Consensus       145 ~~~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~  183 (496)
                      +.+++|.|.|+ |.+|+.++..|+.. |++|++++++++..
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   62 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL   62 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhh
Confidence            45689999995 99999999999998 99999999987543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=94.31  E-value=0.023  Score=56.53  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      -|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            499999999999999999999999999998653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.18  E-value=0.071  Score=50.62  Aligned_cols=42  Identities=29%  Similarity=0.369  Sum_probs=35.2

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |+++| |+ +-+|.+||..|++.|.+|++.|++++.+++..+.+
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i   51 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL   51 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            56655 54 78999999999999999999999999888765543

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.17  E-value=0.049  Score=53.74  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .++|.|+|+ |.+|+.++..|+..|++|+++++++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            468999998 9999999999999999999999976

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.15  E-value=0.03  Score=53.57  Aligned_cols=36  Identities=22%  Similarity=0.199  Sum_probs=33.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +++|.|.|+|.+|+.++..|++.|++|++++++++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            468999999999999999999999999999998654

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=94.14  E-value=0.062  Score=52.57  Aligned_cols=70  Identities=14%  Similarity=0.052  Sum_probs=48.5

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      |.||+|||+ |.||...+..+...+.+ |.++|++++... .                      .+........++++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~-~----------------------~~~~~~~~~~~~~~~l   59 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGL-V----------------------DSFFPEAEFFTEPEAF   59 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGG-G----------------------GGTCTTCEEESCHHHH
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHH-H----------------------HhhCCCCceeCCHHHH
Confidence            579999999 78999999999888876 567898876421 0                      0111123334454432


Q ss_pred             -----------cCCCEEEEeccCChH
Q 010966          225 -----------KDVDMVIEAIIENVS  239 (496)
Q Consensus       225 -----------~~aDlVIeav~e~~~  239 (496)
                                 .+.|+|+.|+|....
T Consensus        60 l~~~~~l~~~~~~vD~V~I~tP~~~H   85 (312)
T 3o9z_A           60 EAYLEDLRDRGEGVDYLSIASPNHLH   85 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEEECSCGGGH
T ss_pred             HHHhhhhcccCCCCcEEEECCCchhh
Confidence                       578999999998764

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=94.11  E-value=0.061  Score=52.80  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCc-EEEEeCCHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYP-VILKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~-V~l~d~~~~~  182 (496)
                      |.||+|||+ |.||...+..+...|.+ |.++|++++.
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            579999999 79999999999888875 6678888764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.09  E-value=0.029  Score=53.63  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC--CCcEEEEeCCHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILS--NYPVILKEVNEKFLE  184 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~--G~~V~l~d~~~~~~~  184 (496)
                      ++|.|.|+ |.+|+.++..|+..  |++|++.+++++..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            46899987 99999999999998  999999999876543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.06  E-value=0.053  Score=54.53  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=46.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      -.||+|||+| +|.--+..+.+.  +++++ ++|++++++++..++          -|             +...+|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------~g-------------v~~~~~~~~   62 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------FG-------------IPLYTSPEQ   62 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------TT-------------CCEESSGGG
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------hC-------------CCEECCHHH
Confidence            3589999999 898777766654  56755 789999877654321          12             223456655


Q ss_pred             -ccCCCEEEEeccCCh
Q 010966          224 -FKDVDMVIEAIIENV  238 (496)
Q Consensus       224 -~~~aDlVIeav~e~~  238 (496)
                       +++.|+|+.++|...
T Consensus        63 l~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           63 ITGMPDIACIVVRSTV   78 (372)
T ss_dssp             CCSCCSEEEECCC--C
T ss_pred             HhcCCCEEEEECCCcc
Confidence             578999999998754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.06  E-value=0.037  Score=55.19  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      .+|.|||+|..|.++|..|+++|++|+++|.+
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~   37 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR   37 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            47999999999999999999999999999986

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.03  E-value=0.047  Score=53.79  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=31.7

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .++|.|.|+ |.+|+.++..|+..|++|+++++++.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999996 99999999999999999999999654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.03  E-value=0.035  Score=56.14  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      -.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            35899999999999999999999999999999764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.00  E-value=0.035  Score=56.90  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .++|.|||+|..|...|..|+++|++|+++|..+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999875

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=93.97  E-value=0.16  Score=50.56  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=32.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ++|+|+|.|.+|..+|..+...|.+|+++|++++.
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            68999999999999999999999999999999764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.96  E-value=0.047  Score=54.47  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+|.|||+|..|.++|..|+++|++|+++|...
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            589999999999999999999999999999764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.95  E-value=0.049  Score=53.02  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      +++|.|+|+ |.+|+.++..|++.|++|++.++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            578999996 9999999999999999999999985

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.94  E-value=0.067  Score=51.97  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|+|+ |.+|+.++..|++.|++|++.+++++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            58999996 99999999999999999999999874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.93  E-value=0.048  Score=53.76  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=31.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            589999999999999999999999999999874

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.92  E-value=0.14  Score=52.53  Aligned_cols=64  Identities=27%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHh----------CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee
Q 010966          148 KKVAILGGGLMGSGIATALIL----------SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~----------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (496)
                      .+|+|||+|.||+.++..+..          .+++ |.++|++++..+..           .              ....
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~--------------~~~~   65 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------A--------------GGLP   65 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------H--------------TTCC
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------c--------------ccCc
Confidence            589999999999999987754          2344 45778888754321           0              0122


Q ss_pred             cccCccc-c--cCCCEEEEeccC
Q 010966          217 GVLDYES-F--KDVDMVIEAIIE  236 (496)
Q Consensus       217 ~~~~~~~-~--~~aDlVIeav~e  236 (496)
                      .++|+++ +  .+.|+|++|+|.
T Consensus        66 ~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           66 LTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             EESCTHHHHTCTTCCEEEECCCS
T ss_pred             ccCCHHHHhcCCCCCEEEEcCCC
Confidence            3556654 3  368999999985

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.89  E-value=0.072  Score=50.60  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=36.0

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++||  |++-+|.+||..|++.|.+|++.|++++.+++..+.+
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l   53 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL   53 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67777  5588999999999999999999999999888765544

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.85  E-value=0.053  Score=54.04  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4689999999999999999999999999999863

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.81  E-value=0.041  Score=54.60  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|.|||+|..|.++|..|+++|++|+++|...
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999864

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=93.81  E-value=0.068  Score=53.37  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=55.5

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHhhhcceecc-
Q 010966          147 VKKVAILG-GGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-----TQEKFEKTISLLTGV-  218 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~-  218 (496)
                      ++||+|+| .|.+|..++..|..+. ++|+.+..++....+..       +..  .+..     ....     ..+... 
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~-------~~~--~~~~~~~~~~~~~-----~~~~~~~   73 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKY-------KDA--CYWFQDRDIPENI-----KDMVVIP   73 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBH-------HHH--SCCCCSSCCCHHH-----HTCBCEE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccH-------HHh--cccccccccccCc-----eeeEEEe
Confidence            36999999 7999999999988764 57776643322111100       000  1111     0000     011111 


Q ss_pred             cCcccc-c-CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          219 LDYESF-K-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       219 ~~~~~~-~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      .+.+++ + ++|+||+|+|...  ..++...+   +..++.++++++..
T Consensus        74 ~~~~~~~~~~~DvV~~atp~~~--~~~~a~~~---~~aG~~VId~s~~~  117 (354)
T 1ys4_A           74 TDPKHEEFEDVDIVFSALPSDL--AKKFEPEF---AKEGKLIFSNASAY  117 (354)
T ss_dssp             SCTTSGGGTTCCEEEECCCHHH--HHHHHHHH---HHTTCEEEECCSTT
T ss_pred             CCHHHHhcCCCCEEEECCCchH--HHHHHHHH---HHCCCEEEECCchh
Confidence            133444 6 8999999998543  23333333   34567788887754

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.79  E-value=0.086  Score=52.45  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeC--CHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-PVILKEV--NEKFLE  184 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-~V~l~d~--~~~~~~  184 (496)
                      |||.|.|+ |.+|+.++..|++.|+ +|+..|+  +++.++
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~   41 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELE   41 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHH
Confidence            58999995 9999999999999999 9999999  444443

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=93.78  E-value=0.045  Score=55.59  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |+|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.76  E-value=0.37  Score=46.13  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=33.9

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ||+|| |+ +-+|.++|..|++.|.+|++.|++++.+++..+
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~   71 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA   71 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            66666 54 779999999999999999999999998876543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.76  E-value=0.1  Score=50.25  Aligned_cols=41  Identities=24%  Similarity=0.187  Sum_probs=36.3

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|+| +|-+|.+++..|+..|.+|++.+++++.++...+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~  161 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD  161 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            5799999 8999999999999999999999999887765543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.74  E-value=0.051  Score=55.00  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+|.|||+|..|...|..|++.|++|+++|.++
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            589999999999999999999999999999874

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=93.68  E-value=0.046  Score=55.14  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999999999998754

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=93.67  E-value=0.17  Score=50.10  Aligned_cols=71  Identities=10%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             ceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      +.||+|||+|.||.. .+..+... +++|+ ++|++  ..+...+.        ...            ..+...+++++
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~--------~~~------------~~~~~~~~~~~   59 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAP--------FKE------------KGVNFTADLNE   59 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHH--------HHT------------TTCEEESCTHH
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHh--------hCC------------CCCeEECCHHH
Confidence            369999999999984 55555544 67764 78888  22211110        000            11234566654


Q ss_pred             -cc--CCCEEEEeccCChH
Q 010966          224 -FK--DVDMVIEAIIENVS  239 (496)
Q Consensus       224 -~~--~aDlVIeav~e~~~  239 (496)
                       +.  +.|+|+.|+|....
T Consensus        60 ll~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A           60 LLTDPEIELITICTPAHTH   78 (349)
T ss_dssp             HHSCTTCCEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEeCCcHHH
Confidence             33  58999999998764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=93.65  E-value=0.13  Score=51.35  Aligned_cols=98  Identities=17%  Similarity=0.267  Sum_probs=56.2

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILG-GGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .||+|+| .|.+|..+.+.|..+. ++|+.+....+.-.    .+    +..  .+.+...    ....+.... .+.++
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~----~~----~~~--~~~~~~~----v~~dl~~~~-~~~~~   81 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ----SM----ESV--FPHLRAQ----KLPTLVSVK-DADFS   81 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTS----CH----HHH--CGGGTTS----CCCCCBCGG-GCCGG
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCC----CH----HHh--CchhcCc----ccccceecc-hhHhc
Confidence            5899999 7999999999998875 37766654322110    00    000  0100000    001111121 22356


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      ++|+||+|+|.....     +....+ ..++.++++++...
T Consensus        82 ~vDvVf~atp~~~s~-----~~a~~~-~aG~~VId~sa~~R  116 (359)
T 1xyg_A           82 TVDAVFCCLPHGTTQ-----EIIKEL-PTALKIVDLSADFR  116 (359)
T ss_dssp             GCSEEEECCCTTTHH-----HHHHTS-CTTCEEEECSSTTT
T ss_pred             CCCEEEEcCCchhHH-----HHHHHH-hCCCEEEECCcccc
Confidence            899999999876542     223344 66788888888653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.59  E-value=0.056  Score=54.30  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|.|||+|..|.+.|..|+++|++|+++|..+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999999999864

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=93.51  E-value=0.065  Score=54.96  Aligned_cols=32  Identities=25%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~  179 (496)
                      .+|.|||+|..|+.++..|+..|+ +++++|.+
T Consensus        41 ~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D   73 (434)
T 1tt5_B           41 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   73 (434)
T ss_dssp             CCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            589999999999999999999998 89999865

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=93.46  E-value=0.041  Score=53.27  Aligned_cols=93  Identities=13%  Similarity=-0.043  Sum_probs=56.8

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      ..||+|+|+ |.||..++..+...|++ .++.+++...                 |.       . ...+....++++ .
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~-----------------g~-------~-~~G~~vy~sl~el~   60 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKG-----------------GT-------T-HLGLPVFNTVREAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC-------E-ETTEEEESSHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcc-----------------cc-------e-eCCeeccCCHHHHh
Confidence            369999998 99999999999888998 5566666421                 00       0 011333455544 3


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          225 K--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       225 ~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      +  ++|++|.++|....  .+++.+..+. .-..++. -|++++.++
T Consensus        61 ~~~~~D~viI~tP~~~~--~~~~~ea~~~-Gi~~iVi-~t~G~~~~~  103 (288)
T 2nu8_A           61 AATGATASVIYVPAPFC--KDSILEAIDA-GIKLIIT-ITEGIPTLD  103 (288)
T ss_dssp             HHHCCCEEEECCCGGGH--HHHHHHHHHT-TCSEEEE-CCCCCCHHH
T ss_pred             hcCCCCEEEEecCHHHH--HHHHHHHHHC-CCCEEEE-ECCCCCHHH
Confidence            4  79999999997642  3444443332 2233332 455666543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=93.46  E-value=0.099  Score=48.31  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=34.2

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      |++|.|.|+ |-+|..+|..|+..|++|++.+++++.++...
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   42 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVT   42 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            356778876 88999999999999999999999998876643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.44  E-value=0.26  Score=50.94  Aligned_cols=82  Identities=18%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|.|||+|..|..-+..|.+.|.+|+++|.+... ++.           ..+.+.++         .+...-..+++.+
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~-----------l~~~~~i~---------~~~~~~~~~~l~~   72 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTV-----------WANEGMLT---------LVEGPFDETLLDS   72 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHH-----------HHTTTSCE---------EEESSCCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHH-----------HHhcCCEE---------EEECCCCccccCC
Confidence            58999999999999999999999999999985321 111           11222111         1111112346789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHh
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEK  250 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~  250 (496)
                      +|+||-+ |.+.++...++....+
T Consensus        73 ~~lVi~a-t~~~~~n~~i~~~a~~   95 (457)
T 1pjq_A           73 CWLAIAA-TDDDTVNQRVSDAAES   95 (457)
T ss_dssp             CSEEEEC-CSCHHHHHHHHHHHHH
T ss_pred             ccEEEEc-CCCHHHHHHHHHHHHH
Confidence            9999886 5666666677665443

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=93.44  E-value=0.04  Score=54.46  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC------CcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSN------YPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G------~~V~l~d~~~  180 (496)
                      |.|.|||+|.+|.+.|..|+++|      ++|+++|.+.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            47999999999999999999998      8999999874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.43  E-value=0.16  Score=46.86  Aligned_cols=43  Identities=28%  Similarity=0.274  Sum_probs=36.4

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      +++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   45 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHE   45 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            356777776 8899999999999999999999999887765544

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.43  E-value=0.055  Score=54.81  Aligned_cols=33  Identities=27%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ++|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            479999999999999999999999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.42  E-value=0.047  Score=53.17  Aligned_cols=35  Identities=29%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      +.++|.|||+|.-|...|..|++.|++|+++|..+
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            45789999999999999999999999999999843

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=93.41  E-value=0.039  Score=54.82  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..++|.|||+|.+|.+.|..|+ .|++|+++|.++
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            4568999999999999999999 699999999874

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=93.39  E-value=0.036  Score=53.07  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=32.2

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~  183 (496)
                      |||.|.|+ |.+|+.++..|... |++|++.+++++..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~   38 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV   38 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH
Confidence            47999996 99999999999987 99999999998753

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.38  E-value=0.12  Score=54.30  Aligned_cols=36  Identities=31%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +|||.|.|+ |.+|+.++..|+..|++|+++++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            579999995 999999999999999999999998753

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=93.32  E-value=0.14  Score=47.72  Aligned_cols=40  Identities=13%  Similarity=0.166  Sum_probs=34.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   44 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQE   44 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56778876 89999999999999999999999998876644

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=93.29  E-value=0.067  Score=56.41  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=31.9

Q ss_pred             cceEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCH
Q 010966          146 RVKKVAILGGGLMGSGIATALIL---SNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~  180 (496)
                      ++.+|.|||+|..|...|..|++   .|++|+++|..+
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            35689999999999999999999   999999999853

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.25  E-value=0.97  Score=42.18  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=35.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   55 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASH   55 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45667776 8899999999999999999999999887765443

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.24  E-value=0.28  Score=49.79  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             ccceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       145 ~~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      .++++|.|.|+ |.+|+.++..|+..|++|++++++++.
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~  105 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNE  105 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSH
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCCh
Confidence            45689999997 999999999999999999999999873

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.23  E-value=0.071  Score=49.44  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~  182 (496)
                      ++|.|.|+ |.+|..++..|+..|+  +|++.+++++.
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            57999985 9999999999999999  99999998754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=93.21  E-value=0.072  Score=53.57  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            5899999999999999999999999999998753

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.20  E-value=0.12  Score=48.84  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             eEEEEEeC-C-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|.|+ | -+|..+|..|++.|++|++.+++.+.++...+
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD   65 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence            57888898 8 59999999999999999999999988776544

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.19  E-value=0.067  Score=52.38  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=34.1

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .++|.|.|+ |.+|+.++..|+..|++|++.+++++.....
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~   45 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREA   45 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHH
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHH
Confidence            358999986 9999999999999999999999987654443

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.14  E-value=0.49  Score=47.79  Aligned_cols=39  Identities=33%  Similarity=0.399  Sum_probs=34.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  186 (496)
                      .+|.|+|+|.+|...++.+...|. +|+..|.++++++.+
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  254 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA  254 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            489999999999999988888999 899999999887764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=93.14  E-value=0.094  Score=49.55  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      +|.|-|+ +-+|.+||..|++.|.+|++.|++++.++..
T Consensus         4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~   42 (247)
T 3ged_A            4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADF   42 (247)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3445454 8899999999999999999999998876553

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=93.13  E-value=0.063  Score=54.11  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=31.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999999999998753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.13  E-value=1.3  Score=43.82  Aligned_cols=39  Identities=15%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|.|+|+|.+|...++.+...|.+|+..++++++++.+
T Consensus       191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  229 (363)
T 3uog_A          191 DRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA  229 (363)
T ss_dssp             CEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH
Confidence            489999999999999999888999999999999887764

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=93.13  E-value=0.091  Score=50.83  Aligned_cols=92  Identities=14%  Similarity=0.005  Sum_probs=56.7

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (496)
                      .+||+|+|+ |.||..++..+...|++ .++.++|...                 |.       . ...+....+++++ 
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~-----------------g~-------~-i~G~~vy~sl~el~   60 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKG-----------------GM-------E-VLGVPVYDTVKEAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC-------E-ETTEEEESSHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCC-----------------Cc-------e-ECCEEeeCCHHHHh
Confidence            468999998 99999999999888998 5566666421                 00       0 0123334455443 


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966          225 K--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (496)
Q Consensus       225 ~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~  268 (496)
                      +  ++|++|.++|..  .-.+++.+..+. .-..+++ .|++++.+
T Consensus        61 ~~~~~Dv~Ii~vp~~--~~~~~~~ea~~~-Gi~~vVi-~t~G~~~~  102 (288)
T 1oi7_A           61 AHHEVDASIIFVPAP--AAADAALEAAHA-GIPLIVL-ITEGIPTL  102 (288)
T ss_dssp             HHSCCSEEEECCCHH--HHHHHHHHHHHT-TCSEEEE-CCSCCCHH
T ss_pred             hcCCCCEEEEecCHH--HHHHHHHHHHHC-CCCEEEE-ECCCCCHH
Confidence            4  799999999854  334555554432 2232332 34566654

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=93.00  E-value=0.07  Score=52.59  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC
Q 010966          147 VKKVAILGGGLMGSGIATALILS  169 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~  169 (496)
                      ..||+|||+|.||+.++..+...
T Consensus         4 ~irVgIiG~G~VG~~~~~~L~~~   26 (325)
T 3ing_A            4 EIRIILMGTGNVGLNVLRIIDAS   26 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCcHHHHHHHHHHHhc
Confidence            45899999999999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.98  E-value=0.22  Score=51.56  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=36.6

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .++++|.|+|+|.+|..+|..| ..+++|.+++.++++++...
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la  274 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRL-EQTYSVKLIERNLQRAEKLS  274 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHH-TTTSEEEEEESCHHHHHHHH
T ss_pred             ccccEEEEEcchHHHHHHHHHh-hhcCceEEEecCHHHHHHHH
Confidence            4567999999999999999987 46799999999999887754

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=92.96  E-value=0.075  Score=53.29  Aligned_cols=34  Identities=26%  Similarity=0.178  Sum_probs=31.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~-~G-~~V~l~d~~~  180 (496)
                      ..+|.|||+|..|.+.|..|++ +| ++|+++|.++
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            4589999999999999999999 99 9999999864

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=92.94  E-value=0.15  Score=47.47  Aligned_cols=42  Identities=19%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   57 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQ   57 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHH
Confidence            45667776 8999999999999999999999999887765543

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=92.89  E-value=0.31  Score=48.14  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC---CcEEEE-eC-CHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSN---YPVILK-EV-NEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G---~~V~l~-d~-~~~~~~~  185 (496)
                      .||+|+|+|.+|+.+.+.+..++   ++|+.+ |+ +++.+..
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~   45 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAH   45 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHH
Confidence            59999999999999999988763   566544 44 5554443

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=92.88  E-value=0.054  Score=56.67  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALIL---SNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~  180 (496)
                      +.+|.|||+|..|...|..|++   .|++|+++|..+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            4689999999999999999999   999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.88  E-value=0.099  Score=49.72  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=30.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      +.+|.|||+|.-|...|..|++.|++|+++|.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   34 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAG   34 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            368999999999999999999999999999964

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=92.86  E-value=0.15  Score=50.85  Aligned_cols=99  Identities=24%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             ceEEEEEe-CChhhHHHHHHHHhCC-CcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHhhhcceecc
Q 010966          147 VKKVAILG-GGLMGSGIATALILSN-YPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKM-----TQEKFEKTISLLTGV  218 (496)
Q Consensus       147 ~~kV~VIG-aG~mG~~iA~~la~~G-~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~  218 (496)
                      +.||+|+| .|.+|..+...|..+. ++|+.+. .+...-+.        ++..  .+.+     ....     ..+...
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~--------~~~~--~~~~~~~~~~~~~-----~~~~~~   68 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKK--------YKDA--VKWIEQGDIPEEV-----QDLPIV   68 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSB--------HHHH--CCCCSSSSCCHHH-----HTCBEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCC--------HHHh--cCcccccccccCC-----ceeEEe
Confidence            46999999 6999999999887653 4776664 22111010        0000  0111     0000     011121


Q ss_pred             -cCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          219 -LDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       219 -~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                       .+.+.++++|+||+|+|...  -.++...   ++..++.++++++..
T Consensus        69 ~~d~~~~~~vDvVf~atp~~~--s~~~a~~---~~~aG~~VId~s~~~  111 (350)
T 2ep5_A           69 STNYEDHKDVDVVLSALPNEL--AESIELE---LVKNGKIVVSNASPF  111 (350)
T ss_dssp             CSSGGGGTTCSEEEECCCHHH--HHHHHHH---HHHTTCEEEECSSTT
T ss_pred             eCCHHHhcCCCEEEECCChHH--HHHHHHH---HHHCCCEEEECCccc
Confidence             13345678999999998543  2233333   334566677887754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.86  E-value=1.2  Score=43.89  Aligned_cols=39  Identities=31%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  186 (496)
                      .+|.|+|+|.+|...++.+...|. +|+..++++++++.+
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  208 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA  208 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            379999999999999999988999 999999999877654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.85  E-value=0.18  Score=47.11  Aligned_cols=42  Identities=26%  Similarity=0.314  Sum_probs=36.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      ++|.|.|+ |-+|..+|..|++.|++|++.|++++.++...+.
T Consensus        10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (253)
T 3qiv_A           10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ   52 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            46777776 8999999999999999999999999887765543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=92.85  E-value=0.069  Score=53.40  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=31.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            5899999999999999999999999999998753

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=92.81  E-value=0.072  Score=50.68  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhC--CCcEEEEeCCHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILS--NYPVILKEVNEKFLE  184 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~--G~~V~l~d~~~~~~~  184 (496)
                      +|.|.|+ |.+|+.++..|+..  |++|++.+++++..+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   39 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ   39 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh
Confidence            4789987 99999999999998  999999999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.79  E-value=0.2  Score=46.91  Aligned_cols=41  Identities=24%  Similarity=0.148  Sum_probs=34.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGD   49 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            46777776 899999999999999999999999987765443

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=92.71  E-value=0.028  Score=60.15  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHH
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL   37 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~   37 (496)
                      ++++|+.++|+||+++||||+|++.+++++.+.+++.
T Consensus       480 ~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          480 KIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             TTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             HHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence            4789999999999999999999988888887777653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.69  E-value=0.2  Score=46.95  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|.|+ |-+|..++..|++.|++|++.+++++.++...
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV   54 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56788876 99999999999999999999999988766543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=92.67  E-value=0.098  Score=46.89  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ++|.|+|+ |.+|+.++..|++.|++|++++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            58999998 999999999999999999999999764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=92.65  E-value=0.05  Score=55.75  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC------CcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSN------YPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G------~~V~l~d~~~  180 (496)
                      +++|+|||+|..|.+.|..|+++|      ++|+++|.++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            468999999999999999999999      9999999864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.61  E-value=0.7  Score=45.75  Aligned_cols=40  Identities=18%  Similarity=0.206  Sum_probs=35.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|.+ |+..|.++++++.+.
T Consensus       181 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  221 (363)
T 3m6i_A          181 DPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK  221 (363)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            3799999999999999988889997 999999999877654

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=92.60  E-value=0.35  Score=48.41  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC---CcEEEE-eC-CHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSN---YPVILK-EV-NEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G---~~V~l~-d~-~~~~~~~  185 (496)
                      .||+|+|+|.+|+.+.+.+..++   ++|+.+ |+ +++.+..
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~   45 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAH   45 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHH
Confidence            59999999999999999988763   566544 44 5554433

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.60  E-value=0.11  Score=50.55  Aligned_cols=34  Identities=15%  Similarity=0.082  Sum_probs=31.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..+|.|||+|.-|...|..|++.|++|+++|.++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4689999999999999999999999999999864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.60  E-value=0.081  Score=54.50  Aligned_cols=34  Identities=32%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~  180 (496)
                      +++|+|||+|..|.+.|..|+++|+  +|++++.++
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            3689999999999999999999999  999999754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=92.55  E-value=0.079  Score=55.37  Aligned_cols=33  Identities=30%  Similarity=0.609  Sum_probs=30.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|.|||+|.+|.++|..|+++|++|+++|.+.
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            469999999999999999999999999999853

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=92.54  E-value=0.13  Score=49.60  Aligned_cols=33  Identities=18%  Similarity=0.038  Sum_probs=31.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      ..+|.|||+|.-|...|..|++.|++|+++|.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            468999999999999999999999999999986

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=92.53  E-value=0.043  Score=55.26  Aligned_cols=81  Identities=16%  Similarity=0.213  Sum_probs=54.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      .||.|||+ |..|.+-+..+..-|.   .|+++|+++..                 +|.                 .++.
T Consensus       215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~-----------------~g~-----------------~~~~  260 (394)
T 2qrj_A          215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS-----------------RGG-----------------PFDE  260 (394)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT-----------------TCS-----------------CCTH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc-----------------cCC-----------------chhh
Confidence            48999999 9999999999999998   99999988621                 121                 0244


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhC-CCCeeEeccC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNT  262 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~snt  262 (496)
                      +.++|+||.|+.-....-+-+-++..+.+ +++.+|++.+
T Consensus       261 i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          261 IPQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             HHHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             HhhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            67899999999631100001112333445 7888887654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=92.52  E-value=0.11  Score=55.12  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCH
Q 010966          146 RVKKVAILGGGLMGSGIATALIL---SNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~  180 (496)
                      ++.+|.|||+|..|...|..|++   .|++|+++|..+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            46789999999999999999999   999999999853

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.47  E-value=0.22  Score=47.15  Aligned_cols=41  Identities=29%  Similarity=0.327  Sum_probs=34.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45777766 899999999999999999999999987765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	2e-37
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	5e-34
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-20
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	7e-20
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	2e-14
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	4e-12
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	3e-05
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	4e-04
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	0.001
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	0.002
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	0.003
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	0.003
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	0.004

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  133 bits (336), Expect = 2e-37
 Identities = 70/184 (38%), Positives = 112/184 (60%)

Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
           + VK+ A+LG G+MG GIA        P+++K++NE  +E G+      L  RV KG+MT
Sbjct: 2   KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61

Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
             K  + ++ +   L Y  F +VD+V+EA++EN  +KQ + A++E +     ILASNTST
Sbjct: 62  PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
           I ++L+ +     +  VG HFF+P H+MPL+E++R  ++S   +   +   KK+ K PIV
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181

Query: 325 VGNC 328
           V +C
Sbjct: 182 VNDC 185

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 5e-34
 Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 6/188 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 203 -MTQEKFEKTISLLTGVLDYES-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
               E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183

Query: 321 TPIVVGNC 328
            P+   + 
Sbjct: 184 HPVSCKDT 191

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 89.8 bits (221), Expect = 2e-20
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
            + + K  + E+A  +  VDAVV  ++L + A       +     + A      +  K+ 
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLN 226

Query: 58  PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
            + +           A +  PN   P+  I  ++     G    L+ EA  F KL ++  
Sbjct: 227 AIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSA 286

Query: 118 CKSLVHIFFAQRGTSKVPGVTD 139
              L+ +F   +   K   V D
Sbjct: 287 SNCLIGLFLNDQELKKKAKVYD 308

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 83.3 bits (205), Expect = 7e-20
 Identities = 41/114 (35%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF 389
           GF VNR+ FPY      LV  G D   ID+ + KFG PMGP  L D+VG           
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 390 IENFPERTYKS--MIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEK 441
            E FP+R        I  + E KR G+   KGFY Y+  +K      V   + +
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLE 114

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFG--MPMGPFRLADLVGFGVAIATGM 387
           GF VNR+  PY   A  L ERG           K G   PMGPF L D VG         
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 388 QFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLY 423
            + E   E      S  +  +  + + G+ T +GFY Y
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 98

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 63.8 bits (155), Expect = 4e-12
 Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 33/227 (14%)

Query: 125 FFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL--------SNYPVILK 176
           F      +K  G  ++ L           G  L+        ++            V++ 
Sbjct: 22  FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77

Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--------------- 221
           E + K +               K  ++ + K ++        +                 
Sbjct: 78  EFDPKEVMEAHLSGNPE-SIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDR 136

Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYSKD- 278
           E+ +  D+VI  +    + +  I        P   I+  A    T     I +    +D 
Sbjct: 137 EAVEGADIVITWL-PKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195

Query: 279 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
            I   H      +   + I      S + +  L +IGK  +     +
Sbjct: 196 NITSYHPGCVPEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM 241

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 14/145 (9%)

Query: 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK 207
           K  A+LG G  G   A  L L    V+  +++ + ++         +Q R          
Sbjct: 2   KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIK--------EIQDRGAIIAEGPGL 53

Query: 208 FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL----ASNTS 263
                  L       + KD D+++  +         I A++  Y     ++     +   
Sbjct: 54  AGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIILNPGATGG 111

Query: 264 TIDLNLIGERTYSKDRIVGAHFFSP 288
            ++   I     + +  +G      
Sbjct: 112 ALEFRKILRENGAPEVTIGETSSML 136

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDR---AITKFGMPM---GPFRLADLVGFGVAIATG 386
           +N M  P        +E G      +     +   G P+   G  R  D +G    +A  
Sbjct: 8   INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL- 66

Query: 387 MQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFY 421
                      + +     ++E  + G    + F+
Sbjct: 67  ADQYAELGALYHPT---AKLREMAKNG----QSFF 94

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 28/150 (18%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
           K+ I+G G +GS  A AL++  +   +  ++          V            +    F
Sbjct: 2   KIGIVGLGRVGSSTAFALLMKGFAREMVLID----------VDKKRAEGDALDLIHGTPF 51

Query: 209 EKTISLLTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCP- 253
            +  ++  G  DY   K  D+VI A                 N  + ++I  ++ KY P 
Sbjct: 52  TRRANIYAG--DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD 109

Query: 254 PHCILASNTSTIDLNLIGERT-YSKDRIVG 282
              I+ +N   +      + +     ++ G
Sbjct: 110 SIVIVVTNPVDVLTYFFLKESGMDPRKVFG 139

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182
           K+ ++G GL+G+ +A  L    + +I     +  
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQST 35

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 17/142 (11%), Positives = 49/142 (34%), Gaps = 9/142 (6%)

Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
            +V ++G G +G+    AL+       ++L + NE             +      V    
Sbjct: 7   ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASN 261
              +       ++      +   +  + +  + +N+++ + I   +         ++A+N
Sbjct: 67  GDYDDCRDADLVVICAGANQKPGETRLDL--VDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 262 TSTIDLNLIGERT-YSKDRIVG 282
              I      + +    +R++G
Sbjct: 125 PVDILTYATWKFSGLPHERVIG 146

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
           +K+ I+G G +G+ +A  LI        +  + NE  ++A         ANL++      
Sbjct: 2   RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 203 MTQEKFEKT--ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL-A 259
                      +    G +  +           +    S+ Q +  +L++      ++  
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 260 SNTSTIDLNLIGERT-YSKDRIVG 282
           SN   +   L    T +   +++G
Sbjct: 122 SNPVDVITALFQHVTGFPAHKVIG 145

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185
            K  + G G  G+ +A  L      V +  +NE+ +  
Sbjct: 8   NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.94
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.79
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.76
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.71
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.69
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	99.68
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.66
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.62
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.62
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.55
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	99.38
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	99.34
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.33
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	99.29
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	99.28
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.28
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.27
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.25
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.24
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.23
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.2
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	99.18
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.17
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.16
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.11
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.06
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.04
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.03
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.98
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.96
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.95
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	98.94
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.88
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.87
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.86
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.82
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.75
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.74
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.72
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.71
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.7
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.67
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.64
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.45
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.41
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.39
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.39
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.39
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	98.34
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.3
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.27
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.23
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.14
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	98.13
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.12
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.09
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.04
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.9
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.88
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.79
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.75
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.74
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.66
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.65
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.62
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.58
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.57
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.57
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.56
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.49
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.22
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.19
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.18
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.14
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.13
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.07
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.0
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.0
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.99
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	96.96
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.86
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.84
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.81
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.79
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.77
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.73
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.66
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.63
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.57
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.56
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.51
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.41
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.38
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.37
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.32
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.27
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.22
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.16
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.14
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.1
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.07
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.03
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.03
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.0
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.94
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.91
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.89
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.87
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.86
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.81
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.72
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.7
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.69
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.63
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.59
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.49
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.48
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.47
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.45
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.43
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.41
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.4
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.38
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.27
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.25
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.19
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.17
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.16
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.13
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.11
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.1
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.1
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.09
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.06
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.05
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.03
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.98
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.9
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.88
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.83
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.79
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.73
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.72
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.71
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.7
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.65
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.61
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.6
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.6
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.58
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.56
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	94.53
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.53
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.46
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.4
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.37
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.28
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.27
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.18
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.13
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.06
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.03
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.0
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.96
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.96
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.92
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.91
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.85
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.84
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.8
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.77
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.67
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.61
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.59
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.58
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.57
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.55
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.51
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.47
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.44
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.38
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.33
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.33
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.31
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.26
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.26
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.08
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.03
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.98
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.9
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.89
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.69
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.64
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.6
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.49
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.48
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.4
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.4
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.36
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	92.35
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.35
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.3
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.25
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.23
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.13
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.08
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.01
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.86
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.73
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.68
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.64
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.46
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.37
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.29
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.21
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.18
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.15
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.86
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.85
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	90.81
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.7
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.62
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.55
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.53
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.36
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.29
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.27
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.21
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.13
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.1
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.07
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.02
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.01
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.01
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.94
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.93
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.79
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.54
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.31
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.28
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.27
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.2
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.09
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	89.07
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	88.63
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.6
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.56
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	88.55
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.54
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.54
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.46
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.44
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.3
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.15
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.94
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.84
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	87.67
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.58
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.43
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.26
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.11
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	87.06
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.53
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.52
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.4
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.33
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.28
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	86.16
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	86.06
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.97
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	85.43
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	85.34
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.25
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	85.13
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.93
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	84.91
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.77
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	84.2
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	83.89
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.76
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.66
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	83.51
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	83.32
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.27
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	83.18
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.14
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.99
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.71
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	82.71
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.58
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	82.55
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.37
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	82.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	82.15
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	81.51
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	81.43
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	81.34
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	81.21
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	81.01
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	80.91
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.62
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	80.59
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	80.45
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	80.09

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.4e-42  Score=319.03  Aligned_cols=185  Identities=38%  Similarity=0.674  Sum_probs=180.5

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      +.|+||+|||+|+||++||..++.+|++|++||++++.++++.+++...+...+.++.+.+.+.+..++++..+++++++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCC
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~  304 (496)
                      .+||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++++.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCceEEecCcc
Q 010966          305 PQVIVDLLDIGKKIKKTPIVVGNCT  329 (496)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~v~v~d~~  329 (496)
                      +++++.+..|++.+||.|++++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-42  Score=315.49  Aligned_cols=185  Identities=35%  Similarity=0.559  Sum_probs=174.4

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHhhhcceeccc
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-----QEKFEKTISLLTGVL  219 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~  219 (496)
                      ..|+||+|||+|+||++||..++++|++|++||++++.++++.+++.+.++..++++...     ....+..++++..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            358999999999999999999999999999999999999999999999999999988764     334556778999998


Q ss_pred             Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE
Q 010966          220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV  298 (496)
Q Consensus       220 ~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv  298 (496)
                      +++ .+++||+|||||||++++|+++|+++++.+++++|++||||+++++++++.+.+|+||+|+|||||++.+|+|||+
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv  161 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI  161 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence            874 5999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHHHHHHHcCCceEEecCcc
Q 010966          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT  329 (496)
Q Consensus       299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  329 (496)
                      +++.|++++++.+.+|++.+||.|++++|.|
T Consensus       162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            9999999999999999999999999999876

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.1e-28  Score=196.63  Aligned_cols=95  Identities=36%  Similarity=0.535  Sum_probs=89.7

Q ss_pred             cchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC--ccccchHHH
Q 010966          330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPI  405 (496)
Q Consensus       330 G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~  405 (496)
                      |||+||++.++++||++++++|+ ||++||.+++ ++|||+|||+++|.+|||++.++++.+.+..+++  +.|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            89999999999999999999997 9999999998 8999999999999999999999999998887763  457889999


Q ss_pred             HHhcCCCccccCceeeeec
Q 010966          406 MQEDKRAGETTRKGFYLYD  424 (496)
Q Consensus       406 ~~~~G~lG~k~g~GFY~y~  424 (496)
                      |+++|++|+|||+|||+|+
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999995

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.94  E-value=4.2e-28  Score=206.14  Aligned_cols=99  Identities=40%  Similarity=0.696  Sum_probs=89.8

Q ss_pred             cchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC--ccccchHHHHH
Q 010966          330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPIMQ  407 (496)
Q Consensus       330 G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~~  407 (496)
                      ||++||++.++++||++++++|+++++||.+|+++|||||||+++|.+|||+++++++.+.+.++++  ..+++++++|+
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999888764  34668999999


Q ss_pred             hcCCCccccCceeeeecCCCC
Q 010966          408 EDKRAGETTRKGFYLYDERRK  428 (496)
Q Consensus       408 ~~G~lG~k~g~GFY~y~~~~~  428 (496)
                      ++|++|+|||+|||+|+++++
T Consensus        81 ~~g~lG~Ktg~GFY~y~~~~~  101 (124)
T d1wdka1          81 EAKRLGQKNGKGFYAYEADKK  101 (124)
T ss_dssp             HTTCCBTTTTBSSSEEC----
T ss_pred             HcCCccccCCcEeeEcCCCCC
Confidence            999999999999999986544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.79  E-value=1.9e-18  Score=154.00  Aligned_cols=152  Identities=14%  Similarity=0.158  Sum_probs=117.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |||+|||+|.||++||..|.++|++|++||++++.++.+.           +.|.+.           ...++.+.+++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-----------~~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-----------Hhhccc-----------eeeeeccccccc
Confidence            6899999999999999999999999999999998877653           233221           234567889999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHHHhhhcCCCeeeeccccCcCC------------CCCe
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFSPAH------------VMPL  294 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~la~~~~~~~r~ig~hf~~P~~------------~~~l  294 (496)
                      |+||.|+|.  ....++++++.+.++++++|++.+|... +.......  ..++++.|++.++.            ....
T Consensus        59 DiIilavp~--~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~--~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~  134 (165)
T d2f1ka2          59 KIIFLCTPI--QLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQL--WSGFIGGHPMAGTAAQGIDGAEENLFVNAP  134 (165)
T ss_dssp             SEEEECSCH--HHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHH--STTCEEEEECCCCSCSSGGGCCTTTTTTCE
T ss_pred             ccccccCcH--hhhhhhhhhhhhhcccccceeeccccchHHHHHHHHh--hcccccceeeecccccchhhhcccccCCCe
Confidence            999999984  3567899999999999999977655432 22222222  34689999975432            1345


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCceEEe
Q 010966          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV  325 (496)
Q Consensus       295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v  325 (496)
                      +.+++...++++.++.+.++++.+|..++.|
T Consensus       135 ~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         135 YVLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            6688899999999999999999999987765

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.76  E-value=3.4e-19  Score=142.90  Aligned_cols=84  Identities=19%  Similarity=0.320  Sum_probs=77.8

Q ss_pred             cchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccchH
Q 010966          330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII  403 (496)
Q Consensus       330 G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l  403 (496)
                      ..|+||++.+++|||++++++|+  +++|||.++. |+|||+   |||+++|.+|+|.++++++.+. .+++++.|+++|
T Consensus         5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L   83 (95)
T d1wdka2           5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKL   83 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHH
Confidence            45899999999999999999996  8999999999 999999   9999999999999999999874 588888899999


Q ss_pred             HHHHhcCCCccccCceee
Q 010966          404 PIMQEDKRAGETTRKGFY  421 (496)
Q Consensus       404 ~~~~~~G~lG~k~g~GFY  421 (496)
                      ++|+++|       +|||
T Consensus        84 ~~~~~~g-------~~Fy   94 (95)
T d1wdka2          84 REMAKNG-------QSFF   94 (95)
T ss_dssp             HHHHHTT-------CCSC
T ss_pred             HHHHHhC-------cCCC
Confidence            9998764       8999

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.71  E-value=1.7e-16  Score=141.92  Aligned_cols=154  Identities=15%  Similarity=0.129  Sum_probs=116.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      |+||+|||+|.||++||..|.++|+  +|+.||++++.++.+.+           .+.+.         ......+....
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~---------~~~~~~~~~~~   60 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID---------EGTTSIAKVED   60 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS---------EEESCGGGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch---------hhhhhhhhhhc
Confidence            5689999999999999999999996  79999999998887542           33221         11111122234


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCC------------
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH------------  290 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~------------  290 (496)
                      .++|+||.|+|.+  ...+++.++.+++++++++++.+|+..  ...+...+  +.+|++.||+....            
T Consensus        61 ~~~dlIila~p~~--~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~Lf  136 (171)
T d2g5ca2          61 FSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDNLY  136 (171)
T ss_dssp             TCCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSSTT
T ss_pred             cccccccccCCch--hhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHHhh
Confidence            5899999999854  456788999999999999998887643  34555444  45899999975321            


Q ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEE
Q 010966          291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV  324 (496)
Q Consensus       291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~  324 (496)
                      ....+-++++..++++.++.+.+|++.+|..++.
T Consensus       137 ~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         137 EGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            1345668899999999999999999999987664

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.69  E-value=2.2e-16  Score=138.48  Aligned_cols=147  Identities=15%  Similarity=0.097  Sum_probs=118.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      |||+|||+|.||.+|+..|.++| ++|+++|++++.++...++           .            .+...++.+++.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------~------------~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------L------------GVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------T------------CCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------c------------ccccccccccccc
Confidence            68999999999999999998877 8999999999987764321           1            1344567778899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeCCCCCH
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQTSP  305 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~~t~~  305 (496)
                      ||+||.||+  +....++++++   .+.+.+++|..++.+++.+.+.+....++++.+|+.|......+. ++.+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999996  33333444443   345788999999999999999988777899999999998887766 446777889


Q ss_pred             HHHHHHHHHHHHcCCce
Q 010966          306 QVIVDLLDIGKKIKKTP  322 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~~  322 (496)
                      +..+.+.++|..+|+..
T Consensus       133 ~~~~~v~~l~~~~G~~~  149 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTV  149 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            99999999999999754

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.68  E-value=1.2e-17  Score=163.73  Aligned_cols=137  Identities=23%  Similarity=0.313  Sum_probs=109.5

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcc-cCCCC-CchhHHHHHHHHHHHHHhhC-
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYK-TDKIE-PLGEAREIFKFARAQARKQA-   77 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-   77 (496)
                      |+|+|++++|+||+++||||+|||+++|++.+.++|++++..+.++...... ..... +.......+...++.+.++. 
T Consensus       167 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (310)
T d1wdka4         167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG  246 (310)
T ss_dssp             HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhhhhcc
Confidence            5789999999999999999999999999999999999999864332222111 11111 11111223446666777665 


Q ss_pred             CCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCC
Q 010966           78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGV  137 (496)
Q Consensus        78 ~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~  137 (496)
                      ++||||.+++++|+.+.+.+++++|+.|++.|.+|+.||++++++++|++||+++|.++.
T Consensus       247 ~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~  306 (310)
T d1wdka4         247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKV  306 (310)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Confidence            489999999999999999999999999999999999999999999999999998886553

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=5.5e-16  Score=135.88  Aligned_cols=145  Identities=17%  Similarity=0.115  Sum_probs=115.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      |||+|||+|.||++|+..|.++|++|+++++++++.+...+.          .|             +..+.+. +.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc----------cc-------------eeeechhhhhhhc
Confidence            589999999999999999999999999999999877654321          12             2233444 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCe-EEEEeCCCCCH
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQTSP  305 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~~t~~  305 (496)
                      ||+||.||+.+  ..    .++.+.+.++.+++|.+++++++++.+.+....+++..+|+.|+..... .-+..+..+++
T Consensus        58 ~dvIilavkp~--~~----~~vl~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIKPQ--LF----ETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSCGG--GH----HHHHTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecchH--hH----HHHhhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            99999999642  33    3444556788899999999999999998877778999999888876544 44667888899


Q ss_pred             HHHHHHHHHHHHcCCc
Q 010966          306 QVIVDLLDIGKKIKKT  321 (496)
Q Consensus       306 e~~~~~~~l~~~lGk~  321 (496)
                      +..+.+.++++.+|+.
T Consensus       132 ~~~~~v~~l~~~~G~~  147 (152)
T d2ahra2         132 ELQARVRDLTDSFGST  147 (152)
T ss_dssp             HHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHhCCCE
Confidence            9999999999999974

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=1.3e-15  Score=134.78  Aligned_cols=152  Identities=16%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      |||+|||+|.||.+||.+|+++||+|++||++++.++...+           .+             .....+. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------hh-------------hhhcccHHHHHhC
Confidence            58999999999999999999999999999999998776432           22             1223333 45789


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccC-cC--CCCCeEEEE
Q 010966          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFS-PA--HVMPLLEIV  298 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~-P~--~~~~lveiv  298 (496)
                      ||+||.|||.+.+++.-++  ..+.+.+.+++++++.+++.+  ..++++.+.. ..+|+...... |.  ...++.-++
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~  136 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  136 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence            9999999998877665554  347788888988876544333  2355555532 33444443321 21  234566666


Q ss_pred             eCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      .+   +++.++.++++++.+|+..++++
T Consensus       137 gG---~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         137 GG---DKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cC---CHHHHHHHHHHHHHhcCceEECC
Confidence            66   68999999999999999888764

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=4.1e-17  Score=152.45  Aligned_cols=203  Identities=15%  Similarity=0.146  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCCh--hhHHHHH------HHHhCCCcEEEEeCCHHHH-HHHH
Q 010966          117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL--MGSGIAT------ALILSNYPVILKEVNEKFL-EAGI  187 (496)
Q Consensus       117 ~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~--mG~~iA~------~la~~G~~V~l~d~~~~~~-~~~~  187 (496)
                      ++..++..|..-...++..+.+.    ..+..++.|+|+|.  ||.+|+.      +|+..|+.|++.|.+++.. +.+.
T Consensus        14 ~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~   89 (242)
T d2b0ja2          14 HAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHL   89 (242)
T ss_dssp             HHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHH
T ss_pred             hhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHh
Confidence            45556666654433333233221    22356788999997  9999988      6899999999999998654 3332


Q ss_pred             H--------HHHHHHHHHHHcCCCCHHHHHhhh----cceecccC-cccccCCCEEEEeccCChHHHHHHHHHHHhhCCC
Q 010966          188 G--------RVRANLQSRVKKGKMTQEKFEKTI----SLLTGVLD-YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPP  254 (496)
Q Consensus       188 ~--------~i~~~~~~~~~~g~~~~~~~~~~~----~~i~~~~~-~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~  254 (496)
                      .        .++..+.+..+....++...-.++    ..++.++| .+.+++||+||+|+|+. +.+.++++++.+++++
T Consensus        90 ~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~~  168 (242)
T d2b0ja2          90 SGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPE  168 (242)
T ss_dssp             TTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCT
T ss_pred             cCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCCC
Confidence            2        222333333333322211110111    12444555 47799999999999965 5788999999999999


Q ss_pred             CeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEe
Q 010966          255 HCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV  325 (496)
Q Consensus       255 ~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v  325 (496)
                      ++|+++.+|..+  ..++.+.+.. +.++++.||++++.....+.++.+ .++++.++.+.++++.+|+.++++
T Consensus       169 g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         169 GAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             TCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CcEEEecCCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            999976554332  3466666653 568999999998876665555443 579999999999999999998876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=1.8e-14  Score=125.95  Aligned_cols=139  Identities=21%  Similarity=0.221  Sum_probs=106.6

Q ss_pred             cccceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          144 PRRVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       144 ~~~~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ...|+||+||| +|.||++||..|.++||+|++||++++....                                    .
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~------------------------------------~   49 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------------S   49 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH------------------------------------H
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc------------------------------------h
Confidence            45688999999 8999999999999999999999998653221                                    1


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCC----CCCeEE
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH----VMPLLE  296 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~----~~~lve  296 (496)
                      .+.++|+++.++|..  ....++.++.+.++++++++..+|+.+  ...+.+.  .+.+|++.||+..+.    ....+.
T Consensus        50 ~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~~~v  125 (152)
T d2pv7a2          50 ILANADVVIVSVPIN--LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVVV  125 (152)
T ss_dssp             HHTTCSEEEECSCGG--GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEEE
T ss_pred             hhhhccccccccchh--hheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCcEEE
Confidence            246799999999855  455788899999999999987766543  2344443  356899999986443    235666


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEE
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIV  324 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~  324 (496)
                      ++++  .+++.++.+.++++.+|...+.
T Consensus       126 ~~~g--~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         126 RCDG--RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             EecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence            6665  3567889999999999987764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.55  E-value=2.3e-14  Score=126.78  Aligned_cols=152  Identities=16%  Similarity=0.208  Sum_probs=105.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      |+||+|||+|.||++||.+|+++||+|.+||++++..+...           ..+.            ....+..+.+..
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-----------~~~~------------~~~~~~~e~~~~   57 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA------------SAARSARDAVQG   57 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC------------EECSSHHHHHTS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-----------hhhc------------cccchhhhhccc
Confidence            57999999999999999999999999999999998876543           1221            111222356889


Q ss_pred             CCEEEEeccCChHHHHHHHH---HHHhhCCCCeeEeccCCcccH---HHHHhhhc-CCCeeeeccccC-cC--CCCCeEE
Q 010966          227 VDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTIDL---NLIGERTY-SKDRIVGAHFFS-PA--HVMPLLE  296 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~---~l~~~~~~~~il~sntS~~~~---~~la~~~~-~~~r~ig~hf~~-P~--~~~~lve  296 (496)
                      +|+|+.|++.+..++ .++.   .+...+.++.+++..+ +.++   .++++.+. ...+|+..+..- |.  ....++-
T Consensus        58 ~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid~s-t~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          58 ADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLECS-TIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             CSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             cCeeeecccchhhHH-HHHhccccccccCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            999999999876654 4543   2666778888776433 3333   35555553 233455443322 21  2345666


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      ++.+   ++++++.++++++.+|+..++++
T Consensus       136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVGG---DAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence            6665   78899999999999999888764

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-13  Score=129.97  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|++|+++||||+|||++++++++.++|++++..+ |.                                  
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~~----------------------------------  206 (258)
T d2fw2a1         162 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-AI----------------------------------  206 (258)
T ss_dssp             HHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             hhccCcccccccccccccccccccccccccccchhhhhhhhhh-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|+
T Consensus       207 -a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         207 -VLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence             234688888888888899999999999999999999999999999998764

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=99.34  E-value=5.8e-13  Score=127.47  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=88.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||+.++|+||+++||||+|+|++++++.|.++|++++..+ |.                                  
T Consensus       164 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  208 (269)
T d1nzya_         164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP-TH----------------------------------  208 (269)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             ccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhh-HH----------------------------------
Confidence            4789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~  134 (496)
                       +...+|+.++.....+++++++.|.+.+..++.++++++++++|++||++++.
T Consensus       209 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~  261 (269)
T d1nzya_         209 -LQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRP  261 (269)
T ss_dssp             -HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCC
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcC
Confidence             23378899999989999999999999999999999999999999999988763

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=6.7e-13  Score=125.76  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=87.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|++|+++||||+|+|++++.+.+.+++++++..+ |.                                  
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~-~~----------------------------------  201 (253)
T d1uiya_         157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-PT----------------------------------  201 (253)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HhhcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccc-hH----------------------------------
Confidence            5789999999999999999999999999999999999999863 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++.....++++++..|...+..++.|+|++|++++|++||+|+
T Consensus       202 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         202 -SLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             -HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence             334789999999999999999999999999999999999999999998764

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.9e-12  Score=123.01  Aligned_cols=96  Identities=21%  Similarity=0.251  Sum_probs=87.3

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|+|++++|+||+++||||+|++++++.+.+.+++.+++..+ |.                                  
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~-~~----------------------------------  205 (260)
T d1mj3a_         161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-KI----------------------------------  205 (260)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-HH----------------------------------
T ss_pred             HHHcCcccCchhhccCCCceeeecccccccccccccccccchh-hH----------------------------------
Confidence            5789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+|+
T Consensus       206 -a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~  256 (260)
T d1mj3a_         206 -IVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN  256 (260)
T ss_dssp             -HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence             334789999999999999999999999999999999999999999998765

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=1.9e-12  Score=123.42  Aligned_cols=95  Identities=16%  Similarity=0.059  Sum_probs=81.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|||++++++.+.++|++++..+ |.                                  
T Consensus       167 l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  211 (263)
T d1wz8a1         167 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP-KE----------------------------------  211 (263)
T ss_dssp             HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             hcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccH-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       +...+|++++....... +.++.|...+..++.|+|++|++++|++||+|+
T Consensus       212 -al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~  261 (263)
T d1wz8a1         212 -ALHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPE  261 (263)
T ss_dssp             -HHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCC
Confidence             23368888887766544 568899999999999999999999999998764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.28  E-value=5.7e-12  Score=112.55  Aligned_cols=151  Identities=9%  Similarity=0.016  Sum_probs=99.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      .+|+|||+|.||.+||..|+++||+|++||+++++++...+           .+.....    ...-....+..+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~~~----~~~a~~~~~~~~~~~~~   67 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKGTK----VLGAHSLEEMVSKLKKP   67 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTTSS----CEECSSHHHHHHHBCSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hcccccc----ccchhhhhhhhhhhccc
Confidence            47999999999999999999999999999999998876532           2210000    00000011112457889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--HHHHhhhcCCCeeeeccccC-cCC-------CCCeEEE
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFS-PAH-------VMPLLEI  297 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--~~la~~~~~~~r~ig~hf~~-P~~-------~~~lvei  297 (496)
                      |.+|.+++....+ .+++..+.+.+.++++++..++.-+.  .++++.+..    .|.+|.. |+.       ... .-+
T Consensus        68 ~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~----~g~~~ldapvsGg~~~A~~G~-~~~  141 (176)
T d2pgda2          68 RRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD----KGILFVGSGVSGGEDGARYGP-SLM  141 (176)
T ss_dssp             CEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH----TTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred             ceEEEecCchHHH-HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHh----cCCceeccccccCcccccCCc-EEE
Confidence            9999999987655 45778888899999888755443332  245554432    1444442 322       123 224


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCce
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTP  322 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~  322 (496)
                      +.+   ++++++.++++++.++...
T Consensus       142 ~gG---~~~~~~~~~~il~~~~~kv  163 (176)
T d2pgda2         142 PGG---NKEAWPHIKAIFQGIAAKV  163 (176)
T ss_dssp             EEE---CTTTHHHHHHHHHHHSCBC
T ss_pred             cCC---CHHHHHHHHHHHHHHhccc
Confidence            444   6778899999999999764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.27  E-value=6e-12  Score=109.62  Aligned_cols=149  Identities=14%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |||+|||+|.||.+||..|+++|++|+++|++++........         ..+             + ..+..+.+++|
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---------~~~-------------~-~~~~~e~~~~~   57 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---------TVG-------------V-TETSEEDVYSC   57 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------HHT-------------C-EECCHHHHHTS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---------ccc-------------c-cccHHHHHhhc
Confidence            589999999999999999999999999999887655442210         001             1 11223557899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeE-eccCCcccHHHHHhhhcCCCeeeeccccCcCC--CCCeEEEEeCCCCC
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS  304 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il-~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~t~  304 (496)
                      |+||.|||.+...  ++..++..... ..++ +|+.|.-...++++.+.. .+++....+.+++  .....-++.|+.  
T Consensus        58 diIi~~v~~~~~~--~~~~~~~~~~~-~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~~--  131 (152)
T d1i36a2          58 PVVISAVTPGVAL--GAARRAGRHVR-GIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGRD--  131 (152)
T ss_dssp             SEEEECSCGGGHH--HHHHHHHTTCC-SEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEESTT--
T ss_pred             CeEEEEecCchHH--HHHHhhcccCC-ceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECCC--
Confidence            9999999976432  44555555543 3333 333333345677777643 3566666554432  122233566653  


Q ss_pred             HHHHHHHHHHHHHcCCceEEecCcc
Q 010966          305 PQVIVDLLDIGKKIKKTPIVVGNCT  329 (496)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~v~v~d~~  329 (496)
                      .+.++    .++.+|.....+++.|
T Consensus       132 ~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         132 AEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             HHHHH----GGGGGTCEEEECSSST
T ss_pred             HHHHH----HHHHcCCeeeEcCCCC
Confidence            33333    3688898888887654

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-12  Score=122.27  Aligned_cols=96  Identities=20%  Similarity=0.267  Sum_probs=80.4

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHH----HhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----LDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ   76 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a----~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (496)
                      |++||++++|++|+++||||+|||++++.+++.++|    ++++..+ |.                              
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~-p~------------------------------  211 (266)
T d1hzda_         163 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQG-PV------------------------------  211 (266)
T ss_dssp             HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSC-HH------------------------------
T ss_pred             hhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCC-hH------------------------------
Confidence            578999999999999999999999987665555555    5554431 21                              


Q ss_pred             CCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        77 ~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                           |...+|++++.....++.++++.|...+..++.|+|++|++++|++||+|+
T Consensus       212 -----a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~  262 (266)
T d1hzda_         212 -----AMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPR  262 (266)
T ss_dssp             -----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCC
T ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence                 344789999999989999999999999999999999999999999998754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.25  E-value=2.8e-11  Score=108.11  Aligned_cols=155  Identities=13%  Similarity=0.055  Sum_probs=101.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC----ccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD----YES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~  223 (496)
                      |||+|||+|.||.+||.+|+++||+|++||+++++.+...+           .+.....     ........+    ...
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-----------ANASAPF-----AGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HTTTSTT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCCcccc-----ccchhhhhhhhHHHHh
Confidence            58999999999999999999999999999999998877542           2221110     011111122    124


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhc-CCCeeeeccccCcC---CCCCeEEE
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY-SKDRIVGAHFFSPA---HVMPLLEI  297 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~-~~~r~ig~hf~~P~---~~~~lvei  297 (496)
                      +..++.++++++....+. .++..+...+.++++++..++..+  ..++++.+. ..-+++....+..+   .... ..+
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~m  143 (178)
T d1pgja2          66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFF  143 (178)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred             cccceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEE
Confidence            577889999998776544 556777778888887765443332  235555553 33455554333221   1122 334


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceE
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPI  323 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v  323 (496)
                      +.+   ++++++.++++++.+++.+.
T Consensus       144 vgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         144 PGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             eeC---CHHHHHHHHHHHHHHhcccc
Confidence            555   78999999999999998765

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=3.7e-12  Score=122.09  Aligned_cols=97  Identities=16%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCch-HHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQ-LVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~-l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (496)
                      |+++|++++|+||+++||||+|+|+++ +.+++.+++++++..+ |.                                 
T Consensus       172 ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~-p~---------------------------------  217 (275)
T d1dcia_         172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-PV---------------------------------  217 (275)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-HH---------------------------------
T ss_pred             ccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc-HH---------------------------------
Confidence            467899999999999999999998765 6678889999999862 32                                 


Q ss_pred             CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (496)
Q Consensus        80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~  133 (496)
                        |...+|+.++.....+++++++.|...+..++.|+|++|++++|++||++|.
T Consensus       218 --a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~  269 (275)
T d1dcia_         218 --AVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKS  269 (275)
T ss_dssp             --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGG
T ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence              3347888888888899999999999999999999999999999999988765

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=3.1e-11  Score=105.50  Aligned_cols=143  Identities=15%  Similarity=0.167  Sum_probs=99.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (496)
                      ||+|||+|.||.+||.+|+++|+.| +|++++++.....+.          .+              ......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~----------~~--------------~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE----------FG--------------SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH----------HC--------------CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH----------cC--------------Cccccccccccee
Confidence            7999999999999999999999866 577776665443211          01              1133456678899


Q ss_pred             EEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCC-------CCCeEEE
Q 010966          229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAH-------VMPLLEI  297 (496)
Q Consensus       229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~-------~~~lvei  297 (496)
                      ++|.++|.+.++. .+...+.+...++.+++.. |+.++   .++++.+...    |.+|. .|+.       ...|.-+
T Consensus        57 ~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid~-sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~L~~~  130 (156)
T d2cvza2          57 VIFTCLPTTREVY-EVAEALYPYLREGTYWVDA-TSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGTLTVM  130 (156)
T ss_dssp             EEEECCSSHHHHH-HHHHHHTTTCCTTEEEEEC-SCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTCEEEE
T ss_pred             EEEecccchhhhh-hhhcccccccccccccccc-ccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCCEEEE
Confidence            9999999876654 4567787888888877643 33333   3666665421    45555 3443       3567766


Q ss_pred             EeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (496)
Q Consensus       298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~  326 (496)
                      +.+   ++++++.+++++ .+++.+++++
T Consensus       131 vgG---~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2         131 LGG---PEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             EES---CHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             EeC---CHHHHHHHHHHH-HhcCcCEEeC
Confidence            666   799999999998 5888888875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=2.1e-12  Score=112.63  Aligned_cols=142  Identities=7%  Similarity=-0.071  Sum_probs=90.8

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCE
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM  229 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  229 (496)
                      |+|||+|+||.+|+..|...++.+.+|+|++++++...+           .+.            ....+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~~------------~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VYG------------GKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HTC------------CCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------ccc------------ccccchhhhhccCcE
Confidence            799999999999999886655556799999998877542           111            112334466899999


Q ss_pred             EEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC--------CCCeEEEEeCC
Q 010966          230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMPLLEIVRTN  301 (496)
Q Consensus       230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--------~~~lveiv~~~  301 (496)
                      ||.|||.+.  -.+++.++   ..++.++++.+++.+++.+..     ....+.||..++.        ...++-.+.+ 
T Consensus        59 Vil~v~d~~--i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-  127 (153)
T d2i76a2          59 VFVIVPDRY--IKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLEG-  127 (153)
T ss_dssp             EEECSCTTT--HHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEECC-
T ss_pred             EEEeccchh--hhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEeC-
Confidence            999999753  23444433   247888888777777654432     2345677753221        1122223333 


Q ss_pred             CCCHHHHHHHHHHHHHcCCceEEecC
Q 010966          302 QTSPQVIVDLLDIGKKIKKTPIVVGN  327 (496)
Q Consensus       302 ~t~~e~~~~~~~l~~~lGk~~v~v~d  327 (496)
                        +++.++.++++++.+|..++++.+
T Consensus       128 --d~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         128 --DERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             --CTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             --CHHHHHHHHHHHHHHCCcEEEeCC
Confidence              567889999999999999988853

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.2e-11  Score=117.60  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=79.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||+.++|+||+++||||+|+|++++.+.+.++|++++..+ |.                                  
T Consensus       160 ~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-~~----------------------------------  204 (261)
T d1ef8a_         160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-PL----------------------------------  204 (261)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             ccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcC-cH----------------------------------
Confidence            4789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966           81 THPIVCIDVVEAGVVSGPR--AGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~--~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~  132 (496)
                       |...+|++++........  ..++.+...+..++.|+|++|++++|++||+|+
T Consensus       205 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~  257 (261)
T d1ef8a_         205 -AIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPN  257 (261)
T ss_dssp             -HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             -HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCc
Confidence             234688888877665543  445555667888999999999999999998755

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=1.3e-11  Score=119.52  Aligned_cols=99  Identities=16%  Similarity=0.172  Sum_probs=80.8

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|+||+++||||+|+|++++++.+.+++++++..+ |.                                  
T Consensus       195 llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~-~~----------------------------------  239 (297)
T d1q52a_         195 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-PQ----------------------------------  239 (297)
T ss_dssp             HHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             ccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCC-HH----------------------------------
Confidence            5789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCC
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGV  137 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~  137 (496)
                       |...+|++++... .++.+....|.+.+..++.|++++|++++|++||+| +|.+.
T Consensus       240 -a~~~~K~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P-~f~~~  293 (297)
T d1q52a_         240 -AQRMLKFAFNLLD-DGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPP-DWSPF  293 (297)
T ss_dssp             -HHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCC-CCTTS
T ss_pred             -HHHHHHHHHHHhh-cChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCC-CCCCC
Confidence             2336777776643 455556667888888999999999999999999875 44443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.16  E-value=3.2e-11  Score=107.82  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~-~~~  224 (496)
                      +||+|||+|.||.++|..|+++||+|++||++++.++...+           .+....  ............+++. +.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD-----------RGAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            69999999999999999999999999999999988776432           111000  0000011112234444 458


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s  260 (496)
                      ++||+||.|+|...  ...++.++.+++.++++|..
T Consensus        71 ~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 KDADVILIVVPAIH--HASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEE
Confidence            99999999998764  57889999999999887754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.11  E-value=3.9e-11  Score=108.17  Aligned_cols=156  Identities=14%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHhhhcceecccCcc-
Q 010966          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-KMTQEKFEKTISLLTGVLDYE-  222 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~-  222 (496)
                      ..|+||+|||+|.||.++|..|+.+|++|++|+++++.++...+.         ... ..-+.  -....++..+++++ 
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~---------~~n~~yl~~--~~l~~~i~~t~~l~~   73 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK---------RENVLFLKG--VQLASNITFTSDVEK   73 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH---------TBCTTTSTT--CBCCTTEEEESCHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc---------ccccccccc--cccccccccchhhhh
Confidence            457899999999999999999999999999999999887654321         111 10000  12235688888875 


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhh-----CCCCeeEeccCCcc------cHHHHHhhhcCCCeeeeccccCcC--
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-----CPPHCILASNTSTI------DLNLIGERTYSKDRIVGAHFFSPA--  289 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-----~~~~~il~sntS~~------~~~~la~~~~~~~r~ig~hf~~P~--  289 (496)
                      .+++||+||.|||..  ..+.+++++.++     ..++.++++.+-++      .++++.... .+..-++. .-.|-  
T Consensus        74 a~~~ad~iiiavPs~--~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~-~~~~~~~v-lsGP~~A  149 (189)
T d1n1ea2          74 AYNGAEIILFVIPTQ--FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEF-LPSPLLSV-LAGPSFA  149 (189)
T ss_dssp             HHTTCSCEEECSCHH--HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTT-SCGGGEEE-EESSCCH
T ss_pred             ccCCCCEEEEcCcHH--HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHH-hcccceEE-EecCCcH
Confidence            489999999999854  466777776543     34566666554444      444443322 11111111 01221  


Q ss_pred             ----CCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 010966          290 ----HVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (496)
Q Consensus       290 ----~~~~lveiv~~~~t~~e~~~~~~~l~~~  317 (496)
                          ...|.-.++.+  .+.+..+.+++++..
T Consensus       150 ~Ev~~~~pt~~viAs--~~~~~a~~i~~lfst  179 (189)
T d1n1ea2         150 IEVATGVFTCVSIAS--ADINVARRLQRIMST  179 (189)
T ss_dssp             HHHHTTCCEEEEEEC--SSHHHHHHHHHHHSC
T ss_pred             HHHHcCCCcEEEEEe--CCHHHHHHHHHHhCC
Confidence                12344444444  477777777777754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.06  E-value=1.2e-10  Score=104.22  Aligned_cols=152  Identities=16%  Similarity=0.200  Sum_probs=92.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcceecccCcc-c
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-S  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~  223 (496)
                      |||+|||+|.||.++|..|+.+|++|++|.++  ++.++..            ..++..+. ........+..+++++ .
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i------------~~~~~~~~~~~~~~~~~i~~~~~~~~~   68 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSI------------SAGREHPRLGVKLNGVEIFWPEQLEKC   68 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHH------------HTTCCBTTTTBCCCSEEEECGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHH------------hhhhhhhhhcchhccccccccccHHHH
Confidence            69999999999999999999999999999874  4333332            11111000 0000112355566664 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc-------ccHHHHHhhhc-C-CCeeeeccccCcC-----
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST-------IDLNLIGERTY-S-KDRIVGAHFFSPA-----  289 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~-------~~~~~la~~~~-~-~~r~ig~hf~~P~-----  289 (496)
                      ++++|+||.|||..  ..+.+++++.++++++.++.++.+.       +.+.++..... . +.++.-+  ..|-     
T Consensus        69 ~~~ad~Ii~avps~--~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vl--sGP~~A~Ei  144 (180)
T d1txga2          69 LENAEVVLLGVSTD--GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAI--TGPAIAREV  144 (180)
T ss_dssp             HTTCSEEEECSCGG--GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEE--ESSCCHHHH
T ss_pred             Hhccchhhcccchh--hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEE--cCCccHHHH
Confidence            89999999999954  5779999999999888777654322       23444444332 1 1121111  0121     


Q ss_pred             -CCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 010966          290 -HVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (496)
Q Consensus       290 -~~~~lveiv~~~~t~~e~~~~~~~l~~~  317 (496)
                       ...|.-.++.+  .+.+..+.+.++|..
T Consensus       145 ~~~~pt~~vias--~~~~~a~~i~~~f~~  171 (180)
T d1txga2         145 AKRMPTTVVFSS--PSESSANKMKEIFET  171 (180)
T ss_dssp             HTTCCEEEEEEC--SCHHHHHHHHHHHCB
T ss_pred             HcCCCcEEEEEc--CCHHHHHHHHHHHCC
Confidence             12344445554  367777777777754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.04  E-value=3.1e-09  Score=96.49  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHH------Hhhhcceeccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKF------EKTISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~------~~~~~~i~~~~  219 (496)
                      |||+|||+|.+|.++|..|+.+|++|++||.|++.++...            .|...  +...      .....++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln------------~g~~p~~e~~~~~~l~~~~~~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN------------QGKSPIVEPGLEALLQQGRQTGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH------------TTCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc------------ccCCcccchhhhhhhhhhhcccccccCC
Confidence            6899999999999999999999999999999999877643            22211  0001      11224566777


Q ss_pred             Ccc-cccCCCEEEEeccCC--------hHHHHHHHHHHHhh---CCCCeeEeccCCcccH---HHHHhh-hc-CCCeeee
Q 010966          220 DYE-SFKDVDMVIEAIIEN--------VSLKQQIFADLEKY---CPPHCILASNTSTIDL---NLIGER-TY-SKDRIVG  282 (496)
Q Consensus       220 ~~~-~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~---~~~~~il~sntS~~~~---~~la~~-~~-~~~r~ig  282 (496)
                      +++ .+++||+++.|||..        ...-..+...+...   ..++.+++.. |++++   .++... +. ......+
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~-STv~pGtt~~~~~~~l~~~~~~~~~  147 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAG  147 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeec-cccCCcchhhhhhhhhhcccccccc
Confidence            764 589999999999863        22233444444433   3456555432 33332   222211 10 0001111


Q ss_pred             ccc---cCcCCCCC----------eEEEEeCCCCCHHHHHHHHHHHHHcCCceE
Q 010966          283 AHF---FSPAHVMP----------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPI  323 (496)
Q Consensus       283 ~hf---~~P~~~~~----------lveiv~~~~t~~e~~~~~~~l~~~lGk~~v  323 (496)
                      ..|   ++|-...+          -.-|+.+  .+++..+.+.++++.+....+
T Consensus       148 ~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii  199 (202)
T d1mv8a2         148 VDFGVGTNPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPII  199 (202)
T ss_dssp             TTBEEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEE
T ss_pred             ccccchhhhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeE
Confidence            111   23322211          1113444  468899999999998876444

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.03  E-value=6.2e-10  Score=95.69  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      -+||+|||+|.+|.++|..++..|.  +|+++|++++.++.....+.+..              .........+.+++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~--------------~~~~~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ--------------AFTAPKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG--------------GGSCCCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccc--------------cccCCceEeeccHHHh
Confidence            4699999999999999999999884  89999999987654222221100              0011234456789999


Q ss_pred             cCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE-eccCCcccHHHHHhhhcC-CCeeeec
Q 010966          225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       225 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il-~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      ++||+||.++..              +..+.+++..++.++.++..++ +||...+-...+...... +.|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            999999998621              2335566677788776554432 355433323334444444 4678775

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.02  E-value=6.8e-10  Score=95.73  Aligned_cols=123  Identities=19%  Similarity=0.216  Sum_probs=79.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|.++|..++..|+  +++++|++++.++.....+.+.      ....       .......+.++++++
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~------~~~~-------~~~~~~~~~d~~~l~   73 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG------KVFA-------PKPVDIWHGDYDDCR   73 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------TTSS-------SSCCEEEECCGGGTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC------cccc-------CCCeEEEECCHHHhc
Confidence            599999999999999999999886  8999999998765433222211      0000       012223456889999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeE-eccCCcccHHHHHhhhcC-CCeeeec
Q 010966          226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il-~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      +||+||.+.-              ++..+.+++..++.+++++..++ +||...+-..-+.+..+. |.|++|+
T Consensus        74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            9999998762              23446667777888887554433 344332222223333333 4788875

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.98  E-value=1.2e-09  Score=93.62  Aligned_cols=123  Identities=21%  Similarity=0.250  Sum_probs=77.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|.++|..++..|.  +++++|++++.++.....+.....            ......++..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~------------~~~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc------------hhcccceEEecCCHHHhc
Confidence            589999999999999999999985  899999999876543222211110            011123455567889999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEe--ccCCcccHHHHHhhhcC-CCeeeec
Q 010966          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       226 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~--sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      +||+||.+.  |.            +..+.+++...+.++++ ++++.  ||....-..-+...... +.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            999999986  22            23355666677888875 55443  44221111122222333 4688875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.96  E-value=2.8e-09  Score=91.03  Aligned_cols=123  Identities=23%  Similarity=0.321  Sum_probs=79.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .||+|||+|.+|+++|..++.+|+  +++++|++++.++.-...+++..      ..       .....+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~------~~-------~~~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS------SF-------YPTVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG------GG-------STTCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc------cc-------CCCceeecCCCHHHhh
Confidence            589999999999999999999987  89999999987654332222210      00       0113455567889999


Q ss_pred             CCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeE-eccCCcccHHHHHhhhcC-CCeeeec
Q 010966          226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il-~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      +||+||.+.              ..+..+.+++..++.++.+...++ +||.--.-...+.+.... +.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            999999876              224456677777888886555433 444322211222233333 5688875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.95  E-value=1.8e-09  Score=92.31  Aligned_cols=123  Identities=16%  Similarity=0.277  Sum_probs=78.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      |||+|||+|.+|.++|..++.+|.  +++++|++++.++.-...+++...     .       -....++..+.++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~-----~-------~~~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-----G-------IDKYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH-----T-------TTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc-----c-------cCCCCccccCCCHHHhc
Confidence            699999999999999999998886  799999999886543333322110     0       00113466677899999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HH-HHhhhc-CCCeeeec
Q 010966          226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NL-IGERTY-SKDRIVGA  283 (496)
Q Consensus       226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~-la~~~~-~~~r~ig~  283 (496)
                      +||+||.+..              .+..+.+++..++.++. |+++++..|....+ .. +..... .|.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            9999998762              12234445556666665 55655544443322 22 223333 35678775

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.2e-10  Score=106.42  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=75.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+++|++++|+||+++||||+|+|+++|++++.++|++++..+ |.                                  
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~----------------------------------  206 (245)
T d2f6qa1         162 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP-PN----------------------------------  206 (245)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC-HH----------------------------------
T ss_pred             hcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            5799999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS  120 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~  120 (496)
                       +...+|++++.....++++.++.|.+.+..++.|+|++|
T Consensus       207 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         207 -ALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             -HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             -HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence             234788999988888899999999999999999999985

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.88  E-value=7.2e-09  Score=89.99  Aligned_cols=121  Identities=20%  Similarity=0.339  Sum_probs=76.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.+..-...+.+.      .       .......+....++++++
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~------~-------~~~~~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG------S-------LFLQTPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT------G-------GGCCCSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc------c-------cccCCCeEEeccchhhcc
Confidence            599999999999999999999998  8999999998765433332210      0       000012334566789999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHH-HhhhcCC-Ceeee
Q 010966          226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLI-GERTYSK-DRIVG  282 (496)
Q Consensus       226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~l-a~~~~~~-~r~ig  282 (496)
                      +||+||.+.-              .+..+.+++..++.+..+ +.+++..|.... +..+ .+..+.| +|++|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998751              133355566677777755 444433333332 2223 3333433 67765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=8e-09  Score=87.98  Aligned_cols=120  Identities=25%  Similarity=0.341  Sum_probs=75.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-eecccCcccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  224 (496)
                      +||+|||+|.+|.++|..++.+|.  ++.++|++++.++.....+.+.               .....+ ...+.+++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~---------------~~~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG---------------TPFTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH---------------GGGSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc---------------ccccccccccCCcHHHh
Confidence            599999999999999999998885  8999999998766433222211               111112 2234578899


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHH-HhhhcC-CCeeeec
Q 010966          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLI-GERTYS-KDRIVGA  283 (496)
Q Consensus       225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~l-a~~~~~-~~r~ig~  283 (496)
                      ++||+||.+.-              .+..+.+++...+.++++.. ++...|.... +..+ .+.... |.|++|.
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~a-ivivvtNPvd~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDS-IVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTC-EEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCc-EEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence            99999999861              13345566667788877544 4433332222 2222 223332 4677763

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.86  E-value=1e-08  Score=87.87  Aligned_cols=121  Identities=20%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+..    ..         ........+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~----~~---------~~~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM----AN---------LEAHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----GG---------SSSCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc----cc---------cCCccceeccCHHHhc
Confidence            699999999999999999998885  89999999987654332222111    00         0011223456789999


Q ss_pred             CCCEEEEeccC------------------ChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHHH-hhhcC-CCeeee
Q 010966          226 DVDMVIEAIIE------------------NVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIG-ERTYS-KDRIVG  282 (496)
Q Consensus       226 ~aDlVIeav~e------------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~la-~~~~~-~~r~ig  282 (496)
                      +||+||.+...                  +..+.+++...+.+++ |+++++..|.... +..+. ...+. +.|++|
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG  145 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence            99999987531                  1233445556667665 5565544443332 22322 23333 467776

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.82  E-value=8.4e-09  Score=88.05  Aligned_cols=122  Identities=18%  Similarity=0.306  Sum_probs=77.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||+|||+|.+|.++|..++.++. ++.++|++++.++.....+....            .......+++.+.+++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~------------~~~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccc------------cccCCCCEEEecCcHHHhcC
Confidence            599999999999999999998886 99999999886655333222111            01111234666788999999


Q ss_pred             CCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhh-cC-CCeeee
Q 010966          227 VDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERT-YS-KDRIVG  282 (496)
Q Consensus       227 aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~-~~-~~r~ig  282 (496)
                      +|+||.+...              +..+.+++..++.++.+ +++++..|....+ ..+...+ +. +.|++|
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvDv~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998721              22244566667777655 4545444433322 3333322 32 456666

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.75  E-value=8e-09  Score=88.14  Aligned_cols=121  Identities=23%  Similarity=0.327  Sum_probs=71.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-eecccCcccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  224 (496)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.....+        ....       ..... ...+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl--------~~~~-------~~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGL-------PFMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSC-------CCTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeee--------ccCc-------ccCCCeeEeeCcHHHh
Confidence            489999999999999999999987  8999999998654322111        1111       01111 2234578899


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeE-eccCCcccHHHHHhhhcC-CCeeeec
Q 010966          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA  283 (496)
Q Consensus       225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il-~sntS~~~~~~la~~~~~-~~r~ig~  283 (496)
                      ++||+||.+.-              .+..+.+++...+.++.++..++ +||....-...+...... +.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            99999999852              12335556666777776544322 344222211222333343 4678875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=1.4e-09  Score=95.28  Aligned_cols=104  Identities=13%  Similarity=-0.034  Sum_probs=73.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      |||+|||+|.||+.+|..|+++|++|++++++++......           ..+.    +. ........+++.+.+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~----~~-~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVET----DG-SIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECT----TS-CEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccC----Cc-cccccccccchhhhhccc
Confidence            6999999999999999999999999999999876432210           0000    00 001112223445667899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~  269 (496)
                      |+||.+++...  -.++++.+.+++.++++|.+...++...+
T Consensus        65 D~iii~vka~~--~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ceEEEeecccc--hHHHHHhhccccCcccEEeeccCcccHHH
Confidence            99999998642  45678889999999988877666665444

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.72  E-value=4.4e-08  Score=83.65  Aligned_cols=104  Identities=18%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      |||+|||+ |.+|.++|..++..|.  ++.++|++++.  ++.....+.+..   ...+  ..     ..-.+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~---~~~~--~~-----~~~~~~~~~d~~   70 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTR--SD-----ANIYVESDENLR   70 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSC--CC-----CEEEEEETTCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc---cccc--cC-----CccccCCcchHH
Confidence            58999996 9999999999999995  99999998643  222222222110   0000  00     001123345789


Q ss_pred             cccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          223 SFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       223 ~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ++++||+||.+.  |.            +..+.+++...+.++.+...+++||
T Consensus        71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVtN  123 (145)
T d1hyea1          71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITN  123 (145)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSS
T ss_pred             HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEcC
Confidence            999999999985  21            2334556667787886544333333

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.71  E-value=4.5e-09  Score=98.61  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=76.1

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |++||++++|++|+++||||+|+|++++.+.+.+++++++..+ |.                                  
T Consensus       162 lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~~----------------------------------  206 (249)
T d1sg4a1         162 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP-DH----------------------------------  206 (249)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             cccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            4789999999999999999999999999999999999999862 32                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH  123 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~  123 (496)
                       +...+|+.++......+.+.++.|.+.|..+..+++.++.+.
T Consensus       207 -a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         207 -ARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence             233678888888888889999999999999999999988764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.70  E-value=4.3e-08  Score=84.67  Aligned_cols=125  Identities=23%  Similarity=0.333  Sum_probs=77.8

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (496)
                      .-+||+|||+|..|..+|..++..++ +++++|++++.++.....+.+...   ..+         ....+..++++ ++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~---~~~---------~~~~~~~~~~~~~~   73 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTS---VVD---------TNVSVRAEYSYEAA   73 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH---HTT---------CCCCEEEECSHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcc---ccC---------CeeEEeccCchhhh
Confidence            35799999999999999999988886 899999999876654443332210   001         11234445555 56


Q ss_pred             ccCCCEEEEecc------------C-------ChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHH-HhhhcC-CCeee
Q 010966          224 FKDVDMVIEAII------------E-------NVSLKQQIFADLEKYCPPHCILASNTSTID-LNLI-GERTYS-KDRIV  281 (496)
Q Consensus       224 ~~~aDlVIeav~------------e-------~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~l-a~~~~~-~~r~i  281 (496)
                      +++||+||.+..            .       +..+.+++..++.+++++ +++...|.... +..+ .+..+. +.|++
T Consensus        74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~rVi  152 (154)
T d1pzga1          74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTNMIC  152 (154)
T ss_dssp             HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred             hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChhcEe
Confidence            899999999762            1       122455666778777655 44443333332 2222 233333 46787


Q ss_pred             ec
Q 010966          282 GA  283 (496)
Q Consensus       282 g~  283 (496)
                      |+
T Consensus       153 G~  154 (154)
T d1pzga1         153 GM  154 (154)
T ss_dssp             EC
T ss_pred             cC
Confidence            75

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=3.2e-08  Score=85.76  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=67.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      .||+|||+|.+|..+|..++..|+  +++++|++++.+......+.+.      .-..       ....+..+.++++++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~------~~~~-------~~~~~~~~~d~~~~~   86 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG------SLFL-------STPKIVFGKDYNVSA   86 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT------TTTC-------SCCEEEEESSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc------chhc-------CCCeEEeccchhhhc
Confidence            599999999999999999999987  8999999998765433333211      0000       012334466899999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +||+||.+.-              .+..+.+++...+.++. ++.+++..|..
T Consensus        87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNP  138 (159)
T d2ldxa1          87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNP  138 (159)
T ss_dssp             TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSS
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCc
Confidence            9999998762              13334444445566664 45555544443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.64  E-value=8.7e-08  Score=82.22  Aligned_cols=123  Identities=19%  Similarity=0.338  Sum_probs=77.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      .||+|||+|..|+.+|..+...+. ++.|+|++++.++.....+.+...            .......+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~------------~~~~~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNV------------MAYSNCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHH------------HHTCCCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhcc------------ccCCCcEEEecccccccCC
Confidence            599999999999999998888886 899999999876654433322110            0011123444567899999


Q ss_pred             CCEEEEecc--C----------C-------hHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHh-hhc-CCCeeeec
Q 010966          227 VDMVIEAII--E----------N-------VSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGE-RTY-SKDRIVGA  283 (496)
Q Consensus       227 aDlVIeav~--e----------~-------~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~-~~~-~~~r~ig~  283 (496)
                      +|+||.+.-  .          .       ..+.+++...+.++++ +++++..|....+ ..+.. ... .+.|++|+
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            999998862  1          1       1244555566777754 5555444433322 23332 223 35678775

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.45  E-value=1.1e-06  Score=78.71  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhhh----cceecccCc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKTI----SLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~----~~i~~~~~~  221 (496)
                      |||+|||+|.+|..+|..++ .|++|+.+|++++.++...+            |..  .+...+..+    .++..+++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~------------g~~p~~e~~l~~~~~~~~~~~~~~~~~   67 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINN------------GLSPIQDEYIEYYLKSKQLSIKATLDS   67 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHT------------TCCSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhh------------cccccchhhHHHHhhhhhhhhhccchh
Confidence            68999999999999998775 69999999999998876432            221  111122211    233444443


Q ss_pred             -ccccCCCEEEEeccCCh
Q 010966          222 -ESFKDVDMVIEAIIENV  238 (496)
Q Consensus       222 -~~~~~aDlVIeav~e~~  238 (496)
                       ....++|+|+.|+|...
T Consensus        68 ~~~~~~~~ii~v~vpt~~   85 (196)
T d1dlja2          68 KAAYKEAELVIIATPTNY   85 (196)
T ss_dssp             HHHHHHCSEEEECCCCCE
T ss_pred             hhhhhccccccccCCccc
Confidence             45789999999997643

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=1.4e-06  Score=76.31  Aligned_cols=75  Identities=20%  Similarity=0.292  Sum_probs=50.5

Q ss_pred             eEEEEEeCChhhHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      +||+|||+|..|.+.+.  .++..    +.+++++|+++++++.....+.+....   .+         ..-++..++|.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~---~~---------~~~~i~~~td~   70 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE---VG---------ADLKFEKTMNL   70 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH---TT---------CCCEEEEESCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHh---cC---------CCeEEEEeCCh
Confidence            69999999999977543  34432    469999999999887644333332211   11         11246666775


Q ss_pred             -ccccCCCEEEEec
Q 010966          222 -ESFKDVDMVIEAI  234 (496)
Q Consensus       222 -~~~~~aDlVIeav  234 (496)
                       +++++||+||.++
T Consensus        71 ~eaL~dad~Vv~~~   84 (171)
T d1obba1          71 DDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             hhcccCCCeEeeec
Confidence             5799999999875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=6.9e-07  Score=75.92  Aligned_cols=103  Identities=18%  Similarity=0.221  Sum_probs=64.3

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (496)
                      .||+|||+ |.+|.++|..++..|+  +++++|+++...+. . .        .......    ......+...++++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-D--------l~~~~~~----~~~~~~~~~~~~~~~~   66 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-D--------LSHIETR----ATVKGYLGPEQLPDCL   66 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-H--------HTTSSSS----CEEEEEESGGGHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-H--------Hhhhhhh----cCCCeEEcCCChHHHh
Confidence            38999996 9999999999999987  79999998653222 1 1        1111000    0001122323345779


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      ++||+||.+.-              .+..+.+++..++.++. |+++++..|...
T Consensus        67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPv  120 (144)
T d1mlda1          67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPV  120 (144)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCH
T ss_pred             CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCch
Confidence            99999998752              23345566777788885 455555444443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.39  E-value=1.4e-06  Score=73.66  Aligned_cols=100  Identities=16%  Similarity=0.227  Sum_probs=63.0

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcce-ecccCc
Q 010966          148 KKVAILG-GGLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL-TGVLDY  221 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~  221 (496)
                      .||+||| +|.+|..+|..+..+|+  ++.++|++.  +.++.....+.+..      .         ...+. ..+.++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~------~---------~~~~~~i~~~~~   65 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI------A---------YDSNTRVRQGGY   65 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH------T---------TTCCCEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc------c---------ccCCceEeeCCH
Confidence            4899999 69999999999999987  899999753  33322112221111      0         11111 234578


Q ss_pred             ccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          222 ESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       222 ~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +++++||+||.+.-  .            +..+.+++...+.++.+ +.+++..|.
T Consensus        66 ~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvtN  120 (142)
T d1o6za1          66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSN  120 (142)
T ss_dssp             GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCS
T ss_pred             HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEecC
Confidence            99999999998751  1            23455566666777664 455544433

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=98.34  E-value=9.4e-08  Score=88.27  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=58.6

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (496)
                      |+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.                                  
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~~----------------------------------  201 (230)
T d2a7ka1         157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-AS----------------------------------  201 (230)
T ss_dssp             HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred             cccccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence            4789999999999999999999999999999999999999862 22                                  


Q ss_pred             CcHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010966           81 THPIVCIDVVEAGVVSGPRAGLQKEAE  107 (496)
Q Consensus        81 pA~~~~k~~i~~~~~~~~~~~l~~E~~  107 (496)
                       |...+|+.+++.....+++.++.|+.
T Consensus       202 -a~~~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         202 -AFINTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence             23468888888777677777766643

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=6.9e-07  Score=77.61  Aligned_cols=72  Identities=19%  Similarity=0.111  Sum_probs=47.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHh--C----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-C
Q 010966          148 KKVAILGGGLMGSGIATALIL--S----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D  220 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~--~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~  220 (496)
                      +||+|||+|..|.+.+.....  .    +.+++++|+++++++.... +.   +.....           ...+..++ +
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~---~~~~~~-----------~~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FV---KRLVKD-----------RFKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HH---HHHHTT-----------SSEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HH---Hhhhcc-----------CceEEEecCc
Confidence            589999999999888854332  1    3589999999998764322 11   111111           12233334 4


Q ss_pred             cccccCCCEEEEec
Q 010966          221 YESFKDVDMVIEAI  234 (496)
Q Consensus       221 ~~~~~~aDlVIeav  234 (496)
                      ++++++||+||.++
T Consensus        66 ~~~l~~aDvVVita   79 (162)
T d1up7a1          66 EGAVVDAKYVIFQF   79 (162)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             ccccCCCCEEEEec
Confidence            67899999999986

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=5.6e-07  Score=76.55  Aligned_cols=103  Identities=18%  Similarity=0.263  Sum_probs=63.0

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      |||+||| +|.+|.++|..++.. +  .++.++|+++.....+. .+        ......     .....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~-Dl--------~h~~~~-----~~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV-DL--------SHIPTA-----VKIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH-HH--------HTSCSS-----CEEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH-HH--------HCCccc-----cCCcEEEcCCCccc
Confidence            6999999 599999999988643 4  59999999754221111 11        111000     00112333556888


Q ss_pred             ccCCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          224 FKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       224 ~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                      ++++|+||.+.  |            .+..+.+++..++.++.++. +++..|...
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~a-ivivvtNPv  121 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKA-CIGIITNPV  121 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECSSSH
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCc-EEEEccCCc
Confidence            99999999876  2            13345566677788877554 444344333

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.23  E-value=7.2e-07  Score=78.82  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=39.6

Q ss_pred             eEEEEE-eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 010966          148 KKVAIL-GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR  191 (496)
Q Consensus       148 ~kV~VI-GaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  191 (496)
                      |||+|| |+|.||.+||..|+++||+|++|+|++++++...+.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            689999 78999999999999999999999999999887765543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=1.3e-05  Score=69.43  Aligned_cols=75  Identities=21%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             eEEEEEeCChhhHHHHH--HHHhC-C---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGGLMGSGIAT--ALILS-N---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~--~la~~-G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      .||+|||+|..|.+.+.  .+... .   -+|+|+|+++++++.....+......   .+         ...++..++|+
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~d~   71 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE---KA---------PDIEFAATTDP   71 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH---HC---------TTSEEEEESCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH---hC---------CCcceEecCCh
Confidence            59999999999876443  33322 2   38999999999877543333222110   01         11245556665


Q ss_pred             -ccccCCCEEEEec
Q 010966          222 -ESFKDVDMVIEAI  234 (496)
Q Consensus       222 -~~~~~aDlVIeav  234 (496)
                       +++++||+||.++
T Consensus        72 ~eal~~AD~Vvita   85 (167)
T d1u8xx1          72 EEAFTDVDFVMAHI   85 (167)
T ss_dssp             HHHHSSCSEEEECC
T ss_pred             hhccCCCCEEEECC
Confidence             6799999999987

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.13  E-value=3.4e-07  Score=85.44  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=40.2

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~   42 (496)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..
T Consensus       169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  210 (249)
T d1szoa_         169 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK  210 (249)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTS
T ss_pred             ecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999986

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=3.3e-06  Score=70.42  Aligned_cols=96  Identities=22%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc--ccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~  225 (496)
                      +++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+..           .|.      .......+-...++  .+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-----------~~~------~~~~gd~~~~~~l~~a~i~   63 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YAT------HAVIANATEENELLSLGIR   63 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-----------TCS------EEEECCTTCTTHHHHHTGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-----------hCC------cceeeecccchhhhccCCc
Confidence            47899999999999999999999999999999998876421           111      00000000001122  378


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +||.||.+++++... ..+...+.+..+...|++-.
T Consensus        64 ~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          64 NFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             GCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEEC
T ss_pred             cccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEeec
Confidence            999999999987543 23334455555655666543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.09  E-value=9.6e-06  Score=70.61  Aligned_cols=125  Identities=20%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             eEEEEEeCChhhHH--HHHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-
Q 010966          148 KKVAILGGGLMGSG--IATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-  220 (496)
Q Consensus       148 ~kV~VIGaG~mG~~--iA~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-  220 (496)
                      +||+|||+|..|.+  ++..+...    +-+++++|++++..+...-.  .........-.        ..-++..++| 
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d--~~~~~~~~~~~--------~~~~~~~~td~   71 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVG--ALAKRMVEKAG--------VPIEIHLTLDR   71 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHH--HHHHHHHHHTT--------CCCEEEEESCH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHH--HHHHHHHHhcC--------CCceeeecCCc
Confidence            59999999988754  44444432    23999999988642211111  10111111100        1124445666 


Q ss_pred             cccccCCCEEEEeccC----------------------------------ChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          221 YESFKDVDMVIEAIIE----------------------------------NVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       221 ~~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      .+++++||+||.++.-                                  +..+.+++..++.+++ |++++...|....
T Consensus        72 ~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPvd  150 (169)
T d1s6ya1          72 RRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAG  150 (169)
T ss_dssp             HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred             hhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChHH
Confidence            4678999999998841                                  2233567778888886 5565544333332


Q ss_pred             H-HHHHhhhcCCCeeeec
Q 010966          267 L-NLIGERTYSKDRIVGA  283 (496)
Q Consensus       267 ~-~~la~~~~~~~r~ig~  283 (496)
                      + +........+.|++|+
T Consensus       151 v~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         151 MVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHCCCCCEEee
Confidence            2 3333333334577775

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.04  E-value=3e-05  Score=64.34  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---c--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--  221 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--  221 (496)
                      |||.|+|+|.+|..+|..|...|++|+++|.|++.++...++          .+.          .-+... ++   +  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~----------~vi~Gd~~~~~~l~~   60 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA----------LVINGDCTKIKTLED   60 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhh----------hhccCcccchhhhhh
Confidence            699999999999999999999999999999999988764321          010          011111 11   1  


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ..++++|.++-+.+.+. . ..+...+.+...+..+++..
T Consensus        61 ~~i~~a~~vv~~t~~d~-~-N~~~~~~~k~~~~~~iI~~~   98 (132)
T d1lssa_          61 AGIEDADMYIAVTGKEE-V-NLMSSLLAKSYGINKTIARI   98 (132)
T ss_dssp             TTTTTCSEEEECCSCHH-H-HHHHHHHHHHTTCCCEEEEC
T ss_pred             cChhhhhhhcccCCcHH-H-HHHHHHHHHHcCCceEEEEe
Confidence            23688999998887653 2 22333444455666666543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.97  E-value=2e-06  Score=75.89  Aligned_cols=98  Identities=15%  Similarity=0.085  Sum_probs=73.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+++..                  +            ......+++ .+++
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~------------~~~~~~~l~ell~~   92 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G------------PWRFTNSLEEALRE   92 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S------------SSCCBSCSHHHHTT
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------------------c------------ceeeeechhhhhhc
Confidence            68999999999999999999999999999987531                  1            011233454 5899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=.+..+.++++++|+..+-  .+.-+.+.+.+.
T Consensus        93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~  143 (181)
T d1qp8a1          93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK  143 (181)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcc
Confidence            9999999998877655444667777899998875443  356677777764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.90  E-value=2.7e-05  Score=66.54  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      +||+|||+ |..|.++|..++..+.       +++++|.+...... . .    ++.........      ....+...+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~-~----l~~~~~~~~~~------~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-D-G----VLMELQDCALP------LLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-H-H----HHHHHHHTCCT------TEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-h-h----hhhhhcccccc------cccccccCc
Confidence            59999996 9999999999987653       58888876543221 1 0    11111111110      112333333


Q ss_pred             -CcccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhCCCCeeE--ecc
Q 010966          220 -DYESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCIL--ASN  261 (496)
Q Consensus       220 -~~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il--~sn  261 (496)
                       ++++++++|+||.+.-  .            +..+.+++...+.++++.+.++  +||
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN  130 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN  130 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC
Confidence             4678999999998751  1            2345666777788888877633  455

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.88  E-value=6e-06  Score=71.84  Aligned_cols=39  Identities=21%  Similarity=0.137  Sum_probs=36.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++|.|||+|.||..+|..|+++||+|+++|++.+.++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            689999999999999999999999999999999987764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.79  E-value=7.4e-06  Score=73.14  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=72.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+.......             ..+             . ...+++ .++.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~~-------------~-~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KKG-------------Y-YVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------C-BCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cce-------------e-eeccccccccc
Confidence            68999999999999999999999999999977542111             011             1 123443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+  +.+.-..+.+.+.
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  147 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  147 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHh
Confidence            999999999877655544456667789999886432  3455667777664

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.75  E-value=1e-05  Score=71.92  Aligned_cols=103  Identities=15%  Similarity=0.043  Sum_probs=73.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-ccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|..||+....-...            .             ..+....++++ ++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------A-------------LGLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------H-------------HTCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------h-------------hccccccchhhcccc
Confidence            589999999999999999999999999999864321110            0             01223445544 689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=.+..+.++++++++..+  +.+.-+.+.+.+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  155 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence            999999999776655544456667789999886433  2356677777774

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.74  E-value=6.3e-05  Score=65.56  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcce
Q 010966          146 RVKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL  215 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  215 (496)
                      ...||+|+|+ |.+|.+++..++....       .+.++|++...  ++...        ........      .....+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~--------mdl~d~a~------~~~~~~   88 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA--------MELEDSLY------PLLREV   88 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH--------HHHHTTTC------TTEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchh--------hhhccccc------ccccCc
Confidence            3469999996 9999999999987542       67777776532  22111        01111111      112333


Q ss_pred             ecc-cCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966          216 TGV-LDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (496)
Q Consensus       216 ~~~-~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~snt  262 (496)
                      ..+ +++++++++|+||...  |            .+..+.+++...+.++++++++|...+
T Consensus        89 ~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          89 SIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            334 4478899999999875  1            233455666677888888888554333

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=5e-05  Score=64.89  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|+|+|.|.+|.++|..+...|.+|+++|++|-..-++                        .++-....+..+.+..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A------------------------~~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA------------------------AMEGYEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH------------------------HHTTCEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh------------------------hcCceEeeehhhhhhhc
Confidence            589999999999999999999999999999999542221                        11122222333567889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhh
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER  273 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~  273 (496)
                      |+||.+.-..--+    -.+-.+.+++++|+++.++   -+.+..|.+.
T Consensus        81 divvtaTGn~~vI----~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          81 NIFVTTTGCIDII----LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             SEEEECSSCSCSB----CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             cEEEecCCCccch----hHHHHHhccCCeEEEEeccccceecHHHHhhc
Confidence            9999886542222    2333456799999986654   3566676653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=3.8e-05  Score=67.67  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (496)
                      -++|+|||.|.+|..+|..+..-|.+|+.||+.........            .+             +. ..++ +.++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~------------~~-------------~~-~~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ------------LG-------------IE-LLSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH------------HT-------------CE-ECCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh------------cC-------------ce-eccHHHHHh
Confidence            36899999999999999999989999999998754322110            01             11 1234 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhcCC-Ceeeecccc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYSK-DRIVGAHFF  286 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~~~-~r~ig~hf~  286 (496)
                      .||+|+.++|-..+.+.-+=++..+.++++++++..+  +.+.-+.+.+.+... -...++--|
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~  161 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF  161 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence            9999999999887765544456777789999886332  345667888877533 233444444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.62  E-value=3.9e-05  Score=65.86  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~  225 (496)
                      ++|.|||+|.||..++..|...|+ +|++++|+.++++...+.+          |           .......+ .+.+.
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l~   83 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHLA   83 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHhc
Confidence            689999999999999999999998 6999999988876543211          1           01111223 24578


Q ss_pred             CCCEEEEeccCCh-HHHHHHHHHHHh
Q 010966          226 DVDMVIEAIIENV-SLKQQIFADLEK  250 (496)
Q Consensus       226 ~aDlVIeav~e~~-~~k~~v~~~l~~  250 (496)
                      ++|+||.|++.+. -+.++.++...+
T Consensus        84 ~~Divi~atss~~~ii~~~~i~~~~~  109 (159)
T d1gpja2          84 RSDVVVSATAAPHPVIHVDDVREALR  109 (159)
T ss_dssp             TCSEEEECCSSSSCCBCHHHHHHHHH
T ss_pred             cCCEEEEecCCCCccccHhhhHHHHH
Confidence            9999999986432 244555555433

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=5.3e-05  Score=64.66  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (496)
                      .+||+|||+ |.+|..+|..++..++       ...++|.  +.+.++.....        ......      .....+.
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~   69 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME--------LEDCAF------PLLAGLE   69 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHTTTC------TTEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh--------hhcccc------ccccccc
Confidence            359999997 9999999999998764       2334443  33333322111        111100      0112333


Q ss_pred             cc-cCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          217 GV-LDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       217 ~~-~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      .+ .++++++++|+||.+.  |.            +..+.+++...+.+++++++++...|.
T Consensus        70 ~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          70 ATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             cCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            33 3467899999999876  11            234555666778888888876644333

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.57  E-value=1.5e-05  Score=71.24  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=72.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+.+....                  .         ..+. ..+++ .++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------------~---------~~~~-~~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD------------------H---------PDFD-YVSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC------------------C---------TTCE-ECCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhh------------------h---------cchh-HHHHHHHHHh
Confidence            6899999999999999999999999999998643210                  0         0111 12343 4688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY  275 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~  275 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+  +.+.-+.+.+.+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence            999999999887765545456667789999886332  2355677777774

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.57  E-value=3.1e-05  Score=68.46  Aligned_cols=105  Identities=11%  Similarity=0.031  Sum_probs=74.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|+|||.|.+|..+|..+..-|.+|..||+.........           ..             .+....++ +.+++
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~-------------~~~~~~~l~~~l~~  100 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------EL-------------NLTWHATREDMYPV  100 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HH-------------TCEECSSHHHHGGG
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------cc-------------cccccCCHHHHHHh
Confidence            6999999999999999999989999999998642211100           00             12223444 45799


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhcC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYS  276 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~~  276 (496)
                      ||+|+.++|-+.+.+.-+=++..+.++++++|+..+  +.+.-+.+.+.+..
T Consensus       101 sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~  152 (188)
T d2naca1         101 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES  152 (188)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             ccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhC
Confidence            999999999877655555566777889999886433  24566788777743

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.56  E-value=2e-05  Score=69.86  Aligned_cols=115  Identities=12%  Similarity=0.039  Sum_probs=78.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (496)
                      ++|+|||.|.+|+.+|..+..-|.+|..||+.........           .             .......+++ .++.
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~-------------~~~~~~~~l~~ll~~  103 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-----------S-------------YQATFHDSLDSLLSV  103 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-----------H-------------HTCEECSSHHHHHHH
T ss_pred             cceEEeecccchHHHHHHHHhhccccccccccccccchhh-----------c-------------ccccccCCHHHHHhh
Confidence            6899999999999999999999999999998654222110           0             0111233443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhcC-CCeeeecccc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYS-KDRIVGAHFF  286 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~~-~~r~ig~hf~  286 (496)
                      ||+|+.++|-..+.+.-+=++..+.++++++++..+  ..+.-+.+.+.+.. .-...++.-|
T Consensus       104 sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~  166 (191)
T d1gdha1         104 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVF  166 (191)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             CCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence            999999999877765545456677789999887432  23455677777643 2233455544

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=2.5e-05  Score=73.05  Aligned_cols=30  Identities=13%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             CcccCCCCCHHHHHhCCCcceecCCchHHH
Q 010966            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVS   30 (496)
Q Consensus         1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~   30 (496)
                      |++||++++|+||+++||||+|++++++..
T Consensus       173 llltg~~~~a~eA~~~Glv~~v~~~~~~~~  202 (266)
T d1pjha_         173 CLMFNKPFKYDIMCENGFISKNFNMPSSNA  202 (266)
T ss_dssp             HHHTTCCEEHHHHHHTTCCSEECCCCTTCH
T ss_pred             hhccCCcCCHHHHHHCCCEeEeeCchhhhH
Confidence            578999999999999999999998765443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=4.7e-05  Score=67.28  Aligned_cols=110  Identities=19%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (496)
                      -++|+|||.|.+|..+|..+..-|.+|+.||+......                            .......+++ .++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            36899999999999999999999999999998643100                            0111223444 468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhcC-CCeeeecc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYS-KDRIVGAH  284 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~~-~~r~ig~h  284 (496)
                      .||+|+.++|-..+.+.-+=++..+.++++++|+..+  ..+.-+++.+.+.. .....++.
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lD  157 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAID  157 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEE
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEe
Confidence            9999999999877666555566777889999887433  34566788887743 33334444

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=7.2e-05  Score=66.66  Aligned_cols=38  Identities=29%  Similarity=0.398  Sum_probs=35.0

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      .|+||.|+|+ |.+|+.++..|+.+|++|++++|+++++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            4789999995 9999999999999999999999998764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.19  E-value=0.00034  Score=59.36  Aligned_cols=96  Identities=18%  Similarity=0.100  Sum_probs=66.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      +++.|+|.|..|.++|..+...|..|+++++||-.+-++                        .++-....+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            589999999999999999999999999999999432111                        22223333334668999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHH
Q 010966          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIG  271 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la  271 (496)
                      |++|.+....--+.    .+-...+++++||+....   -+.+..+.
T Consensus        80 Di~vTaTGn~~vI~----~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          80 DFFITCTGNVDVIK----LEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             SEEEECCSSSSSBC----HHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             cEEEEcCCCCcccc----HHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            99999986543222    333445789999875543   34455554

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.18  E-value=0.00034  Score=59.74  Aligned_cols=86  Identities=22%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|+|||.|.-|.+=|.+|..+|++|++--+.... .+++           .+.|             +...+-.|+++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-----------~~~G-------------f~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHG-------------LKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTT-------------CEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-----------hhhc-------------cccccHHHHhhh
Confidence            68999999999999999999999999997776432 2222           1223             222333467899


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHhhCCCCeeEe
Q 010966          227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA  259 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~  259 (496)
                      +|+|...+|+.  .-.++|. ++.++++++..+.
T Consensus        73 aDiim~L~PD~--~q~~vy~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          73 ADVVMILTPDE--FQGRLYKEEIEPNLKKGATLA  104 (182)
T ss_dssp             CSEEEECSCHH--HHHHHHHHHTGGGCCTTCEEE
T ss_pred             cCeeeeecchH--HHHHHHHHhhhhhcCCCcEEE
Confidence            99999999954  4567885 6999999988775

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00052  Score=59.29  Aligned_cols=71  Identities=23%  Similarity=0.277  Sum_probs=51.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-CcccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~  226 (496)
                      ++|.|+|+|-++.+++..|...+.+|++++|+.++++...+.+.       ..+            .+.... +...+.+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence            58999999999999999999888899999999988776543321       011            111111 2224678


Q ss_pred             CCEEEEeccCC
Q 010966          227 VDMVIEAIIEN  237 (496)
Q Consensus       227 aDlVIeav~e~  237 (496)
                      +|+||.|+|-.
T Consensus        80 ~diiIN~tp~g   90 (171)
T d1p77a1          80 YDLVINATSAG   90 (171)
T ss_dssp             CSEEEECCCC-
T ss_pred             cceeeeccccc
Confidence            99999999855

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00054  Score=56.18  Aligned_cols=79  Identities=22%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      +||+|+|+ |.||+.|+..+...|++++.. |.+                                        +.+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhc
Confidence            58999996 999999999998899987642 211                                        124467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la  271 (496)
                      ++|+||+-..  ++.-.+.++...   ..+..+++-|++++-+++.
T Consensus        41 ~~DVvIDFS~--p~~~~~~l~~~~---~~~~p~ViGTTG~~~~~~~   81 (128)
T d1vm6a3          41 SPDVVIDFSS--PEALPKTVDLCK---KYRAGLVLGTTALKEEHLQ   81 (128)
T ss_dssp             CCSEEEECSC--GGGHHHHHHHHH---HHTCEEEECCCSCCHHHHH
T ss_pred             cCCEEEEecC--HHHHHHHHHHHH---hcCCCEEEEcCCCCHHHHH
Confidence            8999998653  223333444333   3356677778888765543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.07  E-value=0.00098  Score=57.03  Aligned_cols=71  Identities=23%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             eEEEEEeCChhhHH-HHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966          148 KKVAILGGGLMGSG-IATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~-iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (496)
                      .||+|||+|.||.. ....+... +.+++++|.+++.++...+.          .+            .....+++++ +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------~~------------~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YR------------VSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TT------------CCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------cc------------cccccccHHHhc
Confidence            58999999999976 45555554 56889999999887764321          11            1112345443 2


Q ss_pred             -cCCCEEEEeccCChHH
Q 010966          225 -KDVDMVIEAIIENVSL  240 (496)
Q Consensus       225 -~~aDlVIeav~e~~~~  240 (496)
                       .+.|+|+.|+|.+...
T Consensus        60 ~~~iD~V~I~tp~~~H~   76 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVHS   76 (167)
T ss_dssp             GGCCSEEEECSCGGGHH
T ss_pred             ccccceecccccccccc
Confidence             4689999999977543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00092  Score=57.54  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|.|||+|-.+++++..|...|.+|++++|+.++++...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            5899999999999999999999999999999999877644

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.008  Score=51.76  Aligned_cols=40  Identities=23%  Similarity=0.091  Sum_probs=35.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            479999999999999999888997 7999999999887653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.00052  Score=59.05  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  186 (496)
                      ++|.|||+|-++++++..|...|. +|++++|++++.+..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            589999999999999999999997 899999999887654

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.96  E-value=0.00072  Score=59.76  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC------CcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSN------YPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G------~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      ++||+|||.|.-|.+=|.+|..+|      ..|++-=+.. ...+++           .+.|.-..        ..+..+
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA-----------~~dGf~v~--------~~~v~~  104 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEA-----------RAAGFSEE--------NGTLGD  104 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCGG--------GTCEEE
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHH-----------HHcCCccC--------CCcccC
Confidence            579999999999999999999955      5566544332 222222           23342100        011112


Q ss_pred             CcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          220 DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       220 ~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      -.|+++.+|+|+..+|+..  -.++|+++.++++++..+.
T Consensus       105 v~EAv~~ADiVmiLlPDe~--Q~~vy~~I~p~Lk~G~~L~  142 (226)
T d1qmga2         105 MWETISGSDLVLLLISDSA--QADNYEKVFSHMKPNSILG  142 (226)
T ss_dssp             HHHHHHTCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHhhCCEEEEecchHH--HHHHHHHHHHhcCCCceee
Confidence            2356899999999999654  4578999999999998775

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.86  E-value=0.00046  Score=62.60  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .-+||+|||+|.+|.+.|..|+++|++|+++|++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34699999999999999999999999999999863

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.84  E-value=0.00059  Score=55.51  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .++|+|||+|.+|.-+|..|++.|++|+++++.+.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            46899999999999999999999999999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.84  E-value=0.0014  Score=50.65  Aligned_cols=37  Identities=32%  Similarity=0.564  Sum_probs=32.8

Q ss_pred             ccceEEEEEeCChhh-HHHHHHHHhCCCcEEEEeCCHH
Q 010966          145 RRVKKVAILGGGLMG-SGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       145 ~~~~kV~VIGaG~mG-~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ..+++|.|||.|-+| +++|..|...|++|..+|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            357899999999999 7789999999999999998753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.83  E-value=0.0012  Score=57.11  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (496)
                      ++|.|||+|-++++++..|...| +|++++|++++++...+.+...+.     .  ..      ...+.. .++ ....+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~-----~--~~------~~~~~~-~~~~~~~~~   83 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-----K--KF------GEEVKF-SGLDVDLDG   83 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-----C--CH------HHHEEE-ECTTCCCTT
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhc-----h--hh------hhhhhh-hhhhhccch
Confidence            58999999999999999997777 999999999998876655443221     0  00      001111 222 23577


Q ss_pred             CCEEEEeccCC
Q 010966          227 VDMVIEAIIEN  237 (496)
Q Consensus       227 aDlVIeav~e~  237 (496)
                      +|+||.|.|-.
T Consensus        84 ~dliIn~tp~g   94 (177)
T d1nvta1          84 VDIIINATPIG   94 (177)
T ss_dssp             CCEEEECSCTT
T ss_pred             hhhhccCCccc
Confidence            89999988744

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.81  E-value=0.0012  Score=56.29  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCc-ccc
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-ESF  224 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~  224 (496)
                      -.||.|||+|+.|..-+.....-|-+|+++|.++++++.....    +    ..          ........ ..+ +.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~----~~----------~~~~~~~~~~~l~~~~   93 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----F----GS----------RVELLYSNSAEIETAV   93 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----H----GG----------GSEEEECCHHHHHHHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----h----cc----------cceeehhhhhhHHHhh
Confidence            3699999999999999999999999999999999988764321    1    10          00111111 112 457


Q ss_pred             cCCCEEEEec--cCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          225 KDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       225 ~~aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      ++||+||-++  |....- +-+-++.-+.++++.+|++.
T Consensus        94 ~~aDivI~aalipG~~aP-~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1          94 AEADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             HTCSEEEECCCCTTSSCC-CCBCHHHHTTSCTTCEEEET
T ss_pred             ccCcEEEEeeecCCcccC-eeecHHHHhhcCCCcEEEEe
Confidence            8999999987  221110 01224455567899988754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.0028  Score=50.42  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (496)
                      ++|.|||+|..|..-|..|...|.+|++++.....--.          ...+.+.++         .+.-.-+.+++.++
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~i~---------~~~~~~~~~dl~~~   73 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGMLT---------LVEGPFDETLLDSC   73 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCCce---------eeccCCCHHHhCCC
Confidence            69999999999999999999999999999876542111          111222221         11111223568899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHh
Q 010966          228 DMVIEAIIENVSLKQQIFADLEK  250 (496)
Q Consensus       228 DlVIeav~e~~~~k~~v~~~l~~  250 (496)
                      ++|+.+. .+.++...+++...+
T Consensus        74 ~lv~~at-~d~~~n~~i~~~a~~   95 (113)
T d1pjqa1          74 WLAIAAT-DDDTVNQRVSDAAES   95 (113)
T ss_dssp             SEEEECC-SCHHHHHHHHHHHHH
T ss_pred             cEEeecC-CCHHHHHHHHHHHHH
Confidence            9999885 455666666665443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.77  E-value=0.0002  Score=57.88  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||+|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            6899999999999999999999999999998653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.012  Score=50.00  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            379999999999999999988998 7999999999888654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00057  Score=52.63  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||+|+|+|..|.++|..|.+.|.+|+++|.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            5899999999999999999999999999998653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.66  E-value=0.0011  Score=53.79  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=33.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      ++|+|||+|.+|.-+|..|+..|.+|+++++++.-+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            589999999999999999999999999999987644

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0017  Score=56.41  Aligned_cols=41  Identities=17%  Similarity=0.370  Sum_probs=36.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|||+|-+|++++..|...|. ++++++|+++.+++...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            589999999999999999999987 79999999887776543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.57  E-value=0.0027  Score=55.03  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (496)
                      .||+|||+|.||...+..+... +++|+ ++|++++.++...+          +.+ +.        ...+..++++++ 
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~-~~--------~~~~~~~~~~~ll   62 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANN-YP--------ESTKIHGSYESLL   62 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTT-CC--------TTCEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------ccc-cc--------cceeecCcHHHhh
Confidence            4899999999999999888775 66766 67999987665322          111 11        112334566542 


Q ss_pred             --cCCCEEEEeccCChHH
Q 010966          225 --KDVDMVIEAIIENVSL  240 (496)
Q Consensus       225 --~~aDlVIeav~e~~~~  240 (496)
                        .+.|+|+.|.|.+...
T Consensus        63 ~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1          63 EDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             HCTTCCEEEECCCGGGHH
T ss_pred             hccccceeeecccchhhc
Confidence              5689999999877543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.0031  Score=47.91  Aligned_cols=69  Identities=20%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             eEEEEEeCChhhH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGLMGS-GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~mG~-~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      +||.+||-|-+|. ++|..|...|++|...|+++......          +.+.|.           .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~----------L~~~Gi-----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAY----------LRKLGI-----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----------HHHTTC-----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHH----------HHHCCC-----------eEEeeecccccCC
Confidence            5899999999987 78999999999999999986432221          223341           1222334455788


Q ss_pred             CCEEEEe--ccCC
Q 010966          227 VDMVIEA--IIEN  237 (496)
Q Consensus       227 aDlVIea--v~e~  237 (496)
                      +|+||-+  +|++
T Consensus        61 ~d~vV~SsAI~~~   73 (89)
T d1j6ua1          61 PDLVIKTPAVRDD   73 (89)
T ss_dssp             CSEEEECTTCCTT
T ss_pred             CCEEEEecCcCCC
Confidence            9999874  4543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0013  Score=55.13  Aligned_cols=97  Identities=15%  Similarity=0.301  Sum_probs=56.5

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          147 VKKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      |+||+|||+ |..|.-+.+.|..+ .+   +++.+..+...                  |....  ............+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------------------g~~~~--~~~~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------------------QAAPS--FGGTTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------------------SBCCG--GGTCCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------------------ccccc--ccCCceeeecccch
Confidence            579999999 99999999866654 33   56666544321                  11000  00000011112233


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      +.++++|+||.|+|.+.  -+++..++.+ ...++++++|+|..-
T Consensus        61 ~~~~~~DivF~a~~~~~--s~~~~~~~~~-~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          61 EALKALDIIVTCQGGDY--TNEIYPKLRE-SGWQGYWIDAASSLR  102 (146)
T ss_dssp             HHHHTCSEEEECSCHHH--HHHHHHHHHH-TTCCCEEEECSSTTT
T ss_pred             hhhhcCcEEEEecCchH--HHHhhHHHHh-cCCCeecccCCcccc
Confidence            45789999999998654  3344444433 244568889988653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.41  E-value=0.01  Score=52.10  Aligned_cols=39  Identities=13%  Similarity=0.245  Sum_probs=36.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++|+|-|.|.+|..+|..|...|.+|+++|.+++.+...
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            589999999999999999999999999999999877653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.38  E-value=0.00096  Score=60.76  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            57999999999999999999999999999998754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.37  E-value=0.0014  Score=61.42  Aligned_cols=59  Identities=22%  Similarity=0.301  Sum_probs=44.2

Q ss_pred             HHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       110 ~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ..|++.++..+.++-...  .++.          ...-+||+|||+|..|.+.|..|+++|++|+++|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~----------~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           5 AECFQENDYEEFLEIARN--GLKA----------TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GGGGCCTTHHHHHHHHHH--CSCC----------CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             HhhcCCccHHHHHHHHhc--CCCC----------CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            357777777776665332  2221          1123699999999999999999999999999999765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.32  E-value=0.0012  Score=57.79  Aligned_cols=44  Identities=25%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 010966          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR  191 (496)
Q Consensus       148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  191 (496)
                      ++|.|.| .|-+|..+|..|++.|.+|++.++++++++...+.+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            5788888 5999999999999999999999999999887665543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0038  Score=52.98  Aligned_cols=69  Identities=9%  Similarity=-0.032  Sum_probs=45.9

Q ss_pred             eEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      .||+|||+|.||.. ....+... ++++ .++|++++.++...+..          +             +...+++++ 
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~----------~-------------~~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc----------c-------------ccccccchhh
Confidence            48999999999986 45555544 6664 57899988766543210          1             122344443 


Q ss_pred             ccCCCEEEEeccCChH
Q 010966          224 FKDVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~  239 (496)
                      +++.|+|+.|.|.+..
T Consensus        59 ~~~~D~V~I~tp~~~h   74 (164)
T d1tlta1          59 AASCDAVFVHSSTASH   74 (164)
T ss_dssp             HTTCSEEEECSCTTHH
T ss_pred             hhhcccccccccchhc
Confidence            4789999999987654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0016  Score=56.56  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      -+||+|||+|..|..-|..++++||+|+++|.+++
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            47999999999999999999999999999999764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.22  E-value=0.036  Score=46.70  Aligned_cols=40  Identities=20%  Similarity=0.168  Sum_probs=36.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~   67 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK   67 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence            3799999999999999999899999999999999887754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.19  E-value=0.0015  Score=60.10  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=30.2

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .|.|||+|.+|.++|..|+++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.16  E-value=0.0015  Score=56.68  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~  181 (496)
                      +||+|||+|..|...|..|++.|+ +|+++|+++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            699999999999999999999999 5999999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.14  E-value=0.027  Score=47.40  Aligned_cols=40  Identities=23%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|.+|+..|+++++++.++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            4799999999999999988889999999999999887643

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.033  Score=47.70  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             eEEEEEeCChhhHHH-HHHHHhCC--CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGGGLMGSGI-ATALILSN--YPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~i-A~~la~~G--~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      .||+|||+|.||... ...+.+.+  ++|+ ++|++++.++...+.                      .+.....+++++
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeec
Confidence            389999999999874 66666543  3555 789999876653321                      111223455544


Q ss_pred             -c--cCCCEEEEeccCChH
Q 010966          224 -F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       224 -~--~~aDlVIeav~e~~~  239 (496)
                       +  .+.|+|+.|.|.+..
T Consensus        62 ll~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH
T ss_pred             cccccccceeecccccccc
Confidence             2  457888888886643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.07  E-value=0.0016  Score=52.21  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            6899999999999999999999999999998775

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0015  Score=48.28  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |++|+|||+|..|+-++....+-|++|+++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            57999999999999999999999999999998754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0012  Score=53.46  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++++|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            6899999999999999999999999999998764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.03  E-value=0.01  Score=52.88  Aligned_cols=74  Identities=14%  Similarity=0.106  Sum_probs=47.7

Q ss_pred             eEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966          148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (496)
                      -+|+|||+|.||.. +...+... +.+|+ ++|++++.++...+.          -| +..       ..+...+|+++ 
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~----------~~-i~~-------~~~~~~~d~~el   95 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNFDKI   95 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSGGGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh----------hc-ccc-------ccccccCchhhh
Confidence            38999999999975 44555443 66766 889999987764321          11 111       12333455654 


Q ss_pred             c--cCCCEEEEeccCChH
Q 010966          224 F--KDVDMVIEAIIENVS  239 (496)
Q Consensus       224 ~--~~aDlVIeav~e~~~  239 (496)
                      +  .+.|+|+.|+|....
T Consensus        96 l~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          96 AKDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             GGCTTCCEEEECSCGGGH
T ss_pred             cccccceeeeeccchhhh
Confidence            3  368999999987654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.00  E-value=0.0017  Score=59.55  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=31.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |+|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            589999999999999999999999999999864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.94  E-value=0.0077  Score=57.03  Aligned_cols=89  Identities=13%  Similarity=0.111  Sum_probs=58.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ++++|||+|.++..-+..+.. ..+ +|.+|+++++..+...+++.       ..+ +           ....+..+++.
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~-~-----------~~~~~~~~a~~  186 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRG-I-----------SASVQPAEEAS  186 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTT-C-----------CEEECCHHHHT
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcC-C-----------ccccchhhhhc
Confidence            579999999999999987765 344 89999999998877654332       111 1           11223346688


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +||+|+-|.+....+..      .+.+++++.|.+.
T Consensus       187 ~aDiV~taT~s~~P~~~------~~~l~~G~hv~~i  216 (320)
T d1omoa_         187 RCDVLVTTTPSRKPVVK------AEWVEEGTHINAI  216 (320)
T ss_dssp             SSSEEEECCCCSSCCBC------GGGCCTTCEEEEC
T ss_pred             cccEEEEeccCcccccc------hhhcCCCCeEeec
Confidence            99999999876543311      1245666655443

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.93  E-value=0.0083  Score=50.60  Aligned_cols=97  Identities=20%  Similarity=0.248  Sum_probs=54.0

Q ss_pred             eEEEEEeCChhhHHH-HHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHhhhcceecccCccc
Q 010966          148 KKVAILGGGLMGSGI-ATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~i-A~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~  223 (496)
                      .||+|||+|.+|+.+ ...+... ..+++. .+++++......         ..+.|.-.. ...+..       .+..+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~---------a~~~~i~~~~~~~d~l-------~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLAR---------AQRMGVTTTYAGVEGL-------IKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHH---------HHHTTCCEESSHHHHH-------HHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhh---------hhhcCCcccccceeee-------eeccc
Confidence            589999999999974 4555444 345544 578765322111         011221100 000000       00113


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ..+.|+|+.|+|......+...   ...+..++.+++|||
T Consensus        69 ~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECST
T ss_pred             ccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEccc
Confidence            4679999999997665554432   223467888999987

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0032  Score=53.70  Aligned_cols=39  Identities=26%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|.|+|+|.+|...++.+...|.+|++.|.++++.+.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            489999999999998888888999999999999877654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0017  Score=51.94  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||.|||+|..|.-+|..|++.|++|+++++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            5899999999999999999999999999999764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.87  E-value=0.0023  Score=58.58  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |||+|||+|.-|...|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.86  E-value=0.0059  Score=52.57  Aligned_cols=40  Identities=18%  Similarity=0.139  Sum_probs=36.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      -||.|||+|+.|..-+.....-|-.|+++|++++++++..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            5999999999999999999999999999999998877643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.81  E-value=0.0033  Score=59.48  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+||+|||+|.-|.++|..|+++|++|+++|.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999999999999999999999999775

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.045  Score=45.30  Aligned_cols=97  Identities=5%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc--
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE--  222 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~--  222 (496)
                      +|.|+|.|.+|..++..|...|++|+++|.+++......+..       ...|.          .-+.+. ++   ++  
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~~----------~vi~Gd~~d~~~L~~a   67 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR-------LGDNA----------DVIPGDSNDSSVLKKA   67 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-------HCTTC----------EEEESCTTSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh-------hcCCc----------EEEEccCcchHHHHHh
Confidence            699999999999999999999999999999987644332211       11111          011111 11   22  


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      .+.+||.||.+.+++.. ...+...+.+..+.-.+++-..+
T Consensus        68 ~i~~a~~vi~~~~~d~~-n~~~~~~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          68 GIDRCRAILALSDNDAD-NAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             TTTTCSEEEECSSCHHH-HHHHHHHHHHHTSSSCEEEECSS
T ss_pred             ccccCCEEEEccccHHH-HHHHHHHHHHhCCCCceEEEEcC
Confidence            36889999999887643 22223334444444446654333

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.70  E-value=0.04  Score=49.94  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             eEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       148 ~kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |||++| |+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            578766 55 67999999999999999999999999888765544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.69  E-value=0.08  Score=48.75  Aligned_cols=42  Identities=26%  Similarity=0.395  Sum_probs=35.7

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++||  |+|-+|.++|..|++.|++|++.|++.+.++...+++
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            56655  5699999999999999999999999999888766544

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.63  E-value=0.011  Score=50.47  Aligned_cols=64  Identities=17%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      .||+|||+|.||+..+..+... ++++ .++|++++....                           .......++ +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            4899999999999999988765 5664 467777542111                           112223333 335


Q ss_pred             cCCCEEEEeccCCh
Q 010966          225 KDVDMVIEAIIENV  238 (496)
Q Consensus       225 ~~aDlVIeav~e~~  238 (496)
                      .+.|+|+.|.|...
T Consensus        57 ~~~D~Vvi~tp~~~   70 (170)
T d1f06a1          57 DDVDVLFLCMGSAT   70 (170)
T ss_dssp             TTCSEEEECSCTTT
T ss_pred             cccceEEEeCCCcc
Confidence            78999999988764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.0026  Score=58.85  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +|.|||+|.-|..+|..|+++|++|+++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7999999999999999999999999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0034  Score=50.88  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|+|||+|..|.-+|..|++.|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            5899999999999999999999999999999753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0054  Score=48.61  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      .||+|||+|..|+-++....+-|++|+++|.+++.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            58999999999999999999999999999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.47  E-value=0.0033  Score=50.49  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|+|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            6899999999999999999999999999998764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.042  Score=51.13  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=35.0

Q ss_pred             EEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~-VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++ |.|+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el   56 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL   56 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            455 5555 77999999999999999999999999888766544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.43  E-value=0.01  Score=54.15  Aligned_cols=42  Identities=21%  Similarity=0.201  Sum_probs=36.3

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      ||++|  |++-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l   46 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   46 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            68777  4478999999999999999999999999888776554

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.41  E-value=0.001  Score=59.70  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=25.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEE
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILK  176 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~  176 (496)
                      |||+|||+|.+|.+.|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            58999999999999999999999865443

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.40  E-value=0.0058  Score=49.16  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ++|.|||+|..|.-+|..|+..|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5899999999999999999999999999999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.38  E-value=0.048  Score=46.39  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=34.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      +|.|+|+|.+|...++.+...|. +|+..|.++++++.++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            79999999999999999888897 7999999999887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.36  E-value=0.0028  Score=50.58  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +++.|||+|..|.-+|..|++.|++|+++++.+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            6899999999999999999999999999999764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.27  E-value=0.0066  Score=57.56  Aligned_cols=36  Identities=33%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSN--YPVILKEVNEK  181 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~  181 (496)
                      .|+||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            4789999999999999999998876  59999999853

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.25  E-value=0.0058  Score=56.85  Aligned_cols=32  Identities=19%  Similarity=0.594  Sum_probs=29.6

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      +|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            79999999999999999999996 799999874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.19  E-value=0.036  Score=47.30  Aligned_cols=39  Identities=15%  Similarity=0.229  Sum_probs=35.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .|.|+|+|.+|...++.+...|. +|+..|+++++++.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak   71 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM   71 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH
Confidence            79999999999999999999995 8999999999988765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0079  Score=55.63  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4589999999999999999999999999999764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.16  E-value=0.0074  Score=50.29  Aligned_cols=96  Identities=19%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          148 KKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      |||+|||+ |..|.-+.+.|..+ .|   ++..+.-+...                  |....  .......+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~------------------gk~~~--~~~~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG------------------VPAPN--FGKDAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS------------------SBCCC--SSSCCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc------------------ccccc--cCCcceeeecccchh
Confidence            58999998 99999999877654 44   45544433210                  11100  000000111122344


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      .++++|+|+.|+|...  -+++...+.+. ...+++++++|...
T Consensus        61 ~~~~~DvvF~alp~~~--s~~~~~~l~~~-g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          61 SLKQLDAVITCQGGSY--TEKVYPALRQA-GWKGYWIDAASTLR  101 (147)
T ss_dssp             HHTTCSEEEECSCHHH--HHHHHHHHHHT-TCCSEEEESSSTTT
T ss_pred             hhccccEEEEecCchH--HHHHhHHHHHc-CCceEEEeCCcccc
Confidence            5789999999998654  34555555442 34567889988764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.13  E-value=0.0074  Score=49.33  Aligned_cols=36  Identities=28%  Similarity=0.577  Sum_probs=33.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      ++|+|||+|.+|.-+|..++..|++|+++++.+.-+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            589999999999999999999999999999977543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.11  E-value=0.086  Score=47.55  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   49 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   49 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445566 77999999999999999999999999887765543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.11  E-value=0.03  Score=45.70  Aligned_cols=81  Identities=14%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             EEEEEeC-ChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966          149 KVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (496)
                      ||+|+|+ |.||..++..+.. .++++. .+|+.... .                                    .....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~------------------------------------~~~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-S------------------------------------LLTDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-H------------------------------------HHHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-h------------------------------------hhccc
Confidence            7999995 9999999987765 466654 34432110 0                                    00124


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHH
Q 010966          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (496)
Q Consensus       226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la  271 (496)
                      ++|+||+-...+  .-.+.   ++..+..+..+++-|++++-+++.
T Consensus        44 ~~DvvIDFS~p~--~~~~~---~~~~~~~~~~~ViGTTG~~~~~~~   84 (135)
T d1yl7a1          44 NTEVVIDFTHPD--VVMGN---LEFLIDNGIHAVVGTTGFTAERFQ   84 (135)
T ss_dssp             TCSEEEECCCTT--THHHH---HHHHHHTTCEEEECCCCCCHHHHH
T ss_pred             cCCEEEEcccHH--HHHHH---HHHHHhcCCCEEEeccccchhHHH
Confidence            689999965322  22233   333334566677788888765443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.10  E-value=0.0036  Score=50.60  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      +++.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            589999999999999999999999999999877543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.10  E-value=0.0085  Score=48.19  Aligned_cols=33  Identities=15%  Similarity=0.049  Sum_probs=30.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ++++|||+|.+|.-+|..|.+.|.+|+++.+++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            479999999999999999999999999999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.085  Score=47.42  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=35.0

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |+++| |+ +-+|..+|..|+++|.+|++.|++++.++...+++
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45555 66 66999999999999999999999999988765543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.06  E-value=0.1  Score=47.20  Aligned_cols=42  Identities=24%  Similarity=0.177  Sum_probs=35.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      |+|.|.|+ +-||.+||..|++.|++|++.+++++.+++..+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~   49 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI   49 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45667775 8899999999999999999999999988876543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.05  E-value=0.0073  Score=53.62  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      ||+|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            79999999999999999999996 799999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.03  E-value=0.0079  Score=55.14  Aligned_cols=31  Identities=23%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      -|.|||+|.+|.+.|..|+++|++|+++|..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999975

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.98  E-value=0.0067  Score=48.48  Aligned_cols=35  Identities=11%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            68999999999999999999999999999997653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.0077  Score=56.31  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |..|.|||+|..|.++|..|+..|++|+++|.++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            5689999999999999999999999999999775

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.90  E-value=0.097  Score=43.62  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=35.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|.|+|+|.+|...++.+...|.+|+..+.++++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            489999999999998888888999999999999987764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.88  E-value=0.055  Score=48.95  Aligned_cols=39  Identities=26%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~   47 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA   47 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            55555 55 77999999999999999999999998877654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.83  E-value=0.02  Score=52.27  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus        10 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3445566 67999999999999999999999999988776544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.072  Score=48.53  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=34.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      +++.|.|+ +-+|.++|..|++.|++|++.+++++.+++..+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            35556676 669999999999999999999999999887654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.73  E-value=0.02  Score=52.29  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=36.2

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      ||++|  |++-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67766  4589999999999999999999999999988766544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.72  E-value=0.012  Score=50.62  Aligned_cols=81  Identities=20%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHhhh-cceecccC
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEKTI-SLLTGVLD  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~~~-~~i~~~~~  220 (496)
                      |-||+|.|.|.+|+.+++.+..+ +++|+.+ |.++.......          ...+.   ...+...... ..+....+
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~v~g~   70 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIA----------HRRGIRIYVPQQSIKKFEESGIPVAGT   70 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHH----------HHTTCCEECCGGGHHHHHTTTCCCCCC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHh----------cccCcceeccCccceeccccceecCCc
Confidence            45899999999999999999876 4676655 56554322211          11111   1111111111 12222333


Q ss_pred             cc-cccCCCEEEEeccCC
Q 010966          221 YE-SFKDVDMVIEAIIEN  237 (496)
Q Consensus       221 ~~-~~~~aDlVIeav~e~  237 (496)
                      .+ ...++|+||||.+..
T Consensus        71 ~~~~~~~vDiViecTG~f   88 (178)
T d1b7go1          71 VEDLIKTSDIVVDTTPNG   88 (178)
T ss_dssp             HHHHHHHCSEEEECCSTT
T ss_pred             hhhhhhcCCEEEECCCCc
Confidence            32 356899999999864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.71  E-value=0.016  Score=52.70  Aligned_cols=43  Identities=28%  Similarity=0.299  Sum_probs=35.9

Q ss_pred             eEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       148 ~kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .||++| |+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l   54 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI   54 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            366766 65 78999999999999999999999999888765443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.70  E-value=0.081  Score=47.56  Aligned_cols=39  Identities=26%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      |+++| |+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   47 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA   47 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45544 66 77999999999999999999999998877644

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.01  Score=52.29  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -|.|||+|.-|...|..|+++|++|+++|.++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            38999999999999999999999999999975

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.019  Score=48.56  Aligned_cols=104  Identities=17%  Similarity=0.066  Sum_probs=57.9

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-
Q 010966          147 VKKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (496)
                      ..||+|+|+ |.||+.++..+... +++++ .+|+.....-.            ...|.+..    .....+..+.+++ 
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~----~~~~~~~~~~~~~~   67 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAG----AGKTGVTVQSSLDA   67 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSS----SSCCSCCEESCSTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhc----cccCCceeeccHHH
Confidence            469999996 99999999988775 66643 44443211000            00011100    0001123344554 


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHH
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la  271 (496)
                      .+..+|+||+-..  ++.   ++.-++.....+..+++-|++++-+++.
T Consensus        68 ~~~~~DViIDFs~--p~~---~~~~~~~a~~~~~~~ViGTTG~~~~~~~  111 (162)
T d1diha1          68 VKDDFDVFIDFTR--PEG---TLNHLAFCRQHGKGMVIGTTGFDEAGKQ  111 (162)
T ss_dssp             TTTSCSEEEECSC--HHH---HHHHHHHHHHTTCEEEECCCCCCHHHHH
T ss_pred             HhcccceEEEecc--HHH---HHHHHHHHHhccceeEEecCCCcHHHHH
Confidence            4678999998653  322   2333344444567777778888766543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.60  E-value=0.016  Score=49.54  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            489999999999999999999997 6889999999877653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.58  E-value=0.022  Score=51.95  Aligned_cols=42  Identities=24%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   49 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   49 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445566 77999999999999999999999999888766544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.024  Score=51.63  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=35.5

Q ss_pred             EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI-G-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++|| | ++-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l   55 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56655 4 488999999999999999999999999888766544

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=94.53  E-value=0.028  Score=53.32  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=50.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966          148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (496)
                      ++++|||+|.++..-+..+.. .++ +|.+||+++++.++..+++...      .|           -.+....+. +++
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~------~g-----------~~v~~~~s~~eav  191 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY------SG-----------LTIRRASSVAEAV  191 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC------TT-----------CEEEECSSHHHHH
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc------cC-----------CCceecCCHHHHH
Confidence            589999999999988876643 455 8999999999888765432100      01           124445565 458


Q ss_pred             cCCCEEEEeccC
Q 010966          225 KDVDMVIEAIIE  236 (496)
Q Consensus       225 ~~aDlVIeav~e  236 (496)
                      ++||+|+.|.+.
T Consensus       192 ~~ADIi~t~Tas  203 (340)
T d1x7da_         192 KGVDIITTVTAD  203 (340)
T ss_dssp             TTCSEEEECCCC
T ss_pred             hcCCceeecccc
Confidence            899999987743

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.025  Score=51.56  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             EEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 010966          149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR  191 (496)
Q Consensus       149 kV~-VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~  191 (496)
                      ||+ |.|+ +-+|.++|..|++.|++|++.+++++.+++..+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            555 4455 889999999999999999999999998888665443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.46  E-value=0.023  Score=52.21  Aligned_cols=42  Identities=19%  Similarity=0.191  Sum_probs=35.0

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l   49 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII   49 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45544 55 88999999999999999999999999888766544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.40  E-value=0.16  Score=42.57  Aligned_cols=40  Identities=30%  Similarity=0.272  Sum_probs=33.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...| ..|+..|.++++++.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~   74 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE   74 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence            37999999999999888887666 47888999998877653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.38  E-value=0.029  Score=51.56  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=34.9

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   48 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   48 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            44544 55 77999999999999999999999999888766544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.37  E-value=0.0074  Score=48.84  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +++.|||+|.+|.-+|..+++.|.+|+++++.+.-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            68999999999999999999999999999987643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.28  E-value=0.013  Score=53.04  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~  181 (496)
                      .+|+|||+|.-|...|..|+++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            489999999999999999999996 8999999764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.27  E-value=0.032  Score=50.80  Aligned_cols=42  Identities=31%  Similarity=0.321  Sum_probs=34.5

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3444465 67999999999999999999999999888765543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.031  Score=50.43  Aligned_cols=40  Identities=28%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            55655 55 789999999999999999999999988876543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.13  E-value=0.034  Score=50.67  Aligned_cols=42  Identities=19%  Similarity=0.153  Sum_probs=34.7

Q ss_pred             EEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~-VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |++ |.|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   52 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            455 4455 77999999999999999999999999888765543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.06  E-value=0.018  Score=51.47  Aligned_cols=36  Identities=39%  Similarity=0.514  Sum_probs=33.1

Q ss_pred             cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .-++|.|||+|.-|...|..+++.|++|+++|.+++
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            347999999999999999999999999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.018  Score=48.74  Aligned_cols=40  Identities=23%  Similarity=0.127  Sum_probs=35.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|.+|+.+|+++++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~   68 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence            4899999999999988887778999999999999887654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.00  E-value=0.095  Score=44.39  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=27.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC-CcEEE-EeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSN-YPVIL-KEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~l-~d~~~~  181 (496)
                      |+||+|-|.|.+|+.+.+.+..++ .+|+. -|+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            679999999999999999887765 56554 456543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.96  E-value=0.014  Score=51.83  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=30.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~  181 (496)
                      .||+|||+|.-|.+-|..|+++  |++|+++|..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            3899999999999999999765  789999998864

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.96  E-value=0.084  Score=41.68  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++|+|||+    |..|..+...|...||+|+.++.+.+.+                             ..+....++.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            58999996    6789999999999999988887553221                             12344556666


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      + ...|+++.++|.+  .-.++++++.+. ....++.
T Consensus        53 lp~~~D~vvi~vp~~--~~~~~l~~~~~~-g~k~v~~   86 (116)
T d1y81a1          53 LPKDVDVIVFVVPPK--VGLQVAKEAVEA-GFKKLWF   86 (116)
T ss_dssp             SCTTCCEEEECSCHH--HHHHHHHHHHHT-TCCEEEE
T ss_pred             ccccceEEEEEeCHH--HHHHHHHHHHhc-CCceEEe
Confidence            5 4569999999854  344666665543 2334443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.92  E-value=0.035  Score=50.24  Aligned_cols=40  Identities=28%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       149 kV~VI-G-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      |+++| | ++-+|.++|..|++.|++|++.|++++.++...+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            55655 5 4889999999999999999999999988776543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.91  E-value=0.086  Score=49.55  Aligned_cols=39  Identities=21%  Similarity=0.238  Sum_probs=34.5

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      -++|.|.|+ |.+|+.++..|.++|++|+...++.+..+.
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~   50 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN   50 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH
Confidence            368999987 999999999999999999999999876554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.91  E-value=0.035  Score=50.76  Aligned_cols=41  Identities=24%  Similarity=0.403  Sum_probs=34.0

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      |+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   49 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN   49 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45544 55 7799999999999999999999999988776543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.86  E-value=0.17  Score=40.37  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=56.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc-
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE-  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~-  222 (496)
                      +.|.|+|.|.+|..++..|  .|++|+++|.+++..+...           ..|.          .-+.+. ++   +. 
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~-----------~~~~----------~~i~Gd~~~~~~L~~   57 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVL-----------RSGA----------NFVHGDPTRVSDLEK   57 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHH-----------HTTC----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHH-----------hcCc----------cccccccCCHHHHHH
Confidence            3688999999999999987  5788999999998776532           1221          011111 11   21 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                       .+.+|+.+|.+.+++.. ...+...+.+..+.-.+++-.
T Consensus        58 a~i~~A~~vi~~~~~d~~-n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          58 ANVRGARAVIVNLESDSE-TIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             TTCTTCSEEEECCSSHHH-HHHHHHHHHHHCSSSCEEEEC
T ss_pred             hhhhcCcEEEEeccchhh-hHHHHHHHHHHCCCceEEEEE
Confidence             36889999998876543 223333444444443455543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.85  E-value=0.096  Score=44.37  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=35.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|. +|+..|+++++++.+.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            479999999999999999988886 7999999999887754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.021  Score=51.47  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ||+|| |+ +-+|.++|..|++.|++|++.|++.+.++...+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            56655 54 789999999999999999999999988776544

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.80  E-value=0.042  Score=45.60  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      .|.|+  |+|.||..+|..|+..|++|+++++.+.-+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            45555  999999999999999999999999876433

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.77  E-value=0.087  Score=43.02  Aligned_cols=80  Identities=13%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             ceEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       147 ~~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      .++|+|||+    +..|..++..|..+||+|+.++...+.+                             ..+.+..+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~   69 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVL   69 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCccccccc
Confidence            368999997    5799999999999999998887653221                             1233455666


Q ss_pred             ccc-CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeE
Q 010966          223 SFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL  258 (496)
Q Consensus       223 ~~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il  258 (496)
                      ++. ..|+|+.++|.  +...++++++.+. ....++
T Consensus        70 dlp~~iD~v~i~vp~--~~~~~~~~e~~~~-g~k~v~  103 (139)
T d2d59a1          70 DIPDKIEVVDLFVKP--KLTMEYVEQAIKK-GAKVVW  103 (139)
T ss_dssp             GCSSCCSEEEECSCH--HHHHHHHHHHHHH-TCSEEE
T ss_pred             ccCccceEEEEEeCH--HHHHHHHHHHHHh-CCCEEE
Confidence            654 68999999974  3455777776665 334444

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.77  E-value=0.04  Score=50.01  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             EEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       149 kV~-VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      |++ |.|+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            455 5455 889999999999999999999999988777554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.67  E-value=0.43  Score=39.60  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=33.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+ |.+|...++.+...|. +|++.|+++++++.+.
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~   70 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK   70 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence            47999995 9999998888887784 9999999998877653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.61  E-value=0.019  Score=47.54  Aligned_cols=92  Identities=20%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCcc
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE  222 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  222 (496)
                      +||+|||+ |..|.-+.+.|..++|   ++..+.-+...                  |..    .......+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~------------------Gk~----i~~~~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA------------------GQR----MGFAESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT------------------TCE----EEETTEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC------------------Ccc----eeeccccchhccchhh
Confidence            68999999 9999999999987665   66665433221                  110    0000011111 12234


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (496)
Q Consensus       223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~  266 (496)
                      .+.++|+++.|+|....  .++..++   ...++++++++|...
T Consensus        61 ~~~~~d~vf~a~p~~~s--~~~~~~~---~~~g~~VID~Ss~fR   99 (144)
T d2hjsa1          61 DFSSVGLAFFAAAAEVS--RAHAERA---RAAGCSVIDLSGALE   99 (144)
T ss_dssp             CGGGCSEEEECSCHHHH--HHHHHHH---HHTTCEEEETTCTTT
T ss_pred             hhccceEEEecCCcchh--hhhcccc---ccCCceEEeechhhc
Confidence            57899999999985532  2333333   356888899888764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.025  Score=52.73  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=29.4

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.58  E-value=0.24  Score=44.63  Aligned_cols=41  Identities=29%  Similarity=0.327  Sum_probs=32.2

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGR  189 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~  189 (496)
                      |+++|  |++-||.++|..|++.|++|++.+++ .+.++...+.
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~   48 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG   48 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            56666  44779999999999999999999997 5556554443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.043  Score=49.45  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      ++|.|.|+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            35666666 789999999999999999999999988876543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.55  E-value=0.038  Score=46.90  Aligned_cols=40  Identities=15%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|-+|...+..+...|. .|+..|+++++.+.+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~   70 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence            479999999999999999998885 8999999999877653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.51  E-value=0.15  Score=46.00  Aligned_cols=42  Identities=19%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      |+++| |+ +-+|.++|..|++.|++|++.|++.+.+++..+.+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55544 65 67999999999999999999999998877655443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.047  Score=49.37  Aligned_cols=39  Identities=28%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE   47 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            3445555 88999999999999999999999998877643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.048  Score=49.38  Aligned_cols=41  Identities=29%  Similarity=0.271  Sum_probs=34.3

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      |+++| |+ +-+|.++|..|++.|.+|++.|++++.+++..+.
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   46 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA   46 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45555 65 7799999999999999999999999988776543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.38  E-value=0.13  Score=43.46  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCC-CcEE-EEeCCHHH
Q 010966          147 VKKVAILGGGLMGSGIATALILSN-YPVI-LKEVNEKF  182 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~-l~d~~~~~  182 (496)
                      ..||+|.|.|.+|+.+.+.+.... ++|+ +.|+++..
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            359999999999999999887654 5644 55666543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.33  E-value=0.061  Score=43.41  Aligned_cols=81  Identities=11%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             eEEEEEeC----ChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966          148 KKVAILGG----GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (496)
Q Consensus       148 ~kV~VIGa----G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (496)
                      ++|+|||+    |.+|..+.+.|...| ++|+.++.+.+.+                             ..+.+..+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence            68999997    889999999987766 6888888764321                             1234455666


Q ss_pred             ccc-CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          223 SFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       223 ~~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ++. ..|+++.++|..  .--++++++.+.--+..++.
T Consensus        60 dlp~~vDlvvi~vp~~--~~~~~~~~~~~~g~~~~vi~   95 (129)
T d2csua1          60 DIPDEIDLAIIVVPKR--FVKDTLIQCGEKGVKGVVII   95 (129)
T ss_dssp             SCSSCCSEEEECSCHH--HHHHHHHHHHHHTCCEEEEC
T ss_pred             hcCCCCceEEEecChH--HhHHHHHHHHHcCCCEEEEe
Confidence            653 589999999844  44567777665544444444

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.33  E-value=0.13  Score=45.58  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++|+|-|.|.+|..+|..|...|..|+..|.++..++...
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~   79 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence            5899999999999999999999999999999998876643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.072  Score=48.18  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=36.3

Q ss_pred             eEEEEE-eC-ChhhHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHH
Q 010966          148 KKVAIL-GG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       148 ~kV~VI-Ga-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      .||+|| |+ +-+|.++|..|++   .|++|++.+++++.++...+.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l   53 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence            488888 55 6799999999986   7999999999999988776554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.047  Score=46.29  Aligned_cols=72  Identities=17%  Similarity=0.285  Sum_probs=53.5

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|+|||-+ ..|..+|..|++.|..|++++.....+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            589999995 4799999999999999999986543221                                     22568


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      +|+||.++...--++       ...+++++++.+...
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGI  112 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccCc
Confidence            999999986543233       235788998876643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.26  E-value=0.026  Score=50.40  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.6

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.08  E-value=0.26  Score=43.86  Aligned_cols=38  Identities=11%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      ++.|.|+ +-+|.++|..|++.|++|++.+++.+.++..
T Consensus         7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4556666 6699999999999999999999999877654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.03  E-value=0.018  Score=50.94  Aligned_cols=34  Identities=24%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-------cEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-------PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-------~V~l~d~~~~  181 (496)
                      .||+|||+|.-|.+-|..|+++||       +|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            499999999999999999999884       7999998763

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.036  Score=50.01  Aligned_cols=37  Identities=32%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      |+++|  |++-+|.+||..|++.|++|++.|++++.++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE   45 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            55665  55999999999999999999999999987654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.90  E-value=0.25  Score=44.42  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++.++...
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   46 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATA   46 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4556666 67999999999999999999999998876643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.89  E-value=0.22  Score=45.00  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             eEEEEEeC-C--hhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGG-G--LMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G--~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +++.|.|+ |  -+|.++|..|+..|++|++.+++++
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45677786 5  4999999999999999999999964

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.063  Score=49.03  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             eEEEEE--eCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHH
Q 010966          148 KKVAIL--GGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRV  190 (496)
Q Consensus       148 ~kV~VI--GaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i  190 (496)
                      ++|+||  |++-+|..+|..|++. |..|++.+++++.++.+.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            479988  6688999999999975 999999999999988876554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.64  E-value=0.19  Score=45.10  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=31.4

Q ss_pred             eEEEEEeC-Ch--hhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 010966          148 KKVAILGG-GL--MGSGIATALILSNYPVILKEVNEKFLE  184 (496)
Q Consensus       148 ~kV~VIGa-G~--mG~~iA~~la~~G~~V~l~d~~~~~~~  184 (496)
                      ++|.|.|+ |.  ||.+||+.|++.|.+|++.+++.+.+.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~   46 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI   46 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence            46777786 65  999999999999999999999987643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.036  Score=46.76  Aligned_cols=70  Identities=14%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (496)
Q Consensus       148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (496)
                      ++|+|||-+. +|..++..|.+.|..|++.+.....+.                                     +.+++
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~   80 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN   80 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence            5899999965 899999999999999999885543221                                     22467


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (496)
Q Consensus       227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn  261 (496)
                      +|+||-|+.-.--++       ...+++++++++.
T Consensus        81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDv  108 (166)
T d1b0aa1          81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDV  108 (166)
T ss_dssp             CSEEEECSCCTTCBC-------TTTSCTTCEEEEC
T ss_pred             hhHhhhhccCccccc-------ccccCCCcEEEec
Confidence            999999985332222       2356788888764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.49  E-value=0.032  Score=52.32  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHH-----hCCCcEEEEeCCHH
Q 010966          147 VKKVAILGGGLMGSGIATALI-----LSNYPVILKEVNEK  181 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la-----~~G~~V~l~d~~~~  181 (496)
                      ..-|.|||+|..|..+|..|+     ++|++|+++|+++.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            457999999999999999996     57999999998753

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.091  Score=47.09  Aligned_cols=41  Identities=17%  Similarity=0.081  Sum_probs=34.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      +++.|.|+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            35556676 679999999999999999999999988776543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.40  E-value=0.047  Score=50.77  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      -.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            5799999999999999999999999999998764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.40  E-value=0.3  Score=44.33  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=32.8

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .|.|-|+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~   46 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELE   46 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4445565 89999999999999999999999998876643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.041  Score=49.51  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            489999999999999999999998 899999754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=92.35  E-value=0.28  Score=39.59  Aligned_cols=82  Identities=13%  Similarity=0.053  Sum_probs=56.5

Q ss_pred             eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (496)
Q Consensus       148 ~kV~VIGa----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (496)
                      ++|+|||+    +..|..+...|...||+++.+..++..-                           .........++.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchhh
Confidence            57999998    7899999999999999999999875310                           0112334556666


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      + ...|+|+.++|..  .-.+++++..+. ...+++.
T Consensus        67 i~~~iD~v~v~~p~~--~v~~~v~~~~~~-g~k~i~~  100 (136)
T d1iuka_          67 LKEPVDILDVFRPPS--ALMDHLPEVLAL-RPGLVWL  100 (136)
T ss_dssp             CCSCCSEEEECSCHH--HHTTTHHHHHHH-CCSCEEE
T ss_pred             ccCCCceEEEeccHH--HHHHHHHHHHhh-CCCeEEE
Confidence            6 4579999999743  344566665554 3344443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.35  E-value=0.24  Score=41.67  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|.. |++.|.++++++.+.
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~   70 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK   70 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence            4799999999999999988888875 567799998877654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.30  E-value=0.038  Score=46.24  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=29.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~  180 (496)
                      +||.|||+|..|..+|..|.+.|.  +|+++|.++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            599999999999999999998874  899999876

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.25  E-value=0.036  Score=49.91  Aligned_cols=34  Identities=9%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             eEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |||.|| |+ +-+|.++|..|++.|++|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            466555 55 78999999999999999999999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.074  Score=43.85  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      ++|.|||+|.+|..-+..|..+|.+|++++.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            6899999999999999999999999999954

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.13  E-value=0.04  Score=49.59  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=32.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ..|.|||+|..|...|..++++|++|+++|.++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46999999999999999999999999999998653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.08  E-value=0.052  Score=49.22  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +||.|+|+ |.+|+.++..|.++|++|+++++++..
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            68999997 999999999999999999999997643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.01  E-value=0.085  Score=47.31  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      ++.|.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         7 ~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~   46 (242)
T d1ulsa_           7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA   46 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4555565 67999999999999999999999998877643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.86  E-value=0.11  Score=46.59  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             eEEEEE-eC-ChhhHHHHHHHHhCCCc-------EEEEeCCHHHHHHHHHH
Q 010966          148 KKVAIL-GG-GLMGSGIATALILSNYP-------VILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VI-Ga-G~mG~~iA~~la~~G~~-------V~l~d~~~~~~~~~~~~  189 (496)
                      |+|++| |+ +-+|.++|..|++.|++       |++++++++.++...+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~   51 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE   51 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence            466655 65 77999999999999997       99999999988776543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.73  E-value=0.034  Score=43.91  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALIL---SNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~~  181 (496)
                      ++|+|||+|..|.-+|..+++   .|.+|+++++.+.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            589999999999999986654   4889999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.68  E-value=0.59  Score=42.07  Aligned_cols=38  Identities=32%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHH
Q 010966          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEAG  186 (496)
Q Consensus       149 kV~VI-G-aG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~  186 (496)
                      |+++| | ++-+|.+||..|++.|++|++.|++ .+.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            55555 5 5999999999999999999999987 4444443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.64  E-value=0.11  Score=46.33  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      ++|.|.|+ +-+|.++|..|++.|++|++.|++++.+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            35666676 779999999999999999999999887654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.56  E-value=0.038  Score=43.69  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=29.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCHHHH
Q 010966          148 KKVAILGGGLMGSGIATALIL---SNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~  183 (496)
                      ++|+|||+|.+|.-+|..+..   .|.+|+++++.+.-+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            589999999999999976654   466899999876543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.46  E-value=0.14  Score=46.33  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHH
Q 010966          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEK-FLEAGI  187 (496)
Q Consensus       149 kV~VI-G-aG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~  187 (496)
                      |++|| | ++-+|.++|..|++.|++|++.+++.+ .++...
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~   49 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVL   49 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            55655 4 588999999999999999999999854 444443

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.37  E-value=0.22  Score=44.15  Aligned_cols=73  Identities=25%  Similarity=0.247  Sum_probs=45.7

Q ss_pred             ceEEEEEeCChhhHHHHH----HHHh--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966          147 VKKVAILGGGLMGSGIAT----ALIL--SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~----~la~--~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (496)
                      ..||||||+|.+|+-++.    .+..  .+++|+ ++|++++.++...++          .+ +         ......+
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~----------~~-~---------~~~~~~~   75 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQ-L---------KHATGFD   75 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TT-C---------TTCEEES
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHh----------cc-c---------ccceeec
Confidence            369999999997755544    2333  356766 799999887664321          11 1         1122234


Q ss_pred             Ccccc---cCCCEEEEeccCChH
Q 010966          220 DYESF---KDVDMVIEAIIENVS  239 (496)
Q Consensus       220 ~~~~~---~~aDlVIeav~e~~~  239 (496)
                      +++++   .+.|+|+.|+|....
T Consensus        76 ~~~~l~~~~~iD~V~i~tp~~~h   98 (237)
T d2nvwa1          76 SLESFAQYKDIDMIVVSVKVPEH   98 (237)
T ss_dssp             CHHHHHHCTTCSEEEECSCHHHH
T ss_pred             chhhcccccccceeeccCCCcch
Confidence            55442   468999999986654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.29  E-value=0.7  Score=41.08  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             eEEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG---~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      +++.|.|++   -+|.++|..|++.|++|++.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            356667874   49999999999999999999998764443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.21  E-value=0.057  Score=48.77  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |||.|.|+ |.+|+.++..|...||+|+..|++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            68999998 9999999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.33  Score=43.30  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             eEEEEEeCCh---hhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGGGL---MGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG~---mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      ++|.|.|++.   +|.+||..|++.|++|++.+++++..+.
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~   46 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR   46 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            4566667643   7799999999999999999999664443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.15  E-value=0.14  Score=44.41  Aligned_cols=39  Identities=15%  Similarity=0.097  Sum_probs=31.5

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhCCCcEEE--EeCCHHHHH
Q 010966          146 RVKKVAILGG-GLMGSGIATALILSNYPVIL--KEVNEKFLE  184 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l--~d~~~~~~~  184 (496)
                      .|++|.|.|+ |.+|+.++..|+++|++|.+  ..++++...
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            4789999995 99999999999999987554  557776543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.86  E-value=0.18  Score=42.85  Aligned_cols=103  Identities=18%  Similarity=0.257  Sum_probs=55.4

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeC-CHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966          147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEV-NEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~-~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (496)
                      |+||+|||+ |..|.-+.+.|..+ .+++.-.-. +.+ ..-+........+     .+..        ........+. 
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~-----~~~~--------~~~~~~~~~~~   67 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQL-----KGIV--------DLPLQPMSDVR   67 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGG-----TTTC--------CCBEEEESCGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccccccccccc-----cccc--------ccccccchhhh
Confidence            689999997 99999999999987 566654422 111 0000000000000     0000        0011111222 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      ....++|+|+.|+|....  .++...   ....++.++++++...+
T Consensus        68 ~~~~~~dvvf~alp~~~s--~~~~~~---~~~~~~~vIDlSadfRl  108 (179)
T d2g17a1          68 DFSADVDVVFLATAHEVS--HDLAPQ---FLQAGCVVFDLSGAFRV  108 (179)
T ss_dssp             GTCTTCCEEEECSCHHHH--HHHHHH---HHHTTCEEEECSSTTSS
T ss_pred             hhhcccceeeccccchhH--HHHhhh---hhhcCceeecccccccc
Confidence            235789999999986532  233333   23467788888776544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.85  E-value=0.088  Score=48.01  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=31.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      +||.|+|+ |.+|+.++..|..+||+|++.+|++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            58999996 99999999999999999999998753

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.81  E-value=0.13  Score=42.65  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc
Q 010966          149 KVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (496)
                      ||+|||+ |..|.-+.+.|.++.+   ++....-+..                  .|..-    ......... ......
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------------------~G~~~----~~~~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------------------AGKSL----KFKDQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------------------TTCEE----EETTEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------------------ccccc----cccCCcccccccchhh
Confidence            8999999 9999999999998865   3333332211                  11100    000011111 112245


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (496)
Q Consensus       224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~  267 (496)
                      ..++|+++.+.|.....  +..   .+....++.|++++|....
T Consensus        61 ~~~~d~~f~~~~~~~s~--~~~---~~~~~~~~~VIDlSsdfR~   99 (154)
T d2gz1a1          61 FEGVDIALFSAGSSTSA--KYA---PYAVKAGVVVVDNTSYFRQ   99 (154)
T ss_dssp             TTTCSEEEECSCHHHHH--HHH---HHHHHTTCEEEECSSTTTT
T ss_pred             hhhhhhhhhccCccchh--hHH---hhhccccceehhcChhhhc
Confidence            68899999999865432  222   2234578899999887653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.70  E-value=0.17  Score=45.66  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIGR  189 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~  189 (496)
                      |+++| |+ +-+|.++|..|++.|++|++. +++.+.++...+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~   50 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAE   50 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHH
Confidence            45544 54 779999999999999999985 5677666665443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.62  E-value=0.088  Score=45.23  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=29.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~  180 (496)
                      |||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899999999999999999876  56899998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.6  Score=38.87  Aligned_cols=39  Identities=13%  Similarity=0.058  Sum_probs=33.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|.|+|+ |.+|....+.+...|.+|+..+.++++.+.+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~   69 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV   69 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccccccccc
Confidence            48999996 9999999888888999999999998876654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.53  E-value=0.11  Score=49.11  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      +-|||.|.|+ |.+|+.|+..|.+.||+|+++|+..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            3468999976 9999999999999999999999753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.36  E-value=0.26  Score=41.76  Aligned_cols=97  Identities=12%  Similarity=0.137  Sum_probs=55.6

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc
Q 010966          147 VKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (496)
                      |.||+|+|+ |..|.-+.+.|.++- +++..+--+.. ..+   .+....              ......... ..+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~-aG~---~i~~~~--------------p~~~~~~~~~~~~~~~   62 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTY-AGK---KLEEIF--------------PSTLENSILSEFDPEK   62 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTT-TTS---BHHHHC--------------GGGCCCCBCBCCCHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecccc-CCC---cccccC--------------chhhccccccccCHhH
Confidence            579999998 999999999998763 35555532211 111   000000              001111111 122333


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (496)
Q Consensus       224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~  268 (496)
                       .+++|+|+.|.|.....  ++    .+. ..++.|++++|...++
T Consensus        63 ~~~~~dvvf~a~p~~~s~--~~----~~~-~~~~~VIDlSadfRl~  101 (176)
T d1vkna1          63 VSKNCDVLFTALPAGASY--DL----VRE-LKGVKIIDLGADFRFD  101 (176)
T ss_dssp             HHHHCSEEEECCSTTHHH--HH----HTT-CCSCEEEESSSTTTCS
T ss_pred             hccccceEEEccccHHHH--HH----HHh-hccceEEecCcccccc
Confidence             46899999999987532  22    222 3577888999877553

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.29  E-value=0.07  Score=45.07  Aligned_cols=39  Identities=15%  Similarity=0.182  Sum_probs=33.5

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|.|.|+ |.+|....+.+...|.+|+..+.++++.+.+
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            47999996 9999988888888899999999998877654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.27  E-value=0.11  Score=44.55  Aligned_cols=33  Identities=18%  Similarity=0.132  Sum_probs=30.3

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      .++|.|||+|.-|..-|..+++.|.+|+++|..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            468999999999999999999999999999854

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.21  E-value=0.083  Score=49.71  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      ++|.|+|+ |.+|+.++..|..+||+|++.-|+++..
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            68999987 9999999999999999999999987643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.11  Score=48.70  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=29.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      |||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999987 99999999999999999999986

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.11  Score=44.26  Aligned_cols=34  Identities=29%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -++|.|||+|.-|..-|..+++.|.+|+++++.+
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            3689999999999999999999999999998653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.07  E-value=0.085  Score=43.77  Aligned_cols=32  Identities=31%  Similarity=0.445  Sum_probs=27.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .||.|||+|..|..+|..|+ .+.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHH-cCCCEEEEeccc
Confidence            38999999999999999885 578999998753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.02  E-value=0.47  Score=42.22  Aligned_cols=33  Identities=21%  Similarity=0.449  Sum_probs=28.2

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      ||+|| |+ +-+|.++|..|++.|++|++.|++++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            55555 55 77999999999999999999999865

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.01  E-value=0.097  Score=47.65  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             EEEEEeCChhhHHHHHHHHh-CCCcEEEEeCCHH
Q 010966          149 KVAILGGGLMGSGIATALIL-SNYPVILKEVNEK  181 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~-~G~~V~l~d~~~~  181 (496)
                      -|.|||+|.-|...|..|++ .|++|+++|..+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            59999999999999999987 5999999998763

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.01  E-value=0.26  Score=44.08  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             EEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966          150 VAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFL  183 (496)
Q Consensus       150 V~VI-G-aG~mG~~iA~~la~~G~~V~l~d~~~~~~  183 (496)
                      |+|| | ++-+|.++|..|+++|++|++.|++.+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            5656 4 47799999999999999999999986543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.94  E-value=0.14  Score=46.06  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             EEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 010966          149 KVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLE  184 (496)
Q Consensus       149 kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~  184 (496)
                      .+.|.| ++-+|.++|..|++.|++|++.|++++..+
T Consensus         7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            344555 588999999999999999999999987543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.93  E-value=0.17  Score=42.38  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=33.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|-+|...++.+...|. .|+..|.++++++.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            379999999998888888888885 6888899998877643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.79  E-value=0.1  Score=48.05  Aligned_cols=32  Identities=31%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -|.|||+|.-|.+.|..++++|.+|+++|..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999999764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.54  E-value=0.27  Score=42.26  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=33.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...++.+...|. .|++.|.++++++.+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~   67 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK   67 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence            389999999999887777766676 8999999999887654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.15  Score=44.14  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=29.4

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      -|.|||+|.-|...|..+++.|.+|.++|.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999985

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.28  E-value=0.93  Score=37.54  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+|.+|...+..++..|- +|+..|+++++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            479999999999999988888765 7999999999887654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.27  E-value=0.09  Score=44.20  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .+|.|||+|..|..+|..|.+.|.+|+++.+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            589999999999999999999999888776655

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.20  E-value=0.3  Score=43.57  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGR  189 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~  189 (496)
                      +|++|  |++-+|.++|..|++.|++|++.+ ++++.++...+.
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~   45 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ   45 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence            36666  558899999999999999999865 567766665443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.09  E-value=0.13  Score=50.07  Aligned_cols=33  Identities=24%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~  180 (496)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            589999999999999999999998 899999854

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.14  Score=45.21  Aligned_cols=39  Identities=13%  Similarity=-0.101  Sum_probs=33.8

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  188 (496)
                      .+|-.+|+|. | ..+..|++.|++|+.+|.+++.++.+.+
T Consensus        47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            4899999998 3 6678889999999999999999887654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.63  E-value=1.1  Score=39.29  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCcccc--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF--  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~--  224 (496)
                      ++|.=||+|+ | .++..|++.|.+|+++|.+++.++.+.++..       +.+.           ++.. ..+.+.+  
T Consensus        43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~-------~~~~-----------~i~~~~~d~~~l~~  102 (251)
T d1wzna1          43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAK-------ERNL-----------KIEFLQGDVLEIAF  102 (251)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC-----------CCEEEESCGGGCCC
T ss_pred             CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccc-------cccc-----------cchheehhhhhccc
Confidence            5899999997 4 4566788999999999999999888765432       1110           1111 1122221  


Q ss_pred             -cCCCEEEEe--cc--CChHHHHHHHHHHHhhCCCCeeEe
Q 010966          225 -KDVDMVIEA--II--ENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       225 -~~aDlVIea--v~--e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                       ...|+|+-+  +.  -+.+-.+.+++++..+++|+-+++
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence             346877753  11  122234578899999998887554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.60  E-value=0.093  Score=49.28  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=28.2

Q ss_pred             cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 010966          146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       146 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      +||||.|.|+ |.+|+.++..|.++|++|.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            4789999985 99999999999999997665544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.56  E-value=0.091  Score=46.49  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=28.8

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            45555 54 899999999999999999999998753

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.55  E-value=0.29  Score=41.68  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=24.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEe
Q 010966          148 KKVAILGG-GLMGSGIATALILS-NYPVILKE  177 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d  177 (496)
                      .||+|||+ |..|.-+.+.|..+ .+++....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            58999998 99999999999876 34665554

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.54  E-value=0.16  Score=44.61  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -|.|||+|.-|.+-|..+++.|++|+++|.++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999999764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.17  Score=47.20  Aligned_cols=31  Identities=29%  Similarity=0.525  Sum_probs=28.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      +||.|.|+ |.+|+.|+..|+++|++|+++|.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999977 99999999999999999999984

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=0.19  Score=43.75  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -|.|||+|.-|..-|..+++.|.+|+++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            49999999999999999999999999999764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.44  E-value=0.12  Score=45.83  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=30.7

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      .||.|.|+ |-+|.++|..|++.|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            47888877 89999999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.30  E-value=0.18  Score=47.10  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=32.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      +||.|.|+ |.+|+.++..|...|++|+.+|++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            69999985 999999999999999999999997654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.15  E-value=0.15  Score=47.26  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=30.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      .-|.|||+|.-|...|..++++|++|++++..+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            359999999999999999999999999999764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.94  E-value=0.21  Score=41.82  Aligned_cols=31  Identities=23%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      .|.|||+|..|...|..+++.|.+|++++..
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.84  E-value=0.17  Score=43.72  Aligned_cols=32  Identities=25%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -|.|||+|.-|...|..+++.|.+|+++|.++
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48999999999999999999999999999753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=87.67  E-value=0.2  Score=47.13  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      -|.|||+|.-|+.+|..|+++|++|+++++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            488999999999999999999999999986

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.21  Score=46.11  Aligned_cols=32  Identities=28%  Similarity=0.543  Sum_probs=29.3

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      +||.|.|+ |.+|+.++..|.+.|++|+.+|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            58999987 999999999999999999999863

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.43  E-value=0.2  Score=46.96  Aligned_cols=30  Identities=30%  Similarity=0.556  Sum_probs=28.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      -|.|||+|.=|..+|..|+.+|++|++++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            589999999999999999999999999986

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.26  E-value=1.8  Score=35.79  Aligned_cols=40  Identities=8%  Similarity=-0.060  Sum_probs=32.6

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  187 (496)
                      .+|.|+|+ |.+|....+.+...|.+|+..+.++++.+.++
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~   70 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL   70 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence            47999966 55888888877778999999999999877643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.11  E-value=0.21  Score=47.51  Aligned_cols=30  Identities=33%  Similarity=0.569  Sum_probs=28.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEe
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKE  177 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d  177 (496)
                      |||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            58999987 9999999999999999999998

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=87.06  E-value=0.26  Score=41.50  Aligned_cols=40  Identities=20%  Similarity=0.081  Sum_probs=34.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  189 (496)
                      .+|-.||+|.=  ..+..|++.|++|+.+|++++.++.+.++
T Consensus        22 ~rvLd~GCG~G--~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          22 ARVLVPLCGKS--QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             CEEEETTTCCS--HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CEEEEecCcCC--HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            48999999984  46778899999999999999999987654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.53  E-value=0.29  Score=42.13  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      -|.|||+|..|...|..+++.|.+|++++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4899999999999999999999999999975

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.52  E-value=0.25  Score=47.19  Aligned_cols=32  Identities=34%  Similarity=0.385  Sum_probs=29.6

Q ss_pred             EEEEEeCChhhHHHHHHHHh------CCCcEEEEeCCH
Q 010966          149 KVAILGGGLMGSGIATALIL------SNYPVILKEVNE  180 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~------~G~~V~l~d~~~  180 (496)
                      -|.|||+|.-|.+.|..|++      +|++|.++|+..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999997      899999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.3  Score=42.16  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=28.6

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      |.|||+|..|...|..+++.|.+|.++|..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            889999999999999999999999999975

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.33  E-value=0.23  Score=43.14  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      .|.|||+|.-|...|..+++.|.+|+++|.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5999999999999999999999999999975

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.28  E-value=0.25  Score=46.49  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      --|.|||+|.-|..+|..|+++|++|+++++
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3689999999999999999999999999986

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=86.16  E-value=0.59  Score=42.03  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             EEEEE--eCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHH
Q 010966          149 KVAIL--GGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIG  188 (496)
Q Consensus       149 kV~VI--GaG~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~  188 (496)
                      -|+||  |++-+|.++|..|++.|++|++.++ +++.++...+
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~   45 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA   45 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence            47877  4578999999999999999998765 4555554443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.37  Score=37.85  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             cceEEEEEeCC-----------hhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          146 RVKKVAILGGG-----------LMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       146 ~~~kV~VIGaG-----------~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ..+||.|||+|           ..+...+..|.+.|+++++++-||+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            35799999998           45677788888999999999999974

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.97  E-value=0.2  Score=43.85  Aligned_cols=31  Identities=23%  Similarity=0.303  Sum_probs=28.8

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      -|.|||+|.-|...|..+++.|++|.++|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999953

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=85.43  E-value=1.1  Score=40.12  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc---cc
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---SF  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~  224 (496)
                      ++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++.+..       .| +.        .++. ..+..   .-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~~-~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRFL-EGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEEE-ESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeEE-eccccccccc
Confidence            4788899997 4 34556778899999999999999887754321       12 11        1111 11211   12


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      ...|+|+-.+.  .....+++.++.+.++|+-.++
T Consensus       183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            46788886654  3345567778888887776554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=85.34  E-value=0.28  Score=45.55  Aligned_cols=103  Identities=15%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC-cc-
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YE-  222 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~-  222 (496)
                      ++|.|||+|.-  +++..+++.  ..+|+++|++++.++.+.+.+...     ..+....       .+++.. .| .+ 
T Consensus        79 k~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~-----~~~~~~d-------~rv~i~~~Da~~~  144 (312)
T d1uira_          79 KRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW-----HQGAFDD-------PRAVLVIDDARAY  144 (312)
T ss_dssp             CEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHH-----HTTGGGC-------TTEEEEESCHHHH
T ss_pred             ceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccc-----ccCccCC-------CceEEEEchHHHH
Confidence            68999999964  444555544  358999999999988776543211     1111110       122211 11 11 


Q ss_pred             --c-ccCCCEEEEeccCC-----h---HHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          223 --S-FKDVDMVIEAIIEN-----V---SLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       223 --~-~~~aDlVIeav~e~-----~---~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                        . -+.-|+||.-.++.     +   -.-.+.++.+.+.++++-+++.++++
T Consensus       145 l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         145 LERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             HHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             hhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence              1 13478888655321     1   12357889999999999998877543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.25  E-value=0.34  Score=44.36  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ++|-|.|+ |.+|+.++..|.+.||+|+.+|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            47889977 9999999999999999999999865

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.13  E-value=1  Score=41.19  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=27.8

Q ss_pred             EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       149 kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |++|| |+ +-+|.++|..|++.|++|++.|++.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            56665 55 77999999999999999999988653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.93  E-value=0.28  Score=39.52  Aligned_cols=36  Identities=33%  Similarity=0.422  Sum_probs=30.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHh----CCCcEEEEeCCHHHH
Q 010966          148 KKVAILGGGLMGSGIATALIL----SNYPVILKEVNEKFL  183 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~----~G~~V~l~d~~~~~~  183 (496)
                      ++|.|||+|..|.-+|..|+.    .|.+|++++.++.-+
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            489999999999999988863    489999999876433

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=84.91  E-value=0.87  Score=40.38  Aligned_cols=30  Identities=37%  Similarity=0.209  Sum_probs=27.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEe
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKE  177 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d  177 (496)
                      ++|+|-|.|.+|...|..|...|.+|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            589999999999999999999999987655

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.77  E-value=0.1  Score=44.06  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=26.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      +|.|||+|..|..+|..|.+.|++|.++.++
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            6999999999999999999999876665543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=84.20  E-value=0.4  Score=44.39  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~-~V~l~d~~~~  181 (496)
                      |||.|.|+ |.+|+.++..|+..|+ +|+.+|+...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~   36 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD   36 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc
Confidence            58999977 9999999999999995 8999998654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.89  E-value=0.44  Score=42.01  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=30.1

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~  181 (496)
                      |+|.|.|+ |-+|.++|..|++.|++|.+.|+++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57888887 77999999999999999999998653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.76  E-value=0.37  Score=41.41  Aligned_cols=30  Identities=23%  Similarity=0.149  Sum_probs=28.5

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      |.|||+|.-|..-|..+++.|.+|.++|..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            899999999999999999999999999964

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.66  E-value=0.35  Score=44.60  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      -.-|.|||+|.-|.+.|..++++|.+|++++..+
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3569999999999999999999999999999754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=83.51  E-value=0.57  Score=42.48  Aligned_cols=102  Identities=18%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~~  223 (496)
                      ++|.|||+|.-  +++..+++. + -+|+++|+|++.++.+.+.....      .+....       .|+... .| .+-
T Consensus        77 ~~vLiiGgG~G--~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~------~~~~~d-------~r~~i~~~D~~~~  141 (274)
T d1iy9a_          77 EHVLVVGGGDG--GVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLDD-------PRVDVQVDDGFMH  141 (274)
T ss_dssp             CEEEEESCTTC--HHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTTS-------TTEEEEESCSHHH
T ss_pred             ceEEecCCCCc--HHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh------cccccC-------CCeEEEechHHHH
Confidence            58999999864  445555554 4 48999999999988776543211      121111       122221 11 111


Q ss_pred             c----cCCCEEEEeccCChH-----HHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 F----KDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 ~----~~aDlVIeav~e~~~-----~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +    +.-|+||.-.++...     ..++.++.+.+.++++.+++.++.+
T Consensus       142 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         142 IAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             HHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            1    346888865543211     2557899999999999999887643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.32  E-value=0.28  Score=45.25  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHH
Q 010966          148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEK  181 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~  181 (496)
                      ..|.|||+|.-|.+.|..|++  .|++|+++|.++.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            369999999999999999995  4999999998753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.27  E-value=0.46  Score=44.03  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 010966          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      .++|-|.|+ |.+|+.++..|.+.|++|+.+|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            467888877 99999999999999999999986

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.18  E-value=0.83  Score=41.70  Aligned_cols=104  Identities=14%  Similarity=0.203  Sum_probs=63.5

Q ss_pred             ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---
Q 010966          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---  220 (496)
Q Consensus       147 ~~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---  220 (496)
                      .++|.|||+|..|  ++..+++. +. +|+++|++++.++.+++.....- ...+.            .+++.. .|   
T Consensus        81 pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~------------~r~~i~~~Da~~  145 (290)
T d1xj5a_          81 PKKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-IGYED------------PRVNLVIGDGVA  145 (290)
T ss_dssp             CCEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGS------------TTEEEEESCHHH
T ss_pred             CcceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-ccccC------------CCcEEEEccHHH
Confidence            3689999999654  45556655 44 79999999999888765432110 00011            122111 11   


Q ss_pred             -cccc--cCCCEEEEeccCC-----hHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966          221 -YESF--KDVDMVIEAIIEN-----VSLKQQIFADLEKYCPPHCILASNTSTI  265 (496)
Q Consensus       221 -~~~~--~~aDlVIeav~e~-----~~~k~~v~~~l~~~~~~~~il~sntS~~  265 (496)
                       +...  +.-|+||.-+++.     .-...+.++.+.+.++++-+++.++.+.
T Consensus       146 ~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         146 FLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             HHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence             1111  2468888655432     1134678899999999999999886543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.41  Score=44.33  Aligned_cols=33  Identities=33%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             eEEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVA-ILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~-VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      +||+ |.|+ |.+|+.++..|..+||+|+.+|+.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5884 7666 9999999999999999999999864

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.99  E-value=0.46  Score=43.50  Aligned_cols=30  Identities=30%  Similarity=0.536  Sum_probs=27.6

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEV  178 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~  178 (496)
                      ||.|.|+ |.+|+.++..|.++|++|+.+|.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888877 99999999999999999999984

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.71  E-value=2.4  Score=35.04  Aligned_cols=39  Identities=13%  Similarity=0.068  Sum_probs=33.4

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  186 (496)
                      .+|.|.|+ |.+|...++.+...|.+|+..+.++++.+.+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   66 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence            37999885 9999999998888899999999998876653

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.71  E-value=0.48  Score=43.61  Aligned_cols=33  Identities=27%  Similarity=0.136  Sum_probs=28.3

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      ++|-|.|+ |.+|+.++..|++.||+|+.+|+..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            35666676 9999999999999999999999853

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.58  E-value=0.88  Score=40.52  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=28.4

Q ss_pred             EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 010966          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE  184 (496)
Q Consensus       149 kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~  184 (496)
                      .|.|.|+ +-+|..+|..|++.|.+|++.+++.+..+
T Consensus         7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~   43 (254)
T d1sbya1           7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT   43 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH
Confidence            4556666 67999999999999999988877665443

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.55  E-value=0.44  Score=42.32  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             ceEEEEEeC-ChhhHHHHHHHH---hCCCcEEEEeCCHHHHHHH
Q 010966          147 VKKVAILGG-GLMGSGIATALI---LSNYPVILKEVNEKFLEAG  186 (496)
Q Consensus       147 ~~kV~VIGa-G~mG~~iA~~la---~~G~~V~l~d~~~~~~~~~  186 (496)
                      |++|.|.|+ .-+|.++|..|+   +.|++|++.+++++.++..
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   45 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            578888888 779999998886   5799999999999877653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.37  E-value=0.55  Score=41.78  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=29.2

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      -|.|||+|.-|...|..+++.|.+|.++|.+
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4789999999999999999999999999975

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.23  E-value=1.3  Score=40.33  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~~  223 (496)
                      ++|.|||+|.-  +++..+++. + .+|+++|++++.++.+.+...... .....            .|++.. .| .+-
T Consensus        91 k~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d------------~rv~v~~~Da~~~  155 (295)
T d1inla_          91 KKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDD------------PRAEIVIANGAEY  155 (295)
T ss_dssp             CEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGC------------TTEEEEESCHHHH
T ss_pred             ceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccC------------CCcEEEhhhHHHH
Confidence            58999999865  456666664 3 479999999999887765432111 00011            122111 11 111


Q ss_pred             c----cCCCEEEEeccCCh------HHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 F----KDVDMVIEAIIENV------SLKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 ~----~~aDlVIeav~e~~------~~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +    +.-|+||.-.++..      -...+.++.+.+.+.++-+++.++.+
T Consensus       156 l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         156 VRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             GGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            1    24688886554321      12467889999999999999887654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=82.15  E-value=0.49  Score=44.52  Aligned_cols=31  Identities=29%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      -+.|||+|.-|+-+|..|+++|++|.+++.-
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            4789999999999999999999999999874

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.51  E-value=0.55  Score=37.25  Aligned_cols=37  Identities=32%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             cceEEEEEeCCh-----------hhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          146 RVKKVAILGGGL-----------MGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       146 ~~~kV~VIGaG~-----------mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      .++||.|||+|.           .+...+..|.+.|+++++++-||+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            478999999985           5677778888899999999999975

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.43  E-value=1.3  Score=40.60  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=25.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC----CC-------cEEEEeCC
Q 010966          148 KKVAILGGGLMGSGIATALILS----NY-------PVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~----G~-------~V~l~d~~  179 (496)
                      .||.|.|+|.-|.+||..+...    |.       +++++|+.
T Consensus        26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            4899999999999999877643    43       58888864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.34  E-value=0.76  Score=41.57  Aligned_cols=38  Identities=16%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             eEEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966          148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA  185 (496)
Q Consensus       148 ~kV~VIGaG---~mG~~iA~~la~~G~~V~l~d~~~~~~~~  185 (496)
                      +++.|.|++   -+|.+||..|++.|.+|++.+++++....
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~   49 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIF   49 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhh
Confidence            466677885   49999999999999999999998765443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.29  E-value=0.47  Score=43.74  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966          150 VAILGGGLMGSGIATALILSNYPVILKEVNE  180 (496)
Q Consensus       150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~  180 (496)
                      |.|||+|.-|.+-|..++++|.+|++++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            9999999999999999999999999999764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=81.21  E-value=1.6  Score=37.38  Aligned_cols=93  Identities=15%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCcccc--
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF--  224 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--  224 (496)
                      ++|.=||+|. | ..+..++..|.+|+.+|++++.++.+.+.+..       .+          ..++.+. .+.+.+  
T Consensus        17 ~rVLDiGcG~-G-~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-------~~----------~~~i~~~~~d~~~l~~   77 (231)
T d1vl5a_          17 EEVLDVATGG-G-HVANAFAPFVKKVVAFDLTEDILKVARAFIEG-------NG----------HQQVEYVQGDAEQMPF   77 (231)
T ss_dssp             CEEEEETCTT-C-HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-------TT----------CCSEEEEECCC-CCCS
T ss_pred             CEEEEecccC-c-HHHHHHHHhCCEEEEEECCHHHHhhhhhcccc-------cc----------cccccccccccccccc
Confidence            5899999994 3 33456788899999999999998877654321       12          1223221 222222  


Q ss_pred             --cCCCEEEEe-ccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          225 --KDVDMVIEA-IIENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       225 --~~aDlVIea-v~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                        ...|+|+-. +.+...-...+++++...++|+..++
T Consensus        78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence              346888743 22222224577899999998877443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=81.01  E-value=0.37  Score=44.02  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCC
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVN  179 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~  179 (496)
                      +||.|.|+ |.+|+.|+..|++.|+.|++.|..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            58999987 999999999999999999988754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.91  E-value=1  Score=41.02  Aligned_cols=102  Identities=19%  Similarity=0.247  Sum_probs=60.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC-ccc
Q 010966          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YES  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~~  223 (496)
                      ++|.|||+|.-  +++..+.+.  ..+|+++|++++.++.+++...... ...+.            .|++.. .| .+-
T Consensus        80 k~vLiiGgG~G--~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d------------~rv~i~~~Da~~~  144 (285)
T d2o07a1          80 RKVLIIGGGDG--GVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSS------------SKLTLHVGDGFEF  144 (285)
T ss_dssp             CEEEEEECTTS--HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGC------------TTEEEEESCHHHH
T ss_pred             CeEEEeCCCch--HHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-cccCC------------CCceEEEccHHHH
Confidence            68999999964  455666664  4589999999999888765432111 00111            122221 11 111


Q ss_pred             c----cCCCEEEEeccCChH-----HHHHHHHHHHhhCCCCeeEeccCCc
Q 010966          224 F----KDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST  264 (496)
Q Consensus       224 ~----~~aDlVIeav~e~~~-----~k~~v~~~l~~~~~~~~il~sntS~  264 (496)
                      +    +.-|+||.-.++...     ..++.++.+.+.++++-+++.++.+
T Consensus       145 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         145 MKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             HHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            1    346888865543221     3446788899999999999887644

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.62  E-value=0.54  Score=41.58  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (496)
Q Consensus       148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~  182 (496)
                      ++|.|.|+ +-+|.++|..|++.|++|++.|++.+.
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            34555566 679999999999999999999998654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.59  E-value=7.4  Score=31.56  Aligned_cols=69  Identities=17%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966          148 KKVAILGGG-LMGSGIATALILSNYPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (496)
Q Consensus       148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (496)
                      .||++||-| ++..|++..+..-|.+|++...     +++..+...+..                  ......+..+.+.
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~d~   66 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA------------------AESGGSFELLHDP   66 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH------------------HHHTCEEEEESCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh------------------hcccceEEEecCH
Confidence            489999984 4667888888888999999865     334333322110                  1111345556665


Q ss_pred             -ccccCCCEEEEec
Q 010966          222 -ESFKDVDMVIEAI  234 (496)
Q Consensus       222 -~~~~~aDlVIeav  234 (496)
                       ++++++|+|+.-.
T Consensus        67 ~ea~~~adviy~~~   80 (163)
T d1pvva2          67 VKAVKDADVIYTDV   80 (163)
T ss_dssp             HHHTTTCSEEEECC
T ss_pred             HHHhhhccEEeecc
Confidence             5689999998643

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.45  E-value=1.4  Score=35.06  Aligned_cols=95  Identities=23%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             eEEEEEeCC----------hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ce
Q 010966          148 KKVAILGGG----------LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL  215 (496)
Q Consensus       148 ~kV~VIGaG----------~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i  215 (496)
                      +||+|+|.-          .-.-.++..|...|++|.+||..-+..+..              + ...+.......  ..
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~--------------~-~~~~~~~~~~~~~~~   78 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVH--------------G-ANKEYIESKIPHVSS   78 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTS--------------S-SCHHHHHHTSHHHHT
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHh--------------h-hhhhhhhhccccccc
Confidence            589999873          456788899999999999999743321100              0 00000000000  11


Q ss_pred             ecccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966          216 TGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (496)
Q Consensus       216 ~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS  263 (496)
                      ...+++ +.++++|+||.+++-+.      |.++...+.++.+|.....
T Consensus        79 ~~~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~  121 (136)
T d1mv8a3          79 LLVSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVG  121 (136)
T ss_dssp             TBCSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSS
T ss_pred             eeehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCC
Confidence            123343 56789999999997542      3344445566666665443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.09  E-value=1.9  Score=37.56  Aligned_cols=92  Identities=11%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc---
Q 010966          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES---  223 (496)
Q Consensus       148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---  223 (496)
                      ++|.=||+|+  +.++..|++.|.+|+.+|.+++.++.+.++...       .|.           ++.+ ..|...   
T Consensus        39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~-------~~~-----------~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS-------QGL-----------KPRLACQDISNLNI   98 (246)
T ss_dssp             TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH-------TTC-----------CCEEECCCGGGCCC
T ss_pred             CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccc-------cCc-----------cceeeccchhhhcc
Confidence            4788899984  246667888999999999999999887654321       121           1111 122221   


Q ss_pred             ccCCCEEEEe---c--cCChHHHHHHHHHHHhhCCCCeeEe
Q 010966          224 FKDVDMVIEA---I--IENVSLKQQIFADLEKYCPPHCILA  259 (496)
Q Consensus       224 ~~~aDlVIea---v--~e~~~~k~~v~~~l~~~~~~~~il~  259 (496)
                      -+..|+|+-.   +  ..+.+-...+++++.++++|+-+++
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            2346988842   1  1234445678899999998877554