Citrus Sinensis ID: 010978

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIRLENKPEITSDEAVVENPVQ
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEcccHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccc
Coil and Loop (DISEMBL)
MNHHSIISvtknesnkgvsqsccsalspihnfqtecqslstgeypfphpspfirkeslsspnrmqastvvpkenglistsdspispgshfqhskggfsrssVFCTSLYlsssassethrqignfpflphprtfnqsvsavdstksslLFSEDMGNAYQEEHSESLMKGflnfpedasdgsfpgvtcmgerlglnehlelqflsdeldiditdhgenprldeiydapksslkppmglsckenyvssappvdalsshtspasatahkprmrwtpeLHECFVEAVnkldgpekatPKAVLKLMNVEGLTIYHVKSHLQKYRLAkympekkeekktcsseekkatssiesdgrkkgsIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQqkdgsatilpqaqslstitngskdseqqpsspsftvsailspeqpaesktessstsllskhkatdsreskpdACLKRIRlenkpeitsdeavvenpvq
Flexible Loop (DISEMBL)
MNHHSIISvtknesnkgvSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKympekkeekktcsseekkatssiesdgrkkgSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEqqkdgsatilPQAQSLSTITNGSKDSEQQPSSPSFTVSAILSPEqpaesktessstsllskhkatdsreskpdaclKRIRlenkpeitsdeavvenpvq
Low Complexity Region (SEG)
MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTslylsssassETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDalsshtspasatahKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPekkeekktcsseekkatssIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTVSAILSPEQPAesktessstsllskHKATDSRESKPDACLKRIRLENKPEITSDEAVVENPVQ
Disordered region (IsUnstruct)
*************************L**IHNF*********************************************************************VFCTSLYL***********************************************************************FPGVTCMGERLGLNEHLELQFLSDELDIDIT**********************************************************WTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKY***************************************************LEVQRALQLRIEEHARYLEKIV*****************************************************************************************************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************L********************************************************************************************************WTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY***********************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MNHHSIISVT*************SALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSP************GFSRSSVFCTSLYL*********RQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPV*****************RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP***************************GSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLST******************VSAIL******************************PDACLKRIRLENKPEITSD*********
Disordered Region (DISPRO)
**HHSIISVTKNESNKGVSQSCCSALSP*************************************************************************************************************************************SESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITD*****************************************************PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM*****************************SIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDG**********************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIRLENKPEITSDEAVVENPVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.298	0.358	0.614	8e-44
Q9SAK5	358	Myb family transcription	no	no	0.262	0.363	0.488	2e-31
Q700D9	255	Putative Myb family trans	no	no	0.106	0.207	0.716	7e-16
Q9C616	388	Probable transcription fa	no	no	0.167	0.213	0.479	2e-15
Q0J235	532	Probable transcription fa	no	no	0.157	0.146	0.494	1e-14
Q941I2	322	Probable transcription fa	no	no	0.139	0.214	0.536	2e-14
Q9FJV5	276	Probable transcription fa	no	no	0.112	0.202	0.660	2e-14
Q93WJ9	403	Transcription repressor K	no	no	0.129	0.158	0.578	4e-14
Q940D0	690	Two-component response re	no	no	0.108	0.078	0.636	3e-12
Q9FGT7	635	Two-component response re	no	no	0.147	0.114	0.506	6e-12

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  178 bits (452), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/153 (61%), Positives = 113/153 (73%), Gaps = 5/153 (3%)

Query: 250 DALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYH 309
           D LS   S +S    K RMRWTPELHE FVEAVN+L G E+ATPKAVLKL+N  GLTIYH
Sbjct: 216 DQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYH 275

Query: 310 VKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATS--SIESDGRKKGSIQFTEALRMQMEVQ 367
           VKSHLQKYR A+Y PE  E   T   +EKK TS   I+S   K  S++ T+ALR+QMEVQ
Sbjct: 276 VKSHLQKYRTARYKPETSE--VTGEPQEKKMTSIEDIKSLDMKT-SVEITQALRLQMEVQ 332

Query: 368 KQLHEQLEVQRALQLRIEEHARYLEKIVAEQQK 400
           K+LHEQLE+QR+LQL+IE+  RYL+ +  +QQK
Sbjct: 333 KRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
           KPR+RWT ELHE FV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL K  P
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92

Query: 325 EKKEEKKTCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRI 384
            K+    +     + +   I+ +      +       MQMEVQ++LHEQLEVQR LQLRI
Sbjct: 93  HKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRI 152

Query: 385 EEHARYLEKIV 395
           E   +Y++ I+
Sbjct: 153 EAQGKYMQSIL 163

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 43/53 (81%)

Query: 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318
           PR+RWTPELH  FV AV+ L G  KATPK VLK+M+V+GLTI HVKSHLQ YR
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 13/96 (13%)

Query: 258 PASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317
           PA  +   PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ Y
Sbjct: 206 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

Query: 318 RLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGS 353
           R             T  + +K A SS +SD  + GS
Sbjct: 266 R-------------TVKTTDKAAASSGQSDVYENGS 288

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 13/91 (14%)

Query: 258 PASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317
           PA  +   PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ Y
Sbjct: 317 PAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 376

Query: 318 RLAKYMPEKKEEKKTCSSEEKKATSSIESDG 348
           R             T  S +K A SS  +DG
Sbjct: 377 R-------------TVKSTDKPAASSGPADG 394

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 51/82 (62%), Gaps = 13/82 (15%)

Query: 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPE 325
           PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ YR       
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYR------- 217

Query: 326 KKEEKKTCSSEEKKATSSIESD 347
                 T  S EK  TSS +SD
Sbjct: 218 ------TIKSTEKPTTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 42/56 (75%)

Query: 266 PRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
           PRMRWT  LH  FV AV  L G E+ATPK+VL+LMNV+ LT+ HVKSHLQ YR  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 44/64 (68%)

Query: 258 PASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317
           P   +   PRMRWT  LH  FV AV  L G E+ATPK+VL+LM+V+ LT+ HVKSHLQ Y
Sbjct: 212 PTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 271

Query: 318 RLAK 321
           R  K
Sbjct: 272 RTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319
           KPR+ W+ ELH+ FV AVN+L G EKA PK +L+LMNV GLT  +V SHLQKYR+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 259 ASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318
            S T  KPR+ W+ ELH+ FV AV +L G +KA PK +L LM++EGLT  +V SHLQKYR
Sbjct: 188 GSGTRKKPRVVWSQELHQKFVSAVQQL-GLDKAVPKKILDLMSIEGLTRENVASHLQKYR 246

Query: 319 L-AKYMPEKKEEKKT 332
           L  K + E +++  T
Sbjct: 247 LYLKKIDEGQQQNMT 261

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
147841484	503	hypothetical protein VITISV_010096 [Viti	0.965	0.952	0.586	1e-143
359483278	502	PREDICTED: uncharacterized protein LOC10	0.981	0.970	0.604	1e-142
255544460	536	transcription factor, putative [Ricinus	0.947	0.876	0.597	1e-142
224122790	423	predicted protein [Populus trichocarpa]	0.810	0.950	0.662	1e-138
297735683	462	unnamed protein product [Vitis vinifera]	0.913	0.980	0.580	1e-138
224097311	408	predicted protein [Populus trichocarpa]	0.800	0.973	0.662	1e-137
297834112	445	hypothetical protein ARALYDRAFT_478672 [	0.875	0.975	0.508	1e-111
18399836	449	myb-like HTH transcriptional regulator f	0.875	0.966	0.495	1e-110
15795136	554	transfactor-like protein [Arabidopsis th	0.875	0.783	0.504	1e-110
21536970	443	transfactor-like protein [Arabidopsis th	0.875	0.979	0.493	1e-110

>gi|147841484|emb|CAN64238.1| hypothetical protein VITISV_010096 [Vitis vinifera]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 305/520 (58%), Positives = 357/520 (68%), Gaps = 41/520 (7%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHN-----------FQTECQSLSTGEYPFPHP 49
           MNHHS++S  + ES KG +QS C+A+SPIHN           F+++C S           
Sbjct: 1   MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEGQNSFKSDCSSSH--------- 51

Query: 50  SPFIRKESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYL 109
           S F + E     N MQAS V P++    S   S +S  +  Q+ K  FSRSSVFCTSLYL
Sbjct: 52  SRFTQTELPGPANFMQASVVQPQKLCSKSGPYSSVSSDTDAQYPKCTFSRSSVFCTSLYL 111

Query: 110 SSSASSETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGF 169
           SSS+S+ETHR +GN PFLPHP    QS+SAV STK+  L S D    Y E +SE +MKGF
Sbjct: 112 SSSSSTETHRPLGNLPFLPHPSMSYQSISAVHSTKTPFL-SGDSSGLYDEGNSEDMMKGF 170

Query: 170 LNFPEDASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSS 229
           LN   DASD SF  + C  + +  +E LELQFLSDELDI I D+GENPRLDEIY+ P+ S
Sbjct: 171 LNLSSDASDESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDS 230

Query: 230 LKPPM--GLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDG 287
             P M  GL+  +N+ S AP  DA S   SP +A AHKPRMRWTPELHE F+EAVNKL+G
Sbjct: 231 STPAMALGLTVNQNHQSVAPSADASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEG 290

Query: 288 PE---------KATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEK 338
            E         +ATPK VLKLMN+EGLTIYHVKSHLQKYRLAKYMPE+KE+KK   SEEK
Sbjct: 291 AESLPILLWNVEATPKGVLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEK 350

Query: 339 KATSSI-ESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAE 397
           KA SS  ESDGR+KG+IQ TEALR+QMEVQKQLHEQLEVQR LQLRIEEHARYL KI+ E
Sbjct: 351 KAASSNNESDGRRKGNIQITEALRLQMEVQKQLHEQLEVQRTLQLRIEEHARYLHKILEE 410

Query: 398 QQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLS 457
           QQK GSA I P   SLS+ TN   DSE+QPSSPS T +      QPAE K +SSS    S
Sbjct: 411 QQKAGSALISP--PSLSSPTNPHPDSERQPSSPSATTTL----PQPAECKADSSSPP-PS 463

Query: 458 KHK-ATDSRESKPDACLKRIRLENKPEITSDEAVVENPVQ 496
           KHK AT++ +S+  AC KR RLE+ PE  SDEAVVENP Q
Sbjct: 464 KHKAATETTDSEQQACSKRSRLESNPESVSDEAVVENPSQ 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483278|ref|XP_002269813.2| PREDICTED: uncharacterized protein LOC100244458 [Vitis vinifera]

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 304/503 (60%), Positives = 356/503 (70%), Gaps = 16/503 (3%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNF---QTECQSLSTGEYPFPHPSPFIRKES 57
           MNHHS++S  + ES KG +QS C+A+SPIHN    + E Q+    +    H S F + E 
Sbjct: 9   MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEGQNSFKSDCSSSH-SRFTQTEL 67

Query: 58  LSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSET 117
               N MQAS V P++    S   S +S  +  Q+ K  FSRSSVFCTSLYLSSS+S+ET
Sbjct: 68  PGPANFMQASVVQPQKLCSKSGPYSSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSSTET 127

Query: 118 HRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDAS 177
           HR +GN PFLPHP    QS+SAV STK+  L S D    Y E +SE +MKGFLN   DAS
Sbjct: 128 HRPLGNLPFLPHPSMSYQSISAVHSTKTPFL-SGDSSGLYDEGNSEDMMKGFLNLSSDAS 186

Query: 178 DGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPM--G 235
           D SF  + C  + +  +E LELQFLSDELDI I D+GENPRLDEIY+ P+ S  P M  G
Sbjct: 187 DESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMALG 246

Query: 236 LSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKA 295
           L+  +N+ S AP  DA S   SP +A AHKPRMRWTPELHE F+EAVNKL+G EKATPK 
Sbjct: 247 LTVNQNHQSVAPSTDASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAEKATPKG 306

Query: 296 VLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSS-IESDGRKKGSI 354
           VLKLMN+EGLTIYHVKSHLQKYRLAKYMPE+KE+KK   SEEKKA SS  ESDGR+KG+I
Sbjct: 307 VLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNESDGRRKGNI 366

Query: 355 QFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLS 414
           Q TEALR+QMEVQKQLHEQLEVQR LQLRIEEHARYL KI+ EQQK GSA I     SLS
Sbjct: 367 QITEALRLQMEVQKQLHEQLEVQRTLQLRIEEHARYLHKILEEQQKAGSALI--SPPSLS 424

Query: 415 TITNGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHK-ATDSRESKPDACL 473
           + T+   DSE+QPSSPS T +      QPAE K +SSS    SKHK AT++ +S+  AC 
Sbjct: 425 SPTSPHPDSERQPSSPSATTTL----PQPAECKADSSSPP-PSKHKAATETTDSEQQACS 479

Query: 474 KRIRLENKPEITSDEAVVENPVQ 496
           KR RLE+ PE  SDEAVVENP Q
Sbjct: 480 KRSRLESNPEPVSDEAVVENPSQ 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544460|ref|XP_002513291.1| transcription factor, putative [Ricinus communis] gi|223547199|gb|EEF48694.1| transcription factor, putative [Ricinus communis]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/487 (59%), Positives = 348/487 (71%), Gaps = 17/487 (3%)

Query: 14  SNKGVSQSCCSALSPIHNF---QTECQSLSTGEYPFPHPSPFIRKESLSSPNRMQASTVV 70
           S+KG++Q   + LSP+H+F   ++E QS  T E+    PSPF+  +SLS PN MQ S V 
Sbjct: 63  SSKGITQPYFTTLSPVHDFFNSESEGQSCLTSEFSSSRPSPFMLTDSLS-PNTMQ-SIVQ 120

Query: 71  PKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHP 130
           P +  L S  D P+SP SH QHSK  F RSSVFCTSLYLSSS+SSET+RQ+GN PFLPHP
Sbjct: 121 PPKYFLKSGPDMPLSPASHIQHSKSTFQRSSVFCTSLYLSSSSSSETNRQLGNLPFLPHP 180

Query: 131 RTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGER 190
                S+SA+DSTKS LLF++D+ N Y EEHS+ LMK F+NFP DAS  SF G+TC  + 
Sbjct: 181 SAHAHSLSAIDSTKSPLLFTDDISNPYDEEHSDCLMKDFVNFPGDASRSSFHGMTCASDN 240

Query: 191 LGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVD 250
           L L + LELQFLSDELDI ITDHGENPR+DEIY+ P++S  P +G +C  N  S  P  D
Sbjct: 241 LVLADQLELQFLSDELDIAITDHGENPRVDEIYETPEASSNPAIGSTCNLNVASVKPSAD 300

Query: 251 ALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHV 310
           A SSH SP +A  HKPRMRWTPELHE FVEA+ KL G EKATPK VLKLMNVEGLTIYHV
Sbjct: 301 APSSHPSPGTAAVHKPRMRWTPELHESFVEAIIKLGGAEKATPKGVLKLMNVEGLTIYHV 360

Query: 311 KSHLQKYRLAKYMPEKKEEKK-TCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQ 369
           KSHLQKYR+AKY+P+KKEEKK +CS E+K A+SS ESD +KKG  Q TEALRMQMEVQKQ
Sbjct: 361 KSHLQKYRIAKYLPDKKEEKKASCSEEKKAASSSTESDNQKKGMTQITEALRMQMEVQKQ 420

Query: 370 LHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSS 429
           LHEQLEVQRALQLRIEEHARYL+KI+ EQQK G  ++ P  + LS++TN  + S   PS 
Sbjct: 421 LHEQLEVQRALQLRIEEHARYLQKILEEQQKAGGTSLSP--KDLSSLTNPPEASVLPPSQ 478

Query: 430 PSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIRLENKPEITSDEA 489
              T    L P    +S    + +S   K    DS   +P    K+IR+E KPE   +EA
Sbjct: 479 EVVT----LHP----QSTESKTVSSSSKKKPTVDSEIEQPQRD-KKIRVEKKPESAKEEA 529

Query: 490 VVENPVQ 496
            VE+PVQ
Sbjct: 530 AVESPVQ 536

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122790|ref|XP_002330480.1| predicted protein [Populus trichocarpa] gi|222871892|gb|EEF09023.1| predicted protein [Populus trichocarpa]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/415 (66%), Positives = 310/415 (74%), Gaps = 13/415 (3%)

Query: 64  MQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGN 123
           MQ STV  ++    S  DSP+S   H Q SK  F RSSVFCTSLYLSSS+ SET+RQ+GN
Sbjct: 1   MQVSTVQHQKYHPKSGPDSPVSLAYHVQLSKSTFQRSSVFCTSLYLSSSSISETNRQLGN 60

Query: 124 FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPG 183
           FPFLPHP T++QSVSA DSTKS  L SED+ + + EE S+  M  FLN   DAS+G F G
Sbjct: 61  FPFLPHPPTYSQSVSATDSTKSPQLVSEDLSSPFDEERSDGFMIDFLNLSGDASEGGFHG 120

Query: 184 VTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYV 243
           + C  + L L E LELQFLSDELDI ITDHGENPRLDEIY  P++S KP  G +C +N+ 
Sbjct: 121 MNCTSDNLELTEQLELQFLSDELDIAITDHGENPRLDEIYGTPETSSKPVTGFACYQNFP 180

Query: 244 SSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVE 303
           S APPVDALSS  S  S+TAHKPRMRWT ELHE F++AVNKLDG EKATPK VLKLMNVE
Sbjct: 181 SIAPPVDALSSQPSLGSSTAHKPRMRWTTELHERFLDAVNKLDGAEKATPKGVLKLMNVE 240

Query: 304 GLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATS-SIESDGRKKGSIQFTEALRM 362
           GLTIYHVKSHLQKYRLAKY PEKKEEKK   SEEKKA S  I+ DG+KKG+IQ TEALRM
Sbjct: 241 GLTIYHVKSHLQKYRLAKYFPEKKEEKKASCSEEKKAVSIIIDDDGKKKGTIQITEALRM 300

Query: 363 QMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKD 422
           QMEVQKQLHEQLEVQR LQLRIEEHARYL+KI+ EQQK GSA + P  +SLS++T+  KD
Sbjct: 301 QMEVQKQLHEQLEVQRTLQLRIEEHARYLQKIIEEQQKAGSALLSP--KSLSSVTDPPKD 358

Query: 423 SEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIR 477
           SE  P SPS            AESKT+SSS    SKHKATDS   +  A  KRIR
Sbjct: 359 SELPPPSPSAG----------AESKTDSSSALPSSKHKATDSENFEKQASEKRIR 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735683|emb|CBI18370.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 293/505 (58%), Positives = 343/505 (67%), Gaps = 52/505 (10%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNF-----QTECQSLSTGEYPFPHPSPFIRK 55
           MNHHS++S  + ES KG +QS C+A+SPIHN      + + Q L +   P+         
Sbjct: 1   MNHHSVLSAKQTESTKGFTQSYCAAVSPIHNLLNVELEVQPQKLCSKSGPY--------- 51

Query: 56  ESLSSPNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASS 115
                                     S +S  +  Q+ K  FSRSSVFCTSLYLSSS+S+
Sbjct: 52  --------------------------SSVSSDTDAQYPKCTFSRSSVFCTSLYLSSSSST 85

Query: 116 ETHRQIGNFPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPED 175
           ETHR +GN PFLPHP    QS+SAV STK+  L S D    Y E +SE +MKGFLN   D
Sbjct: 86  ETHRPLGNLPFLPHPSMSYQSISAVHSTKTPFL-SGDSSGLYDEGNSEDMMKGFLNLSSD 144

Query: 176 ASDGSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPM- 234
           ASD SF  + C  + +  +E LELQFLSDELDI I D+GENPRLDEIY+ P+ S  P M 
Sbjct: 145 ASDESFHVMNCASDNITFSEQLELQFLSDELDIAIADNGENPRLDEIYEMPQDSSTPAMA 204

Query: 235 -GLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATP 293
            GL+  +N+ S AP  DA S   SP +A AHKPRMRWTPELHE F+EAVNKL+G EKATP
Sbjct: 205 LGLTVNQNHQSVAPSTDASSGQPSPGAAAAHKPRMRWTPELHERFLEAVNKLEGAEKATP 264

Query: 294 KAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKKATSS-IESDGRKKG 352
           K VLKLMN+EGLTIYHVKSHLQKYRLAKYMPE+KE+KK   SEEKKA SS  ESDGR+KG
Sbjct: 265 KGVLKLMNIEGLTIYHVKSHLQKYRLAKYMPERKEDKKASGSEEKKAASSNNESDGRRKG 324

Query: 353 SIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQS 412
           +IQ TEALR+QMEVQKQLHEQLEVQR LQLRIEEHARYL KI+ EQQK GSA I     S
Sbjct: 325 NIQITEALRLQMEVQKQLHEQLEVQRTLQLRIEEHARYLHKILEEQQKAGSALI--SPPS 382

Query: 413 LSTITNGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHK-ATDSRESKPDA 471
           LS+ T+   DSE+QPSSPS T +      QPAE K +SSS    SKHK AT++ +S+  A
Sbjct: 383 LSSPTSPHPDSERQPSSPSATTTL----PQPAECKADSSSPP-PSKHKAATETTDSEQQA 437

Query: 472 CLKRIRLENKPEITSDEAVVENPVQ 496
           C KR RLE+ PE  SDEAVVENP Q
Sbjct: 438 CSKRSRLESNPEPVSDEAVVENPSQ 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097311|ref|XP_002310903.1| predicted protein [Populus trichocarpa] gi|222853806|gb|EEE91353.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 275/415 (66%), Positives = 314/415 (75%), Gaps = 18/415 (4%)

Query: 81  DSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSVSAV 140
           DSP+SP SH Q SK  F RSSVFCTSLYLSSS+ SET+RQ+GN PFLPHP T++ SVSA 
Sbjct: 9   DSPLSPTSHVQSSKSTFQRSSVFCTSLYLSSSSISETNRQLGNLPFLPHPPTYSHSVSAT 68

Query: 141 DSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDASDGSFPGVTCMGERLGLNEHLELQ 200
           DSTKS LLFSED+ N   EEHS++ MK FLN   +AS+GSF G+   G+ L L E LELQ
Sbjct: 69  DSTKSPLLFSEDLSNQCDEEHSDAFMKDFLNLSGNASEGSFHGMNYTGDNLELTEQLELQ 128

Query: 201 FLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDALSSHTSPAS 260
           FLSDEL+I ITDHGENP LDEIY   ++S KP  G +C ++    +P VDALSSH SP S
Sbjct: 129 FLSDELEIAITDHGENPGLDEIYGTHETSSKPATGFACNQD----SPSVDALSSHPSPGS 184

Query: 261 ATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320
           +TAHKPRMRWTPELHE FVEAVNKLDG EKATPK VLKLMNV+GLTIYHVKSHLQKYRLA
Sbjct: 185 STAHKPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVKGLTIYHVKSHLQKYRLA 244

Query: 321 KYMPEKKEEKK-TCSSEEKKATSSIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRA 379
           KY+PEKKEEKK +CS E+K A+ +I+ D +KKG+IQ TEALRMQMEVQKQLHEQLEVQR 
Sbjct: 245 KYLPEKKEEKKASCSEEKKVASINIDGDVKKKGTIQITEALRMQMEVQKQLHEQLEVQRT 304

Query: 380 LQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTVSAILS 439
           LQLRIEEHARYL+KI+ EQQ  GSA + P  +SLS  TN  KDSE  P SPS        
Sbjct: 305 LQLRIEEHARYLQKII-EQQNAGSALLSP--KSLSASTNPPKDSELPPPSPSAV------ 355

Query: 440 PEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIRLENKPEITSDEAVVENP 494
               AESKT+ SS    SKHKA DS   +     KRIRLE K E  S++AVVE+P
Sbjct: 356 ----AESKTDLSSPLPSSKHKAADSDNFEKQTSEKRIRLEEKSESASEDAVVEDP 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834112|ref|XP_002884938.1| hypothetical protein ARALYDRAFT_478672 [Arabidopsis lyrata subsp. lyrata] gi|297330778|gb|EFH61197.1| hypothetical protein ARALYDRAFT_478672 [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/488 (50%), Positives = 314/488 (64%), Gaps = 54/488 (11%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN +S++S   +E NKGV Q+C ++ SP+HNF            P    SPFIR +S  S
Sbjct: 1   MNRYSLVSTATDECNKGVVQTCSTSPSPVHNF--------LNVQPEHRKSPFIRSQSPDS 52

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
             ++    +                       S+  FSRSS FCT+LYLSSS++SET + 
Sbjct: 53  TGQLWPKNI-----------------------SQSTFSRSSTFCTNLYLSSSSTSETQKH 89

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P +++ S S V+S +S  +FSED+GN    ++S SL+K FLN   DA SD
Sbjct: 90  LGNSLPFLPDPSSYSHSASGVESARSPSIFSEDLGNQCDGDNSGSLLKDFLNLSGDACSD 149

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +   P   LS 
Sbjct: 150 GGFHDFGCSNDSFCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLALSNPVTRLSP 209

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V+ A  +D +SSH SP SA  HK RMRWTPELH+ FV++V KL+GPEKATPKAV+K
Sbjct: 210 SQSCVAGAMSIDVVSSHPSPGSAANHKTRMRWTPELHDSFVKSVIKLEGPEKATPKAVMK 269

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKK  +SEEKK A S+ E+D +KKG+IQ T
Sbjct: 270 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKNENSEEKKLALSNSEADEKKKGAIQLT 329

Query: 358 EALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTIT 417
           EALRMQMEVQKQLHEQLEVQR LQLRIEEHA+YLEK++ EQ+K G       +Q   T+ 
Sbjct: 330 EALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQRKTGRLICSSSSQ---TVL 386

Query: 418 NGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSS--TSLLSKHKATDSRESKPDACLKR 475
           + S DS                P+    SKTE+SS   S  +K KA+++ E K ++  KR
Sbjct: 387 SPSDDS---------------IPDSQNMSKTEASSPQRSTSAKKKASETEEDKCESPQKR 431

Query: 476 IRLENKPE 483
            RLENK E
Sbjct: 432 RRLENKAE 439

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399836|ref|NP_566442.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gi|42572405|ref|NP_974298.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gi|15292911|gb|AAK92826.1| unknown protein [Arabidopsis thaliana] gi|20465679|gb|AAM20308.1| unknown protein [Arabidopsis thaliana] gi|332641760|gb|AEE75281.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gi|332641761|gb|AEE75282.1| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/486 (49%), Positives = 304/486 (62%), Gaps = 52/486 (10%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN H ++S   +E NK + Q+C S+LSP+HNF            P    +PFIR +S  S
Sbjct: 7   MNRHRLLSAATDECNKKLGQACSSSLSPVHNF--------LNVQPEHRKTPFIRSQSPDS 58

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
           P ++             ST                       FCT+LYLSSS++SET + 
Sbjct: 59  PGQLWPKNSSQSTFSRSST-----------------------FCTNLYLSSSSTSETQKH 95

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P ++  S S V+S +S  +F+ED+GN     +S SL+K FLN   DA SD
Sbjct: 96  LGNSLPFLPDPSSYTHSASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSD 155

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS 
Sbjct: 156 GDFHDFGCSNDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSP 214

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V  A  VD +SSH SP SA   K RMRWTPELHE FV+AV KL+GPEKATPKAV K
Sbjct: 215 SQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKK 274

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK+T +SEEKK A S  E+D +KKG+IQ T
Sbjct: 275 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLT 334

Query: 358 EALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTIT 417
           EALRMQMEVQKQLHEQLEVQR LQLRIEEHA+YLEK++ EQ+K G       + S  T+ 
Sbjct: 335 EALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQRKTGRWI----SSSSQTVL 390

Query: 418 NGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIR 477
           + S DS   P S + + +   SP+ P           L +++KA+++ + K ++  KR R
Sbjct: 391 SPSDDS--IPDSQNMSKTKASSPQPP-----------LPAENKASETEDDKCESPQKRRR 437

Query: 478 LENKPE 483
           LEN  E
Sbjct: 438 LENIAE 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15795136|dbj|BAB02514.1| transfactor-like protein [Arabidopsis thaliana]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/486 (50%), Positives = 310/486 (63%), Gaps = 52/486 (10%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN H ++S   +E NK + Q+C S+LSP+HNF            P    +PFIR +S  S
Sbjct: 7   MNRHRLLSAATDECNKKLGQACSSSLSPVHNF--------LNVQPEHRKTPFIRSQSPDS 58

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
           P ++      PK +   + S                  RSS FCT+LYLSSS++SET + 
Sbjct: 59  PGQLW-----PKNSSQSTFS------------------RSSTFCTNLYLSSSSTSETQKH 95

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P ++  S S V+S +S  +F+ED+GN     +S SL+K FLN   DA SD
Sbjct: 96  LGNSLPFLPDPSSYTHSASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSD 155

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS 
Sbjct: 156 GDFHDFGCSNDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSP 214

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V  A  VD +SSH SP SA   K RMRWTPELHE FV+AV KL+GPEKATPKAV K
Sbjct: 215 SQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKK 274

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK+T +SEEKK A S  E+D +KKG+IQ T
Sbjct: 275 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLT 334

Query: 358 EALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTIT 417
           EALRMQMEVQKQLHEQLEVQR LQLRIEEHA+YLEK++ EQ+K G       + S  T+ 
Sbjct: 335 EALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQRKTGRWI----SSSSQTVL 390

Query: 418 NGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIR 477
           + S DS   P S + + +   SP+ P           L +++KA+++ + K ++  KR R
Sbjct: 391 SPSDDS--IPDSQNMSKTKASSPQPP-----------LPAENKASETEDDKCESPQKRRR 437

Query: 478 LENKPE 483
           LEN  E
Sbjct: 438 LENIAE 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536970|gb|AAM61311.1| transfactor-like protein [Arabidopsis thaliana]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/486 (49%), Positives = 303/486 (62%), Gaps = 52/486 (10%)

Query: 1   MNHHSIISVTKNESNKGVSQSCCSALSPIHNFQTECQSLSTGEYPFPHPSPFIRKESLSS 60
           MN H ++S   +E NK + Q+C S+LSP+HNF            P    +PFIR +S  S
Sbjct: 1   MNRHRLLSAATDECNKKLGQACSSSLSPVHNF--------LNVQPEHRKTPFIRSQSPDS 52

Query: 61  PNRMQASTVVPKENGLISTSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQ 120
           P ++             ST                       FCT+LYLSSS++SET + 
Sbjct: 53  PGQLWPKNSSQSTFSRSST-----------------------FCTNLYLSSSSTSETQKH 89

Query: 121 IGN-FPFLPHPRTFNQSVSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SD 178
           +GN  PFLP P ++  S S V+S +S  +F+ED+GN     +S SL+K FLN   DA SD
Sbjct: 90  LGNSLPFLPDPSSYTHSASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSD 149

Query: 179 GSFPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSC 238
           G F    C  +   L++ +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS 
Sbjct: 150 GDFHDFGCSNDSYCLSDQMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSP 208

Query: 239 KENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLK 298
            ++ V  A  VD +SSH SP SA   K RMRWTPELHE FV+AV KL+GPEKATPKAV K
Sbjct: 209 SQSCVPGAMSVDVVSSHPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKK 268

Query: 299 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTCSSEEKK-ATSSIESDGRKKGSIQFT 357
           LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK+T +SEEKK A S  E+D +KKG+IQ T
Sbjct: 269 LMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLT 328

Query: 358 EALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTIT 417
           EALRMQMEVQKQLHEQ EVQR LQLRIEEHA+YLEK++ EQ+K G       + S  T+ 
Sbjct: 329 EALRMQMEVQKQLHEQQEVQRVLQLRIEEHAKYLEKMLEEQRKTGRWI----SSSSQTVL 384

Query: 418 NGSKDSEQQPSSPSFTVSAILSPEQPAESKTESSSTSLLSKHKATDSRESKPDACLKRIR 477
           + S DS   P S + + +   SP+ P           L +++KA+++ + K ++  KR R
Sbjct: 385 SPSDDS--IPDSQNMSKTKASSPQPP-----------LPAENKASETEDDKCESPQKRRR 431

Query: 478 LENKPE 483
           LEN  E
Sbjct: 432 LENIAE 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.778	0.859	0.484	1.3e-94
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.663	0.744	0.348	1.8e-39
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.379	0.455	0.467	1.1e-37
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.352	0.427	0.505	3e-37
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.322	0.559	0.514	2.7e-36
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.423	0.528	0.422	8.3e-35
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.296	0.392	0.496	1.1e-32
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.272	0.453	0.452	1.4e-29
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.314	0.435	0.420	7.1e-29
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.272	0.400	0.450	9.1e-29

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
 Identities = 198/409 (48%), Positives = 244/409 (59%)

Query:    80 SDSPISPGSHF--QHSKGGFSRSSVFCTXXXXXXXXXXETHRQIGN-FPFLPHPRTFNQS 136
             S SP SPG  +    S+  FSRSS FCT          ET + +GN  PFLP P ++  S
Sbjct:    53 SQSPDSPGQLWPKNSSQSTFSRSSTFCTNLYLSSSSTSETQKHLGNSLPFLPDPSSYTHS 112

Query:   137 VSAVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLNFPEDA-SDGSFPGVTCMGERLGLNE 195
              S V+S +S  +F+ED+GN     +S SL+K FLN   DA SDG F    C  +   L++
Sbjct:   113 ASGVESARSPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSDGDFHDFGCSNDSYCLSD 172

Query:   196 HLELQFLSDELDIDITDHGENPRLDEIYDAPKSSLKPPMGLSCKENYVSSAPPVDXXXXX 255
              +ELQFLSDEL++ ITD  E PRLDEIY+ P +S  P   LS  ++ V  A  VD     
Sbjct:   173 QMELQFLSDELELAITDRAETPRLDEIYETPLAS-NPVTRLSPSQSCVPGAMSVDVVSSH 231

Query:   256 XXXXXXXXXKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQ 315
                      K RMRWTPELHE FV+AV KL+GPEKATPKAV KLMNVEGLTIYHVKSHLQ
Sbjct:   232 PSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQ 291

Query:   316 KYRLAKYMPXXXXXXXXXXXXXXXXXXX-IESDGRKKGSIQFTEALRMQMEVQKQLHEQL 374
             KYRLAKYMP                     E+D +KKG+IQ TEALRMQMEVQKQLHEQL
Sbjct:   292 KYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQL 351

Query:   375 EVQRALQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTV 434
             EVQR LQLRIEEHA+YLEK++ EQ+K G       + S  T+ + S DS   P S + + 
Sbjct:   352 EVQRVLQLRIEEHAKYLEKMLEEQRKTGRWI----SSSSQTVLSPSDDSI--PDSQNMSK 405

Query:   435 SAILSPEQPAXXXXXXXXXXXXXXHKATDSRESKPDACLKRIRLENKPE 483
             +   SP+ P               +KA+++ + K ++  KR RLEN  E
Sbjct:   406 TKASSPQPPLPAE-----------NKASETEDDKCESPQKRRRLENIAE 443

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 124/356 (34%), Positives = 173/356 (48%)

Query:    93 SKGG--FSRSSVFCTXXXXXXXXXXETHRQIGNFP----FLPHPRTFNQSVSAVDSTKSS 146
             S GG  FS SS FC           +    +   P     + H     Q       T S 
Sbjct:    58 SSGGNLFSSSSGFCNGVYVSSSS--QARPSVSTVPRDRITVAHVSGEGQRQECPVETHSL 115

Query:   147 LLFSEDMGNAYQEEHSESLMKGFLNFP-EDASDGSFPGVTCMGERLGLNEHLEL--QFLS 203
              L ++          S+ + +GF +FP  D    S   +    E L   E  +   Q +S
Sbjct:   116 QLINQPQEQKIMTWSSDQI-RGFFDFPVPDPQAASSRTMVSSKEVLSKCEWPDWADQLIS 174

Query:   204 DE-LDIDITDHGENPRLDEIY---DAPKSSLKPPMGLSCKENYVSSAPPVDXXXXXXXXX 259
             D+ L+ + ++   +P +  +Y   +   S +     +   ++ V   P ++         
Sbjct:   175 DDSLEPNWSELLGDPNVLNLYSKIETQSSDIARQEIVFRNQHQVD--PSMEPFNAKSPPA 232

Query:   260 XXXXXKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319
                  K RMRWTPELHE FVEA+N+L G E+ATPKAVLKL+N  GLT+YHVKSHLQKYR 
Sbjct:   233 SSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRT 292

Query:   320 AKYMPXXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRA 379
             A+Y P                   I+S   K  SI+ TEALR+QM+VQKQLHEQLE+QR+
Sbjct:   293 ARYKPELSKDTEEPLVKNLKTIEDIKSLDLKT-SIEITEALRLQMKVQKQLHEQLEIQRS 351

Query:   380 LQLRIEEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPSFTVS 435
             LQL+IEE  RYL+ ++ +QQK          ++    T+ S   E  PS+PS  +S
Sbjct:   352 LQLQIEEQGRYLQMMIEKQQK--------MQENKKDSTSSSSMPEADPSAPSPNLS 399

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 92/197 (46%), Positives = 116/197 (58%)

Query:   205 ELDIDITDHGENPRLDEIY-DAPKSSLKPPMGLSCKENYVSSAPPVDXXXXXXXXXXXXX 263
             EL  D + H  N  +   + D P+  +        ++  VSS    D             
Sbjct:   177 ELLGDSSSHNPNSEIPTPFLDVPRLDITANQ----QQQMVSSE---DQLSGRNSSSSVAT 229

Query:   264 XKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM 323
              K RMRWTPELHE FVEAVN+L G E+ATPKAVLKL+N  GLTIYHVKSHLQKYR A+Y 
Sbjct:   230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK 289

Query:   324 PXXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLR 383
             P                   I+S   K  S++ T+ALR+QMEVQK+LHEQLE+QR+LQL+
Sbjct:   290 PETSEVTGEPQEKKMTSIEDIKSLDMKT-SVEITQALRLQMEVQKRLHEQLEIQRSLQLQ 348

Query:   384 IEEHARYLEKIVAEQQK 400
             IE+  RYL+ +  +QQK
Sbjct:   349 IEKQGRYLQMMFEKQQK 365

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 92/182 (50%), Positives = 108/182 (59%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             K RMRWTPELHE FVEAVN L G E+ATPK VLK+M VEGLTIYHVKSHLQKYR A+Y P
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRI 384
                                   D   KG I  TEALR+QMEVQKQLHEQLE+QR LQLRI
Sbjct:   285 EPSETGSPERKLTPLEHIT-SLD--LKGGIGITEALRLQMEVQKQLHEQLEIQRNLQLRI 341

Query:   385 EEHARYLEKIVAEQQKD---GSATILPQAQSLSTITNGSKDSEQQPSSPSFTVSAILSPE 441
             EE  +YL+ +  +Q      G+A+    A         + DS++ P   +     + SP 
Sbjct:   342 EEQGKYLQMMFEKQNSGLTKGTASTSDSAAKSEQEDKKTADSKEVPEEETRKCEELESP- 400

Query:   442 QP 443
             QP
Sbjct:   401 QP 402

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 86/167 (51%), Positives = 106/167 (63%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             K R+RWT ELHE FV+AV +L GP++ATPK VL++M V+GLTIYHVKSHLQKYRLAKY+P
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 74

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRI 384
                                   DG     +Q TEAL++QMEVQK+LHEQLEVQR LQLRI
Sbjct:    75 DSSSEGKKTDKKESGDMLS-GLDG--SSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRI 131

Query:   385 EEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSKDSEQQPSSPS 431
             E   +YL+KI+ EQQ+       P A     +T  S  +   P+S S
Sbjct:   132 EAQGKYLKKIIEEQQRLSGVLGEPSAP----VTGDSDPATPAPTSES 174

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 92/218 (42%), Positives = 116/218 (53%)

Query:   215 ENPRLDEIYDAPKSSLKPPMGLSCKE-NYVSSAPPVDXXXXXXXXXXXXXXKPRMRWTPE 273
             + P +      P++ L+ P   SC E   +      +              K RMRWTPE
Sbjct:   182 QQPSMQSQIQQPQAVLQQPS--SCVELRPLDRTVSSNSNNNSNSNNAAAAAKGRMRWTPE 239

Query:   274 LHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPXXXXXXXXX 333
             LHE FV+AVN+L G  +ATPK VLK M VEGLTI+HVKSHLQKYR AKY+P         
Sbjct:   240 LHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAKYIPVPSEGSPEA 299

Query:   334 XXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEK 393
                       I SD  K+G I  TE LR+QME QK+LHEQLE  R +QLRIEE  + L  
Sbjct:   300 RLTPLEQ---ITSDDTKRG-IDITETLRIQMEHQKKLHEQLESLRTMQLRIEEQGKALLM 355

Query:   394 IVAEQQKDGSATILPQAQSLSTITNGSKDSEQ-QPSSP 430
             ++ +Q          +  S  T  NGS++SE  +P  P
Sbjct:   356 MIEKQNMGFGGPEQGEKTSAKTPENGSEESESPRPKRP 393

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             K R+RWT +LHE FVE VN+L G +KATPKA+LK M+ +GLTI+HVKSHLQKYR+AKYMP
Sbjct:   192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMP 251

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRI 384
                                 + D R    +Q  EAL++Q++VQ+ LHEQLE+QR LQLRI
Sbjct:   252 ESQEGKFEKRACAKELS---QLDTRT--GVQIKEALQLQLDVQRHLHEQLEIQRNLQLRI 306

Query:   385 EEHARYLEKIVAEQQKDGSATI--LPQAQ-SLSTI 416
             EE  + L+ ++ +QQK+  + +  LP A+ SLS +
Sbjct:   307 EEQGKQLKMMMEQQQKNKESLLKKLPDAEASLSLL 341

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 67/148 (45%), Positives = 89/148 (60%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             KPR+RWT ELHE FV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQK+RL +   
Sbjct:    41 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAG 100

Query:   325 XXXXXXXXXXX---------XXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLE 375
                                         +    + +G  Q TEALR QMEVQ++LH+QLE
Sbjct:   101 KESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEG-YQVTEALRAQMEVQRRLHDQLE 159

Query:   376 ---VQRALQLRIEEHARYLEKIVAEQQK 400
                VQR LQLRIE   +YL+ I+ +  K
Sbjct:   160 YGQVQRRLQLRIEAQGKYLQSILEKACK 187

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 66/157 (42%), Positives = 93/157 (59%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             KPR+RWT ELHE FV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL K  P
Sbjct:    34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRI 384
                                I+ +      +       MQMEVQ++LHEQLEVQR LQLRI
Sbjct:    93 HKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRI 152

Query:   385 EEHARYLEKIVAEQQKDGSATILPQAQSLSTITNGSK 421
             E   +Y++ I+    +  +   +  A + + +  G K
Sbjct:   153 EAQGKYMQSILERACQTLAGENMAAATAAAAVGGGYK 189

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 68/151 (45%), Positives = 93/151 (61%)

Query:   265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMP 324
             KPR++WT +LH  F+EAVN+L GP KATPK ++K+M + GLT+YH+KSHLQKYRL K M 
Sbjct:    34 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLGKSMK 93

Query:   325 XXXXXXXXXXXXXXXXXXXIESDGR---------------KKGSIQFTEALRMQMEVQKQ 369
                                 ++D R               K   +Q TEAL+MQMEVQK+
Sbjct:    94 FDDNKLEVSSASENQEVES-KNDSRDLRGCSVTEENSNPAKDRGLQITEALQMQMEVQKK 152

Query:   370 LHEQLEVQRALQLRIEEHARYLEKIVAEQQK 400
             LHEQ+EVQR LQ++IE   +YL+ ++ + Q+
Sbjct:   153 LHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQ 183

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.135.131.1 hypothetical protein (395 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-24
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	4e-20
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 95.5 bits (238), Expect = 2e-24
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
           KPR+ WT +LH+ F++AV KL GP+ ATPK +L+LM V+GLT   V SHLQKYRL +
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 83.1 bits (206), Expect = 4e-20
 Identities = 31/51 (60%), Positives = 41/51 (80%)

Query: 353 SIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGS 403
            +Q TEALR+QMEVQ++LHEQLEVQR LQ+RIE   +YL++I+ + QK  S
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 249 VDALSSHTSPASATAHKP-----RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVE 303
           VD   +  SP S     P     ++ WTPELH  FV AV +L G EKA P  +L+LM V+
Sbjct: 214 VDRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQL-GVEKAFPSRILELMGVQ 272

Query: 304 GLTIYHVKSHLQKYR 318
            LT +++ SHLQKYR
Sbjct: 273 CLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318
           R  WTPE  E  +EAV K           + K +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
PLN03162	526	golden-2 like transcription factor; Provisional	99.91
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.83
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.12
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	87.7

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.91  E-value=4.8e-25  Score=224.53  Aligned_cols=70  Identities=43%  Similarity=0.655  Sum_probs=62.9

Q ss_pred             CcCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhccCCcchhhh
Q 010978          260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK  330 (496)
Q Consensus       260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~p~~~~~k  330 (496)
                      ....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...++..
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaE  299 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAE  299 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhh
Confidence            344789999999999999999999996 7999999999999999999999999999999998865555443

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.90  E-value=4.4e-24  Score=165.17  Aligned_cols=50  Identities=64%  Similarity=0.879  Sum_probs=48.1

Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Q 010978          353 SIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDG  402 (496)
Q Consensus       353 ~~qitEALr~QmEVQkrLHEQLEVQR~LQLRIEaqGKYLqsiLek~qk~~  402 (496)
                      +++|+||||+||||||||||||||||+||+|||||||||++|||+++++.
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~   50 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL   50 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999875

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.83  E-value=5.3e-21  Score=150.00  Aligned_cols=56  Identities=61%  Similarity=0.976  Sum_probs=54.3

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhh
Q 010978          265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA  320 (496)
Q Consensus       265 KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~  320 (496)
                      |+|++||+|+|++||+||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.12  E-value=0.0011  Score=49.24  Aligned_cols=48  Identities=33%  Similarity=0.347  Sum_probs=41.4

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhh
Q 010978          267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR  318 (496)
Q Consensus       267 RlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYR  318 (496)
                      |..||+|=+++|++||.++|.-   .-+.|-+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5789999999999999999632   6889999998 7999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=87.70  E-value=1.1  Score=35.81  Aligned_cols=38  Identities=32%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCcc
Q 010978          368 KQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATI  406 (496)
Q Consensus       368 krLHEQLEVQR~LQLRIEaqGKYLqsiLek~qk~~~~~~  406 (496)
                      .-|..|+||||.|.=.+|.| |-||.-+|.+.+-...++
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~~il   43 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQSIL   43 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence            56889999999999999988 678877765555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		5e-10

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320
           KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 98.8 bits (246), Expect = 1e-25
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
              KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 9e-09
 Identities = 63/443 (14%), Positives = 136/443 (30%), Gaps = 111/443 (25%)

Query: 21  SCCSALSPIHNFQTECQSLSTG--EYPFPHPSPFIRKESLSS-PNRMQASTVVPKENGLI 77
           +C S  + +   Q     +            +  +R  S+ +   R+  S   P EN L+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLL 248

Query: 78  STSDSPISPGSHFQHSKGGFSRSSVFCTSLYLSSSASSETHRQIGNFPFLPHPRTFNQSV 137
              +  +     +      F+   + C  L                        T  + V
Sbjct: 249 VLLN--VQNAKAWNA----FN---LSCKILLT----------------------TRFKQV 277

Query: 138 S-AVDSTKSSLLFSEDMGNAYQEEHSESLMKGFLN-----FPEDASDGSFPGVTCM-GER 190
           +  + +  ++ +  +        +  +SL+  +L+      P +    + P    +  E 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAES 336

Query: 191 L--GLN-----EHLELQFLSDELDIDITDHGENPRLDEIYDA----PKSSLKPPMGLS-- 237
           +  GL      +H+    L+  ++  + +  E     +++D     P S+  P + LS  
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 238 -CKENYVSSAPPVDALSS------HTSPASATAH------KPRMRWTPELHECFVEAVNK 284
                       V+ L            ++ +        K ++     LH   V+  N 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 285 LDG--PEKATPKAVLKLMNVEGLTIY-HVKSHLQKYRLAKYMPEKKE--------EKKTC 333
                 +   P        ++    Y H+  HL+     + M   +         E+K  
Sbjct: 456 PKTFDSDDLIPP------YLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 334 -SSEEKKATSSIES---DGRK-KGSIQ-----FTEALRMQMEVQKQLHEQLE-------V 376
             S    A+ SI +     +  K  I      +   +   ++   ++ E L        +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 377 QRALQLRIEEHARYLEKIVAEQQ 399
           + AL    E+ A + E   A +Q
Sbjct: 569 RIALMA--EDEAIFEE---AHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 43/344 (12%), Positives = 100/344 (29%), Gaps = 109/344 (31%)

Query: 195 EHLELQFLSDELDI-DITDHGE----NPRLDEIYDAP-----------------KSSLKP 232
              E  F+ +  D  D+ D  +       +D I  +                  +  ++ 
Sbjct: 23  SVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 233 PMGLSCKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPEL-HECFVEAVNKL-DGPEK 290
            +    + NY         L       S    + R    P +    ++E  ++L +  + 
Sbjct: 82  FVEEVLRINY-------KFL------MSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQV 125

Query: 291 ATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKY-----MPEKKEEK---KT------CSSE 336
                V +L     L     +  L + R AK      +          KT      C S 
Sbjct: 126 FAKYNVSRLQPYLKL-----RQALLELRPAKNVLIDGV------LGSGKTWVALDVCLSY 174

Query: 337 EKKATS-------SIESDGRKKGSIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHAR 389
           + +          ++++    +  ++  + L  Q++       + +    ++LRI     
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQA 232

Query: 390 YLEKIVAEQQKDGSATIL-------------PQAQSLSTITNGSKDSEQQPSSPSFTVSA 436
            L +++  +  +    +L                + L T    ++  +         V+ 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQ---------VTD 279

Query: 437 ILSP--------EQPAESKTESSSTSLLSKHKATDSRESKPDAC 472
            LS         +  + + T     SLL K+     ++   +  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	90.42
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	88.66
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	84.96

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=3e-28  Score=194.37  Aligned_cols=61  Identities=51%  Similarity=0.758  Sum_probs=57.7

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhccC
Q 010978          262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM  323 (496)
Q Consensus       262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~  323 (496)
                      +.+|+||+||+|||++||+||++|| .++||||+||++|||+|||++||||||||||+..++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            5789999999999999999999996 799999999999999999999999999999997653

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=90.42  E-value=0.68  Score=37.61  Aligned_cols=49  Identities=14%  Similarity=0.124  Sum_probs=40.0

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhh
Q 010978          264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR  318 (496)
Q Consensus       264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYR  318 (496)
                      ...+-.||+|=+++|++||..+|+    .=+.|-+.|+  +=|..+++.|-++|-
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP   63 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence            344678999999999999999974    3467777764  799999999998873

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=88.66  E-value=1.2  Score=34.81  Aligned_cols=52  Identities=27%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhc
Q 010978          264 HKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK  321 (496)
Q Consensus       264 ~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k  321 (496)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.|  +|=|-.+|+.|.++|-..+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            445668999999999999999963    345666654  7899999999999985543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.96  E-value=1.8  Score=33.89  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCchH---HHHhhcCCCCccHHHHHHHhhhhhhh
Q 010978          265 KPRMRWTPELHECFVEAVNKLDGPEKATPK---AVLKLMNVEGLTIYHVKSHLQKYRLA  320 (496)
Q Consensus       265 KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK---~IL~lM~V~gLT~~hVKSHLQKYRl~  320 (496)
                      ..+-.||+|=+++|+++|..+| .+...|.   .|-+.|  +|=|..+|+.|-++|-..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            3455899999999999999996 3332233   444454  789999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	7e-24
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.004

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 92.3 bits (229), Expect = 7e-24
 Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAK 321
           KPR+ WT ELH  F+ AV+ L G E+A PK +L LMNV+ LT  +V SHLQK+R+A 
Sbjct: 5   KPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 238 CKENYVSSAPPVDALSSHTSPASATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVL 297
           CK+N  +S+     L            K  +   P  +  FV+ +  L       P+  +
Sbjct: 113 CKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGI 172

Query: 298 KLMNVEGLTIYHVKSH----LQKYRLAKYMPEKKEEKKTCSSEEKKATSSIESDGRKKGS 353
           +   +    +   +S     LQ  +      ++ E ++  +   + +   +    RK   
Sbjct: 173 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 232

Query: 354 IQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQK 400
               +  R   E  KQL E++E  R   L  +E  R L   + EQ++
Sbjct: 233 -MMEQKERSYQEHLKQLTEKMENDRVQLL--KEQERTLALKLQEQEQ 276

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	88.23
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	83.67

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=7.2e-26  Score=178.60  Aligned_cols=61  Identities=51%  Similarity=0.750  Sum_probs=57.2

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhhccC
Q 010978          262 TAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYM  323 (496)
Q Consensus       262 ~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~  323 (496)
                      +.+|+|++||+|||++||+||++||| ++||||.|+++|+|+|||++||+|||||||+....
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999965 89999999999999999999999999999997653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.23  E-value=0.46  Score=34.57  Aligned_cols=48  Identities=27%  Similarity=0.382  Sum_probs=39.1

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhhhhh
Q 010978          267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA  320 (496)
Q Consensus       267 RlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~  320 (496)
                      .++||+|=++.|++||..+|.    .=..|-++|  +|=|..+|++|.++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999974    344566665  588999999999988654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=1.1  Score=31.14  Aligned_cols=44  Identities=25%  Similarity=0.251  Sum_probs=35.2

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHhhhh
Q 010978          269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY  317 (496)
Q Consensus       269 rWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~gLT~~hVKSHLQKY  317 (496)
                      .||.+=+.+|++||.+.| ..  -=+.|-+.|+  |=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999996 11  2456666665  67999999999887