Citrus Sinensis ID: 011146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELSQMVSPMNMFGSLSQMQWFSGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGNPHHRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHccccccccccccEEEEEcHHHHHHcccEEEHHccccccHHHHHHHHccccccccEEEcccccccEEEEEEccccccccccHHHHHHcHHHHHHHHcccccccEEEcccccccEEEEccHHHHHcccccccEEcccccEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHcHHHHccccccccc
Coil and Loop (DISEMBL)
mmsqdhglsvpstlkgfvqepnsnpnpnpssnqlkrkrnlpgtpdpdaevialspkslMATNRFLCEICNkgfqrdqnlqlhrrghnlpwklkqrtnKEVRkkvyicpekscvhhdpsralgdltgikkhfsrkhgekkwkcekcskkyavQSDWKAhskicgtreyrcdcgtlfsrkdsfiTHRAFCDALAEESARFttisstnpqaaaaipqfSSVFRQqqqsapgselagnnviadgqkprlplwldqannsnamltpigssstglpelsqmvspmnmfgslsqmqwfsgganlsmssssslprgipkeeeenkaynlsesmtslypsnqsgqQQQQQQQQQQQGLAHMSATALLQKAAQMgstrsnannstgfglmstsfnsfnqtdkNELHkffkqpnqqvadnDQNLNELIMNsfscptnmgavagssNASLLMANAKNASNEAERRLTRDFLgvgvessrplSQQELAKFMNlssqyggnphhrs
Flexible Loop (DISEMBL)
mmsqdhglSVPSTLKgfvqepnsnpnpnpssnqlKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQnlqlhrrghnlpwklkqrtnkeVRKKVYIcpekscvhhdpsralgdltGIKKhfsrkhgekkwkcekcskkyavqsdwkahskicgtreyRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELSQMVSPMNMFGSLSQMQWFSGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFmnlssqyggnphhrs
Low Complexity Region (SEG)
MMSQDHGLSVPSTLKGFVQEpnsnpnpnpssnQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGekkwkcekcskkYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPqfssvfrqqqqsAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELSQMVSPMNMFGSLSQMQWFSGGANLsmsssssLPRGIPKEEEENKAYNLSESMTSLYPSNQSGqqqqqqqqqqqqGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGNPHHRS
Disordered region (IsUnstruct)
*******************************************************KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFT*************************************************************************************************************************************************************************************************************************I***************************************************************************
Disordered Region (DISOPRED)
MMSQDHGLSVPSTLKGFVQ***************KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQF***************************P**********************************************************************************************************************************************************************************************************************FLGVGVESS**************************
Disordered Region (DISEMBL)
*********VPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKK*************EKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSV************LAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELSQMVSPMNMFGSLSQMQWFSGGAN*******************NKAYNLSESMTSL***********************MSATALLQ**********NANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSS**********
Disordered Region (DISPRO)
****************************************PGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESAR**********************************************************************************NMFGSLSQMQWFSGG*******************************************************************AQMGS**************************************************************************************RLTRDFLGVGVESSRPLSQQELAKFMNLSSQ*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELSQMVSPMNMFGSLSQMQWFSGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGNPHHRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q700D2	503	Zinc finger protein JACKD	yes	no	0.873	0.854	0.487	1e-101
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.855	0.832	0.466	5e-96
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.833	0.879	0.470	3e-94
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.292	0.288	0.354	6e-22
Q943I6	522	Zinc finger protein STOP1	no	no	0.329	0.310	0.329	2e-21
Q2QX40	465	Zinc finger protein STAR3	no	no	0.280	0.296	0.333	1e-19
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.317	0.514	0.323	2e-15
O43313	823	ATM interactor OS=Homo sa	yes	no	0.282	0.168	0.314	3e-13
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.235	0.141	0.315	5e-12
Q61116	645	Zinc finger protein 235 O	no	no	0.233	0.178	0.294	8e-08

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/474 (48%), Positives = 285/474 (60%), Gaps = 44/474 (9%)

Query: 31  SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPW 90
           S+  K+KRN PGTPDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 49  SSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 108

Query: 91  KLKQRTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKY 149
           KLKQR+ +EV +KKVYICP K+CVHHD SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKY
Sbjct: 109 KLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKY 168

Query: 150 AVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAA 209
           AVQSDWKAH+K CGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR +++S+ NP  +
Sbjct: 169 AVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVIS 228

Query: 210 AAIPQFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQAN----NSNAMLTPIG-- 263
                F            G+E   +NV+ +   P LP           + NA ++  G  
Sbjct: 229 TTNLNF------------GNE---SNVMNN---PNLPHGFVHRGVHHPDINAAISQFGLG 270

Query: 264 -------SSSTGLPELSQMVSPMN---MFGSLSQMQWFSGGANLSMSSSSSLPRGIPKEE 313
                    + GL E+ QM S  N      S S +  FSG     +  +S+ P       
Sbjct: 271 FGHDLSAMHAQGLSEMVQMASTGNHHLFPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSS 330

Query: 314 EENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANN 373
             ++  + S    +L  S+ S       + +Q + L+ MSATALLQKAAQMGSTRSN++ 
Sbjct: 331 STSQQTSASLQHQTLKDSSFSPLFSSSSENKQNKPLSPMSATALLQKAAQMGSTRSNSST 390

Query: 374 STGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGS 433
           +  F    T  +S                 QQ+  N+ N N L  N    P  +  V+ S
Sbjct: 391 APSFFAGPTMTSSSATASPPPRSSSPMMIQQQL--NNFNTNVLRENHNRAPPPLSGVSTS 448

Query: 434 SNASLLMANAKNASNEAERR-LTRDFLGVGVE------SSRPLSQQELAKFMNL 480
           S  +    + ++  N A++  LTRDFLGV  E        RP   QELA+F  L
Sbjct: 449 SVDNNPFQSNRSGLNPAQQMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFAPL 502

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  352 bits (902), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 218/467 (46%), Positives = 272/467 (58%), Gaps = 46/467 (9%)

Query: 34  LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
           +K+KRNLPG PDP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 40  VKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLK 99

Query: 94  QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 153
           QRT+KEVRK+VY+CPEKSCVHH P+RALGDLTGIKKHF RKHGEKKWKCEKC+K+YAVQS
Sbjct: 100 QRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQS 159

Query: 154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIP 213
           DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+AR    S     AA A  
Sbjct: 160 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATAGS 219

Query: 214 QFS------SVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAM--LTPIGSS 265
             +      ++        P S   G          + P+  +  ++ + M   + +   
Sbjct: 220 NLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTLSLW 279

Query: 266 STGLPELSQMVSPMNMFG-----SLSQMQWFSGGAN----LSMSSSSSLPRG-----IPK 311
           S G     Q V+  +              W  G AN    L  +S S +        +  
Sbjct: 280 SGGNINHHQQVTIEDRMAPQPHSPQEDYNWVFGNANNHGELITTSDSLITHDNNINIVQS 339

Query: 312 EEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNA 371
           +E  N A +L  S+ SL+    S  Q  Q        +A+MSATALLQKAAQMG+T S +
Sbjct: 340 KENANGATSL--SVPSLF---SSVDQITQDANAASVAVANMSATALLQKAAQMGATSSTS 394

Query: 372 NNSTGFGLMSTSFNSF----NQ-TDKNELHKFF----KQPNQQVADNDQNLNEL--IMNS 420
             +T     S    SF    NQ  +     +FF        + +++N+  L+E+    N 
Sbjct: 395 PTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNSVELMSNNNNGLHEIGNPRNG 454

Query: 421 FSCPTNMGAVAGS--SNASLLMANAKNASNEAERRLTRDFLGVGVES 465
            +  + MG +         + + NA           TRDFLGVGV++
Sbjct: 455 VTVVSGMGELQNYPWKRRRVDIGNAGGGGQ------TRDFLGVGVQT 495

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  346 bits (887), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/442 (47%), Positives = 262/442 (59%), Gaps = 32/442 (7%)

Query: 34  LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
           +K+KRNLPG PDP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 36  VKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLK 95

Query: 94  QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 153
           QRT+KEVRK+VY+CPEK+CVHH  SRALGDLTGIKKHF RKHGEKKW CEKC+K+YAVQS
Sbjct: 96  QRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQS 155

Query: 154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIP 213
           DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+A+   +S  N  AAA  P
Sbjct: 156 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAP 215

Query: 214 QFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELS 273
              ++  Q         L G  +     +P +P      N+ +    P  SSS  L  + 
Sbjct: 216 GSVNLNYQY--------LMGTFIPP--LQPFVPQPQTNPNHHHQHFQPPTSSSLSL-WMG 264

Query: 274 QMVSPMNMFGSLSQMQWFSG---GANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYP 330
           Q ++P           W  G    A+  + ++++    I +    +     + S  SL+ 
Sbjct: 265 QDIAPPQ---PQPDYDWVFGNAKAASACIDNNNTHDEQITQNANASLTTTTTLSAPSLFS 321

Query: 331 SNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMG---STRSNANNSTGFGLMSTSFNSF 387
           S+Q        Q        +MSATALLQKAA++G   +T +  N+ + F L S    S 
Sbjct: 322 SDQP-------QNANANSNVNMSATALLQKAAEIGATSTTTAATNDPSTF-LQSFPLKST 373

Query: 388 NQT---DKNE-LHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANA 443
           +QT   D  E     F   N     +  + ++ I N+ +  T   A+    N        
Sbjct: 374 DQTTSYDSGEKFFALFGSNNNIGLMSRSHDHQEIENARNDVTVASALDELQNYPWKRRRV 433

Query: 444 KNASNEAERRLTRDFLGVGVES 465
                      TRDFLGVGV++
Sbjct: 434 DGGGEVGGGGQTRDFLGVGVQT 455

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 44  PDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK---QRTNKE- 99
           P    E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K      + NKE 
Sbjct: 224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKES 283

Query: 100 ------VRKKVYICPEKSC---VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKY 149
                 +  K Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK+
Sbjct: 284 VPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKF 343

Query: 150 AVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAF 187
           +V +D K H K CG  ++ C CGT FSRKD    H A 
Sbjct: 344 SVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 50  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKV----- 104
           V+ L  + ++A +   C IC KGF+RD NL++H RGH   +K      K  +        
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 105 ---YICPEKSCV---HHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSDWKA 157
              Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 158 HSKICGTREYRCDCGTLFSRKDSFITHRAF----CDALAEESARFTTISSTNPQAAAAI 212
           H K CG  ++ C CGT FSRKD    H A       AL  +  + T  +S  PQ + A+
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKVTG-ASEQPQGSEAM 445

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 50  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK-----------LKQRTNK 98
           V+ L    ++A +   C IC KGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 99  EVRKKVYICPEKSCVH---HDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 154
              ++ Y CP   C     H   + L  +  +K H+ R H EK+  C +C +K+++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAF 187
            K H K CG   + C CGT FSRKD    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 17/173 (9%)

Query: 48  AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKK---- 103
           A  I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + +    
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 104 --VYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 159
              Y C E  ++ + H  S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 160 KICGTREYRCDCGTLFSRKDSFITH-RAFCD-------ALAEESARFTTISST 204
           K CG R + C CG+ F  K S   H +AF          L EE A  +++S T
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAFGSGHGPYPTGLFEEQASNSSVSET 300

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 41  PGTPDPDA-EVI--ALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQ 94
           P  P P A E+I  ++S  S       LC +  C K       L +H  + H L   +  
Sbjct: 58  PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGI-- 115

Query: 95  RTNKEVRK------KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKK 148
             N  +RK      K Y CP + C    P R     + +K+HF + H EKK KC KCS  
Sbjct: 116 -VNPTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNS 173

Query: 149 YAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITH 184
           Y  + D K H++ CG + +RC CG  ++ + +  +H
Sbjct: 174 YGTEWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 64  FLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKEVRK------KVYICPEKSCVH 114
            LC +  C K       L +H  + H L   +    N  +RK      K Y CP K C  
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGI---VNPTIRKDLTTAPKFYCCPIKGC-P 135

Query: 115 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTL 174
             P R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  
Sbjct: 136 RGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCP 194

Query: 175 FSRKDSFITH 184
           ++ + +  +H
Sbjct: 195 YASRTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus GN=Znf235 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 24/139 (17%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHN-------------LPWKLKQRTNKEVR--KKVYICP 108
           F C +C K F R  +   H+R H               PW L   +++ V   KK Y C 
Sbjct: 453 FHCSVCGKNFSRSSHFLDHQRIHTGEKPYRCEVCGKRFPWSLSLHSHQSVHTGKKPYKCG 512

Query: 109 EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY 167
           E         +     + ++ H S   GEK +KC  C K+++  S+ +AH ++  G + Y
Sbjct: 513 E-------CGKGFSHASSLQAHHSVHTGEKPFKCNVCQKQFSKTSNLQAHQRVHTGEKPY 565

Query: 168 RCD-CGTLFSRKDSFITHR 185
           +CD CG  FS+K S   H+
Sbjct: 566 KCDTCGKAFSQKSSLQVHQ 584

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
359478335	527	PREDICTED: uncharacterized protein LOC10	0.936	0.874	0.597	1e-156
297746237	477	unnamed protein product [Vitis vinifera]	0.910	0.939	0.607	1e-149
255583691	543	nucleic acid binding protein, putative [	0.951	0.861	0.568	1e-139
255557032	525	nucleic acid binding protein, putative [	0.928	0.870	0.510	1e-130
297741581	469	unnamed protein product [Vitis vinifera]	0.876	0.918	0.534	1e-127
359481520	490	PREDICTED: zinc finger protein NUTCRACKE	0.898	0.902	0.523	1e-127
302398705	478	C2H2L domain class transcription factor	0.849	0.874	0.528	1e-117
147783024	474	hypothetical protein VITISV_009698 [Viti	0.843	0.875	0.506	1e-116
356544615	540	PREDICTED: uncharacterized protein LOC10	0.857	0.781	0.498	1e-115
356503710	512	PREDICTED: zinc finger protein JACKDAW-l	0.876	0.841	0.508	1e-114

>gi|359478335|ref|XP_002282251.2| PREDICTED: uncharacterized protein LOC100248459 [Vitis vinifera]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 330/552 (59%), Positives = 394/552 (71%), Gaps = 91/552 (16%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMA 60
           MM++D GL++PS+++GFVQEPNSNPNPNPS+N +K+KRNLPGTPDP+AEVIALSPKSLMA
Sbjct: 1   MMAED-GLTLPSSIRGFVQEPNSNPNPNPSANPVKKKRNLPGTPDPEAEVIALSPKSLMA 59

Query: 61  TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRA 120
           TNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QRT+KEVRKKVYICPEKSCVHH+P+RA
Sbjct: 60  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYICPEKSCVHHNPTRA 119

Query: 121 LGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDS 180
           LGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY+CDCGTLFSRKDS
Sbjct: 120 LGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDS 179

Query: 181 FITHRAFCDALAEESARFTTISSTNP-------------QAAAAIPQFSSVFRQQQQSAP 227
           FITHRAFCDALAEESAR T++S+ NP               A  IPQFSSVFR +     
Sbjct: 180 FITHRAFCDALAEESARLTSVSAPNPIFRNELMNGSISNPQAHIIPQFSSVFRPE---FV 236

Query: 228 GSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGS---------SSTGLPELSQMVSP 278
           GSE    ++ ADGQKPRLPLWLD AN+   +  PIG          +S GLPE+ Q  +P
Sbjct: 237 GSEQLVGHLNADGQKPRLPLWLDHANSH--LNNPIGVNTNGSFLAPTSAGLPEMVQ-TAP 293

Query: 279 MNMFGS--LSQMQWFSGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQ 336
           M+M+GS   SQ QW    +  S  +SS+LPR + KEEEENK  NLSES+TSL+ SNQ+  
Sbjct: 294 MSMYGSPASSQNQWLQRCSEASF-TSSTLPR-VLKEEEENKG-NLSESITSLFSSNQN-- 348

Query: 337 QQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNAN--NSTGFGLM------STSFNSF- 387
                   QQ+  AHMSATALLQKAAQMGST+SN+   ++TGFG +      +T F+S+ 
Sbjct: 349 --------QQESSAHMSATALLQKAAQMGSTKSNSAFFSTTGFGSINSSLSNTTPFSSYP 400

Query: 388 NQTDKNELHKFF-KQPNQQVADNDQNLNELIMNSFSCPTNM--GAVAGSSNASLLMANAK 444
           +    N++HKF  +Q NQ       ++N+LI NS S  + M  G + G  N++ L+  AK
Sbjct: 401 HGRSNNQVHKFLIRQSNQ-----SDSMNQLI-NSTSPSSTMGDGLLMGDMNSTPLVDTAK 454

Query: 445 N------------------------ASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNL 480
           N                        +SNE ER LTRDFLGVG ++SRP  QQELAKF ++
Sbjct: 455 NNMDHFLMVPSNPKQAQQIAGKFHASSNEVERGLTRDFLGVGSDASRPFLQQELAKFASM 514

Query: 481 S-----SQYGGN 487
                 SQY GN
Sbjct: 515 GSAMGMSQYSGN 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746237|emb|CBI16293.3| unnamed protein product [Vitis vinifera]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 312/514 (60%), Positives = 377/514 (73%), Gaps = 66/514 (12%)

Query: 2   MSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMAT 61
           M++D GL++PS+++GFVQEPNSNPNPNPS+N +K+KRNLPGTPDP+AEVIALSPKSLMAT
Sbjct: 1   MAED-GLTLPSSIRGFVQEPNSNPNPNPSANPVKKKRNLPGTPDPEAEVIALSPKSLMAT 59

Query: 62  NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL 121
           NRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QRT+KEVRKKVYICPEKSCVHH+P+RAL
Sbjct: 60  NRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYICPEKSCVHHNPTRAL 119

Query: 122 GDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSF 181
           GDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY+CDCGTLFSRKDSF
Sbjct: 120 GDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSF 179

Query: 182 ITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVIADGQ 241
           ITHRAFCDALAEESAR T++S+ NP           +FR +  +   S     ++I    
Sbjct: 180 ITHRAFCDALAEESARLTSVSAPNP-----------IFRNELMNGSISNPQA-HIIPQFS 227

Query: 242 KPRLPLWLDQANNSNAMLTPIGS---------SSTGLPELSQMVSPMNMFGS--LSQMQW 290
            PRLPLWLD AN+   +  PIG          +S GLPE+ Q  +PM+M+GS   SQ QW
Sbjct: 228 SPRLPLWLDHANSH--LNNPIGVNTNGSFLAPTSAGLPEMVQ-TAPMSMYGSPASSQNQW 284

Query: 291 FSGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLA 350
               +  S  +SS+LPR + KEEEENK  NLSES+TSL+ SNQ+          QQ+  A
Sbjct: 285 LQRCSEASF-TSSTLPR-VLKEEEENKG-NLSESITSLFSSNQN----------QQESSA 331

Query: 351 HMSATALLQKAAQMGSTRSNAN--NSTGFGLM------STSFNSF-NQTDKNELHKFF-K 400
           HMSATALLQKAAQMGST+SN+   ++TGFG +      +T F+S+ +    N++HKF  +
Sbjct: 332 HMSATALLQKAAQMGSTKSNSAFFSTTGFGSINSSLSNTTPFSSYPHGRSNNQVHKFLIR 391

Query: 401 QPNQQVADNDQNLNELIMNSFSCPTNM--GAVAGSSNASLLMANAKNASNEAERRLTRDF 458
           Q NQ       ++N+LI NS S  + M  G + G  N++ L      +SNE ER LTRDF
Sbjct: 392 QSNQ-----SDSMNQLI-NSTSPSSTMGDGLLMGDMNSTPLF---HASSNEVERGLTRDF 442

Query: 459 LGVGVESSRPLSQQELAKFMNLS-----SQYGGN 487
           LGVG ++SRP  QQELAKF ++      SQY GN
Sbjct: 443 LGVGSDASRPFLQQELAKFASMGSAMGMSQYSGN 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583691|ref|XP_002532599.1| nucleic acid binding protein, putative [Ricinus communis] gi|223527655|gb|EEF29765.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 312/549 (56%), Positives = 358/549 (65%), Gaps = 81/549 (14%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQ-LKRKRNLPGTPDPDAEVIALSPKSLM 59
           MM +D G S+PST+ GFVQEP +NPNPNP+SN  +K+KRNLPGTPDPDAEV+ALSPKSLM
Sbjct: 1   MMPED-GFSIPSTIIGFVQEPTTNPNPNPTSNPVMKKKRNLPGTPDPDAEVVALSPKSLM 59

Query: 60  ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSR 119
           ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR+ KEV+KKVYICPEKSCVHHDPSR
Sbjct: 60  ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTKEVKKKVYICPEKSCVHHDPSR 119

Query: 120 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKD 179
           ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKD
Sbjct: 120 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKD 179

Query: 180 SFITHRAFCDALAEESARFTTISSTN--------------------PQAAAAIPQFSSVF 219
           SFITHRAFCDALAEES RFT +S+                            I QFSSVF
Sbjct: 180 SFITHRAFCDALAEESGRFTPVSAAINANLRNDLINGANSINLPPPHHQTTVISQFSSVF 239

Query: 220 RQQQQSAPGSELAG-NNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTG---LPELSQM 275
           R +  +   SEL G NN+  D QKPRLP+WLD   N+N  L PIG  S     LP     
Sbjct: 240 RPEFGTTTASELLGSNNLGVDVQKPRLPIWLD---NANPQLNPIGVGSNANSFLPHELVQ 296

Query: 276 VSPMNMFGS-LSQMQWFSGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQS 334
              +NMFGS  SQ+QW S         + SLPRG+ KEEE +K  +L+ES+TSLY SN  
Sbjct: 297 TQQINMFGSGSSQLQWLSKYQEGLF--TGSLPRGL-KEEEGSKG-DLTESITSLYSSNH- 351

Query: 335 GQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTR--SNANNSTGFGLMSTSFNSFNQTDK 392
              QQQ+        AHMSATALLQKAAQMGSTR  ++ +  +      ++FNS+NQ   
Sbjct: 352 -HHQQQRSSLSSSSSAHMSATALLQKAAQMGSTRSNNSISLMSSSLSNVSNFNSYNQRKN 410

Query: 393 N-ELHKFF--KQPNQQVADNDQNLNEL---IMNSFSCP----TNMGAVAGSSNASLLMAN 442
           N E  KF   +QP  Q     +NLNEL   I  S + P    T    + G SN+S ++ +
Sbjct: 411 NDETLKFLSSRQPINQA----ENLNELANSISPSGTTPAATFTKESTLLGDSNSSSVLTS 466

Query: 443 AKN-------------------------ASNE-AERRLTRDFLGVG---VESSRPLSQQE 473
            +N                         +S+E  E  LTRDFLGVG     S  P  Q E
Sbjct: 467 TRNNTTKHWNHLIMQQQANGDQQNHGFISSDEVVEGSLTRDFLGVGAAEAASRAPFLQHE 526

Query: 474 LAKFMNLSS 482
           L KF ++ S
Sbjct: 527 LVKFASIGS 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557032|ref|XP_002519549.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541412|gb|EEF42963.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 284/556 (51%), Positives = 345/556 (62%), Gaps = 99/556 (17%)

Query: 1   MMSQDH--GLSVPSTLKGFV----QEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALS 54
           MMS  H    S+PS+L GF     Q+  +       ++  K+KRNLPGTPDPDAEVIALS
Sbjct: 1   MMSGGHHDAFSIPSSLPGFAHLDQQQNANPNPKPNPNSAAKKKRNLPGTPDPDAEVIALS 60

Query: 55  PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVH 114
           PK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV+KKVYICPEK+CVH
Sbjct: 61  PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVKKKVYICPEKTCVH 120

Query: 115 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTL 174
           HD SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTL
Sbjct: 121 HDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTL 180

Query: 175 FSRKDSFITHRAFCDALAEESARFTTISSTN------------PQAA--------AAIPQ 214
           FSRKDSFITHRAFCDALAEESARF +    N            P  A        A+I Q
Sbjct: 181 FSRKDSFITHRAFCDALAEESARFNSAPPANLNFRNENSVVNLPHGAPGHGVQDIASISQ 240

Query: 215 FS-SVFRQQQQSAPGSELAGNNVIADGQKPR-LPLWLDQANN--------SNAMLTPIGS 264
           FS S FR           A   V +D QKP  L LWL+Q N+        +N       S
Sbjct: 241 FSTSTFRSDVN-------AMTCVSSDQQKPAGLSLWLNQVNSHMNPADTVANNSSLYASS 293

Query: 265 SSTGLPELSQMVSPMNMFGSLSQMQWFSGGANLSMSSSSSLPRGIPKEEEENKAYNLSES 324
           +STGLPE+ Q+ S  N++GS S   +     NL++   S LP G+ +EE  +K  N+++S
Sbjct: 294 NSTGLPEMVQIGSS-NLYGSSSATNF----GNLTL---SGLPHGLKEEEGGDKRTNMTDS 345

Query: 325 MTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSN----ANNSTGFGLM 380
           + SLY  N         Q +Q + +A MSATALLQKAAQMGSTRS+       S+ +GLM
Sbjct: 346 LPSLYSDN--------HQNKQSKPVAPMSATALLQKAAQMGSTRSSNQSFFGGSSNYGLM 397

Query: 381 -------STSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMG----- 428
                  +T+  +  + ++NELH+ F+  N+Q   N        + + SC   MG     
Sbjct: 398 SSSSSSSNTTNLNSLRQNRNELHQVFQNVNKQQESN--------LTASSCSMPMGDAIMI 449

Query: 429 -AVAGSSNASLLMANAKNA----------SNEAERRLTRDFLGVGVESSRPLSQQELAKF 477
            A +G     L+ ++ K +          S   E  LTRDFLG+  +S RP   QE+AKF
Sbjct: 450 AASSGLDQVVLMQSSGKQSDPVQLKLQPGSTSLESGLTRDFLGMSGQSGRPFLPQEIAKF 509

Query: 478 MNLS-----SQYGGNP 488
            ++S     SQ+ GNP
Sbjct: 510 ASMSAVMGLSQFTGNP 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741581|emb|CBI32713.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/513 (53%), Positives = 324/513 (63%), Gaps = 82/513 (15%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPN---PNPSSNQLKRKRNLPGTPDPDAEVIALSPKS 57
           MMS D   S+PS+++ F Q+P++NPN   P P     K+KRNLPGTPDPDAEVIALSPK+
Sbjct: 3   MMSGDM-FSIPSSIRTFAQDPDANPNNLKPPP-----KKKRNLPGTPDPDAEVIALSPKT 56

Query: 58  LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDP 117
           LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+NKEVRKKVYICPEK+CVHHDP
Sbjct: 57  LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDP 116

Query: 118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSR 177
           SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTLFSR
Sbjct: 117 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSR 176

Query: 178 KDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVI 237
           KDSFITHRAFCDALAEE AR T++++TN             FR             N  +
Sbjct: 177 KDSFITHRAFCDALAEERARITSVAATNLN-----------FRNDSM---------NETV 216

Query: 238 ADGQKPRLPLWLDQANNSNAMLT----PIGSSSTGLPELSQMV-------SPMNMFGSLS 286
            + Q   L  +  +     A ++      G   TGLPE+ Q+        S +  FGS +
Sbjct: 217 INPQPGLLNGFSGRGGPDAAGISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCN 276

Query: 287 QMQWF------SGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQ 340
           +  W       S GANLS+   +SLP  + KEEE NK  ++ E++TSLY  N S      
Sbjct: 277 ESPWLDKSSATSNGANLSL---ASLPHAL-KEEEGNKG-SMVETLTSLYSGNHS------ 325

Query: 341 QQQQQQQGLAHMSATALLQKAAQMGSTRSNAN-NSTGFGLM------STSFNSFNQTDKN 393
              QQ    A MSATALLQKAAQMGSTRSN +     FG+M      ST+ N+    ++N
Sbjct: 326 ---QQSSPAAPMSATALLQKAAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTH-NRN 381

Query: 394 ELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERR 453
           ELH+ F           Q+ N +   S S        +G     + +      SN  E  
Sbjct: 382 ELHQVF-------GTGKQHENLMATASLS-----EGTSGKQTEPVPL-KLHLGSNSVENS 428

Query: 454 LTRDFLGV-GVESSRPLSQQELAKFMNLSSQYG 485
           LTRDFLG+ G ES RP   QELAKF ++ S  G
Sbjct: 429 LTRDFLGMGGGESGRPFLPQELAKFASMGSAMG 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481520|ref|XP_002275477.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 275/525 (52%), Positives = 326/525 (62%), Gaps = 83/525 (15%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPN---PNPSSNQLKRKRNLPGTPDPDAEVIALSPKS 57
           MMS D   S+PS+++ F Q+P++NPN   P P     K+KRNLPGTPDPDAEVIALSPK+
Sbjct: 1   MMSGDM-FSIPSSIRTFAQDPDANPNNLKPPP-----KKKRNLPGTPDPDAEVIALSPKT 54

Query: 58  LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDP 117
           LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+NKEVRKKVYICPEK+CVHHDP
Sbjct: 55  LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDP 114

Query: 118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSR 177
           SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTLFSR
Sbjct: 115 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSR 174

Query: 178 KDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVI 237
           KDSFITHRAFCDALAEE AR T++++TN             FR             N  +
Sbjct: 175 KDSFITHRAFCDALAEERARITSVAATNLN-----------FRNDSM---------NETV 214

Query: 238 ADGQKPRLPLWLDQANNSNAMLT----PIGSSSTGLPELSQMV-------SPMNMFGSLS 286
            + Q   L  +  +     A ++      G   TGLPE+ Q+        S +  FGS +
Sbjct: 215 INPQPGLLNGFSGRGGPDAAGISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCN 274

Query: 287 QMQWF------SGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQ 340
           +  W       S GANLS+   +SLP  + KEEE NK  ++ E++TSLY  N S      
Sbjct: 275 ESPWLDKSSATSNGANLSL---ASLPHAL-KEEEGNKG-SMVETLTSLYSGNHS------ 323

Query: 341 QQQQQQQGLAHMSATALLQKAAQMGSTRSNAN-NSTGFGLM------STSFNSFNQTDKN 393
              QQ    A MSATALLQKAAQMGSTRSN +     FG+M      ST+ N+    ++N
Sbjct: 324 ---QQSSPAAPMSATALLQKAAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTH-NRN 379

Query: 394 ELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKN-------- 445
           ELH+ F    Q   +N      L     +        + S+N + +M             
Sbjct: 380 ELHQVFGTGKQH--ENLMATASLSEGVLAGSGLSSLTSTSNNLAQMMMQTSGKQTEPVPL 437

Query: 446 ----ASNEAERRLTRDFLGV-GVESSRPLSQQELAKFMNLSSQYG 485
                SN  E  LTRDFLG+ G ES RP   QELAKF ++ S  G
Sbjct: 438 KLHLGSNSVENSLTRDFLGMGGGESGRPFLPQELAKFASMGSAMG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398705|gb|ADL36647.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 282/534 (52%), Positives = 330/534 (61%), Gaps = 116/534 (21%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSN-QLKRKRNLPGTPDPDAEVIALSPKSLM 59
           MMS+D  L VPS + GF QEP+S+PNPNP++N QLKRKR+LPGTPDPDAEVIA+SPKSLM
Sbjct: 1   MMSEDARL-VPSIITGFSQEPDSSPNPNPNTNNQLKRKRSLPGTPDPDAEVIAMSPKSLM 59

Query: 60  ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV-RKKVYICPEKSCVHHDPS 118
           ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+  EV RKKVY+CPEK+CVHH+PS
Sbjct: 60  ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKTEVIRKKVYVCPEKTCVHHEPS 119

Query: 119 RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRK 178
           RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK+CGTREYRCDCGTLFSRK
Sbjct: 120 RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGTREYRCDCGTLFSRK 179

Query: 179 DSFITHRAFCDAL-AEESARFTTISSTN-----------------PQAAAAIPQFSSVFR 220
           DSFITHRAFCDAL AE+SARF +  +TN                 PQ    IP F  +F 
Sbjct: 180 DSFITHRAFCDALAAEQSARFCSAPTTNNINPSFMNGSIANNTHKPQ---RIPHFIPMF- 235

Query: 221 QQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLTPIGSSSTGLPELSQMVSPMN 280
            Q + A    LA NN +                          SS+  +PE+ Q  S M+
Sbjct: 236 -QPEFAGSDHLAANNHL--------------------------SSNAFIPEMLQTAS-MD 267

Query: 281 MFG--SLSQMQWFS-----------GGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTS 327
           MFG  S SQMQW               AN    SS SL RG+ KE+EE+K  + SE++++
Sbjct: 268 MFGSSSSSQMQWLINNNKFVEESSFANANSLSMSSPSLLRGVLKEDEESKG-SFSETIST 326

Query: 328 LYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSF 387
              +N S       +Q        MSATALLQKAA+MGST SN NN       +T+FN  
Sbjct: 327 T--TNTSFYTNNNNKQNHHHHHQPMSATALLQKAARMGSTTSNNNNP------ATTFN-- 376

Query: 388 NQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVA--GS---SNASLLM-- 440
                               D   N N+++ NS S  +  GA    GS   SN  L+M  
Sbjct: 377 --------------------DTTLNFNDMV-NSTSSSSTQGATIEDGSLFLSNKHLMMPA 415

Query: 441 ---ANAKNASNEAERRLTRDFLGVGVESSR-----PLSQQELAKFMNLS--SQY 484
              A  K  ++E +  LTRDFLGVG   +      P  QQELAK  ++S  SQY
Sbjct: 416 GAAAMTKQGTSE-QSSLTRDFLGVGGGDAIFGGGVPFFQQELAKLASMSDLSQY 468

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783024|emb|CAN61309.1| hypothetical protein VITISV_009698 [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/509 (50%), Positives = 308/509 (60%), Gaps = 94/509 (18%)

Query: 25  PNPNPSSNQLKRKRNLPG--TPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH 82
           P P   + ++  + +L G    DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLH
Sbjct: 4   PQPLTHTPKIHTQTHLHGHSLTDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLH 63

Query: 83  RRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC 142
           RRGHNLPWKLKQR+NKEVRKKVYICPEK+CVHHDPSRALGDLTGIKKHFSRKHGEKKWKC
Sbjct: 64  RRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC 123

Query: 143 EKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTIS 202
           EKCSKKYAVQSDWKAHSK CGTREY+CDCGTLFSRKDSFITHRAFCDALAEE AR T+++
Sbjct: 124 EKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEERARITSVA 183

Query: 203 STNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLDQANNSNAMLT-- 260
           +TN             FR             N  + + Q   L  +  +     A ++  
Sbjct: 184 ATNLN-----------FRNDSM---------NETVINPQPGLLNGFSGRGGPDAAGISQF 223

Query: 261 --PIGSSSTGLPELSQMV-------SPMNMFGSLSQMQWF------SGGANLSMSSSSSL 305
               G   TGLPE+ Q+        S +  FGS ++  W       S GANLS+   +SL
Sbjct: 224 CPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCNESPWLDKSSATSNGANLSL---ASL 280

Query: 306 PRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMG 365
           P  + KEEE NK  ++ E++TSLY  N S         QQ    A MSATALLQKAAQMG
Sbjct: 281 PHAL-KEEEGNKG-SMVETLTSLYSGNHS---------QQSSPAAPMSATALLQKAAQMG 329

Query: 366 STRSNAN-NSTGFGLM------STSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIM 418
           STRSN +     FG+M      ST+ N+    ++NELH+ F           Q+ N +  
Sbjct: 330 STRSNPSFFGNSFGVMNSSGSHSTTLNTLTH-NRNELHQVF-------GTGKQHENLMAT 381

Query: 419 NSFSCPTNMGAVAG----------SSNASLLMANAKN-----------ASNEAERRLTRD 457
            S S     G +AG          ++ A ++M  +              SN  E  LTRD
Sbjct: 382 ASLS----EGVLAGSXLSSLTSTSNNLAQMMMQTSGKQTEPVPLKLHLGSNSVENSLTRD 437

Query: 458 FLGV-GVESSRPLSQQELAKFMNLSSQYG 485
           FLG+ G ES RP   QELAKF ++ S  G
Sbjct: 438 FLGMGGGESGRPFLPQELAKFASMGSAMG 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544615|ref|XP_003540744.1| PREDICTED: uncharacterized protein LOC100781896 [Glycine max]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 265/532 (49%), Positives = 312/532 (58%), Gaps = 110/532 (20%)

Query: 35  KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
           KR+R+LPGTPDPDAEV+ALSPKSLMATNRFLCE+CNKGFQRDQNLQLHRRGHNLPWKLK+
Sbjct: 38  KRRRSLPGTPDPDAEVVALSPKSLMATNRFLCEVCNKGFQRDQNLQLHRRGHNLPWKLKK 97

Query: 95  RTNKE-VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 153
           RTN + VRKKVY+CPEKSCVHHDPSRALGDLTGIKKH+SRKHGEKKWKC+KCSKKYAVQS
Sbjct: 98  RTNNDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQS 157

Query: 154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISS---------- 203
           DWKAHSKICGTREY+CDCGTLFSRKDSFITHRAFCDALAEESAR TTI +          
Sbjct: 158 DWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTTIPAALSNLRSDHH 217

Query: 204 ---TNPQAAAAIPQFSSVFRQQQQSAPGSELAGNNVIADGQKPRLPLWLD--QANNSNAM 258
              TN QA+  IPQ  S F    Q   GS  A        QK RLPLWLD  Q NN+  +
Sbjct: 218 HHLTNAQASR-IPQIFSGFHSSDQFGGGSSEALLANHHHQQKLRLPLWLDHHQVNNTQVL 276

Query: 259 LTPIGSSSTGLPELS--------QMVSPMNMFGSLSQM-------QWFSGG-ANLSMSSS 302
              + + ST     +         +V  M+MFG  +Q          F GG ANLS+   
Sbjct: 277 HHTLDNFSTEPSAFTSGTNSVPHDLVQTMDMFGPQTQFVNYRYPEASFGGGNANLSVLP- 335

Query: 303 SSLPRGIPKEEEENKAYNLSESMTS---LYPSNQSGQQQQQQQQQQQQGLAHMSATALLQ 359
              P G+ +E+EENK + LS S  S   LY SN                  +MSAT LLQ
Sbjct: 336 ---PHGLKQEQEENKQH-LSHSGASSNNLYLSNSIQNPPHHH---------YMSATTLLQ 382

Query: 360 KAAQMGSTRSNANNSTGFG-LMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIM 418
           KA QMGSTR + N    FG ++ T+  + N  +   L               Q LNEL+ 
Sbjct: 383 KAVQMGSTRISDN---VFGSIVGTTNRNNNNDNNTNLEV-------------QKLNELVS 426

Query: 419 NSFSCPT-------------NMGAVAGSSNA--------------SLLMANAKNASNEAE 451
               C               + G V G+                   ++ N+  ++N+ +
Sbjct: 427 MEAGCNNNLGGGGDGYLLYDSFGVVNGTDKGLEHMVMPVDEETQQESIVGNSLCSNNKNQ 486

Query: 452 RRLTRDFLGVGVESS------RPLSQQELAKF----------MNLSSQYGGN 487
             LTRDFLGVG  ++      RP  QQ+L +F          MNL SQYGG+
Sbjct: 487 LGLTRDFLGVGDNNNNLNPIRRPFFQQDLVEFNAMGSASASVMNLQSQYGGH 538

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503710|ref|XP_003520648.1| PREDICTED: zinc finger protein JACKDAW-like [Glycine max]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/492 (50%), Positives = 303/492 (61%), Gaps = 61/492 (12%)

Query: 35  KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
           K+KRNLPGTPDPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct: 36  KKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQ 95

Query: 95  RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSD 154
           R+NKEVRKKVYICPEK+CVHHD +RALGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSD
Sbjct: 96  RSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSD 155

Query: 155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISST---------- 204
           WKAH+K CGTREY+CDCG LFSRKDSFITHRAFCDALA+ES+R T+++ST          
Sbjct: 156 WKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALADESSRLTSVASTSLNFKSEDAT 215

Query: 205 --NPQAAAAIPQFSSVFRQQQQSAPGSE-LAGNNVIADGQKPRLPLWLDQANN--SNAML 259
             N QA+ +     +    Q  S  G       N+  D Q+P L LWL+Q N+  +N + 
Sbjct: 216 MINTQASLSTRGLITDHGMQNVSQFGPHGFRLMNMGTDQQRPNLSLWLNQGNHHINNPLD 275

Query: 260 TPIGSSSTGLPELSQM----VSPMNMFGSLSQMQWFSGGANLSMSSSSSLPRGIPKEEEE 315
             + SSS+GLPE+  M    ++   + GS S    F     +  SS+SS P  + K+ + 
Sbjct: 276 VALSSSSSGLPEVVHMAQANINNNALIGSSSVFSNFG----MPASSNSSNPNLMGKKGDG 331

Query: 316 NKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSN--ANN 373
                 +  + S+Y          + Q +     + MSATALLQKAAQMGSTRS   +  
Sbjct: 332 G-----ASDLASMY---------SESQNKNSNSTSPMSATALLQKAAQMGSTRSTNPSIF 377

Query: 374 STGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNS---FSCPTNMGAV 430
           S  FG+MS+S       + N  ++   Q NQ      QN N    +S       TN  ++
Sbjct: 378 SGSFGVMSSSSTQSTSLNSNIANQSCDQLNQAF----QNFNATSSSSATMLGSSTNFSSL 433

Query: 431 AGSSNA--SLLMANAKN---------ASNEAERRLTRDFLGV----GVESSRPLSQQELA 475
             SSN     +M N             SN  E  LTRDFLGV    G +       QELA
Sbjct: 434 THSSNGFDQFMMQNNVEPTQLKLHHPGSNSVEHNLTRDFLGVSGNGGGQVHHAFLPQELA 493

Query: 476 KFMNLSSQYGGN 487
           KF +L S  G N
Sbjct: 494 KFASLGSSMGLN 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.349	0.341	0.780	4.4e-90
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.341	0.336	0.815	6.7e-90
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.762	0.840	0.515	8.6e-88
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.349	0.285	0.761	1.2e-87
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.361	0.351	0.786	5.7e-86
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.331	0.360	0.815	4.1e-85
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.365	0.386	0.766	3.5e-84
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.347	0.425	0.779	1.5e-81
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.835	0.796	0.440	1.8e-80
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.333	0.360	0.8	4.1e-79

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 135/173 (78%), Positives = 150/173 (86%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRN PGTPDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query:    95 RTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             R+ +EV +KKVYICP K+CVHHD SRALGDLTGIKKH+SRKHG            YAVQS
Sbjct:   113 RSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQS 172

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNP 206
             DWKAH+K CGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR +++S+ NP
Sbjct:   173 DWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNP 225

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 6.7e-90, Sum P(4) = 6.7e-90
 Identities = 137/168 (81%), Positives = 147/168 (87%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRNLPG PDPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct:    32 KKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 91

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             R+ KEVRKKVY+CP   CVHHDPSRALGDLTGIKKHF RKHG            YAVQSD
Sbjct:    92 RSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSD 151

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTIS 202
             WKAHSKICGT+EY+CDCGTLFSR+DSFITHRAFCDALAEESA+  T S
Sbjct:   152 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAKNHTQS 199

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 205/398 (51%), Positives = 240/398 (60%)

Query:     1 MMSQDHG-LSVPSTL--KGFVQEXXXXXXXXXXXXQLKRKRNLPGTPDPDAEVIALSPKS 57
             MM  DH  LS PS +  +  +                KRKRNLPG PDPDAEVIALSP S
Sbjct:     2 MMPDDHHPLSFPSYVLHQEHIAPNPNPNPNPTSSNSAKRKRNLPGNPDPDAEVIALSPNS 61

Query:    58 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKE-VRKKVYICPEKSCVHHD 116
             LM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKLKQRTNKE V+KKVYICPEK+CVHHD
Sbjct:    62 LMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHD 121

Query:   117 PSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYRCDCGTLFS 176
             P+RALGDLTGIKKHFSRKHG            YAV SDWKAHSKICGT+EYRCDCGTLFS
Sbjct:   122 PARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFS 181

Query:   177 RKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPXXXXXXXXXXXXAPGSELAGNNV 236
             RKDSFITHRAFCDALAEESARF ++    P A A +                 +    N 
Sbjct:   182 RKDSFITHRAFCDALAEESARFVSV----PPAPAYLNNALDVEVNHGNINQNHQQRQLNT 237

Query:   237 IADGQKPRLPLWLDQANN----SNAMLTPIGSSSTGLPELSQMVSPMNMFGSLSQM--QW 290
              +  Q  + P +    NN       + T + +SS+     S   S  N++    Q   QW
Sbjct:   238 TSS-QLDQ-PGFNTNRNNIAFLGQTLPTNVFASSSSPSPRSASDSLQNLWHLQGQSSHQW 295

Query:   291 FSGGANLXXXXXXXLPRGIPKEEEENKAYNLSESMTSLYPSNQSGXXXXXXXXXXXXGLA 350
                  N        L RGI K +EE++  N+  S  SL+ S                 +A
Sbjct:   296 LLNENN--NNNNNILQRGISKNQEEHEMKNVI-SNGSLFSSEARNNTNNYNQNGGQ--IA 350

Query:   351 HMSATALLQKAAQMGSTRSNAN--NSTGFGLMSTSFNS 386
              MSATALLQKAAQMGS RS+++  NS  FGLM++ FN+
Sbjct:   351 SMSATALLQKAAQMGSKRSSSSSSNSKTFGLMTSIFNN 388

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
 Identities = 131/172 (76%), Positives = 148/172 (86%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRN P TP+ DAEVIALSPK+LMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    52 KKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 111

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++ KEV++KVY+CPE SCVHHDPSRALGDLTGIKKH+ RKHG            YAVQSD
Sbjct:   112 KSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSD 171

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNP 206
             WKAHSK CGT+EYRCDCGTLFSR+DSFITHRAFCDALA+ESAR  T  ++ P
Sbjct:   172 WKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTSLTSLP 223

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 140/178 (78%), Positives = 151/178 (84%)

Query:    34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
             +K+KRNLPG PDP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLK
Sbjct:    40 VKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLK 99

Query:    94 QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             QRT+KEVRK+VY+CPEKSCVHH P+RALGDLTGIKKHF RKHG            YAVQS
Sbjct:   100 QRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQS 159

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAA 211
             DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+AR    S     AA A
Sbjct:   160 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATA 217

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 4.1e-85, Sum P(3) = 4.1e-85
 Identities = 133/163 (81%), Positives = 148/163 (90%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRNLPG PDP++EVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct:    34 KKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 93

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++NKEV+KKVY+CPE SCVHHDPSRALGDLTGIKKHF RKHG            YAVQSD
Sbjct:    94 KSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSD 153

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESAR 197
             WKAHSKICGT+EY+CDCGTLFSR+DSFITHRAFCDALAEE+AR
Sbjct:   154 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENAR 196

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
 Identities = 138/180 (76%), Positives = 152/180 (84%)

Query:    34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
             +K+KRNLPG PDP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLK
Sbjct:    36 VKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLK 95

Query:    94 QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             QRT+KEVRK+VY+CPEK+CVHH  SRALGDLTGIKKHF RKHG            YAVQS
Sbjct:    96 QRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQS 155

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIP 213
             DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+A+   +S  N  AAA  P
Sbjct:   156 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAP 215

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
 Identities = 134/172 (77%), Positives = 147/172 (85%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KR LPG PDPDAEVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query:    95 RTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             +  KE  +KKVY+CPE +C HH PSRALGDLTGIKKHF RKHG            YAVQS
Sbjct:   113 KNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQS 172

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTN 205
             DWKAH+KICGTR+YRCDCGTLFSRKD+FITHRAFCDALAEESAR  + SS+N
Sbjct:   173 DWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHSTSSSN 224

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 194/440 (44%), Positives = 255/440 (57%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K++RN PG P+PDAEV+ALSPK+LMATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    54 KKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQ 113

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++ KEV++KVY+CPE +CVHHDPSRALGDLTGIKKH+ RKHG            YAVQSD
Sbjct:   114 KSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSD 173

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPX 214
             WKAHSK CGT+EYRCDCGT+FSR+DS+ITHRAFCDAL +E+AR  T+S T+  AA++   
Sbjct:   174 WKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETARNPTVSFTSMTAASS--- 230

Query:   215 XXXXXXXXXXXAPGSELAGNNVIAD----GQKPRLPLWLDQANNSNAM-LTPIGSSSTGL 269
                          GS L+ ++ ++D    G  P +   L+ A++ N     P  S+   L
Sbjct:   231 GVGSGGIYGRLGGGSALSHHH-LSDHPNFGFNPLVGYNLNIASSDNRRDFIPQSSNPNFL 289

Query:   270 PELSQMVSPMNMFGSLSQMQWFSGGANLXXXXXXXLPRGIPKEEEENKAYNLS------- 322
              + +     +N   + +   + +    +       +   +      N  +NL        
Sbjct:   290 IQSASSQGMLNTTPNNNNQSFMNQHGLIQFDPVDNI--NLKSSGTNNSFFNLGFFQENTK 347

Query:   323 ESMTSLYPSNQSGXXXXXXXXXXXXGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMST 382
              S TSL PS  S               +++SATALLQKA QMGS  SN  ++   GL S+
Sbjct:   348 NSETSL-PSLYSTDVLVHHREENLNAGSNVSATALLQKATQMGSVTSNDPSALFRGLASS 406

Query:   383 SFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMAN 442
             S NS      + +   F        DN+ NL  L MNS +   N G  +G S   +   +
Sbjct:   407 S-NS-----SSVIANHFGGGRIMENDNNGNLQGL-MNSLAA-VNGGGGSGGSIFDVQFGD 458

Query:   443 AKNASNEAERRLTRDFLGVG 462
               N S     +LT DFLGVG
Sbjct:   459 NGNMSGSD--KLTLDFLGVG 476

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
 Identities = 132/165 (80%), Positives = 145/165 (87%)

Query:    34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
             LKRKRN PG PDP+AEV+ALSPK+LMATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWKLK
Sbjct:    62 LKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLK 121

Query:    94 QRTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQ 152
             QR+NK+V RKKVY+CPE  CVHH PSRALGDLTGIKKHF RKHG            YAVQ
Sbjct:   122 QRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQ 181

Query:   153 SDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESAR 197
             SDWKAH+K CGT+EY+CDCGTLFSR+DSFITHRAFCDALAEESAR
Sbjct:   182 SDWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAR 226

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q700D2	JKD_ARATH	No assigned EC number	0.4873	0.8739	0.8548	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.93
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.9
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.74
KOG3576	267	consensus Ovo and related transcription factors [T	99.7
KOG3608	467	consensus Zn finger proteins [General function pre	99.68
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.62
KOG3608	467	consensus Zn finger proteins [General function pre	99.58
KOG3576	267	consensus Ovo and related transcription factors [T	99.58
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.46
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.46
PLN03086	567	PRLI-interacting factor K; Provisional	99.21
PLN03086	567	PRLI-interacting factor K; Provisional	99.01
PHA00733	128	hypothetical protein	98.99
PHA00733	128	hypothetical protein	98.95
KOG3993	500	consensus Transcription factor (contains Zn finger	98.93
PHA02768	55	hypothetical protein; Provisional	98.54
PHA02768	55	hypothetical protein; Provisional	98.51
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.38
KOG3993	500	consensus Transcription factor (contains Zn finger	98.29
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.05
PHA00616	44	hypothetical protein	97.97
PHA00732	79	hypothetical protein	97.93
PHA00616	44	hypothetical protein	97.75
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.69
PHA00732	79	hypothetical protein	97.64
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.52
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.51
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.49
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.26
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	97.19
COG5048	467	FOG: Zn-finger [General function prediction only]	97.13
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.13
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.08
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.0
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.91
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.63
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.46
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.38
smart00355	26	ZnF_C2H2 zinc finger.	96.37
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.25
KOG1146	1406	consensus Homeobox protein [General function predi	96.05
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.84
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.69
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.51
PRK04860	160	hypothetical protein; Provisional	95.45
COG5048	467	FOG: Zn-finger [General function prediction only]	95.22
PRK04860	160	hypothetical protein; Provisional	94.35
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.13
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.29
KOG1146	1406	consensus Homeobox protein [General function predi	93.2
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.16
smart00355	26	ZnF_C2H2 zinc finger.	93.01
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	92.73
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	92.63
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.44
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	92.04
KOG2893	341	consensus Zn finger protein [General function pred	91.82
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.73
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.25
KOG1883	1517	consensus Cofactor required for Sp1 transcriptiona	91.04
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.83
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.62
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	88.64
KOG2893	341	consensus Zn finger protein [General function pred	87.28
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	86.67
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	85.71
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	85.07
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	83.12
KOG4407	1973	consensus Predicted Rho GTPase-activating protein	82.7
KOG2186	276	consensus Cell growth-regulating nucleolar protein	82.0
KOG4377	480	consensus Zn-finger protein [General function pred	81.94
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	81.44
KOG2071	579	consensus mRNA cleavage and polyadenylation factor	81.14
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	80.96
KOG3648	1179	consensus Golgi apparatus protein (cysteine-rich f	80.07

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.93  E-value=5.6e-27  Score=223.14  Aligned_cols=135  Identities=21%  Similarity=0.395  Sum_probs=127.2

Q ss_pred             CCCCCCCCCCCCCCCChhHhhhCccccCC---CCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           32 NQLKRKRNLPGTPDPDAEVIALSPKSLMA---TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        32 ~~~~~~c~~cg~~~~~~~~l~~h~~~h~~---~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      ...+++|..||+.+.+...|.+|...|..   .+.+.|++|||.|...-.|+.|+|+|+               -+++|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~  191 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECG  191 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccc
Confidence            45689999999999999999999999854   678999999999999999999999996               678999


Q ss_pred             CCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHh
Q 011146          109 EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRA  186 (492)
Q Consensus       109 ~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~  186 (492)
                      +|       ||+|.+..-|..|+|+|+|||||.|..|+|.|+.+++|+.|+.+ .+.|.|.|. |+|+|.+++.|.+|..
T Consensus       192 iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 IC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            99       99999999999999999999999999999999999999999999 788999999 9999999999999986


Q ss_pred             Hh
Q 011146          187 FC  188 (492)
Q Consensus       187 ~h  188 (492)
                      ..
T Consensus       265 S~  266 (279)
T KOG2462|consen  265 SA  266 (279)
T ss_pred             hc
Confidence            54

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.90  E-value=1.4e-24  Score=206.75  Aligned_cols=133  Identities=23%  Similarity=0.383  Sum_probs=126.4

Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCCCC---CCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHH
Q 011146            7 GLSVPSTLKGFVQEPNSNPNPNPSS---NQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHR   83 (492)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~   83 (492)
                      -|.|+.|+|.+....+|..|...|.   .++-+.|+.|||.|.+.-.|+.|.++|+  -+++|.+|||.|.+.-.|+-|+
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccc
Confidence            4999999999999999999987664   4778999999999999999999999998  6799999999999999999999


Q ss_pred             HhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146           84 RGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus        84 r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |+|+             |||||.|..|       +|+|.++++|+.||.+|.+.|+|.|..|+|.|..++.|.+|...
T Consensus       208 RTHT-------------GEKPF~C~hC-------~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  208 RTHT-------------GEKPFSCPHC-------GKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cccc-------------CCCCccCCcc-------cchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            9998             9999999999       99999999999999999999999999999999999999999876

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.74  E-value=2.2e-19  Score=191.36  Aligned_cols=80  Identities=20%  Similarity=0.478  Sum_probs=71.7

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhhcCCC-----ceeec----CCCc
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTR-----EYRCD----CGTL  174 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~k-----p~~C~----C~k~  174 (492)
                      |-.|-+|       .|.+..++.|+.|+|+|+|||||+|.+||+.|.++.+|+.|+-+|..+     +|.|.    |-+.
T Consensus       605 PNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~k  677 (958)
T KOG1074|consen  605 PNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKK  677 (958)
T ss_pred             ccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccc
Confidence            3467777       999999999999999999999999999999999999999999886554     38884    8899


Q ss_pred             cCChhHHHHHHhHhcC
Q 011146          175 FSRKDSFITHRAFCDA  190 (492)
Q Consensus       175 F~~~~~L~~H~~~h~~  190 (492)
                      |...-.|..|++.|.+
T Consensus       678 ftn~V~lpQhIriH~~  693 (958)
T KOG1074|consen  678 FTNAVTLPQHIRIHLG  693 (958)
T ss_pred             ccccccccceEEeecC
Confidence            9999999999999974

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.70  E-value=5.8e-18  Score=153.98  Aligned_cols=116  Identities=23%  Similarity=0.524  Sum_probs=106.4

Q ss_pred             CCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcc
Q 011146           60 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (492)
Q Consensus        60 ~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp  139 (492)
                      +...|.|.+|+|.|.-...|.+|++-|.             .-|.|.|..|       |+.|.+.-.|++|+|+|+|.+|
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvrp  173 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVRP  173 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCccc
Confidence            3467999999999999999999999998             8899999999       9999999999999999999999


Q ss_pred             cccCcCccccCChHHHHHhhhh-cC-----------CCceeec-CCCccCChhHHHHHHhHhcCccccc
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI-CG-----------TREYRCD-CGTLFSRKDSFITHRAFCDALAEES  195 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~-~~-----------~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~  195 (492)
                      |+|..|+|.|..+-.|..|++. ||           +|.|.|+ ||.+-.+...+..|++.|+...+..
T Consensus       174 ykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spal  242 (267)
T KOG3576|consen  174 YKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPAL  242 (267)
T ss_pred             cchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHH
Confidence            9999999999999999999987 65           4679999 9999999999999999998755443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.68  E-value=5.2e-18  Score=165.51  Aligned_cols=153  Identities=19%  Similarity=0.290  Sum_probs=90.7

Q ss_pred             CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHhhhCccccC--CCCceecccccccccChhhHHHHHHhcCCCccc
Q 011146           15 KGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLM--ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKL   92 (492)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~~~~~~~l~~h~~~h~--~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~   92 (492)
                      +.+.....++.|...+.+++..-|..||.-|+.+..|-.|.+.-+  ...+|.|..|.|.|.++..|+.|++.|.     
T Consensus       187 ~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv-----  261 (467)
T KOG3608|consen  187 KHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV-----  261 (467)
T ss_pred             hhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh-----
Confidence            334444455555555555666666666666666665555554432  2445666666666666666666666554     


Q ss_pred             ccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcc-cCCCcccccCcCccccCChHHHHHhhhhcCCCceeec-
Q 011146           93 KQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-  170 (492)
Q Consensus        93 ~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~-H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-  170 (492)
                                ..|+|+.|       ..+....+.|..|++. |..+|||+|+.|++.|.+.++|.+|..+|.+..|.|+ 
T Consensus       262 ----------n~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h  324 (467)
T KOG3608|consen  262 ----------NCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEH  324 (467)
T ss_pred             ----------hccccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCC
Confidence                      34666666       6666666666666665 5556666666666666666666666666555566663 


Q ss_pred             --CCCccCChhHHHHHHhHhc
Q 011146          171 --CGTLFSRKDSFITHRAFCD  189 (492)
Q Consensus       171 --C~k~F~~~~~L~~H~~~h~  189 (492)
                        |...|+++..+++|++.++
T Consensus       325 ~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  325 PDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             CCCcHHHHHHHHHHHHHHHhc
Confidence              6666666666666665555

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.62  E-value=1.2e-16  Score=170.59  Aligned_cols=58  Identities=19%  Similarity=0.475  Sum_probs=54.9

Q ss_pred             cccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHhHhcCccccccc
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDALAEESAR  197 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~~~~~  197 (492)
                      ..|.+|++.|...+.|..|+|+ +++|||.|. |++.|..+..|+.||.+|++....+.+
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            6899999999999999999999 899999999 999999999999999999998777666

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.58  E-value=2e-16  Score=154.57  Aligned_cols=169  Identities=15%  Similarity=0.219  Sum_probs=146.4

Q ss_pred             CCCCCCCCCCCCCCCcCCCCCCCCCCCC--CCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHH
Q 011146            3 SQDHGLSVPSTLKGFVQEPNSNPNPNPS--SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQ   80 (492)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~   80 (492)
                      ++|+..-||.|+.-|....-+..|-.+.  -....|.|..|-|.|.++..|..|+..|..-  |+|+.|+.+-...+.|.
T Consensus       203 s~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~--ykCplCdmtc~~~ssL~  280 (467)
T KOG3608|consen  203 SNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC--YKCPLCDMTCSSASSLT  280 (467)
T ss_pred             CCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc--ccccccccCCCChHHHH
Confidence            4677788999999998777666664322  2344899999999999999999999998765  99999999999999999


Q ss_pred             HHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc--CccccCChHHHHHh
Q 011146           81 LHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAH  158 (492)
Q Consensus        81 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H  158 (492)
                      .|+|.-+            .++|||+|+.|       .+.|.+.+.|.+|...|. +-.|.|+.  |...|.....+++|
T Consensus       281 ~H~r~rH------------s~dkpfKCd~C-------d~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H  340 (467)
T KOG3608|consen  281 THIRYRH------------SKDKPFKCDEC-------DTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRH  340 (467)
T ss_pred             HHHHhhh------------ccCCCccccch-------hhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHH
Confidence            9988644            38999999999       999999999999999988 77899988  99999999999999


Q ss_pred             hhh-c-C--CCceeec-CCCccCChhHHHHHHhHhcCccc
Q 011146          159 SKI-C-G--TREYRCD-CGTLFSRKDSFITHRAFCDALAE  193 (492)
Q Consensus       159 ~~~-~-~--~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~  193 (492)
                      ++. + |  +-+|.|. |++.|.+-.+|..|+++-|+..-
T Consensus       341 ~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~  380 (467)
T KOG3608|consen  341 FLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRL  380 (467)
T ss_pred             HHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccC
Confidence            988 4 3  3579999 99999999999999988776543

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.58  E-value=2.1e-16  Score=143.81  Aligned_cols=111  Identities=24%  Similarity=0.408  Sum_probs=104.0

Q ss_pred             CCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        31 ~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .....+.|.+|||.|.-.-.|.+|++-|...|+|.|..|||.|..-..|++|+|+|+             +-+||+|..|
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rtht-------------gvrpykc~~c  179 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHT-------------GVRPYKCSLC  179 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcccc-------------Cccccchhhh
Confidence            345689999999999999999999999999999999999999999999999999998             9999999999


Q ss_pred             CCCCCCCCCcccChhhHHhhhcccCC-----------CcccccCcCccccCChHHHHHhhhh
Q 011146          111 SCVHHDPSRALGDLTGIKKHFSRKHG-----------EKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       111 ~C~~~~c~k~f~~~s~L~~H~~~H~~-----------ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                             +++|..+..|..|++.-+|           +|.|.|+.||.+-.+...+..|++.
T Consensus       180 -------~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  180 -------EKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             -------hHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence                   9999999999999988655           5789999999999999999999987

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.46  E-value=1.1e-14  Score=153.41  Aligned_cols=105  Identities=25%  Similarity=0.575  Sum_probs=95.1

Q ss_pred             eecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCC-------
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG-------  136 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~-------  136 (492)
                      ..|.+|.+.+++...|+.|++.-+           +..+.-|.|..|       .++|..+..|.+||.+|..       
T Consensus       211 ltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~s  272 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAIS  272 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCccccc
Confidence            579999999999999999976543           135677999999       9999999999999999852       


Q ss_pred             ------CcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHh
Q 011146          137 ------EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRA  186 (492)
Q Consensus       137 ------ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~  186 (492)
                            .|+|+|..|+|.|+.+.+|+.|+|+ .|||||.|+ |+|+|+...++..||-
T Consensus       273 ltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  273 LTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence                  4789999999999999999999999 899999999 9999999999999985

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.46  E-value=1.5e-14  Score=152.38  Aligned_cols=81  Identities=25%  Similarity=0.596  Sum_probs=74.8

Q ss_pred             CCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcc
Q 011146           60 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (492)
Q Consensus        60 ~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp  139 (492)
                      .+-.|.|+.|+|.|...+.|.+|.-.|+             |.+||.|.+|       .|+|..+.+|..|+|.|.||||
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHs-------------GqRPyqC~iC-------kKAFKHKHHLtEHkRLHSGEKP  950 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHS-------------GQRPYQCIIC-------KKAFKHKHHLTEHKRLHSGEKP  950 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhc-------------CCCCcccchh-------hHhhhhhhhhhhhhhhccCCCc
Confidence            3457999999999999999999999998             9999999999       9999999999999999999999


Q ss_pred             cccCcCccccCChHHHHHhhh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~  160 (492)
                      |.|++|+|+|.....+..||.
T Consensus       951 fQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  951 FQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             chhhhhhhhcccccchHhhhc
Confidence            999999999999999998885

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.21  E-value=2.2e-11  Score=129.73  Aligned_cols=103  Identities=23%  Similarity=0.460  Sum_probs=88.0

Q ss_pred             CceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccc
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~  141 (492)
                      +.+.|++|++.|. ...|..|++.|+               ++|.|+ |       ++.+ .+..|..|+++|.++|++.
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi~  506 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLIT  506 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCcee
Confidence            3468999999996 678999999885               689998 7       8755 6789999999999999999


Q ss_pred             cCcCccccC----------ChHHHHHhhhhcCCCceeec-CCCccCChhHHHHHHhHhcC
Q 011146          142 CEKCSKKYA----------VQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       142 C~~C~k~F~----------~~~~L~~H~~~~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      |.+|++.|.          ....|..|+.++|.+++.|. |++.|..+ .|..|+..+|.
T Consensus       507 C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        507 CRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             CCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            999999985          24589999999999999999 99988765 56788877664

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.01  E-value=4.2e-10  Score=120.12  Aligned_cols=102  Identities=14%  Similarity=0.255  Sum_probs=87.1

Q ss_pred             CCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCC
Q 011146           33 QLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSC  112 (492)
Q Consensus        33 ~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C  112 (492)
                      +..+.|..||+.|. ...|..|.+.++  ++|.|+ ||+.| .+..|..|++.|.             .++++.|++|  
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thC-------------p~Kpi~C~fC--  510 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTC-------------PLRLITCRFC--  510 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccC-------------CCCceeCCCC--
Confidence            34579999999996 678999999985  789999 99866 5689999999998             8999999999  


Q ss_pred             CCCCCCCccc----------ChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          113 VHHDPSRALG----------DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       113 ~~~~c~k~f~----------~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                           ++.|.          ....|..|...+ |.+++.|..|++.|..+ ++..|+..
T Consensus       511 -----~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        511 -----GDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             -----CCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHH
Confidence                 88874          246899999996 99999999999988765 77888766

>PHA00733 hypothetical protein

Probab=98.99  E-value=4.9e-10  Score=98.52  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=60.6

Q ss_pred             CCCCCCCCCCCCC-CChhHhhhCccccCCCCceecccccccccChhhHHHH--HHhcCCCcccccccccccCcccccCCC
Q 011146           33 QLKRKRNLPGTPD-PDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        33 ~~~~~c~~cg~~~-~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H--~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .++|..+-.|--| .+.+.|.++-..--..+++.|.+|.+.|.....|..|  ++.|.          ...++++|.|+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~   78 (128)
T PHA00733          9 SKKYLSNHKGIFIHVTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPL   78 (128)
T ss_pred             hHhhcccCCCeEEecCHHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCC
Confidence            3444433334222 3345555554433445677777777777776666655  22221          001355666666


Q ss_pred             CCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          110 KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       110 C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |       ++.|.....|..|++.|  +++|.|.+|++.|.....|..|+..
T Consensus        79 C-------gk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~  121 (128)
T PHA00733         79 C-------LMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCK  121 (128)
T ss_pred             C-------CCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHH
Confidence            6       66666666666666654  3456666666666666666666554

>PHA00733 hypothetical protein

Probab=98.95  E-value=5.9e-10  Score=97.96  Aligned_cols=84  Identities=15%  Similarity=0.273  Sum_probs=69.7

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhh--h---cccCCCcccccCcCccccCChHHHHHhhhhcCCCceeec-CCCc
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKH--F---SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTL  174 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H--~---~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~  174 (492)
                      ..+++.|.+|       .+.|.....|..|  +   ..+++++||.|+.|++.|.....|..|++.+ +.+|.|. |++.
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~  108 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE  108 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence            5788999998       7777766665554  1   2334589999999999999999999999874 5689999 9999


Q ss_pred             cCChhHHHHHHhHhcCcc
Q 011146          175 FSRKDSFITHRAFCDALA  192 (492)
Q Consensus       175 F~~~~~L~~H~~~h~~~~  192 (492)
                      |.....|.+|+...|++.
T Consensus       109 F~~~~sL~~H~~~~h~~~  126 (128)
T PHA00733        109 FRNTDSTLDHVCKKHNIC  126 (128)
T ss_pred             cCCHHHHHHHHHHhcCcc
Confidence            999999999999888753

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.93  E-value=1.1e-10  Score=117.12  Aligned_cols=150  Identities=17%  Similarity=0.222  Sum_probs=113.2

Q ss_pred             CCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCC-Cccc---------cc----------
Q 011146           35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNL-PWKL---------KQ----------   94 (492)
Q Consensus        35 ~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~-~~~~---------~~----------   94 (492)
                      .|.|.+|...|.|...|..|.-.-..-.-|+|++|+|.|....+|--|+|+|.- +...         ..          
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            589999999999999999997665555569999999999999999999999971 1100         00          


Q ss_pred             ccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC---c---------------------------------
Q 011146           95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE---K---------------------------------  138 (492)
Q Consensus        95 ~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e---k---------------------------------  138 (492)
                      +.-....+.-|.|.+|       ++.|.+...|++|..+|+..   +                                 
T Consensus       347 rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~  419 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGD  419 (500)
T ss_pred             ccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccc
Confidence            0111133457999999       99999999999998887521   0                                 


Q ss_pred             ----------ccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHhHhcCc
Q 011146          139 ----------KWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDAL  191 (492)
Q Consensus       139 ----------p~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~  191 (492)
                                ...|++|+..+..+..--.|.+. +-+.-|.|+ |.-.|.....|.+|+..+|..
T Consensus       420 ~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  420 EVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             ceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence                      12456666666665555555554 555669999 999999999999999988853

>PHA02768 hypothetical protein; Provisional

Probab=98.54  E-value=3.5e-08  Score=72.49  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             ceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHH
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK  128 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~  128 (492)
                      -|+|++|||.|.+..+|..|+|+|+               ++|+|..|       ++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeE
Confidence            4899999999999999999999995               68999998       99998777664

>PHA02768 hypothetical protein; Provisional

Probab=98.51  E-value=3.5e-08  Score=72.51  Aligned_cols=44  Identities=14%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHH
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWK  156 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~  156 (492)
                      -|.|++|       |+.|...+.|..|+++|+  ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3778887       888888888888888887  6788888888888766653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.38  E-value=1.3e-07  Score=59.37  Aligned_cols=26  Identities=31%  Similarity=0.824  Sum_probs=23.5

Q ss_pred             hHHhhhcccCCCcccccCcCccccCC
Q 011146          126 GIKKHFSRKHGEKKWKCEKCSKKYAV  151 (492)
Q Consensus       126 ~L~~H~~~H~~ekp~~C~~C~k~F~~  151 (492)
                      +|.+|+++|+++|||.|++|++.|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999863

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.29  E-value=1.6e-07  Score=94.73  Aligned_cols=84  Identities=18%  Similarity=0.414  Sum_probs=69.7

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhhcCC-------------------
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGT-------------------  164 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~-------------------  164 (492)
                      .|+|..|       ...|.+.-.|..|.-.-.-.--|+|..|+|.|.-..+|..|.|+|.-                   
T Consensus       267 dyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r  339 (500)
T KOG3993|consen  267 DYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR  339 (500)
T ss_pred             HHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence            5999999       99999999999996443333449999999999999999999987421                   


Q ss_pred             ---------------Cceeec-CCCccCChhHHHHHHhHhcCcccc
Q 011146          165 ---------------REYRCD-CGTLFSRKDSFITHRAFCDALAEE  194 (492)
Q Consensus       165 ---------------kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~~  194 (492)
                                     ..|.|. |+|.|++...|++|...|+.....
T Consensus       340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~  385 (500)
T KOG3993|consen  340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLA  385 (500)
T ss_pred             hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccc
Confidence                           129999 999999999999999999865443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.05  E-value=1.1e-06  Score=55.08  Aligned_cols=26  Identities=15%  Similarity=0.430  Sum_probs=23.9

Q ss_pred             HhhhCccccCCCCceecccccccccC
Q 011146           50 VIALSPKSLMATNRFLCEICNKGFQR   75 (492)
Q Consensus        50 ~l~~h~~~h~~~k~~~C~~Cgk~F~~   75 (492)
                      .|..|++.|+++|+|.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999999974

...

>PHA00616 hypothetical protein

Probab=97.97  E-value=2.8e-06  Score=59.52  Aligned_cols=34  Identities=12%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             ceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      +|.|..||+.|..+..|..|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            6899999999999999999999998             889998875

>PHA00732 hypothetical protein

Probab=97.93  E-value=6.7e-06  Score=65.97  Aligned_cols=48  Identities=23%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             ceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      +|.|++|++.|.+...|+.|++.++             .  ++.|++|       ++.|.   .|..|++++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H-------------~--~~~C~~C-------gKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH-------------T--LTKCPVC-------NKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc-------------C--CCccCCC-------CCEeC---ChhhhhcccC
Confidence            4667777777777777777766422             1  2456666       66665   3666665554

>PHA00616 hypothetical protein

Probab=97.75  E-value=7.2e-06  Score=57.52  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=27.9

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ||.|..|       |+.|..+..|.+|++.|++++++.|+.-
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            5778887       8888888888888888888888887654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.69  E-value=2.3e-05  Score=47.37  Aligned_cols=23  Identities=43%  Similarity=0.902  Sum_probs=21.7

Q ss_pred             eecccccccccChhhHHHHHHhc
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      |+|++|++.|.++..|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            79999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00732 hypothetical protein

Probab=97.64  E-value=3.5e-05  Score=61.81  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=38.5

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcc-cCCCcccccCcCccccCChHHHHHhhhh
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~-H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ||.|++|       ++.|.....|+.|++. |.   ++.|+.|++.|.   .|..|.++
T Consensus         1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPIC-------GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCC-------CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            5889998       9999999999999985 65   368999999998   58888866

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.52  E-value=2.8e-05  Score=76.11  Aligned_cols=69  Identities=22%  Similarity=0.534  Sum_probs=39.0

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcc-cCCCcccccC--cCccccCChHHHHHhhhhcCCCceeec-CCCccCC
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCE--KCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSR  177 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~-H~~ekp~~C~--~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~F~~  177 (492)
                      +|||+|++-+|     .|+|....+|+-|+.. |-..+...-+  +--..|           ....|||+|+ |+|+|+.
T Consensus       347 ~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F-----------~~~~KPYrCevC~KRYKN  410 (423)
T COG5189         347 GKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF-----------SAKDKPYRCEVCDKRYKN  410 (423)
T ss_pred             CceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCCCccccccc-----------cccCCceeccccchhhcc
Confidence            47777777666     7777777777777655 3211111100  000011           1245777777 7777777


Q ss_pred             hhHHHHHHh
Q 011146          178 KDSFITHRA  186 (492)
Q Consensus       178 ~~~L~~H~~  186 (492)
                      ...|+.|+.
T Consensus       411 lNGLKYHr~  419 (423)
T COG5189         411 LNGLKYHRK  419 (423)
T ss_pred             Cccceeccc
Confidence            777777754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.51  E-value=4.3e-05  Score=74.85  Aligned_cols=26  Identities=23%  Similarity=0.617  Sum_probs=23.2

Q ss_pred             CCCCceeccc--ccccccChhhHHHHHH
Q 011146           59 MATNRFLCEI--CNKGFQRDQNLQLHRR   84 (492)
Q Consensus        59 ~~~k~~~C~~--Cgk~F~~~~~L~~H~r   84 (492)
                      .++|||+|++  |.|+|+...-|+.|+.
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhh
Confidence            3469999987  9999999999999975

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.49  E-value=9.6e-05  Score=54.87  Aligned_cols=52  Identities=25%  Similarity=0.514  Sum_probs=32.4

Q ss_pred             ceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      .|.|++|++. .+...|..|....+.           ...+.+.|++|       ...+.  ..|..|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~-----------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHR-----------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCc-----------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            4788888884 445678888554331           13456788887       55433  36777776654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.26  E-value=0.0002  Score=43.26  Aligned_cols=24  Identities=42%  Similarity=0.899  Sum_probs=20.3

Q ss_pred             eecccccccccChhhHHHHHHhcC
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |.|++|++.|.+...|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998874

...

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00052  Score=74.84  Aligned_cols=62  Identities=18%  Similarity=0.303  Sum_probs=39.0

Q ss_pred             CCcccChhhHHhhhcccCCCcccccCcCc------cccCChHHHHHhhhhcCCCceeec---CC-CccCChhHHHHHHh
Q 011146          118 SRALGDLTGIKKHFSRKHGEKKWKCEKCS------KKYAVQSDWKAHSKICGTREYRCD---CG-TLFSRKDSFITHRA  186 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~ekp~~C~~C~------k~F~~~~~L~~H~~~~~~kp~~C~---C~-k~F~~~~~L~~H~~  186 (492)
                      ...|.+...|.+|++.++    |.|.+|.      .-|..-.+|..|.+.   .-|.|+   |. +.|.....+..|++
T Consensus       189 ~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~---~HflCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  189 HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK---GHFLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh---cCccccccccccceeeehhHHHHHHH
Confidence            788888888888888765    5566663      345666778888765   235663   53 34444444554544

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=97.13  E-value=0.0004  Score=72.29  Aligned_cols=144  Identities=19%  Similarity=0.218  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCCCChhHhhhCcc--ccCCC--Cceecc--cccccccChhhHHHHHHhcCCC--ccccc--ccc------
Q 011146           34 LKRKRNLPGTPDPDAEVIALSPK--SLMAT--NRFLCE--ICNKGFQRDQNLQLHRRGHNLP--WKLKQ--RTN------   97 (492)
Q Consensus        34 ~~~~c~~cg~~~~~~~~l~~h~~--~h~~~--k~~~C~--~Cgk~F~~~~~L~~H~r~H~~~--~~~~~--~~~------   97 (492)
                      .++.|..|...|.....+..|.+  .|..+  +++.|+  .|++.|.+...|..|...|...  ..+..  ...      
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            57999999999999999999999  89999  999999  7999999999999999999721  11110  000      


Q ss_pred             ------------cccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc--ccccCcCccccCChHHHHHhhhh-c
Q 011146           98 ------------KEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK--KWKCEKCSKKYAVQSDWKAHSKI-C  162 (492)
Q Consensus        98 ------------~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek--p~~C~~C~k~F~~~~~L~~H~~~-~  162 (492)
                                  .....+.+.|..-.|     .+.+.....+..|...|...+  .+.|..|.+.|.....+..|++. .
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             CCCCccchhhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence                        011223333333222     666677777777777776655  45567788888888888887777 3


Q ss_pred             CCCceeecCCCccCChhHHH
Q 011146          163 GTREYRCDCGTLFSRKDSFI  182 (492)
Q Consensus       163 ~~kp~~C~C~k~F~~~~~L~  182 (492)
                      ...++.|.+-+.|.....+.
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~  462 (467)
T COG5048         443 NHAPLLCSILKSFRRDLDLS  462 (467)
T ss_pred             cCCceeeccccccchhhhhh
Confidence            33444444444444444433

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.13  E-value=0.00055  Score=50.79  Aligned_cols=47  Identities=19%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             ccCCCCCCCCCCCCCcccChhhHHhhhcc-cCCC-cccccCcCccccCChHHHHHhhhh
Q 011146          105 YICPEKSCVHHDPSRALGDLTGIKKHFSR-KHGE-KKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       105 y~C~~C~C~~~~c~k~f~~~s~L~~H~~~-H~~e-kp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |.|++|       ++ ..+...|..|... |..+ +.+.|++|...+.  .+|..|+..
T Consensus         3 f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            566666       66 3445566666555 3332 4566666665433  255556554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.08  E-value=0.00029  Score=44.26  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=23.5

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|+|++|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999999885

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.00  E-value=0.00043  Score=57.39  Aligned_cols=72  Identities=18%  Similarity=0.452  Sum_probs=15.3

Q ss_pred             ecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc
Q 011146           65 LCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (492)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~  144 (492)
                      +|.+|+..|.....|..|+...+             +-.   ...        ...+.....+..+++... ...|.|.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H-------------~~~---~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~   55 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH-------------GFD---IPD--------QKYLVDPNRLLNYLRKKV-KESFRCPY   55 (100)
T ss_dssp             -------------------------------------------------------------------------SSEEBSS
T ss_pred             Ccccccccccccccccccccccc-------------ccc---ccc--------cccccccccccccccccc-CCCCCCCc
Confidence            47788888888888888875443             110   000        111222233333333221 12566777


Q ss_pred             CccccCChHHHHHhhhh
Q 011146          145 CSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       145 C~k~F~~~~~L~~H~~~  161 (492)
                      |++.|.....|..|++.
T Consensus        56 C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   56 CNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SS-EESSHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHcC
Confidence            77777777777777665

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00091  Score=72.99  Aligned_cols=49  Identities=12%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             ccCcCccccCChHHHHHhhhhcCCCceee---c-CCCccCChhHHHHHHhHhc
Q 011146          141 KCEKCSKKYAVQSDWKAHSKICGTREYRC---D-CGTLFSRKDSFITHRAFCD  189 (492)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~~~~~kp~~C---~-C~k~F~~~~~L~~H~~~h~  189 (492)
                      .|..|...|.....|.+|++...+.-..|   + +..-|...+.|..|-+..|
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC
Confidence            35555555555555555554421212222   1 2344445555555555444

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.91  E-value=0.00065  Score=40.88  Aligned_cols=21  Identities=38%  Similarity=0.812  Sum_probs=10.8

Q ss_pred             eeec-CCCccCChhHHHHHHhH
Q 011146          167 YRCD-CGTLFSRKDSFITHRAF  187 (492)
Q Consensus       167 ~~C~-C~k~F~~~~~L~~H~~~  187 (492)
                      |.|+ |++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4454 55555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.63  E-value=0.0013  Score=54.38  Aligned_cols=73  Identities=15%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             cCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhhcCCCceeec-CCCccCChhHHHHH
Q 011146          106 ICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITH  184 (492)
Q Consensus       106 ~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~F~~~~~L~~H  184 (492)
                      .|.+|       +..|.....|..|+...++...-    ....+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            37777       99999999999999886654321    11122234444444444333479999 99999999999999


Q ss_pred             HhHhc
Q 011146          185 RAFCD  189 (492)
Q Consensus       185 ~~~h~  189 (492)
                      ++.+.
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            99753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.46  E-value=0.0024  Score=38.34  Aligned_cols=22  Identities=27%  Similarity=0.664  Sum_probs=10.4

Q ss_pred             eeec-CCCccCChhHHHHHHhHh
Q 011146          167 YRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       167 ~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      |.|+ |++.|..+..|+.|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            4455 555555555555555544

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.38  E-value=0.0021  Score=40.27  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=14.0

Q ss_pred             ceeec-CCCccCChhHHHHHHhHhc
Q 011146          166 EYRCD-CGTLFSRKDSFITHRAFCD  189 (492)
Q Consensus       166 p~~C~-C~k~F~~~~~L~~H~~~h~  189 (492)
                      ||.|. |++.|.....|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            35565 6666666666666665554

>smart00355 ZnF_C2H2 zinc finger

Probab=96.37  E-value=0.0021  Score=39.14  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=22.2

Q ss_pred             eecccccccccChhhHHHHHHhcC
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999874

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.25  E-value=0.0036  Score=45.05  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             hhCccccC-CCCceecccccccccChhhHHHHHHhcC
Q 011146           52 ALSPKSLM-ATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        52 ~~h~~~h~-~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ..+.+.+. .+.|..|++|+..+....+|++|+..++
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            44555554 4678999999999999999999997766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.05  E-value=0.0012  Score=76.00  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             CCCCCCCCCCChhHhhhCccc-cCCCCceecccccccccChhhHHHHHHhcC-CC--ccccc--------c-cccccCcc
Q 011146           37 KRNLPGTPDPDAEVIALSPKS-LMATNRFLCEICNKGFQRDQNLQLHRRGHN-LP--WKLKQ--------R-TNKEVRKK  103 (492)
Q Consensus        37 ~c~~cg~~~~~~~~l~~h~~~-h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~-~~--~~~~~--------~-~~~~~~~k  103 (492)
                      .|..|+..+..+..+.-|... +.-.|.|+|+.|+..|+....|..|+|.-+ ..  ..|..        + .....+.+
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            344455555555555555554 345688999999999999999999998733 11  11111        1 11224567


Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcc--cCC-----------------------------------------Cccc
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSR--KHG-----------------------------------------EKKW  140 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~--H~~-----------------------------------------ekp~  140 (492)
                      +|.|..|       ...+..+..|.+|+..  |..                                         +-+|
T Consensus       518 p~~C~~C-------~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~  590 (1406)
T KOG1146|consen  518 PYPCRAC-------NYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSW  590 (1406)
T ss_pred             cccceee-------eeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCc
Confidence            8899988       9999999999999864  210                                         1248


Q ss_pred             ccCcCccccCChHHHHHhhhh-cCC-Cceeec-CCCccCChhHHHHHHhHh
Q 011146          141 KCEKCSKKYAVQSDWKAHSKI-CGT-REYRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~~-~~~-kp~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      .|.+|++.-.....|+.|+.. +.. .|..|. |.-.+.....+..|.+.+
T Consensus       591 ~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  591 RCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             chhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            999999988888899999887 333 347777 877777777666666555

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.84  E-value=0.0048  Score=37.83  Aligned_cols=23  Identities=43%  Similarity=0.996  Sum_probs=21.2

Q ss_pred             eecccccccccChhhHHHHHHhc
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      |.|++|++.|.....|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999999765

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.69  E-value=0.0086  Score=43.17  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             CCcccccCcCccccCChHHHHHhhhh-cCCCc
Q 011146          136 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  166 (492)
Q Consensus       136 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp  166 (492)
                      .+.|-.|++|+..+....+|++|+.+ |+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            46777888888888888888888877 76665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.51  E-value=0.011  Score=58.92  Aligned_cols=118  Identities=17%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             ceeccc--ccccccChhhHHHHHHhcCCCccccccc------------------ccc----c---C-cccccCCCCCCCC
Q 011146           63 RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRT------------------NKE----V---R-KKVYICPEKSCVH  114 (492)
Q Consensus        63 ~~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~------------------~~~----~---~-~k~y~C~~C~C~~  114 (492)
                      .|.|+.  |..+-.....|+.|.+..+...-|..+.                  ..|    .   | +..-.|.+|    
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC----  226 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFC----  226 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhc----
Confidence            477874  6655555677999977655333332110                  011    0   1 112256666    


Q ss_pred             CCCCCcccChhhHHhhhcccCCCcccccCcCcc----ccCChHHHHHhhhhcCCCceeec---CC----CccCChhHHHH
Q 011146          115 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK----KYAVQSDWKAHSKICGTREYRCD---CG----TLFSRKDSFIT  183 (492)
Q Consensus       115 ~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k----~F~~~~~L~~H~~~~~~kp~~C~---C~----k~F~~~~~L~~  183 (492)
                         ...|-+-..|.+|+|..| |+-|.|+.-+.    -|..-..|.+|.+.   ..|.|.   |.    ..|.....|..
T Consensus       227 ---~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~---~hy~ct~qtc~~~k~~vf~~~~el~~  299 (493)
T COG5236         227 ---KIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRN---AHYCCTFQTCRVGKCYVFPYHTELLE  299 (493)
T ss_pred             ---cceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhc---CceEEEEEEEecCcEEEeccHHHHHH
Confidence               777777777888877644 33333333221    25566667666654   236663   53    45777777888


Q ss_pred             HHhHhcCc
Q 011146          184 HRAFCDAL  191 (492)
Q Consensus       184 H~~~h~~~  191 (492)
                      |+..-|+.
T Consensus       300 h~~~~h~~  307 (493)
T COG5236         300 HLTRFHKV  307 (493)
T ss_pred             HHHHHhhc
Confidence            87655543

>PRK04860 hypothetical protein; Provisional

Probab=95.45  E-value=0.0054  Score=56.02  Aligned_cols=27  Identities=19%  Similarity=0.580  Sum_probs=13.0

Q ss_pred             hhhHHhhhcccCCCcccccCcCccccC
Q 011146          124 LTGIKKHFSRKHGEKKWKCEKCSKKYA  150 (492)
Q Consensus       124 ~s~L~~H~~~H~~ekp~~C~~C~k~F~  150 (492)
                      ...+++|.++|+++++|.|..|+..|.
T Consensus       128 ~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        128 QLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             eCHHHHHHHHhcCCccEECCCCCceeE
Confidence            334445555555555555555544443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.22  E-value=0.017  Score=60.08  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CceecccccccccChhhHHHHHH--hcCCCcccccccccccCc--ccccCC--CCCCCCCCCCCcccChhhHHhhhcccC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTNKEVRK--KVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r--~H~~~~~~~~~~~~~~~~--k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      .++.|..|.+.|.+...|..|.+  .|.             ++  +++.|+  .|       ++.|.+...+..|..+|+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            47999999999999999999999  787             77  999999  67       999999999999999999


Q ss_pred             CCcccccCc--CccccCChHHH----HHhhh-h-cCCCceeec---CCCccCChhHHHHHHhHhcCcc
Q 011146          136 GEKKWKCEK--CSKKYAVQSDW----KAHSK-I-CGTREYRCD---CGTLFSRKDSFITHRAFCDALA  192 (492)
Q Consensus       136 ~ekp~~C~~--C~k~F~~~~~L----~~H~~-~-~~~kp~~C~---C~k~F~~~~~L~~H~~~h~~~~  192 (492)
                      +.+++.|..  |.+.+.....-    ..+.. . ...+.+.|.   |.+.+.+...+..|...|....
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFR  415 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccC
Confidence            988877744  55555444331    11111 1 344556663   6677777777777766665444

>PRK04860 hypothetical protein; Provisional

Probab=94.35  E-value=0.023  Score=51.93  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccCh
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDL  124 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~  124 (492)
                      -+|.|. |++   ....+.+|.++|.             ++++|.|..|       +..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~-------------g~~~YrC~~C-------~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVR-------------GEAVYRCRRC-------GETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhc-------------CCccEECCCC-------CceeEEe
Confidence            479998 998   7778999999998             8999999999       7776543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.13  E-value=0.011  Score=37.10  Aligned_cols=22  Identities=32%  Similarity=0.844  Sum_probs=19.1

Q ss_pred             eecccccccccChhhHHHHHHh
Q 011146           64 FLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      |.|++|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999888764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.29  E-value=0.052  Score=32.89  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=18.7

Q ss_pred             eecccccccccChhhHHHHHHhcC
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+|+.|+.... +..|..|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            79999999888 889999998864

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.20  E-value=0.043  Score=63.66  Aligned_cols=92  Identities=12%  Similarity=0.101  Sum_probs=50.0

Q ss_pred             eecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccC
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~  143 (492)
                      +.|.+|++.|.....+. |+-                -..+|.|+.|       ...|.....|..|.           .
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l~----------------~~~~~~~~~~-------~~~~~~~~~l~~~~-----------~ 1305 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLD----------------VTHRYLCRQC-------KMAFDGEAPLTAHQ-----------R 1305 (1406)
T ss_pred             chhhhccccccCcccee-ecc----------------cchhHHHHHH-------HhhhcchhHHHHHH-----------H
Confidence            66666666666655554 331                2345666666       66666666666665           1


Q ss_pred             cCccccCChHHHHHhhhhcCC-Cceeec-CCCccCChhHHHHHHhHhcCc
Q 011146          144 KCSKKYAVQSDWKAHSKICGT-REYRCD-CGTLFSRKDSFITHRAFCDAL  191 (492)
Q Consensus       144 ~C~k~F~~~~~L~~H~~~~~~-kp~~C~-C~k~F~~~~~L~~H~~~h~~~  191 (492)
                      .|-+.|.....+.-|.-.+-. +.| |. |...|+....|..||+..+..
T Consensus      1306 k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1306 KFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRSSAHR 1354 (1406)
T ss_pred             HHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHHhhhc
Confidence            222334444444444333222 334 76 777777777777777655443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.16  E-value=0.055  Score=32.99  Aligned_cols=21  Identities=19%  Similarity=0.730  Sum_probs=12.5

Q ss_pred             cccCcCccccCChHHHHHhhh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~  160 (492)
                      |.|++|++.|.....|+.|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            456666666666666666654

>smart00355 ZnF_C2H2 zinc finger

Probab=93.01  E-value=0.066  Score=32.23  Aligned_cols=20  Identities=30%  Similarity=0.753  Sum_probs=9.8

Q ss_pred             ccCcCccccCChHHHHHhhh
Q 011146          141 KCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~  160 (492)
                      +|..|++.|.....|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            44445555555545544444

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=92.73  E-value=0.097  Score=31.66  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=11.2

Q ss_pred             eeec-CCCccCChhHHHHHHhHhc
Q 011146          167 YRCD-CGTLFSRKDSFITHRAFCD  189 (492)
Q Consensus       167 ~~C~-C~k~F~~~~~L~~H~~~h~  189 (492)
                      |+|. |+.... +..|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            4555 655555 555666655544

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=92.63  E-value=0.06  Score=54.82  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=38.3

Q ss_pred             ccccCcCccccCChHHHHHhhhh-cCC-----------------------Cceeec-CC---CccCChhHHHHHHh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI-CGT-----------------------REYRCD-CG---TLFSRKDSFITHRA  186 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~-~~~-----------------------kp~~C~-C~---k~F~~~~~L~~H~~  186 (492)
                      |-.|-.|++.|..-..-..||.. ||-                       +-|.|- |.   +.|.+-...+.||.
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence            56788888888888888888876 542                       238898 98   99999999999986

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.44  E-value=0.076  Score=33.22  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=16.5

Q ss_pred             cccCcCccccCChHHHHHhhhh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6677777778777777777764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.04  E-value=0.054  Score=50.46  Aligned_cols=82  Identities=21%  Similarity=0.483  Sum_probs=66.8

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-c----------CCCceee
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTREYRC  169 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~----------~~kp~~C  169 (492)
                      +.+.|.|.+-+|     -+.|.....+..|..+-++.   .|.+|.+.|.+...|..|+.. |          |.-.|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            446688998877     89999999999998774443   699999999999999999754 3          4456999


Q ss_pred             --c-CCCccCChhHHHHHHhHhcC
Q 011146          170 --D-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       170 --~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                        + |+..|.+...-+.|+-..|.
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhcc
Confidence              5 99999999999999866554

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=91.82  E-value=0.056  Score=51.46  Aligned_cols=49  Identities=22%  Similarity=0.345  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHH-HHhcC
Q 011146           35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH-RRGHN   87 (492)
Q Consensus        35 ~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H-~r~H~   87 (492)
                      +-=|=.|.+.|.++..|..|.|.    |-|+|.||.|...+---|.+| |.+|.
T Consensus        10 kpwcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   10 KPWCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             Cceeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence            44588999999999999999865    679999999998888889999 67774

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.73  E-value=0.18  Score=50.55  Aligned_cols=78  Identities=21%  Similarity=0.373  Sum_probs=58.5

Q ss_pred             ecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc
Q 011146           65 LCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (492)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~  144 (492)
                      .|..|.+.|.....|.+|+|.-+              ++-|+|+.-+-   .-..-|.+...|..|++.-+    |.|.+
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~H--------------E~ChICD~v~p---~~~QYFK~Y~~Le~HF~~~h----y~ct~  280 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRH--------------EACHICDMVGP---IRYQYFKSYEDLEAHFRNAH----YCCTF  280 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhh--------------hhhhhhhccCc---cchhhhhCHHHHHHHhhcCc----eEEEE
Confidence            59999999999999999998764              67777776421   11345888899999998744    77744


Q ss_pred             --Cc----cccCChHHHHHhhhh-cC
Q 011146          145 --CS----KKYAVQSDWKAHSKI-CG  163 (492)
Q Consensus       145 --C~----k~F~~~~~L~~H~~~-~~  163 (492)
                        |-    ..|.....|..|+.. |+
T Consensus       281 qtc~~~k~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         281 QTCRVGKCYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             EEEecCcEEEeccHHHHHHHHHHHhh
Confidence              32    368888899999866 54

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.25  E-value=0.14  Score=33.92  Aligned_cols=23  Identities=30%  Similarity=0.837  Sum_probs=20.7

Q ss_pred             ceecccccccccChhhHHHHHHh
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58999999999999999999754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]

Probab=91.04  E-value=0.16  Score=58.05  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHhhhhhhhccHHHHHHHHHHhcCCcCCCCCC
Q 011146          335 GQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNS  374 (492)
Q Consensus       335 QQQQQQQQQQQQQq~q~qq~~al~Qq~~Qmg~t~~~~~~~  374 (492)
                      |+|+++|+|++||+..++.++++++|..+||...+++.+-
T Consensus      1430 q~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~ 1469 (1517)
T KOG1883|consen 1430 QMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPY 1469 (1517)
T ss_pred             hhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCC
Confidence            3344444444444455666678889999999888877444

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.83  E-value=0.14  Score=43.61  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccCh
Q 011146           34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRD   76 (492)
Q Consensus        34 ~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~   76 (492)
                      .||.|..||+.|.+           .++.|..|+.||..|.-.
T Consensus         8 tKR~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    8 TKRTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CcccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence            38999999999997           244789999999999876

The function of members of this family is unknown.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.62  E-value=0.18  Score=31.07  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=17.0

Q ss_pred             eecccccccccChhhHHHHHHh
Q 011146           64 FLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      ..|++||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 66778888753

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=88.64  E-value=0.42  Score=48.06  Aligned_cols=49  Identities=22%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             cccCcCccccCChHHHHHhhhh-cC---------------------------CCceeec-CCCccCChhHHHHHHhHh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI-CG---------------------------TREYRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~-~~---------------------------~kp~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      .+|-.|...+.....|..||++ |.                           .+.-.|- |...|-....|..||.-+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            4788888777777888888776 42                           0113555 889999999999998643

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=87.28  E-value=0.18  Score=48.05  Aligned_cols=44  Identities=25%  Similarity=0.442  Sum_probs=31.4

Q ss_pred             eecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhh
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF  131 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~  131 (492)
                      -.|=+|++.|....-|..|.+.                 |.|+|.+|       .|.+.+--.|..|-
T Consensus        11 pwcwycnrefddekiliqhqka-----------------khfkchic-------hkkl~sgpglsihc   54 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKA-----------------KHFKCHIC-------HKKLFSGPGLSIHC   54 (341)
T ss_pred             ceeeecccccchhhhhhhhhhh-----------------ccceeeee-------hhhhccCCCceeeh
Confidence            3688888888888888888754                 34788887       66666666666663

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=86.67  E-value=0.51  Score=29.08  Aligned_cols=19  Identities=26%  Similarity=0.676  Sum_probs=10.0

Q ss_pred             ccCcCccccCChHHHHHhhh
Q 011146          141 KCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~  160 (492)
                      .|++|++.| ..+.|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455555555 3445555544

>smart00451 ZnF_U1 U1-like zinc finger

Probab=85.71  E-value=0.55  Score=30.92  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=16.4

Q ss_pred             ccccCcCccccCChHHHHHhhhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=85.07  E-value=0.57  Score=40.68  Aligned_cols=36  Identities=17%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHH
Q 011146           34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQ   80 (492)
Q Consensus        34 ~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~   80 (492)
                      .||.|..||+.|.+           .++.|..|+.||..|.....++
T Consensus         8 tKr~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~~~~~   43 (129)
T TIGR02300         8 TKRICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPEEALK   43 (129)
T ss_pred             ccccCCCcCccccc-----------cCCCCccCCCcCCccCcchhhc
Confidence            38999999999997           3447899999999987664433

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=83.12  E-value=1.7  Score=43.81  Aligned_cols=26  Identities=12%  Similarity=0.341  Sum_probs=21.3

Q ss_pred             eeec-CCCccCChhHHHHHHhHhcCcc
Q 011146          167 YRCD-CGTLFSRKDSFITHRAFCDALA  192 (492)
Q Consensus       167 ~~C~-C~k~F~~~~~L~~H~~~h~~~~  192 (492)
                      ..|- |...+-....|.+||+..|...
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~D  306 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFD  306 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhh
Confidence            4898 9988888899999999877543

>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]

Probab=82.70  E-value=0.6  Score=54.33  Aligned_cols=13  Identities=69%  Similarity=0.882  Sum_probs=5.1

Q ss_pred             CCCcchhhHHHHH
Q 011146          329 YPSNQSGQQQQQQ  341 (492)
Q Consensus       329 ~qqQQQQQQQQQQ  341 (492)
                      |++||||||||||
T Consensus       322 ~~~~~Q~q~qqq~  334 (1973)
T KOG4407|consen  322 YPQQQQQQQQQQQ  334 (1973)
T ss_pred             chhhhhhhhhhhc
Confidence            3344444333333

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=82.00  E-value=0.93  Score=43.88  Aligned_cols=49  Identities=22%  Similarity=0.556  Sum_probs=35.6

Q ss_pred             cccCcCccccCChHHHHHhhhhcCCCceeec-CCCccCChhHHHHHHhHhcC
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      |.|.+||....- ..+.+|+..+...-|.|- |++.|-+ ..+..|...-..
T Consensus         4 FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kCITE   53 (276)
T KOG2186|consen    4 FTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKCITE   53 (276)
T ss_pred             Eehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhhhhcch
Confidence            678888876553 466678877555788886 9988877 777888765543

>KOG4377 consensus Zn-finger protein [General function prediction only]

Probab=81.94  E-value=1.3  Score=45.58  Aligned_cols=121  Identities=14%  Similarity=0.288  Sum_probs=69.2

Q ss_pred             Cceec--ccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC--
Q 011146           62 NRFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE--  137 (492)
Q Consensus        62 k~~~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e--  137 (492)
                      .-|.|  +.|+..|-.+....+|..+|.+...... ..++.-...|.|-.-+|     .+   +-+....|-..|+..  
T Consensus       270 Ehyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~-dgf~rfs~syhC~~~~C-----~k---sTsdV~~h~nFht~~~n  340 (480)
T KOG4377|consen  270 EHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLI-DGFHRFSNSYHCTGQIC-----EK---STSDVLLHDNFHTDKRN  340 (480)
T ss_pred             hhhcccCccccccccchhhhHHHHHHHhhcccccc-cchhhcCccchhhhccc-----Cc---ccccccccCcccccccc
Confidence            34778  4699988889999999999862111100 00011112245544333     66   334455566656431  


Q ss_pred             -----cccccCcCc--cccCChHHHHHhhhh-cC------------------------CCceeec---CCCccCChhHHH
Q 011146          138 -----KKWKCEKCS--KKYAVQSDWKAHSKI-CG------------------------TREYRCD---CGTLFSRKDSFI  182 (492)
Q Consensus       138 -----kp~~C~~C~--k~F~~~~~L~~H~~~-~~------------------------~kp~~C~---C~k~F~~~~~L~  182 (492)
                           .-|.|.-|+  ..|.....-..|.+- .+                        -..|.|.   |+.+|...+.+.
T Consensus       341 ~GfrrthfhC~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~  420 (480)
T KOG4377|consen  341 NGFRRTHFHCQRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMA  420 (480)
T ss_pred             CceecceeEEeccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhh
Confidence                 236676655  445433333333221 00                        0127884   999999999999


Q ss_pred             HHHhHhcCc
Q 011146          183 THRAFCDAL  191 (492)
Q Consensus       183 ~H~~~h~~~  191 (492)
                      .|.|+|.+.
T Consensus       421 shkrkheRq  429 (480)
T KOG4377|consen  421 SHKRKHERQ  429 (480)
T ss_pred             hhhhhhhhh
Confidence            999999865

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=81.44  E-value=0.65  Score=30.61  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=17.7

Q ss_pred             CCCCCCCCCCCCChhHhhhCccccCCCCceecccccc
Q 011146           35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNK   71 (492)
Q Consensus        35 ~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk   71 (492)
                      .|+|.+||-.+....            .++.|++||.
T Consensus         1 ~~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           1 KYVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             CEECCCCCCEECCCc------------CCCcCcCCCC
Confidence            377888887654422            6788888876

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]

Probab=81.14  E-value=1  Score=48.75  Aligned_cols=29  Identities=17%  Similarity=0.331  Sum_probs=24.9

Q ss_pred             CCCCceecccccccccChhhHHHHHHhcC
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      -..++-.|..||++|.+......||-.|.
T Consensus       414 y~~~pnqC~~CG~R~~~~ee~sk~md~H~  442 (579)
T KOG2071|consen  414 YKDSPNQCKSCGLRFDDSEERSKHMDIHD  442 (579)
T ss_pred             ccCCcchhcccccccccchhhhhHhhhhh
Confidence            45667899999999999999888888885

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=80.96  E-value=2.4  Score=36.02  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=22.2

Q ss_pred             eee----c-CCCccCChhHHHHHHhHhcC
Q 011146          167 YRC----D-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       167 ~~C----~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      |.|    . |++.+.+...+.+|.+.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    8 99999999999999998874

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.07  E-value=0.66  Score=50.23  Aligned_cols=20  Identities=55%  Similarity=0.283  Sum_probs=8.4

Q ss_pred             hhhHHHHHHHHhhhhhhhcc
Q 011146          334 SGQQQQQQQQQQQQGLAHMS  353 (492)
Q Consensus       334 QQQQQQQQQQQQQQq~q~qq  353 (492)
                      |||||||||||+-+|.+..+
T Consensus        73 ~~~~~~~~~~~~~~P~~~~~   92 (1179)
T KOG3648|consen   73 QQQQQQQQQQQQLQPPQPPF   92 (1179)
T ss_pred             HHHHHHHHHHHhhCCCCCCc
Confidence            44444444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-05
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	1e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	6e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 56.4 bits (137), Expect = 4e-10
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 64  FLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL 121
           F+C    CNK + +  +LQ+H R H         T +    K Y C  K C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH---------TGE----KPYQCDFKDC-----ERRF 48

Query: 122 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFS 176
                +K+H  R+H G K ++C+ C +K++     K H++   G + + C    C   F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 177 RKDSFITH 184
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHS 159
           + ++C    C     ++    L+ ++ H SRKH GEK ++C+   C ++++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 160 KI-CGTREYRCD-CGTLFSRKDSFITHR 185
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
              + C++ F   + L  H           +  + E  +K ++C    C      R    
Sbjct: 4   CRWDGCSQEFDSQEQLVHHIN--------SEHIHGE--RKEFVCHWGGCSRE--LRPFKA 51

Query: 124 LTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFS 176
              +  H  R+H GEK  KC  E C K Y+   + K H +   G + Y C    C   FS
Sbjct: 52  QYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS 110

Query: 177 RKDSFITH 184
                  H
Sbjct: 111 NASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 21/96 (21%)

Query: 69  CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK 128
           C K + R +NL+ H R H         T     +K Y+C  + C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH---------TG----EKPYMCEHEGC-----SKAFSNASDRA 116

Query: 129 KHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHSKI 161
           KH +R H  EK + C+   C+K+Y   S  + H K 
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 49.8 bits (120), Expect = 9e-08
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 159
           +  +   CP K C     ++   D + ++KH    HG +   C +C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 160 KI-CGTREYRC---DCGTLFSRKDSFITH 184
            +  G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 29/126 (23%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
            + C K F+ +  ++ H   H                +V++C E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 126 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFSRK 178
            +K+H    H GEK ++C  E C K++++  + + H +I  G R Y C    C   F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 179 DSFITH 184
            +  +H
Sbjct: 108 TNLKSH 113

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 30/126 (23%), Positives = 37/126 (29%), Gaps = 26/126 (20%)

Query: 67  EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTG 126
           E C KGF    +L  H   H               +K + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGC-----DLRFTTKAN 89

Query: 127 IKKHFSRKHGEKKW--KC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFSRK 178
           +KKHF+R H  K     C  E C K +   +  K H         Y C    C   FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 179 DSFITH 184
                H
Sbjct: 150 SRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 32/134 (23%)

Query: 63  RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRA 120
           R++C    C   + ++  LQ H   H         T     +K + C E+ C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH---------TG----EKPFPCKEEGC-----EKG 53

Query: 121 LGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKICGTRE----YRC---D 170
              L  + +H S  H GEK + C+   C  ++  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 171 CGTLFSRKDSFITH 184
           CG  F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
           + Y CP +SC      R       + +H  R H G+K ++C  C + ++       H + 
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 162 -CGTREYRCD-CGTLFSRKDSFITHR 185
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 69  CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK 128
           C++ F +  +L  H R H         T +    K + C    C      R       + 
Sbjct: 12  CDRRFSQSGSLTRHIRIH---------TGQ----KPFQCRI--C-----MRNFSRSDHLT 51

Query: 129 KHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
            H  R H GEK + C+ C +K+A   + K H+KI
Sbjct: 52  TH-IRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
           F C IC + F R  +L  H R H         T     +K + C    C      R    
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH---------TG----EKPFACDI--C-----GRKFAR 43

Query: 124 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH 158
               K+H            +K  +  +     +  
Sbjct: 44  SDERKRH-RDIQHILPILEDKVEELLSKNYHLENE 77

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKIC---GTREYRC-DCGTLFSRKDSFITHR 185
               GE  ++C+ CS+ Y   S++  H         + Y C  C   F+RKD+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
            E C K F++   L++H+  H         T     +  Y CP + C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH---------TQ----QLPYECPHEGC-----DKRFSLPS 47

Query: 126 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSK 160
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSK 160
           +Y+C  ++C      +A      +K H    H  +  ++C  E C K++++ S  K H K
Sbjct: 1   MYVCHFENC-----GKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54

Query: 161 I-CGTREYRCD-CGTLFSRKDSFITHR 185
           +  G    + D C  +      ++ H 
Sbjct: 55  VHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 128 KKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE----YRCD-CGTLFSRKDSF 181
                R H GEK ++C  C  ++      K H       E    + C  C T+ +RK   
Sbjct: 4   GSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDL 61

Query: 182 ITH 184
             H
Sbjct: 62  GVH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 23/76 (30%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C IC+  F +   +++H               +      + CP                D
Sbjct: 18  CYICHARFTQSGTMKMHILQK---------HTEN--VAKFHCPHCDTVIARK------SD 60

Query: 124 LTGIKKHFSRKH-GEK 138
           L     H  ++H    
Sbjct: 61  L---GVHLRKQHSYSG 73

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRA 186
                    KC +CS   + ++  + H +I C  R ++C+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 136 GEKKWKCEKCSKKYAVQSDWKAHSKI----CGTREYRCD-CGTLFSRKDSFITHR 185
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 45/98 (45%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 124 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI 161
                   +      ++ CE C K++       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 94  QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYA 150
                  +++++ C    C     ++     + +K H  R H GEK +KC  E C  ++A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 151 VQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHR 185
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 64  FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL 121
             C+   C K + +  +L+ H R H         T +    K Y C  + C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTH---------TGE----KPYKCTWEGC-----DWRF 57

Query: 122 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPS-RALG 122
              + C++ F     L  H                   +  ++C  + C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 123 DLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLF 175
            L     H  R H GEK + C    C K +A   + K H +   G + ++C    C   F
Sbjct: 77  KL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 176 SRKDSFITH 184
           +       H
Sbjct: 133 ANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
           C    K F+    L  H R H         T +    K + CP   C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH---------TGE----KPFPCPFPGC-----GKIFARSE 106

Query: 126 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRCD 170
            +K H  R H GEK +KC  E C +++A  SD K H  +    +     
Sbjct: 107 NLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.1 bits (108), Expect = 9e-06
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 30/125 (24%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C  C K F R  +L  H+R H         T     +K Y CPE  KS           D
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH---------T----GEKPYKCPECGKSFSDK------KD 64

Query: 124 LTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YRC-DCGTLFSRKD 179
           LT   +H  R H GEK +KC +C K ++ +++ +AH +   T E  Y C +CG  FS+  
Sbjct: 65  LT---RH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLA 119

Query: 180 SFITH 184
               H
Sbjct: 120 HLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 30/126 (23%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C  C K F   ++L  H+R H               +K Y CPE  KS           +
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPECGKSFSQR------AN 92

Query: 124 LTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YRC-DCGTLFSRKD 179
           L     H  R H GEK + C +C K ++  +  +AH +   T E  Y+C +CG  FSR+D
Sbjct: 93  LR---AH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSRED 147

Query: 180 SFITHR 185
           +  TH+
Sbjct: 148 NLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 28/124 (22%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C  C K F +  NL+ H+R H               +K Y CPE  KS            
Sbjct: 80  CPECGKSFSQRANLRAHQRTHT-------------GEKPYACPECGKSFSQL------AH 120

Query: 124 LTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDS 180
           L     H  R H GEK +KC +C K ++ + +   H +   G + Y+C +CG  FSR+D+
Sbjct: 121 LR---AH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA 176

Query: 181 FITH 184
              H
Sbjct: 177 LNVH 180

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 45/134 (33%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
           C  C+K F     L++H R H               +K + CP+  C         G   
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPK--C---------G--- 42

Query: 126 GIKKHFSRK-----H--------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-D 170
              K + RK     H         E+ + C  C + +  + + + H     G   Y+C  
Sbjct: 43  ---KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99

Query: 171 CGTLFSRKDSFITH 184
           C   F +K    +H
Sbjct: 100 CSQQFMQKKDLQSH 113

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITHR 185
                +K +KC++C   +  + +  +H  +  G + YRC  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 126 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFI 182
           G     S  H GEK + C +C K ++  S    H ++  G + Y+C +CG  FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 183 THR 185
            H+
Sbjct: 60  NHQ 62

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 129 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFS 176
           K FSRK         H G K +KC+ C    A  S    H +I    R ++C  C     
Sbjct: 16  KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75

Query: 177 RKDSFITHR 185
                  H 
Sbjct: 76  NSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 136 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITHR 185
                KCE C K ++ +   K H +   G + Y+C  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 20/97 (20%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
              C K + +  +L+ H R H         T +    K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH---------TGE----KPYHCDWDGC-----GWKFARSD 51

Query: 126 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
            + +H+ RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 133 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD---CGTLFSRKDSFITHR 185
           ++          C K Y   S  KAH +   G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 124 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFI 182
            +G   H   +   +   C+ C  +       K H   CG R   C  CG     KD   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 183 THRAFCD 189
           TH   C 
Sbjct: 60  THPEVCG 66

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITH 184
            +    +++KC++C K ++  SD   H +   G + Y+C +CG  F ++   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITH 184
             H   + + C+ C K++  +SD K H+ I  G + ++C  CG  FS+  + ITH
Sbjct: 22  LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 129 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFS 176
           +HF++          H  E+ + C+ C K +  Q   + H  I    + ++C +CG  F 
Sbjct: 25  RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84

Query: 177 RKDSFITHR 185
           +  +   H+
Sbjct: 85  QSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITHR 185
                +K++ C+ C + +    +   H +     R Y C  C   F R+D    HR
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-----CGTREYRC-DCGTLFSRKDSFITH 184
           R H GEK + C  C K +  +     H K           + C  CG  F+R+++   H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.83
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.68
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.67
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.58
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.58
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.57
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.54
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.53
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.52
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.51
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.5
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.48
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.48
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.46
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.46
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.45
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.44
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.42
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.42
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.42
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.4
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.38
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.36
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.36
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.36
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.35
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.34
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.34
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.33
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.31
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.31
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.3
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.29
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.29
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.29
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.27
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.22
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.21
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.17
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.16
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.14
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.14
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.11
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.1
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.09
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.09
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.03
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.03
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.98
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.98
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.96
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.96
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.95
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.94
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.94
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.94
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.93
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.92
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.92
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.92
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.92
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.92
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.92
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.91
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.89
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.88
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.87
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.87
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.87
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.87
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.87
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.86
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.86
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.86
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.83
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.83
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.83
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.82
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.82
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.81
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.81
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.8
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.8
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.8
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.78
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.77
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.76
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.75
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.74
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.74
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.66
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.63
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.59
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.58
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.52
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.46
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.42
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.4
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.38
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.37
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.35
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.32
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.25
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.21
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.2
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.19
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.14
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.13
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.08
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.06
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.02
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.01
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.01
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.0
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.99
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.97
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.96
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.96
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.94
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.94
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.93
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.91
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.1
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.86
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.86
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.83
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.81
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.8
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.0
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.99
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.79
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.77
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.75
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.71
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.68
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.64
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.64
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.64
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.62
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.6
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.6
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.59
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.58
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.54
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.51
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.51
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.5
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.64
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.61
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.45
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.4
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.39
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.34
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.28
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.2
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.99
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.89
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.82
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.47
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.43
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.99
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.95
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.16
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.89
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.36
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	82.18
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.26

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=6.4e-32  Score=251.73  Aligned_cols=170  Identities=24%  Similarity=0.508  Sum_probs=142.9

Q ss_pred             CCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHH
Q 011146            3 SQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH   82 (492)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H   82 (492)
                      +++++|.|+.|++.|.....+..|...+.++++|+|.+|++.|.....|..|++.|.++++|.|++|++.|.+...|..|
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   96 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH   96 (190)
T ss_dssp             --------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHH
Confidence            35678999999999998888888888888888999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-
Q 011146           83 RRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-  161 (492)
Q Consensus        83 ~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-  161 (492)
                      ++.|.             ++++|.|++|       ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ 
T Consensus        97 ~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  156 (190)
T 2i13_A           97 QRTHT-------------GEKPYACPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH  156 (190)
T ss_dssp             HHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             HHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            99998             8899999999       99999999999999999999999999999999999999999999 


Q ss_pred             cCCCceeec-CCCccCChhHHHHHHhHhcCcc
Q 011146          162 CGTREYRCD-CGTLFSRKDSFITHRAFCDALA  192 (492)
Q Consensus       162 ~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~  192 (492)
                      +++++|.|+ |++.|.++..|..|+++|++..
T Consensus       157 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             HCCCCEECTTTCCEESSHHHHHHHHTTC----
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            899999999 9999999999999999998754

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=4.5e-28  Score=225.66  Aligned_cols=163  Identities=23%  Similarity=0.442  Sum_probs=132.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCc
Q 011146           23 SNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRK  102 (492)
Q Consensus        23 ~~~~~~~~~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~  102 (492)
                      +..+...+.++++|+|.+|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.|.             ++
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~   75 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT-------------GE   75 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH-------------CC
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC-------------CC
Confidence            44455566778899999999999999999999999999999999999999999999999999998             88


Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhH
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDS  180 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~  180 (492)
                      ++|.|++|       ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.++..
T Consensus        76 ~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  148 (190)
T 2i13_A           76 KPYKCPEC-------GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN  148 (190)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCccCccc-------CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHH
Confidence            99999999       99999999999999999999999999999999999999999999 899999999 9999999999


Q ss_pred             HHHHHhHhcCcccccccccCCCCCC
Q 011146          181 FITHRAFCDALAEESARFTTISSTN  205 (492)
Q Consensus       181 L~~H~~~h~~~~~~~~~~~~~s~~~  205 (492)
                      |..|+++|++.....+..+......
T Consensus       149 L~~H~~~H~~~~~~~C~~C~~~f~~  173 (190)
T 2i13_A          149 LHTHQRTHTGEKPYKCPECGKSFSR  173 (190)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             HHHHHHhcCCCCCeECCCCCCccCC
Confidence            9999999999888888888776543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=8.1e-27  Score=217.13  Aligned_cols=166  Identities=17%  Similarity=0.296  Sum_probs=146.0

Q ss_pred             CCCCCCC--CCCCCCCcCCCCCCCCCCCCCCCCCCCC--CCCCCCCCChhHhhhCccccCCCCceecc--cccccccChh
Q 011146            4 QDHGLSV--PSTLKGFVQEPNSNPNPNPSSNQLKRKR--NLPGTPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQ   77 (492)
Q Consensus         4 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~cg~~~~~~~~l~~h~~~h~~~k~~~C~--~Cgk~F~~~~   77 (492)
                      .+++|.|  +.|++.|.....+..|...+.++++|+|  .+|++.|.....|..|++.|.++++|.|+  +|++.|.+..
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHH
Confidence            5678999  6899999988888878777777889999  88999999999999999999999999999  8999999999


Q ss_pred             hHHHHH-HhcCCCcccccccccccCcccccC--CCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc--CccccCCh
Q 011146           78 NLQLHR-RGHNLPWKLKQRTNKEVRKKVYIC--PEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQ  152 (492)
Q Consensus        78 ~L~~H~-r~H~~~~~~~~~~~~~~~~k~y~C--~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~--C~k~F~~~  152 (492)
                      .|..|+ +.|.            .++++|.|  ++|       ++.|.....|..|+++|+++++|.|++  |++.|...
T Consensus        89 ~l~~H~~~~h~------------~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~  149 (190)
T 1tf6_A           89 NMKKHFNRFHN------------IKICVYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP  149 (190)
T ss_dssp             HHHHHHHTTSS------------TTTSCCEECSSSS-------CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSH
T ss_pred             HHHHHHHHhcC------------CCcceeeCCCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCH
Confidence            999998 6663            26789999  778       999999999999999999999999987  99999999


Q ss_pred             HHHHHhhhhcCCCceeec----CCCccCChhHHHHHHhHhcC
Q 011146          153 SDWKAHSKICGTREYRCD----CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       153 ~~L~~H~~~~~~kp~~C~----C~k~F~~~~~L~~H~~~h~~  190 (492)
                      ..|..|+++|..  |.|.    |++.|.....|..|+++|++
T Consensus       150 ~~L~~H~~~H~~--~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          150 SRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             HHHHHHHTSSCS--CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHhCC--CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            999999998433  7772    99999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=8.7e-25  Score=196.19  Aligned_cols=138  Identities=21%  Similarity=0.365  Sum_probs=128.3

Q ss_pred             CCCCCCCCCCCCCCChhHhhhCcc---ccCCCCceecccc-----cccccChhhHHHHHHhcCCCcccccccccccCccc
Q 011146           33 QLKRKRNLPGTPDPDAEVIALSPK---SLMATNRFLCEIC-----NKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKV  104 (492)
Q Consensus        33 ~~~~~c~~cg~~~~~~~~l~~h~~---~h~~~k~~~C~~C-----gk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~  104 (492)
                      +.+++|..|++.|.+...|..|++   .|.++++|.|++|     ++.|.+...|..|++.|.             ++++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~   67 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKP   67 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCC
Confidence            357999999999999999999998   7889999998753     499999999999999998             8899


Q ss_pred             ccCCC--CCCCCCCCCCcccChhhHHhhhcccCCCcccccCc--CccccCChHHHHHhh-hh-cCCCceeec---CCCcc
Q 011146          105 YICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHS-KI-CGTREYRCD---CGTLF  175 (492)
Q Consensus       105 y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~-~~-~~~kp~~C~---C~k~F  175 (492)
                      |.|++  |       ++.|.....|..|+++|+++++|.|++  |++.|.....|..|+ ++ .++++|.|+   |++.|
T Consensus        68 ~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           68 HKCTFEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             CCCCSTTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             ccCCCCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            99986  7       999999999999999999999999998  999999999999999 66 788999993   99999


Q ss_pred             CChhHHHHHHhHhcC
Q 011146          176 SRKDSFITHRAFCDA  190 (492)
Q Consensus       176 ~~~~~L~~H~~~h~~  190 (492)
                      .++..|..|++.|++
T Consensus       141 ~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          141 TDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHhhcC
Confidence            999999999999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=2.3e-24  Score=200.55  Aligned_cols=145  Identities=20%  Similarity=0.291  Sum_probs=133.3

Q ss_pred             CCCCCCCC--CCCCCCCCChhHhhhCccccCCCCceec--ccccccccChhhHHHHHHhcCCCcccccccccccCccccc
Q 011146           31 SNQLKRKR--NLPGTPDPDAEVIALSPKSLMATNRFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (492)
Q Consensus        31 ~~~~~~~c--~~cg~~~~~~~~l~~h~~~h~~~k~~~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (492)
                      ...++|+|  ..||+.|.....|..|++.|.++++|.|  ++|++.|.+...|..|+++|.             ++++|.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~   74 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNFT   74 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCEE
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCcee
Confidence            45678999  7999999999999999999999999999  899999999999999999998             889999


Q ss_pred             CC--CCCCCCCCCCCcccChhhHHhhh-ccc-CCCccccc--CcCccccCChHHHHHhhhh-cCCCceee--c-CCCccC
Q 011146          107 CP--EKSCVHHDPSRALGDLTGIKKHF-SRK-HGEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC--D-CGTLFS  176 (492)
Q Consensus       107 C~--~C~C~~~~c~k~f~~~s~L~~H~-~~H-~~ekp~~C--~~C~k~F~~~~~L~~H~~~-~~~kp~~C--~-C~k~F~  176 (492)
                      |+  .|       ++.|.....|..|+ +.| .++++|.|  ++|++.|.....|..|+++ +++++|.|  + |++.|.
T Consensus        75 C~~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~  147 (190)
T 1tf6_A           75 CDSDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS  147 (190)
T ss_dssp             CCSSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCS
T ss_pred             CCCCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhc
Confidence            99  77       99999999999999 667 47899999  8999999999999999999 88999999  5 999999


Q ss_pred             ChhHHHHHHhHhcCcccccccc
Q 011146          177 RKDSFITHRAFCDALAEESARF  198 (492)
Q Consensus       177 ~~~~L~~H~~~h~~~~~~~~~~  198 (492)
                      ++..|..|+++|++   ..+..
T Consensus       148 ~~~~L~~H~~~H~~---~~C~~  166 (190)
T 1tf6_A          148 LPSRLKRHEKVHAG---YPCKK  166 (190)
T ss_dssp             SHHHHHHHHTSSCS---CCCCS
T ss_pred             CHHHHHHHHHHhCC---CcCCC
Confidence            99999999999987   44444

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=2.4e-23  Score=183.73  Aligned_cols=110  Identities=20%  Similarity=0.322  Sum_probs=101.1

Q ss_pred             hhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhh
Q 011146           51 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKH  130 (492)
Q Consensus        51 l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H  130 (492)
                      +.-|.++|.|+++|+|++|++.|.+...|..|+++|.             ++++|.|++|       ++.|.....|..|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H   69 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKH   69 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHH
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------Ceecccccchhhh
Confidence            4456677899999999999999999999999999998             8999999999       9999999999999


Q ss_pred             hcccCCCcccccCcCccccCChHHHHHhhhh-cCC------Cceeec-CCCccCChhH
Q 011146          131 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT------REYRCD-CGTLFSRKDS  180 (492)
Q Consensus       131 ~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~------kp~~C~-C~k~F~~~~~  180 (492)
                      +++|++++||.|++|++.|.....|..|+++ +++      ++|+|. |++.|.+...
T Consensus        70 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             HHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             ccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            9999999999999999999999999999998 765      469999 9999986544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.8e-22  Score=173.78  Aligned_cols=112  Identities=21%  Similarity=0.494  Sum_probs=93.4

Q ss_pred             CCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcc---cC
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR---KH  135 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~---H~  135 (492)
                      +++++|+|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            45678888888888888888888888887             7788888888       8888888888888875   56


Q ss_pred             CCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHhHhcC
Q 011146          136 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       136 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      ++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|..|++.+|.
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            78888888888888888888888888 778888888 88888888888888876543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=1.1e-22  Score=173.98  Aligned_cols=110  Identities=28%  Similarity=0.682  Sum_probs=100.5

Q ss_pred             CCCCceeccc--ccccccChhhHHHHHHhcCCCcccccccccccCcccccCC--CCCCCCCCCCCcccChhhHHhhhccc
Q 011146           59 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus        59 ~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      +++++|.|++  |++.|.+...|..|++.|.             ++++|.|+  .|       ++.|.....|..|+++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            4678899987  9999999999999999997             78899998  57       99999999999999999


Q ss_pred             CCCcccccCcCccccCChHHHHHhhhh-cCCCceee--c-CCCccCChhHHHHHHhHh
Q 011146          135 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC--D-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       135 ~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C--~-C~k~F~~~~~L~~H~~~h  188 (492)
                      +++++|.|++|++.|.....|..|+++ +++++|.|  + |++.|.++..|..|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 88899999  7 999999999999999876

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=5.3e-23  Score=184.50  Aligned_cols=137  Identities=20%  Similarity=0.339  Sum_probs=126.1

Q ss_pred             CCCCCCCCCCCCCcCCCCCCCCCC---CCCCCCCCCCCC-----CCCCCCChhHhhhCccccCCCCceeccc--cccccc
Q 011146            5 DHGLSVPSTLKGFVQEPNSNPNPN---PSSNQLKRKRNL-----PGTPDPDAEVIALSPKSLMATNRFLCEI--CNKGFQ   74 (492)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~c~~-----cg~~~~~~~~l~~h~~~h~~~k~~~C~~--Cgk~F~   74 (492)
                      |.+|.|+.|++.|.....+..|..   .+.++++|.|.+     |++.|.....|..|++.|.++++|.|++  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            457999999999999888888865   567778888874     3499999999999999999999999986  999999


Q ss_pred             ChhhHHHHHHhcCCCcccccccccccCcccccCCC--CCCCCCCCCCcccChhhHHhhh-cccCCCcccccCc--Ccccc
Q 011146           75 RDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHF-SRKHGEKKWKCEK--CSKKY  149 (492)
Q Consensus        75 ~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~-~~H~~ekp~~C~~--C~k~F  149 (492)
                      +...|..|++.|.             ++++|.|++  |       ++.|.....|..|+ +.|.++++|.|++  |++.|
T Consensus        81 ~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           81 RLENLKTHLRSHT-------------GEKPYMCEHEGC-------SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             SHHHHHHHHHHTT-------------TCCCEECCSTTC-------CCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             CHHHHHHHHHHcC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            9999999999998             899999998  7       99999999999999 8899999999998  99999


Q ss_pred             CChHHHHHhhhh
Q 011146          150 AVQSDWKAHSKI  161 (492)
Q Consensus       150 ~~~~~L~~H~~~  161 (492)
                      ..+..|..|+++
T Consensus       141 ~~~~~L~~H~~~  152 (155)
T 2gli_A          141 TDPSSLRKHVKT  152 (155)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            999999999988

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=3.5e-22  Score=179.40  Aligned_cols=121  Identities=22%  Similarity=0.322  Sum_probs=104.6

Q ss_pred             CCCCCCCCCCCCCCCCCChhHhhhCccc-cCCCCc--------eecccccccccChhhHHHHHHhcCCCccccccccccc
Q 011146           30 SSNQLKRKRNLPGTPDPDAEVIALSPKS-LMATNR--------FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV  100 (492)
Q Consensus        30 ~~~~~~~~c~~cg~~~~~~~~l~~h~~~-h~~~k~--------~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~  100 (492)
                      ...++.+.|.+|++.|.....|..|++. |.++++        |.|++|++.|.....|..|+++|.             
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------   86 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------   86 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------
Confidence            3456788999999999999999999887 666554        789999999999999999998887             


Q ss_pred             CcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCCcccccCc--CccccCChHHHHHhhhh-cCCCceeec
Q 011146          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       101 ~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      ++++|.|++  |       ++.|.....|.+|+++|+++++|.|.+  |++.|.....|..|+++ +++++|.|.
T Consensus        87 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           87 GEKPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCCSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            788999987  7       999999999999999999999999987  99999999999999988 788888873

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=5.9e-22  Score=170.54  Aligned_cols=116  Identities=17%  Similarity=0.300  Sum_probs=107.5

Q ss_pred             CCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        31 ~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .++++|+|.+|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|.          .+.++++|.|++|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~----------~~~~~~~~~C~~C   72 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC----------MNRSEQVFTCSVC   72 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC----------CCSCCCCEECSSS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh----------cCCCCCCeECCCC
Confidence            456789999999999999999999999999999999999999999999999998752          1137899999999


Q ss_pred             CCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cC
Q 011146          111 SCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (492)
Q Consensus       111 ~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (492)
                             ++.|.....|..|+++|+++++|.|++|++.|..+..|..|++. |.
T Consensus        73 -------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           73 -------QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             -------CCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             -------CCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence                   99999999999999999999999999999999999999999986 54

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=1.4e-21  Score=168.72  Aligned_cols=112  Identities=25%  Similarity=0.562  Sum_probs=95.2

Q ss_pred             CCCceecc--cccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146           60 ATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus        60 ~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++++|.|+  .|++.|.+...|..|++.|              ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCC
Confidence            46789998  8999999999999999888              4678999998       99999999999999999999


Q ss_pred             cccccCc--CccccCChHHHHHhhhh-cCCCceee--c-CCCccCChhHHHHHHhHhcCcc
Q 011146          138 KKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRC--D-CGTLFSRKDSFITHRAFCDALA  192 (492)
Q Consensus       138 kp~~C~~--C~k~F~~~~~L~~H~~~-~~~kp~~C--~-C~k~F~~~~~L~~H~~~h~~~~  192 (492)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.++..|..|+++|++..
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            9999976  99999999999999988 78899999  5 9999999999999999887653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=1.2e-21  Score=167.56  Aligned_cols=111  Identities=21%  Similarity=0.406  Sum_probs=106.2

Q ss_pred             CCCCCCCCCC--CCCCCCChhHhhhCccccCCCCceecc--cccccccChhhHHHHHHhcCCCcccccccccccCccccc
Q 011146           31 SNQLKRKRNL--PGTPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (492)
Q Consensus        31 ~~~~~~~c~~--cg~~~~~~~~l~~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (492)
                      .++++|+|.+  |++.|.....|..|++.|.++++|.|+  .|++.|.+...|..|++.|.             ++++|.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~   68 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-------------GVKPFQ   68 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------CCCCEE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcC-------------CCCCcc
Confidence            3567899997  999999999999999999999999999  79999999999999999998             899999


Q ss_pred             CCCCCCCCCCCCCcccChhhHHhhhcccCCCccccc--CcCccccCChHHHHHhhhh
Q 011146          107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC--EKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       107 C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C--~~C~k~F~~~~~L~~H~~~  161 (492)
                      |++|       ++.|.....|..|+++|+++++|.|  ++|++.|.....|..|+++
T Consensus        69 C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           69 CKTC-------QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             CTTT-------CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             CCcc-------CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            9999       9999999999999999999999999  8999999999999999975

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.83  E-value=1.3e-21  Score=168.78  Aligned_cols=114  Identities=17%  Similarity=0.282  Sum_probs=102.8

Q ss_pred             CCCCCCC--CCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC-
Q 011146           33 QLKRKRN--LPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE-  109 (492)
Q Consensus        33 ~~~~~c~--~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~-  109 (492)
                      +++|+|.  .|++.|.+...|..|++.| ++++|.|++|++.|.+...|..|++.|.             ++++|.|++ 
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~   68 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-------------GEKPFQCTFE   68 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS-------------CCCCEECCST
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCeeCCCC
Confidence            5689999  9999999999999999999 8899999999999999999999999998             899999986 


Q ss_pred             -CCCCCCCCCCcccChhhHHhhhcccCCCcccccC--cCccccCChHHHHHhhhh-cCCCce
Q 011146          110 -KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREY  167 (492)
Q Consensus       110 -C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kp~  167 (492)
                       |       ++.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++ ++++++
T Consensus        69 ~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           69 GC-------GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TC-------CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CC-------cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence             7       99999999999999999999999995  599999999999999999 777765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=7.9e-21  Score=170.53  Aligned_cols=117  Identities=20%  Similarity=0.368  Sum_probs=106.4

Q ss_pred             CCCCceecccccccccChhhHHHHHHh-cCCCcccccccccccCcc--------cccCCCCCCCCCCCCCcccChhhHHh
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKEVRKK--------VYICPEKSCVHHDPSRALGDLTGIKK  129 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k--------~y~C~~C~C~~~~c~k~f~~~s~L~~  129 (492)
                      .+.++|.|++|++.|.+...|..|++. |.             +++        .|.|++|       ++.|.....|..
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~~~~~~~~~C~~C-------~~~f~~~~~l~~   80 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVN   80 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTS-------------CCTTCSSCCCCBTTCTTS-------SCCCSSHHHHHH
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcC-------------CCcccCCccccccCCCCc-------ccccCCHHHHHH
Confidence            356789999999999999999999998 64             333        3889998       999999999999


Q ss_pred             hhcccCCCcccccCc--CccccCChHHHHHhhhh-cCCCceeec---CCCccCChhHHHHHHhHhcCccccc
Q 011146          130 HFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRCD---CGTLFSRKDSFITHRAFCDALAEES  195 (492)
Q Consensus       130 H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~~~kp~~C~---C~k~F~~~~~L~~H~~~h~~~~~~~  195 (492)
                      |+++|+++++|.|.+  |++.|.....|..|+++ +++++|.|.   |++.|.++..|..|+++|++.....
T Consensus        81 H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~  152 (155)
T 2rpc_A           81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP  152 (155)
T ss_dssp             HTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSC
T ss_pred             HHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            999999999999998  99999999999999999 889999996   9999999999999999998876544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=1.4e-21  Score=172.41  Aligned_cols=107  Identities=11%  Similarity=0.120  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCccccc
Q 011146           27 PNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (492)
Q Consensus        27 ~~~~~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (492)
                      ...+.++++|+|.+||+.|.....|..|+++|+++++|.|++|++.|.+...|..|+++|+             ++++|.
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~   80 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT-------------GERRYQ   80 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHH-------------TCCCEE
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccC-------------CCcccc
Confidence            3455688999999999999999999999999999999999999999999999999999998             899999


Q ss_pred             CCCCCCCCCCCCCcccChhhHHhhhcccCCCc------ccccCcCccccCChH
Q 011146          107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK------KWKCEKCSKKYAVQS  153 (492)
Q Consensus       107 C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek------p~~C~~C~k~F~~~~  153 (492)
                      |++|       ++.|.....|..|+++|++++      +|+|.+|++.|....
T Consensus        81 C~~C-------~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           81 CLAC-------GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             ESSS-------CCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             CCCC-------CCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            9999       999999999999999998764      589999999887653

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.5e-19  Score=151.73  Aligned_cols=102  Identities=14%  Similarity=0.217  Sum_probs=89.5

Q ss_pred             hhHhhhCccccCCCCceecccccccccChhhHHHHHHh--cCCCcccccccccccCcccc-cCCCCCCCCCCCCCcc--c
Q 011146           48 AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRG--HNLPWKLKQRTNKEVRKKVY-ICPEKSCVHHDPSRAL--G  122 (492)
Q Consensus        48 ~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~--H~~~~~~~~~~~~~~~~k~y-~C~~C~C~~~~c~k~f--~  122 (492)
                      ...|..|++.|.++++|+|++|++.|.++..|..|++.  |.             +++++ .|++|       ++.|  .
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------Ccccccc
Confidence            45688999999999999999999999999999999998  65             55555 59999       8777  8


Q ss_pred             ChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          123 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       123 ~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      ....|..|+++|++++||.|++|++.|.....|..|+++ +......+
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            999999999999999999999999999999999999988 55544433

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=1.6e-18  Score=145.28  Aligned_cols=91  Identities=23%  Similarity=0.525  Sum_probs=70.5

Q ss_pred             CCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ..+++|.|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCC
Confidence            45667888888888888888888887776             6777888877       788888888888888888888


Q ss_pred             ccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      +|+|.+|++.|.....|..|+++ +++++|.+
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            88888888888888888888777 66676653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.2e-18  Score=146.61  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=87.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhc
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS  132 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~  132 (492)
                      .+++.|.++++|+|++|++.|.....|..|+++|.               ++|.|++|       ++.|.....|..|++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES   63 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH
Confidence            46778899999999999999999999999999984               68999999       999999999999996


Q ss_pred             ccCCCcccccCcCccccCChHHHHHhhh-h-cCCCceeec
Q 011146          133 RKHGEKKWKCEKCSKKYAVQSDWKAHSK-I-CGTREYRCD  170 (492)
Q Consensus       133 ~H~~ekp~~C~~C~k~F~~~~~L~~H~~-~-~~~kp~~C~  170 (492)
                       |+++++|+|++|++.|.....|..|++ + .++++|.|.
T Consensus        64 -H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 -KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence             999999999999999999999999998 5 678888874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=3e-18  Score=143.64  Aligned_cols=96  Identities=18%  Similarity=0.303  Sum_probs=90.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCccccc
Q 011146           27 PNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (492)
Q Consensus        27 ~~~~~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (492)
                      ..+...+++|+|.+|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|.             ++++|.
T Consensus         9 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~   75 (106)
T 2ee8_A            9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-------------KEKPFK   75 (106)
T ss_dssp             CCCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSC-------------CCCTTS
T ss_pred             cCCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhC-------------CCCCeE
Confidence            3445667889999999999999999999999999999999999999999999999999998             899999


Q ss_pred             CCCCCCCCCCCCCcccChhhHHhhhcccCCCccccc
Q 011146          107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (492)
Q Consensus       107 C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C  142 (492)
                      |++|       ++.|.....|..|+++|+++++|.+
T Consensus        76 C~~C-------~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           76 CQEC-------GKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CSSS-------CCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCc-------CCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9999       9999999999999999999999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.3e-18  Score=141.55  Aligned_cols=87  Identities=28%  Similarity=0.504  Sum_probs=52.2

Q ss_pred             CCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      .++++|.|++|++.|.+...|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   63 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDER   63 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCCC
Confidence            44555666666666666666666666665             5556666665       666666666666666666666


Q ss_pred             ccccCcCccccCChHHHHHhhhh-cCCC
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (492)
                      +|+|.+|++.|.....|..|+++ ++++
T Consensus        64 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           64 PFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            66666666666666666666555 4443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2e-17  Score=135.88  Aligned_cols=91  Identities=13%  Similarity=0.213  Sum_probs=86.1

Q ss_pred             CCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        31 ~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .++++|+|.+|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|.             ++++|.|++|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C   70 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------------DERPFKCQIC   70 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CCCCEECSSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC
Confidence            456789999999999999999999999999999999999999999999999999998             8999999999


Q ss_pred             CCCCCCCCCcccChhhHHhhhcccCCCcccc
Q 011146          111 SCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (492)
Q Consensus       111 ~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~  141 (492)
                             ++.|.....|..|+++|+++++..
T Consensus        71 -------~~~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           71 -------PYASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             -------SCEESSHHHHHHHHTTCCSCCCCC
T ss_pred             -------CCccCCHHHHHHHHHHhcCCCCCC
Confidence                   999999999999999999987643

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.9e-17  Score=135.71  Aligned_cols=83  Identities=25%  Similarity=0.500  Sum_probs=66.5

Q ss_pred             CCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC-
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE-  137 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e-  137 (492)
                      .++++|.|++|++.|.+...|..|++.|.             ++++|.|++|       ++.|.....|..|++.|+++ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSV   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            45677888888888888888888888887             7778888887       88888888888888888776 


Q ss_pred             -cccccCcCccccCChHHHHHhhhh
Q 011146          138 -KKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       138 -kp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                       ++|+|.+|++.|.....|..|++.
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~   87 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQ   87 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCceECCCccchhCCHHHHHHHHHH
Confidence             778888888888888888888764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=8.8e-18  Score=136.17  Aligned_cols=85  Identities=26%  Similarity=0.555  Sum_probs=61.4

Q ss_pred             CCceecc--cccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           61 TNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        61 ~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      +++|.|+  .|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCCC
Confidence            5677776  47777777777777777776             6677777777       777777777777777777777


Q ss_pred             ccccCcCccccCChHHHHHhhhh-cCCC
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (492)
                      +|.|.+|++.|.....|..|+++ ++++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            77777777777777777777776 4443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.5e-17  Score=140.41  Aligned_cols=83  Identities=18%  Similarity=0.384  Sum_probs=45.0

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      .|+++++|.| +|++.|.+...|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcCC
Confidence            3455555555 55555555555555555554             4555555555       5555555555555555555


Q ss_pred             CcccccCcCccccCChHHHHHhhh
Q 011146          137 EKKWKCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~  160 (492)
                      +++|+|.+|++.|.....|..|++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~   86 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVT   86 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHH
Confidence            555555555554444444444443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=1.3e-17  Score=132.52  Aligned_cols=79  Identities=32%  Similarity=0.577  Sum_probs=61.0

Q ss_pred             ceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCccccc
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C  142 (492)
                      +|.|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|++.|+++++|.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            4777888888888778888877776             6777777777       7777777777777777777777777


Q ss_pred             CcCccccCChHHHHHhhhh
Q 011146          143 EKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       143 ~~C~k~F~~~~~L~~H~~~  161 (492)
                      .+|++.|.....|..|+++
T Consensus        61 ~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHh
Confidence            7777777777777777766

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.7e-17  Score=138.84  Aligned_cols=88  Identities=27%  Similarity=0.587  Sum_probs=82.9

Q ss_pred             ccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccC
Q 011146           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFS  176 (492)
Q Consensus        99 ~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~  176 (492)
                      |.++++|.| +|       ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         5 h~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            5 SSGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEES
T ss_pred             CCCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhc
Confidence            458999999 88       99999999999999999999999999999999999999999999 889999999 999999


Q ss_pred             ChhHHHHHHhHhcCcccc
Q 011146          177 RKDSFITHRAFCDALAEE  194 (492)
Q Consensus       177 ~~~~L~~H~~~h~~~~~~  194 (492)
                      ++..|..|++.|+.....
T Consensus        77 ~~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           77 WRDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHccccccc
Confidence            999999999999875543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.4e-18  Score=144.88  Aligned_cols=98  Identities=12%  Similarity=0.194  Sum_probs=88.1

Q ss_pred             hhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcc--cCCCcccc-cCcCcccc--C
Q 011146           76 DQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR--KHGEKKWK-CEKCSKKY--A  150 (492)
Q Consensus        76 ~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~--H~~ekp~~-C~~C~k~F--~  150 (492)
                      ...|..|+++|+             ++++|.|++|       ++.|.....|..|+++  |.+++++. |.+|++.|  .
T Consensus         4 ~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSC
T ss_pred             chhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccc
Confidence            345777888887             8999999999       9999999999999999  88888765 99999999  8


Q ss_pred             ChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHhHhcCccc
Q 011146          151 VQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDALAE  193 (492)
Q Consensus       151 ~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~  193 (492)
                      ....|..|+++ +++++|.|+ |++.|.++..|..|++.|+....
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            99999999999 889999999 99999999999999999886543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.67  E-value=5e-17  Score=131.68  Aligned_cols=84  Identities=23%  Similarity=0.581  Sum_probs=78.2

Q ss_pred             CcccccCC--CCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccC
Q 011146          101 RKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFS  176 (492)
Q Consensus       101 ~~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~  176 (492)
                      ++++|.|+  .|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            36899998  47       99999999999999999999999999999999999999999999 899999999 999999


Q ss_pred             ChhHHHHHHhHhcCc
Q 011146          177 RKDSFITHRAFCDAL  191 (492)
Q Consensus       177 ~~~~L~~H~~~h~~~  191 (492)
                      ++..|..|+++|++.
T Consensus        74 ~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           74 RSDERKRHTKIHLRQ   88 (90)
T ss_dssp             SHHHHHHHHGGGGC-
T ss_pred             CHHHHHHHHHHhccc
Confidence            999999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.66  E-value=6e-17  Score=128.71  Aligned_cols=80  Identities=24%  Similarity=0.548  Sum_probs=76.6

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHH
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSF  181 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L  181 (492)
                      ||.|++|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.++..|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5899998       99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHhHhcC
Q 011146          182 ITHRAFCDA  190 (492)
Q Consensus       182 ~~H~~~h~~  190 (492)
                      ..|+++|++
T Consensus        74 ~~H~~~H~g   82 (82)
T 2kmk_A           74 ITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhCC
Confidence            999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.5e-17  Score=137.61  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=87.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccc
Q 011146           26 NPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVY  105 (492)
Q Consensus        26 ~~~~~~~~~~~~c~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y  105 (492)
                      ....+.++++|+|.+|++.|.....|..|++.|  +++|.|++|++.|.....|..|++ |.             ++++|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~-------------~~~~~   70 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KC-------------EYKKL   70 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HC-------------STGGG
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cC-------------CCCCc
Confidence            345566788999999999999999999999998  578999999999999999999996 87             89999


Q ss_pred             cCCCCCCCCCCCCCcccChhhHHhhhc-ccCCCcccccC
Q 011146          106 ICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCE  143 (492)
Q Consensus       106 ~C~~C~C~~~~c~k~f~~~s~L~~H~~-~H~~ekp~~C~  143 (492)
                      .|++|       ++.|..+..|..|++ .|.++++|.|.
T Consensus        71 ~C~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           71 TCLEC-------MRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             EEGGG-------TEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cCccc-------cchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999       999999999999997 89999999885

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.6e-16  Score=128.89  Aligned_cols=84  Identities=23%  Similarity=0.460  Sum_probs=78.4

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCC--Cceeec-CCCcc
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT--REYRCD-CGTLF  175 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~--kp~~C~-C~k~F  175 (492)
                      .++++|.|++|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++  ++|.|. |++.|
T Consensus         3 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            3 SGSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            37899999999       99999999999999999999999999999999999999999999 665  899999 99999


Q ss_pred             CChhHHHHHHh-HhcC
Q 011146          176 SRKDSFITHRA-FCDA  190 (492)
Q Consensus       176 ~~~~~L~~H~~-~h~~  190 (492)
                      .++..|..|++ .|.+
T Consensus        76 ~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHhcCC
Confidence            99999999997 5543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.62  E-value=3.6e-16  Score=126.26  Aligned_cols=81  Identities=22%  Similarity=0.580  Sum_probs=59.7

Q ss_pred             CCceeccc--ccccccChhhHHHHHHhcCCCcccccccccccCcccccCC--CCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146           61 TNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus        61 ~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      .++|.|++  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            45677777  7777777777777777776             66777776  35       7777777777777777777


Q ss_pred             CcccccCcCccccCChHHHHHhhhh
Q 011146          137 EKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      +++|.|.+|++.|.....|..|+++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHh
Confidence            7777777777777777777777765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=5.6e-16  Score=127.96  Aligned_cols=83  Identities=20%  Similarity=0.514  Sum_probs=66.2

Q ss_pred             CCCCceeccc--ccccccChhhHHHHHHhcCCCcccccccccccCcccccCC--CCCCCCCCCCCcccChhhHHhhhccc
Q 011146           59 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus        59 ~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      ...++|.|++  |++.|.....|..|++.|.             ++++|.|.  .|       ++.|.....|..|+++|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   70 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKH   70 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHh
Confidence            3456788886  8888888888888888887             77788886  35       88888888888888888


Q ss_pred             CCCcccccCcCccccCChHHHHHhhhh
Q 011146          135 HGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       135 ~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      +++++|+|.+|++.|.....|..|+++
T Consensus        71 ~~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           71 TGAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             TSCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCCeECCCCcCccCCHHHHHHHHHH
Confidence            888888888888888888888888776

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.61  E-value=4e-16  Score=117.91  Aligned_cols=58  Identities=24%  Similarity=0.582  Sum_probs=51.8

Q ss_pred             CCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ||||+|++|||.|.+...|..|+++|+             +++||.|++|       ++.|...+.|.+|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            688999999999999999999999997             8899999998       999999999999999998875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=8.7e-16  Score=123.20  Aligned_cols=84  Identities=15%  Similarity=0.322  Sum_probs=73.9

Q ss_pred             HhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHh
Q 011146           50 VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKK  129 (492)
Q Consensus        50 ~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~  129 (492)
                      .+..|+++|+++++|.|++|++.|.....|..|++.|+..         ...+++|.|++|       ++.|.....|..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~---------~~~~~~~~C~~C-------~~~f~~~~~L~~   65 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---------NFVPAAFVCSKC-------GKTFTRRNTMAR   65 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS---------SCCCCCEECSSS-------CCEESCHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCC---------cCCCcceECCCC-------CChhCCHHHHHH
Confidence            4678999999999999999999999999999999887610         001378999999       999999999999


Q ss_pred             hhcccCCCcccccCcCcccc
Q 011146          130 HFSRKHGEKKWKCEKCSKKY  149 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F  149 (492)
                      |+++|++++++.|..|+..|
T Consensus        66 H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           66 HADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHccCCCCcccCCCCCCC
Confidence            99999999999999999865

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.58  E-value=1.7e-16  Score=128.73  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=56.2

Q ss_pred             CCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCccc
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKW  140 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~  140 (492)
                      +++|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            356777777777777777777777776             6677777776       7777777777777777663 667


Q ss_pred             ccCcCccccCChHHHHHhhhh
Q 011146          141 KCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      .|+.|++.|.....|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            777777777777777777655

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.58  E-value=2e-15  Score=124.67  Aligned_cols=84  Identities=23%  Similarity=0.540  Sum_probs=78.9

Q ss_pred             cCcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCCcccccC--cCccccCChHHHHHhhhh-cCCCceeec-CCC
Q 011146          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYRCD-CGT  173 (492)
Q Consensus       100 ~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k  173 (492)
                      ..+++|.|++  |       ++.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++ +++++|.|. |++
T Consensus        11 ~~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   83 (100)
T 2ebt_A           11 EKRRIHYCDYPGC-------TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNR   83 (100)
T ss_dssp             CSCCCEECCSSSC-------CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCC
T ss_pred             ccCcceEcCCCCC-------CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcC
Confidence            4678999997  7       99999999999999999999999996  699999999999999999 899999999 999


Q ss_pred             ccCChhHHHHHHhHhcC
Q 011146          174 LFSRKDSFITHRAFCDA  190 (492)
Q Consensus       174 ~F~~~~~L~~H~~~h~~  190 (492)
                      .|.++..|..|+++|.+
T Consensus        84 ~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           84 SFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             BCSSHHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHhCC
Confidence            99999999999999863

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.57  E-value=1.2e-16  Score=129.53  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhhcCCCceeec-CCCccCChhH
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDS  180 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~F~~~~~  180 (492)
                      +++|.|++|       ++.|.....|..|+++|+++++|.|++|++.|.....|..|++++..++|.|+ |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            579999999       99999999999999999999999999999999999999999999556999999 9999999999


Q ss_pred             HHHHHhHhcCcc
Q 011146          181 FITHRAFCDALA  192 (492)
Q Consensus       181 L~~H~~~h~~~~  192 (492)
                      |..|++.+++..
T Consensus        74 L~~H~~~~h~~~   85 (88)
T 1llm_C           74 LENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh
Confidence            999999887643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.57  E-value=2.5e-15  Score=121.34  Aligned_cols=81  Identities=26%  Similarity=0.548  Sum_probs=76.6

Q ss_pred             CcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCCcccccC--cCccccCChHHHHHhhhh-cCCCceeec-CCCc
Q 011146          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTL  174 (492)
Q Consensus       101 ~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~  174 (492)
                      +.++|.|++  |       ++.|.....|..|++.|+++++|.|.  .|++.|.....|..|+++ +++++|.|. |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            457899999  7       99999999999999999999999997  599999999999999999 899999999 9999


Q ss_pred             cCChhHHHHHHhHh
Q 011146          175 FSRKDSFITHRAFC  188 (492)
Q Consensus       175 F~~~~~L~~H~~~h  188 (492)
                      |.....|..|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.6e-15  Score=119.88  Aligned_cols=72  Identities=21%  Similarity=0.487  Sum_probs=64.5

Q ss_pred             CCCCceeccc--ccccccChhhHHHHHH-hcCCCcccccccccccCcccccCCC--CCCCCCCCCCcccChhhHHhhhcc
Q 011146           59 MATNRFLCEI--CNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSR  133 (492)
Q Consensus        59 ~~~k~~~C~~--Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~  133 (492)
                      +++++|.|+.  |++.|.++..|..|++ .|.             ++++|.|++  |       ++.|..+..|.+|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            4678899987  9999999999999998 687             889999998  8       9999999999999999


Q ss_pred             cCCCcccccCcCccccC
Q 011146          134 KHGEKKWKCEKCSKKYA  150 (492)
Q Consensus       134 H~~ekp~~C~~C~k~F~  150 (492)
                      |+++++|+|++|++.|.
T Consensus        63 H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHTSCCCSCCSSSCCCC
T ss_pred             hCCCCCeeCCCCCCCCC
Confidence            99999999999999884

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=4.8e-15  Score=116.92  Aligned_cols=69  Identities=26%  Similarity=0.425  Sum_probs=60.0

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcc
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~  133 (492)
                      +...+.++++|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+++
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~   68 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRV   68 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGG
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHH
Confidence            3445677888999999999999999999999887             7888999998       8999999999999999


Q ss_pred             cCCCccccc
Q 011146          134 KHGEKKWKC  142 (492)
Q Consensus       134 H~~ekp~~C  142 (492)
                      |++++||+|
T Consensus        69 H~~~~p~~C   77 (77)
T 2cot_A           69 HTGSGPSSG   77 (77)
T ss_dssp             SCCCCCCCC
T ss_pred             hCCCCCCCC
Confidence            999999887

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.53  E-value=4.2e-16  Score=135.35  Aligned_cols=120  Identities=15%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      .+.+.++|.|..++...  ...+..|.+.|..          ...++.+.|++|. ....+.+.|.....|..|+ .|++
T Consensus         6 ~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l----------~~~~~~~~c~~~~-~~~~~~~~~~~~~~l~~h~-~h~~   71 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFI--HVTLEELKRYHQL----------TPEQKRLIRAIVK-TLIHNPQLLDESSYLYRLL-ASKA   71 (129)
T ss_dssp             CCTTCCGGGGCSSCEEE--ECCHHHHHHHTTS----------CHHHHHHHHHHHH-HHHHCGGGTTTHHHHHHHH-HHHH
T ss_pred             hcccccccccccCCeee--eecHHhhhccccC----------ChhhCcccchhhh-cccCCCcccCCHHHHHHHH-HhCC
Confidence            45677778776644332  2334455444431          1145667777660 0001123344566666666 5778


Q ss_pred             CcccccCcCccccCChHHHHHhhhhcCCCceeec-CCCccCChhHHHHHHhHhcCc
Q 011146          137 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHRAFCDAL  191 (492)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~  191 (492)
                      ++||.|++|++.|.....|..|+++| ++||.|+ |++.|.++..|.+|++.|++.
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            88888888888888888888888777 7888888 888888888888888888764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.52  E-value=4.6e-15  Score=112.02  Aligned_cols=53  Identities=23%  Similarity=0.496  Sum_probs=39.9

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ||||.|++|       ++.|.....|..|+++|+++|||.|.+|++.|.....|..|+++
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc
Confidence            567777777       77777777777777777777777777777777777777777777

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.51  E-value=1e-14  Score=116.32  Aligned_cols=76  Identities=25%  Similarity=0.536  Sum_probs=67.9

Q ss_pred             ceec--ccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           63 RFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        63 ~~~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ||+|  ++|++.|.....|..|+++|.             ++++|.|++  |       ++.|.....|..|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            5889  889999999999999999987             788999988  7       9999999999999999988  


Q ss_pred             ccccCc---CccccCChHHHHHhhhh
Q 011146          139 KWKCEK---CSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~---C~k~F~~~~~L~~H~~~  161 (492)
                       |.|.+   |++.|.....|..|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             89988   99999999999988876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=5.6e-15  Score=122.52  Aligned_cols=80  Identities=14%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             CCChhHhhhCccccCCCCceeccccccccc-ChhhHHHHHHhcCCCcccccccccccC-cccccCCCCCCCCCCCCCccc
Q 011146           45 DPDAEVIALSPKSLMATNRFLCEICNKGFQ-RDQNLQLHRRGHNLPWKLKQRTNKEVR-KKVYICPEKSCVHHDPSRALG  122 (492)
Q Consensus        45 ~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~-~~~~L~~H~r~H~~~~~~~~~~~~~~~-~k~y~C~~C~C~~~~c~k~f~  122 (492)
                      +.....+..|++.|.++++|.|++|++.|. ++..|..|+++|+             + +++|.|++|       ++.|.
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~-------------~~~~~~~C~~C-------~k~F~   65 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ-------------KLQDALKCQHC-------RKQFK   65 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH-------------HHHHHHSCSSS-------CCCCS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc-------------CCCCCEECCCC-------CCccC
Confidence            444556778888888888888888888888 8888888888887             6 788888888       88888


Q ss_pred             ChhhHHhhhcccCCCcccccCc
Q 011146          123 DLTGIKKHFSRKHGEKKWKCEK  144 (492)
Q Consensus       123 ~~s~L~~H~~~H~~ekp~~C~~  144 (492)
                      .+..|.+|+++|++++|+....
T Consensus        66 ~~~~L~~H~~~h~~~kp~~~~~   87 (98)
T 2gqj_A           66 SKAGLNYHTMAEHSAKPSDAEA   87 (98)
T ss_dssp             CHHHHHHHHHHHSCSCSSCCCC
T ss_pred             CHHHHHHHHHHHcCCCCCCCCC
Confidence            8888888888888888865543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.4e-14  Score=121.51  Aligned_cols=73  Identities=16%  Similarity=0.286  Sum_probs=59.2

Q ss_pred             cCCCCceecccccccccChhhHHHHHH-hcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhh-hcccC
Q 011146           58 LMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKH-FSRKH  135 (492)
Q Consensus        58 h~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H-~~~H~  135 (492)
                      -+++++|.|++|++.|.++..|..|++ .|.+.          .++++|.|++|       ++.|..+..|..| +++|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~----------~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV----------VLNSSYVCVEC-------NFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC----------CCSCCEEETTT-------TEEESSTHHHHTHHHHTST
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC----------CCCCCcCCCCC-------CcccCCHHHHHHHHHHhcC
Confidence            367888999999999999999999987 48300          15788999988       8999999999999 78899


Q ss_pred             CCcccccCcCcc
Q 011146          136 GEKKWKCEKCSK  147 (492)
Q Consensus       136 ~ekp~~C~~C~k  147 (492)
                      +++||.|.++.+
T Consensus        76 gekpy~C~~~~~   87 (102)
T 2ghf_A           76 GEENFKLTMVKR   87 (102)
T ss_dssp             TCCCEEEEECCC
T ss_pred             CCCCeeCCcccC
Confidence            999999987543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=8e-15  Score=117.50  Aligned_cols=68  Identities=21%  Similarity=0.435  Sum_probs=48.3

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC----cccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCc
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE----KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTL  174 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e----kp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~  174 (492)
                      ++++|.|++|       ++.|.....|..|++.|+.+    ++|.|.+|++.|.....|..|+++ ++++++.|. |+..
T Consensus        12 ~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A           12 GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            6777777776       77777777777777665554    567777777777777777777777 667777776 7665


Q ss_pred             c
Q 011146          175 F  175 (492)
Q Consensus       175 F  175 (492)
                      |
T Consensus        85 ~   85 (86)
T 1x6h_A           85 S   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.46  E-value=4.1e-14  Score=110.59  Aligned_cols=65  Identities=23%  Similarity=0.437  Sum_probs=54.0

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      ..+.++++|+|++|++.|.+...|..|++.|.             ++++|.|++|       ++.|..+..|.+|+++|+
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhcC
Confidence            34567788888888888888888888888887             7888888888       888888888888888888


Q ss_pred             CCccc
Q 011146          136 GEKKW  140 (492)
Q Consensus       136 ~ekp~  140 (492)
                      +++||
T Consensus        70 ~~kp~   74 (74)
T 2lce_A           70 GEKPY   74 (74)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            88876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.4e-14  Score=118.66  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             CCcccChhhHHhhhcccCCCcccccCcCccccC-ChHHHHHhhhh-cC-CCceeec-CCCccCChhHHHHHHhHhcCccc
Q 011146          118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA-VQSDWKAHSKI-CG-TREYRCD-CGTLFSRKDSFITHRAFCDALAE  193 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~-~~~~L~~H~~~-~~-~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~  193 (492)
                      ...+.....+..|+++|+++++|.|.+|++.|. ....|+.|+++ ++ +++|.|+ |++.|.++..|.+|++.|++..+
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            445666778899999999999999999999999 99999999999 77 8999999 99999999999999999997654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=4.9e-14  Score=111.20  Aligned_cols=70  Identities=21%  Similarity=0.442  Sum_probs=65.9

Q ss_pred             cCcccccCCC--CCCCCCCCCCcccChhhHHhhhc-ccCCCcccccCc--CccccCChHHHHHhhhh-cCCCceeec-CC
Q 011146          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRCD-CG  172 (492)
Q Consensus       100 ~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~-~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~  172 (492)
                      .++++|.|+.  |       ++.|.....|..|++ .|.++++|+|++  |++.|..+..|..|+++ +++++|.|+ |+
T Consensus         3 ~~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~   75 (79)
T 2dlk_A            3 SGSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG   75 (79)
T ss_dssp             SCCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSS
T ss_pred             CCCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCC
Confidence            3788999987  7       999999999999999 799999999999  99999999999999999 899999999 99


Q ss_pred             CccC
Q 011146          173 TLFS  176 (492)
Q Consensus       173 k~F~  176 (492)
                      +.|.
T Consensus        76 k~F~   79 (79)
T 2dlk_A           76 PSSG   79 (79)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.44  E-value=9e-15  Score=126.89  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             CCCCCCCCCCCCCCC--CCChhHhhhCccccCCCCceeccccccccc------ChhhHHHHHHhcCCCcccccccccccC
Q 011146           30 SSNQLKRKRNLPGTP--DPDAEVIALSPKSLMATNRFLCEICNKGFQ------RDQNLQLHRRGHNLPWKLKQRTNKEVR  101 (492)
Q Consensus        30 ~~~~~~~~c~~cg~~--~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~------~~~~L~~H~r~H~~~~~~~~~~~~~~~  101 (492)
                      +.+.++|.|..++..  |...+.+..+. ....+++|.|++|++.|.      ....|..|+ .|+             +
T Consensus         7 ~~~~k~~~~~~k~~~~~~s~ee~~~~~~-l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~   71 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFIHVTLEELKRYHQ-LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------A   71 (129)
T ss_dssp             CTTCCGGGGCSSCEEEECCHHHHHHHTT-SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------H
T ss_pred             cccccccccccCCeeeeecHHhhhcccc-CChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------C
Confidence            456778888766543  22222222232 223457799999998887      556677777 466             8


Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCC
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (492)
                      +++|.|++|       ++.|.....|..|+++|  ++||.|++|++.|.....|.+|+++ +++
T Consensus        72 ~~~~~C~~C-------~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLC-------LMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTT-------CCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCC-------CcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            999999999       99999999999999999  9999999999999999999999998 654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=9.1e-14  Score=108.10  Aligned_cols=65  Identities=26%  Similarity=0.405  Sum_probs=56.3

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcc
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~  133 (492)
                      +.++|.++++|+|++|++.|.+...|..|+++|.             ++++|.|++|       ++.|..+..|.+|+++
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------GEKPYKCLEC-------GKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------CSCCEECSSS-------CCEESSHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------CCCCeECCCC-------CcccCCHHHHHHHHHh
Confidence            4567888899999999999999999999998887             7888999988       8899999999999988


Q ss_pred             cCCCc
Q 011146          134 KHGEK  138 (492)
Q Consensus       134 H~~ek  138 (492)
                      |+++.
T Consensus        65 H~~~~   69 (72)
T 1x6e_A           65 HTSGP   69 (72)
T ss_dssp             HHSSS
T ss_pred             cCCCC
Confidence            88764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.42  E-value=4.1e-14  Score=112.81  Aligned_cols=78  Identities=21%  Similarity=0.203  Sum_probs=74.0

Q ss_pred             CCCC--CCCCCCCCChhHhhhCccccCCCCceeccc--ccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC-
Q 011146           35 KRKR--NLPGTPDPDAEVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE-  109 (492)
Q Consensus        35 ~~~c--~~cg~~~~~~~~l~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~-  109 (492)
                      +|+|  ..||+.|.....|..|++.|.++++|+|++  |++.|.+...|..|+++|+             +   |.|++ 
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~---~~C~~~   64 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-------------G---YPCKKD   64 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------S---EECCSC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC-------------C---CCCCCC
Confidence            4789  999999999999999999999999999998  9999999999999999997             5   99999 


Q ss_pred             --CCCCCCCCCCcccChhhHHhhhcccC
Q 011146          110 --KSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus       110 --C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                        |       ++.|.....|.+|+++|+
T Consensus        65 ~~C-------~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           65 DSC-------SFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SSC-------CCEESSHHHHHHHHHHCC
T ss_pred             CCC-------CCccCCHHHHHHHHHhcC
Confidence              6       999999999999999885

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=9.5e-14  Score=107.27  Aligned_cols=64  Identities=20%  Similarity=0.304  Sum_probs=51.9

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      .|.++++|+|++|++.|.+...|..|+++|.             ++++|.|++|       ++.|.....|.+|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhC
Confidence            4667788888888888888888888888887             7788888887       8888888888888888888


Q ss_pred             Cccc
Q 011146          137 EKKW  140 (492)
Q Consensus       137 ekp~  140 (492)
                      ++|.
T Consensus        63 ~~p~   66 (70)
T 1x5w_A           63 DMSG   66 (70)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            7764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.4e-13  Score=108.45  Aligned_cols=63  Identities=24%  Similarity=0.545  Sum_probs=59.4

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|..|+++ ++++||.|
T Consensus        14 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCC-------CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            47899999998       99999999999999999999999999999999999999999999 88999988

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.2e-13  Score=108.69  Aligned_cols=67  Identities=19%  Similarity=0.375  Sum_probs=60.2

Q ss_pred             HHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cC--CCceeec-CCCccCChhHHHHHHhHhcCccc
Q 011146          127 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG--TREYRCD-CGTLFSRKDSFITHRAFCDALAE  193 (492)
Q Consensus       127 L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~--~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~~  193 (492)
                      |.+|+++|++++||.|++|++.|.....|..|++. +.  +++|.|+ |++.|.++..|..|++.+|....
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            67899999999999999999999999999999984 43  3899999 99999999999999999886543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.5e-13  Score=113.72  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             ccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcc-cChhhHHhhhcccCCCcccccCcCcccc
Q 011146           71 KGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL-GDLTGIKKHFSRKHGEKKWKCEKCSKKY  149 (492)
Q Consensus        71 k~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f-~~~s~L~~H~~~H~~ekp~~C~~C~k~F  149 (492)
                      ..|.....|..|++.|.             ++++|.|++|       ++.| ..+..|+.|+++| ++++|.|.+|++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            45677778888888887             7888888888       8888 8888888888888 88888888888888


Q ss_pred             CChHHHHHh-hhhcCCCce
Q 011146          150 AVQSDWKAH-SKICGTREY  167 (492)
Q Consensus       150 ~~~~~L~~H-~~~~~~kp~  167 (492)
                      ..+..|+.| +++|.++||
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            888888888 666655554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.1e-13  Score=106.37  Aligned_cols=70  Identities=16%  Similarity=0.393  Sum_probs=60.0

Q ss_pred             HhhhCccccCCCCceecccccccccChhhHHHHHH-hcCCCcccccccccccC-cccccCCCCCCCCCCCCCcccChhhH
Q 011146           50 VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVR-KKVYICPEKSCVHHDPSRALGDLTGI  127 (492)
Q Consensus        50 ~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~-~k~y~C~~C~C~~~~c~k~f~~~s~L  127 (492)
                      .|..|+++|+++++|.|++|++.|.++..|..|++ .|.             + +++|.|++|       ++.|..+..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~-------------~~~~~~~C~~C-------~~~f~~~~~L   61 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT-------------ENVAKFHCPHC-------DTVIARKSDL   61 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS-------------SSCSSEECSSS-------SCEESSHHHH
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC-------------CCCCccCCCCC-------CCccCCHHHH
Confidence            35689999999999999999999999999999987 565             4 389999998       9999999999


Q ss_pred             HhhhcccCC-Ccc
Q 011146          128 KKHFSRKHG-EKK  139 (492)
Q Consensus       128 ~~H~~~H~~-ekp  139 (492)
                      ..|+++|++ ++|
T Consensus        62 ~~H~~~~H~~~~p   74 (77)
T 2ct1_A           62 GVHLRKQHSYSGP   74 (77)
T ss_dssp             HHHHHHTSCCSCC
T ss_pred             HHHHHHhCCCCCC
Confidence            999998654 444

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=4.9e-13  Score=103.88  Aligned_cols=62  Identities=27%  Similarity=0.615  Sum_probs=49.4

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHhHhcCc
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDAL  191 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~  191 (492)
                      +.++|+++++|+|++|++.|.....|..|+++ +++++|.|. |++.|.++..|.+|+++|++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            45677888888888888888888888888887 677888887 888888888888888887653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=3.4e-13  Score=111.61  Aligned_cols=79  Identities=13%  Similarity=0.223  Sum_probs=70.3

Q ss_pred             CCCCChhHhhhCccccCCCCceecccccccc-cChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcc
Q 011146           43 TPDPDAEVIALSPKSLMATNRFLCEICNKGF-QRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL  121 (492)
Q Consensus        43 ~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F-~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f  121 (492)
                      ..+.....|..|.+.|.++++|.|++|+|.| ..+..|+.|+++|              ++++|.|++|       ++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h--------------~~k~~~C~~C-------gk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--------------KQEMFTCHHC-------GKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH--------------CCCCCCCSSS-------CCCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH--------------CCCCeECCCC-------CCee
Confidence            3567778899999999999999999999999 9999999999998              4789999999       9999


Q ss_pred             cChhhHHhh-hcccCCCccccc
Q 011146          122 GDLTGIKKH-FSRKHGEKKWKC  142 (492)
Q Consensus       122 ~~~s~L~~H-~~~H~~ekp~~C  142 (492)
                      ..+..|+.| +++|+++..|.+
T Consensus        73 ~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCHHHHHHHhHHhcCCCCCCCC
Confidence            999999999 888987655544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=4.1e-13  Score=112.46  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=60.6

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhc-cc---CCCcccccCcCccccCChHHHHHh-hhh-cCCCceeec-CC
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RK---HGEKKWKCEKCSKKYAVQSDWKAH-SKI-CGTREYRCD-CG  172 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~-~H---~~ekp~~C~~C~k~F~~~~~L~~H-~~~-~~~kp~~C~-C~  172 (492)
                      .+++||.|++|       ++.|..+..|.+|++ +|   .+++||+|++|++.|..+..|..| +++ .+++||.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            58999999999       999999999999998 48   568999999999999999999999 788 899999997 54

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.35  E-value=6.9e-13  Score=107.28  Aligned_cols=64  Identities=17%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             ccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhh-cc
Q 011146           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF-SR  133 (492)
Q Consensus        55 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~-~~  133 (492)
                      +..+...++|.|++|+|.|.++..|..|+++|+             +++||.|++|       ++.|..+..|.+|+ +.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~   79 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLH-------------AAQVFPCKYC-------PATFYSSPGLTRHINKC   79 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTS-------------CSSSEECTTS-------SCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhcc-------------CCCccCCCCC-------CCEeCCHHHHHHhCccc
Confidence            344566777888888888888888888888887             7888888888       88888888888886 45


Q ss_pred             cCCCc
Q 011146          134 KHGEK  138 (492)
Q Consensus       134 H~~ek  138 (492)
                      |.+|+
T Consensus        80 H~~E~   84 (85)
T 2lv2_A           80 HPSEN   84 (85)
T ss_dssp             CTTCC
T ss_pred             CcCCC
Confidence            76664

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.1e-14  Score=111.19  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=63.6

Q ss_pred             hhHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhH
Q 011146           48 AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGI  127 (492)
Q Consensus        48 ~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L  127 (492)
                      ...|..|++.|.++++|.|++|++.|.....|..                    +++|.|++|       ++.|.....|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------------~~~~~C~~C-------~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------------------RKTPMCEKC-------RKDSCQEAAL   55 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------------------SSSCCCHHH-------HHTCSCCCSS
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------------------CCCCCCCCC-------ChhhcCHHHH
Confidence            4568889999999999999999999999887764                    478999998       9999999999


Q ss_pred             HhhhcccCCCcccccCcC
Q 011146          128 KKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       128 ~~H~~~H~~ekp~~C~~C  145 (492)
                      ..|+++|+++++|+|++|
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            999999999999999988

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=6.9e-13  Score=103.52  Aligned_cols=61  Identities=23%  Similarity=0.534  Sum_probs=50.5

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCce
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  167 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~  167 (492)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||
T Consensus        13 ~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            47788888887       88888888888888888888888888888888888888888888 677765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=7.2e-13  Score=100.85  Aligned_cols=59  Identities=29%  Similarity=0.584  Sum_probs=45.1

Q ss_pred             cccCCCcccccCcCccccCChHHHHHhhhh-c--CCCceeec-CCCccCChhHHHHHHhHhcC
Q 011146          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C--GTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       132 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~--~~kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      ++|++++||.|++|++.|.....|..|+++ +  ++++|.|+ |++.|.++..|..|++.||+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            567777778888888888777778877776 4  56778887 88888888888888777765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.4e-12  Score=100.64  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=37.2

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCc
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  166 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp  166 (492)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ ++++|
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            6 SGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            5566666666       66666666666666666666666666666666666666666665 55544

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=102.73  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=54.8

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhh-cccC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF-SRKH  135 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~-~~H~  135 (492)
                      .|+++++|+|++|++.|.++..|..|+++|..          ..++++|.|++|       ++.|..+..|.+|+ +.|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~----------~~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAE----------TVAALRFPCEFC-------GKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHH----------HTTTCCEECTTT-------CCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhc----------cCCCcccCCCCC-------CchhCCHHHHHHHHHHhCC
Confidence            37788899999999999999999999988860          002788999888       88999888999998 4566


Q ss_pred             CCcccccC
Q 011146          136 GEKKWKCE  143 (492)
Q Consensus       136 ~ekp~~C~  143 (492)
                      ++++....
T Consensus        64 ~~~~~~~~   71 (78)
T 2d9h_A           64 ALLLAPQE   71 (78)
T ss_dssp             TTSSCCSS
T ss_pred             CCCCCccc
Confidence            67665543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=1.1e-12  Score=99.77  Aligned_cols=62  Identities=19%  Similarity=0.354  Sum_probs=43.2

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHh-cCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhccc
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      ++|.++++|.|++|++.|.+...|..|++. |.            .++++|.|++|       ++.|.....|..|+++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~------------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK------------RNVKVYPCPFC-------FKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS------------SSCCCEECTTT-------CCEESCHHHHHHHHHHH
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC------------CCCcCeECCCC-------CCccCCHHHHHHHHHHH
Confidence            456667777777777777777777777766 51            15677777776       77777777777777776


Q ss_pred             CC
Q 011146          135 HG  136 (492)
Q Consensus       135 ~~  136 (492)
                      ++
T Consensus        64 H~   65 (66)
T 2drp_A           64 HK   65 (66)
T ss_dssp             TC
T ss_pred             cC
Confidence            64

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.29  E-value=1.1e-12  Score=96.71  Aligned_cols=55  Identities=29%  Similarity=0.499  Sum_probs=32.1

Q ss_pred             CCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      +++|.|++|++.|.+...|..|+++|.             ++++|.|++|       ++.|.....|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHT-------------GEKPYKCEFC-------EYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHH-------------CCCCEECSSS-------SCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcC-------------CCCCcCCCCC-------cchhCCHHHHHHHHHHhc
Confidence            455666666666666666666666665             5566666665       666666666666666554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.29  E-value=2.2e-12  Score=95.01  Aligned_cols=56  Identities=23%  Similarity=0.455  Sum_probs=46.8

Q ss_pred             ceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ||.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            5788888888888888888888887             7788888887       888888888888888888775

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.1e-12  Score=100.75  Aligned_cols=60  Identities=22%  Similarity=0.484  Sum_probs=49.8

Q ss_pred             ccCCCcccccCcCccccCChHHHHHhhhh-cC---CCceeec-CCCccCChhHHHHHHhHhcCcc
Q 011146          133 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG---TREYRCD-CGTLFSRKDSFITHRAFCDALA  192 (492)
Q Consensus       133 ~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~---~kp~~C~-C~k~F~~~~~L~~H~~~h~~~~  192 (492)
                      .|+++++|+|++|++.|.....|..|+++ ++   +++|.|+ |++.|.++..|..|++.+|...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            37888899999999999999999999888 43   7889998 9999999999999986666433

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.27  E-value=3.9e-12  Score=93.69  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             CCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ++.|.....|..|+++|++++||.|++|++.|.....|..|+++
T Consensus        11 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C           11 GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            55555555555555555555555555555555544444444443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.26  E-value=4.6e-12  Score=102.42  Aligned_cols=53  Identities=13%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhh
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~  160 (492)
                      ..++|+|++|       ++.|..+..|.+|+++|++++||.|++|++.|..+..|.+|++
T Consensus        25 ~~~~h~C~~C-------gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           25 SAECHLCPVC-------GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             CCTTEECTTS-------CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCEECCCC-------CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            4555666665       6666666666666666666666666666666666666666653

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6.1e-12  Score=102.62  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=51.1

Q ss_pred             ceecccccccccChhhHHHHHHh-cCCCcccccccccccCccc--------ccCCCCCCCCCCCCCcccChhhHHhhhcc
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKEVRKKV--------YICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~--------y~C~~C~C~~~~c~k~f~~~s~L~~H~~~  133 (492)
                      .|.|++|++.|.+...|..|++. |.             ++++        |.|++|       ++.|..+..|..|+++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHHh
Confidence            47899999999999999999987 76             5555        788887       8888888888888888


Q ss_pred             cCCCcccccC
Q 011146          134 KHGEKKWKCE  143 (492)
Q Consensus       134 H~~ekp~~C~  143 (492)
                      |++++||+|+
T Consensus        85 H~~~k~~~C~   94 (95)
T 2ej4_A           85 HTGEKSGPSS   94 (95)
T ss_dssp             HHTCCCCSSC
T ss_pred             cCCCCCCCCC
Confidence            8888888886

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=1e-11  Score=92.51  Aligned_cols=56  Identities=30%  Similarity=0.618  Sum_probs=39.1

Q ss_pred             CceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhh-cccCCC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF-SRKHGE  137 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~-~~H~~e  137 (492)
                      ++|.|++|++.|.+...|..|+++|+             ++++|.|++|       ++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCCc
Confidence            46777777777777777777777776             6677777776       77777777777775 456543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2e-13  Score=105.56  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=59.4

Q ss_pred             hhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHH
Q 011146           76 DQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDW  155 (492)
Q Consensus        76 ~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L  155 (492)
                      +..|..|+++|.             ++++|.|++|       ++.|.....|..       +++|.|++|++.|.....|
T Consensus         3 ~~~l~~H~~~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHL-------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAAL   55 (73)
T ss_dssp             CCSCCCCCCCCC-------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSS
T ss_pred             chhHHHHHHHhC-------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHHH
Confidence            345667777776             8899999998       999998888876       7899999999999999999


Q ss_pred             HHhhhh-cCCCceeec-C
Q 011146          156 KAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       156 ~~H~~~-~~~kp~~C~-C  171 (492)
                      ..|+++ +++++|.|+ |
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            999998 788999997 7

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.16  E-value=2.1e-11  Score=89.71  Aligned_cols=54  Identities=20%  Similarity=0.421  Sum_probs=40.8

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCC
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (492)
                      ||.|++|       ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++ +++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            4677777       77777777777777777777777777777777777777777776 443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=2.5e-11  Score=94.12  Aligned_cols=59  Identities=20%  Similarity=0.415  Sum_probs=49.6

Q ss_pred             ccCCCCceecc--cccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhccc
Q 011146           57 SLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus        57 ~h~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      .|.++++|.|+  .|++.|..+..|..|++.|.             ++++|.|++|       ++.|.....|.+|+++|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHTTC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------CCCCeECCCC-------CchhCCHHHHHHHHHhc
Confidence            46778888886  58888888888888888887             7888888888       88888888888888887


Q ss_pred             C
Q 011146          135 H  135 (492)
Q Consensus       135 ~  135 (492)
                      +
T Consensus        73 t   73 (73)
T 1f2i_G           73 T   73 (73)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=2.9e-11  Score=93.73  Aligned_cols=62  Identities=21%  Similarity=0.548  Sum_probs=45.4

Q ss_pred             HHhhhcc-cCCCcccccC--cCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHHHHHHhHh
Q 011146          127 IKKHFSR-KHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       127 L~~H~~~-H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      |..|+.. |.++++|.|+  .|++.|.....|..|+++ +++++|.|+ |++.|.++..|..|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            4444443 6677788886  488888888888888777 677788887 888888888888887766

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.4e-11  Score=99.07  Aligned_cols=65  Identities=17%  Similarity=0.086  Sum_probs=60.0

Q ss_pred             CCCCCCCCCCCCCCCChhHhhhCccc-cCCCCc--------eecccccccccChhhHHHHHHhcCCCcccccccccccCc
Q 011146           32 NQLKRKRNLPGTPDPDAEVIALSPKS-LMATNR--------FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRK  102 (492)
Q Consensus        32 ~~~~~~c~~cg~~~~~~~~l~~h~~~-h~~~k~--------~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~  102 (492)
                      ...++.|.+|++.|.....|..|++. |.++++        |.|++|++.|..+..|..|+++|+             ++
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~   88 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------GE   88 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH-------------TC
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC-------------CC
Confidence            34578899999999999999999998 998887        999999999999999999999998             89


Q ss_pred             ccccCCC
Q 011146          103 KVYICPE  109 (492)
Q Consensus       103 k~y~C~~  109 (492)
                      ++|.|+.
T Consensus        89 k~~~C~~   95 (95)
T 2ej4_A           89 KSGPSSG   95 (95)
T ss_dssp             CCCSSCC
T ss_pred             CCCCCCC
Confidence            9999973

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=4.5e-11  Score=88.90  Aligned_cols=51  Identities=20%  Similarity=0.549  Sum_probs=39.2

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhh
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~  160 (492)
                      ++|.|++|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            46777777       7777777778888777777777777777777777777777763

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.7e-11  Score=84.48  Aligned_cols=45  Identities=29%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS-------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.2e-11  Score=84.15  Aligned_cols=45  Identities=27%  Similarity=0.279  Sum_probs=43.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.3e-11  Score=84.16  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.3e-11  Score=84.16  Aligned_cols=45  Identities=24%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS-------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999986

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.3e-11  Score=84.09  Aligned_cols=45  Identities=24%  Similarity=0.246  Sum_probs=43.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.11  E-value=4e-11  Score=84.38  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS-------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.10  E-value=3.8e-11  Score=84.36  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.6e-11  Score=83.93  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=4.7e-11  Score=83.12  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      |++.|+++++|+|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            6789999999999999999999999999999998             8999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.4e-11  Score=84.12  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.1e-11  Score=83.69  Aligned_cols=45  Identities=24%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.8e-11  Score=84.43  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.10  E-value=4.8e-11  Score=84.01  Aligned_cols=45  Identities=29%  Similarity=0.376  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|+|.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.3e-11  Score=84.17  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.3e-11  Score=84.14  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.10  E-value=4.5e-11  Score=84.05  Aligned_cols=45  Identities=27%  Similarity=0.354  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|+|.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG-------------CCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.9e-11  Score=83.78  Aligned_cols=45  Identities=20%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT-------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS-------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.9e-11  Score=83.87  Aligned_cols=45  Identities=27%  Similarity=0.300  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT-------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT-------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5e-11  Score=83.81  Aligned_cols=45  Identities=29%  Similarity=0.342  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|+|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT-------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.4e-11  Score=84.20  Aligned_cols=45  Identities=27%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|+|.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS-------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.1e-11  Score=84.37  Aligned_cols=45  Identities=27%  Similarity=0.290  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH-------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            68999999999999999999999999999999998             8999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.7e-11  Score=83.98  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC-------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.09  E-value=4.5e-11  Score=84.06  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS-------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCcCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=5.5e-11  Score=90.63  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             cCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC-CCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP-EKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus        58 h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~-~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      ..++++|.|++|++.|. ...|..|+++ .             ++++|.|+ +|       ++.|..+..|..|+++|..
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C-------~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQC-------GVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCC-------SCCEEETTTHHHHHHTTSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCccc-------CcccccHHHHHHHHHhhcc
Confidence            34567777777777777 7777777777 5             67777777 77       7777777777777777765


Q ss_pred             Ccc
Q 011146          137 EKK  139 (492)
Q Consensus       137 ekp  139 (492)
                      .++
T Consensus        63 ~~~   65 (66)
T 2eod_A           63 TAL   65 (66)
T ss_dssp             SCC
T ss_pred             cCc
Confidence            554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=4.8e-11  Score=84.00  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS-------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.1e-11  Score=83.79  Aligned_cols=45  Identities=29%  Similarity=0.280  Sum_probs=42.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|+|++|+|.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT-------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.4e-11  Score=84.11  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH-------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5e-11  Score=83.76  Aligned_cols=45  Identities=22%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6e-11  Score=83.32  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.5e-11  Score=83.68  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=42.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47899999999999999999999999999999998             8999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=5.2e-11  Score=83.72  Aligned_cols=45  Identities=27%  Similarity=0.299  Sum_probs=42.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|+|.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT-------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.3e-11  Score=83.30  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT-------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT-------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.6e-11  Score=83.66  Aligned_cols=45  Identities=31%  Similarity=0.424  Sum_probs=42.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.2e-11  Score=83.75  Aligned_cols=45  Identities=29%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.6e-11  Score=82.88  Aligned_cols=45  Identities=29%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|.|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.08  E-value=6e-11  Score=83.31  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT-------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.08  E-value=7.4e-11  Score=83.01  Aligned_cols=45  Identities=29%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57899999999999999999999999999999998             8999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.4e-11  Score=83.58  Aligned_cols=45  Identities=24%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.5e-11  Score=83.21  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.7e-11  Score=83.95  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=6.4e-11  Score=83.18  Aligned_cols=45  Identities=24%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM-------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC-------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.3e-11  Score=83.29  Aligned_cols=45  Identities=24%  Similarity=0.281  Sum_probs=42.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=6.2e-11  Score=83.35  Aligned_cols=45  Identities=24%  Similarity=0.396  Sum_probs=42.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=6.4e-11  Score=83.41  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|+|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT-------------GQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH-------------SCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=9e-11  Score=82.49  Aligned_cols=45  Identities=20%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|.|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.7e-11  Score=83.98  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=42.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS-------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.6e-11  Score=82.95  Aligned_cols=45  Identities=27%  Similarity=0.416  Sum_probs=42.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.4e-10  Score=81.57  Aligned_cols=45  Identities=27%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=2.3e-10  Score=88.42  Aligned_cols=59  Identities=19%  Similarity=0.392  Sum_probs=45.0

Q ss_pred             cccCCCCceeccc--ccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC--CCCCCCCCCCcccChhhHHhhh
Q 011146           56 KSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHF  131 (492)
Q Consensus        56 ~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~  131 (492)
                      ......++|.|.+  |++.|.....|..|+++|.             ++++|.|++  |       ++.|..+..|.+|+
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~   69 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-------ERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-------CCEESSHHHHHHHT
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------CcccCCHHHHHhHh
Confidence            3455667788877  8888888888888888887             777888864  6       88888888888887


Q ss_pred             ccc
Q 011146          132 SRK  134 (492)
Q Consensus       132 ~~H  134 (492)
                      ++|
T Consensus        70 ~~H   72 (72)
T 2epa_A           70 RTH   72 (72)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            765

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=81.82  Aligned_cols=45  Identities=24%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHH-hcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|+++|.++++|.|++|++.|.++..|..|++ +|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999 998             8999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.1e-10  Score=80.58  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=41.5

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      ++++|+++++|+|++|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5678999999999999999999999999999998             8999999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.99  E-value=2.5e-10  Score=80.21  Aligned_cols=44  Identities=27%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|.++++|.|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.99  E-value=1.9e-10  Score=80.89  Aligned_cols=43  Identities=21%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|++++||.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 5

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=80.15  Aligned_cols=44  Identities=23%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            68899999999999999999999999999999998             899999975

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=81.65  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|++++||.|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            577788888888888888888888888888777 677888876 6

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.8e-10  Score=79.97  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            48899999999999999999999999999999998             899999975

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=80.69  Aligned_cols=43  Identities=21%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|++++||.|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 5

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=79.79  Aligned_cols=44  Identities=30%  Similarity=0.391  Sum_probs=41.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.7e-10  Score=80.07  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=41.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|+|++|+|.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=79.94  Aligned_cols=44  Identities=23%  Similarity=0.386  Sum_probs=41.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=80.85  Aligned_cols=43  Identities=23%  Similarity=0.454  Sum_probs=28.9

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            466666666667777777777766667777666 566666665 5

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.98  E-value=1.9e-10  Score=80.78  Aligned_cols=43  Identities=30%  Similarity=0.520  Sum_probs=30.4

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466677777777777777777777777777776 666777776 5

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.7e-10  Score=80.02  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT-------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.98  E-value=1.9e-10  Score=80.65  Aligned_cols=42  Identities=21%  Similarity=0.434  Sum_probs=28.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            466666666666666666666666666666666 566666665

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.4e-10  Score=80.17  Aligned_cols=43  Identities=30%  Similarity=0.485  Sum_probs=32.8

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477777777777777777777777777777777 677777776 6

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2e-10  Score=80.68  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=31.0

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.9e-10  Score=79.77  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT-------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS-------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            68899999999999999999999999999999998             899999975

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.1e-10  Score=80.57  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|.....|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477777888888888888888888888888777 677788876 6

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.9e-10  Score=80.77  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            466667777777777777777777777777766 566777765

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=80.52  Aligned_cols=43  Identities=19%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|++++||+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=80.46  Aligned_cols=43  Identities=28%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2e-10  Score=80.67  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=30.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            466777777777777777777777777777776 666777776

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.3e-10  Score=79.51  Aligned_cols=44  Identities=27%  Similarity=0.387  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS-------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.4e-10  Score=79.53  Aligned_cols=44  Identities=30%  Similarity=0.443  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.2e-10  Score=79.52  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            58899999999999999999999999999999998             899999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.5e-10  Score=79.33  Aligned_cols=44  Identities=27%  Similarity=0.337  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=80.49  Aligned_cols=43  Identities=23%  Similarity=0.419  Sum_probs=30.2

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777777777777777777777766 666777776 5

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4e-10  Score=79.12  Aligned_cols=44  Identities=25%  Similarity=0.346  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.2e-10  Score=80.37  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=29.6

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|++++||.|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466667777777777777777777777777766 566677765 5

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3e-10  Score=79.72  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS-------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.5e-10  Score=79.36  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      |+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45566666666666666666666666666666 556666665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.2e-10  Score=80.46  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 5

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.96  E-value=4e-10  Score=77.39  Aligned_cols=42  Identities=24%  Similarity=0.397  Sum_probs=39.6

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      |+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA-------------GESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC-------------CCCCCCCC
Confidence            6788999999999999999999999999999998             89999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.3e-10  Score=79.43  Aligned_cols=44  Identities=32%  Similarity=0.367  Sum_probs=41.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|.++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------SCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999985

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.4e-10  Score=80.21  Aligned_cols=43  Identities=28%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3e-10  Score=79.72  Aligned_cols=44  Identities=25%  Similarity=0.329  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC-------------CCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.9e-10  Score=79.24  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT-------------GERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT-------------CCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC-------------CCCCCCCCC
Confidence            68899999999999999999999999999999998             899999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.1e-10  Score=79.11  Aligned_cols=44  Identities=27%  Similarity=0.355  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT-------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2e-10  Score=80.64  Aligned_cols=43  Identities=26%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 677777776 5

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4e-10  Score=79.19  Aligned_cols=44  Identities=23%  Similarity=0.346  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT-------------QETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS-------------SCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.6e-10  Score=77.00  Aligned_cols=42  Identities=17%  Similarity=0.304  Sum_probs=39.5

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      |+++|.++++|.|++|++.|.++..|..|+++|.             ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT-------------VKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS-------------CCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            6788999999999999999999999999999998             89999984

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.5e-10  Score=78.88  Aligned_cols=44  Identities=23%  Similarity=0.285  Sum_probs=41.3

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|+             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47899999999999999999999999999999998             899999975

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.3e-10  Score=80.39  Aligned_cols=43  Identities=28%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477777777777777777777777777777777 677777776 5

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=79.49  Aligned_cols=44  Identities=30%  Similarity=0.384  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT-------------TCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.3e-10  Score=78.00  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=40.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|+++|.++++|.|++|++.|.+...|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT-------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC-------------CCCCCCCC
Confidence            68899999999999999999999999999999998             89999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.6e-10  Score=79.33  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC-------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.1e-10  Score=79.86  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999998             899999975

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.7e-10  Score=79.96  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=31.2

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      .|+++|++++||.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.3e-10  Score=87.12  Aligned_cols=52  Identities=17%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccC-cCccccCChHHHHHhhhh
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE-KCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~-~C~k~F~~~~~L~~H~~~  161 (492)
                      ++++|.|++|       ++.|. ...|..|+++ ++++||.|+ +|++.|..+..|..|+++
T Consensus         7 ~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            7 GKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            6788888888       88888 8888888888 888888888 888888888888888877

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.1e-10  Score=80.52  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCeECCCC-------CCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666655

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.9e-10  Score=80.81  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=23.6

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666555

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.6e-10  Score=80.11  Aligned_cols=44  Identities=25%  Similarity=0.283  Sum_probs=41.3

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .+++|.++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4678999999999999999999999999999998             8999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.6e-10  Score=79.97  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777777777777777777777766 566777776 5

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.1e-10  Score=80.54  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=24.8

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDC-------GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTT-------CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5666666666       6666666666666666666666666655

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.5e-10  Score=78.89  Aligned_cols=44  Identities=30%  Similarity=0.324  Sum_probs=41.3

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccC-cccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVR-KKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~-~k~y~C~~  109 (492)
                      .|+++|.++++|.|++|++.|.+...|..|+++|+             + +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8 89999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.94  E-value=2.2e-10  Score=80.42  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=23.9

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCREC-------DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSS-------CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            5666666665       6666666666666666666666666655

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=6.3e-10  Score=81.25  Aligned_cols=48  Identities=23%  Similarity=0.424  Sum_probs=43.5

Q ss_pred             cccCCCCceecccccccccChhhHHHHHH-hcCCCcccccccccccCcccccCCCCCCCCCCCCCcccC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD  123 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~  123 (492)
                      ..|.++++|.|++|++.|.+...|..|++ +|.             ++++|.|++|       ++.|..
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            45788999999999999999999999987 897             8999999998       998865

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.8e-10  Score=79.33  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      |+++|++++||+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66777777777777777777777777777777 677777776 5

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.4e-10  Score=78.02  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|+++|+++++|+|++|++.|.++..|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             89999985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.9e-10  Score=78.19  Aligned_cols=43  Identities=23%  Similarity=0.364  Sum_probs=40.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC-------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC-------------CCCCCCCC
Confidence            68899999999999999999999999999999998             89999985

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.4e-10  Score=80.35  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=24.8

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            9 GEKPYGCSEC-------GKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCBCSSS-------CCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCcCCCcc-------ChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            6666666666       6666666666666666666666666665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.5e-10  Score=80.28  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=23.6

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666655

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5e-10  Score=78.66  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999998             899999975

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2e-10  Score=80.65  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=23.3

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNEC-------GKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSS-------CCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCeECCCC-------CchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666555

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.3e-10  Score=80.38  Aligned_cols=38  Identities=21%  Similarity=0.194  Sum_probs=25.4

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            9 GEKPYKCEEC-------GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCcCccCCCc-------cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6666666666       6666666666666666666666666665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.1e-10  Score=79.64  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      .|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777777777777777777777 667777776 5

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=4.9e-10  Score=81.82  Aligned_cols=46  Identities=17%  Similarity=0.298  Sum_probs=38.4

Q ss_pred             ccCcccccCCCCCCCCCCCCCcccChhhHHhhhc-ccCCCcccccCcCccccCC
Q 011146           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAV  151 (492)
Q Consensus        99 ~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~-~H~~ekp~~C~~C~k~F~~  151 (492)
                      +.++++|.|++|       ++.|.....|.+|++ +|++++||+|++|++.|..
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            457888888888       888888888888886 7888888888888888865

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.7e-10  Score=79.94  Aligned_cols=38  Identities=16%  Similarity=0.081  Sum_probs=23.3

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECREC-------GKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTT-------CCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCeeCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666555

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=6.7e-10  Score=77.15  Aligned_cols=43  Identities=30%  Similarity=0.381  Sum_probs=40.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|+++|.++++|.|++|++.|.++..|..|+++|+             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA-------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC-------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999984

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5.3e-10  Score=78.38  Aligned_cols=44  Identities=25%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999974

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.92  E-value=6e-10  Score=86.00  Aligned_cols=55  Identities=22%  Similarity=0.475  Sum_probs=44.7

Q ss_pred             cCcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCCcccccCc--CccccCChHHHHHhhhh
Q 011146          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       100 ~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~  161 (492)
                      ...++|.|++  |       ++.|.....|..|+++|+++++|+|.+  |++.|.....|.+|+++
T Consensus        13 ~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           13 SRIRSHICSHPGC-------GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCEECSSTTT-------CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             cccCceeCCCCCC-------ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            4677888877  6       888888888888888888888888864  88888888888888764

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.8e-10  Score=79.84  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNEC-------GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTT-------CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666555

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.4e-10  Score=80.30  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=24.0

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHEC-------GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5666666665       6666666666666666666666666655

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.92  E-value=2.1e-10  Score=80.68  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVEC-------GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSS-------CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5555555555       5555555555555555555555555554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.91  E-value=2.7e-10  Score=79.88  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=24.3

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKEC-------GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCcCeECCcc-------ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5666666666       6666666666666666666666666655

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.5e-10  Score=80.12  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6666777666       6667666667777666666666666665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.6e-10  Score=78.87  Aligned_cols=44  Identities=34%  Similarity=0.399  Sum_probs=41.6

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .|+++|.++++|+|++|++.|.+...|..|+++|+             ++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH-------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.91  E-value=1.5e-10  Score=87.27  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=38.1

Q ss_pred             HHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChhHH
Q 011146          127 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSF  181 (492)
Q Consensus       127 L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~~L  181 (492)
                      |..|+++|++++||.|++|++.|.....|.   ++ .+++||.|. |++.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            456777788888888888888887777665   44 667788887 88877766554

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=6.2e-10  Score=77.30  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=40.7

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|++.|.++++|.|++|++.|.+...|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA-------------AKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC-------------CCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCC
Confidence            58899999999999999999999999999999998             89999985

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.7e-10  Score=79.89  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=23.1

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDEC-------GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTT-------CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCc-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666555

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=2.7e-10  Score=80.05  Aligned_cols=38  Identities=21%  Similarity=0.173  Sum_probs=23.4

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|.....|.+|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHEC-------GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSS-------CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCeECCcC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666555

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.89  E-value=9.1e-10  Score=75.49  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=39.0

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (492)
                      |+++|.++++|.|++|++.|.++..|..|+++|+             ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            6788999999999999999999999999999998             8899988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6e-10  Score=78.23  Aligned_cols=42  Identities=29%  Similarity=0.458  Sum_probs=28.4

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-C
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-C  171 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C  171 (492)
                      |+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+ |
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56666666667776677666666666666666 566666665 5

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=9.4e-10  Score=76.85  Aligned_cols=42  Identities=19%  Similarity=0.434  Sum_probs=40.0

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      ..|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            56889999999999999999999999999998             8999999998

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=3.1e-10  Score=79.64  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=23.5

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            9 GEKPFKCEEC-------GKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCcCCCCC-------CCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5566666665       6666666666666666666666666655

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.5e-10  Score=80.17  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            9 GEKPYKCEKC-------GKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SCCSEEETTT-------TEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            5555555555       5555555555555555555555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.5e-10  Score=78.00  Aligned_cols=43  Identities=26%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH-------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             89999996

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.88  E-value=3.9e-10  Score=79.21  Aligned_cols=38  Identities=13%  Similarity=0.105  Sum_probs=24.4

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            9 GVNPYKCSQC-------EKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5666666666       6666666666666666666666666655

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.9e-10  Score=79.16  Aligned_cols=38  Identities=26%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAEC-------GKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5555666555       5556665566666555555555555543

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.1e-09  Score=76.84  Aligned_cols=43  Identities=28%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      +++.|.++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5678999999999999999999999999999998             899999975

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=3.4e-10  Score=79.48  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=21.9

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.+|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCREC-------GEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCEEcccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5555555555       5555555555555555555555555554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.88  E-value=4.2e-10  Score=91.42  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=53.2

Q ss_pred             hhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhh
Q 011146           51 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKH  130 (492)
Q Consensus        51 l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H  130 (492)
                      +..+.+.|+++++|.|++|++.|.+...|..|+++|+             ++++|.|..|       .+    ...|..|
T Consensus        13 ~~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~~-------~~----~~~~~~~   68 (88)
T 1x6f_A           13 IILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------EEFQKRAKRQ-------ER----RKQLLSK   68 (88)
T ss_dssp             CCCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------HHHHHHCCCC-------SC----CCCCCCC
T ss_pred             eeccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------CCCCcccchh-------hh----HHHHHhh
Confidence            3456678999999999999999999999999999998             8999999887       33    4567788


Q ss_pred             hcccCC
Q 011146          131 FSRKHG  136 (492)
Q Consensus       131 ~~~H~~  136 (492)
                      .+.|.+
T Consensus        69 ~~~~~~   74 (88)
T 1x6f_A           69 QKYADG   74 (88)
T ss_dssp             CCCCCC
T ss_pred             hccccc
Confidence            888877

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1e-09  Score=76.60  Aligned_cols=43  Identities=30%  Similarity=0.383  Sum_probs=39.9

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      +.++|.++++|+|++|+|.|.++..|..|+++|+             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5678999999999999999999999999999998             899999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7e-10  Score=76.16  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (492)
                      |+++|+++++|.|++|++.|.++..|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHH-------------SCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcC-------------CCCCCCC
Confidence            7889999999999999999999999999999998             8899988

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.8e-10  Score=76.48  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=39.4

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (492)
                      .|+++|+++++|.|++|++.|.++..|..|+++|+             ++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS-------------CCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhC-------------CCCCCCC
Confidence            47889999999999999999999999999999998             8899988

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=76.18  Aligned_cols=43  Identities=23%  Similarity=0.149  Sum_probs=40.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|++.|.++++|.|++|++.|.+...|..|+++|+             ++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA-------------GESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT-------------TSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC-------------CCCCCCCC
Confidence            37888999999999999999999999999999998             89999985

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.9e-10  Score=75.96  Aligned_cols=41  Identities=29%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (492)
                      |+++|.++++|.|++|++.|.++..|..|+++|+             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS-------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC-------------CCCCCCC
Confidence            7789999999999999999999999999999998             8899988

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.87  E-value=9e-10  Score=75.58  Aligned_cols=41  Identities=20%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      |+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            56677777777777777777777777777777 667777763

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.87  E-value=3.5e-10  Score=85.27  Aligned_cols=57  Identities=12%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             hhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhh
Q 011146           51 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKH  130 (492)
Q Consensus        51 l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H  130 (492)
                      |..|++.|+++++|.|++|++.|.....|.   ++|.             ++++|.|++|       ++.|.....+..+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~-------------~~k~~~C~~C-------~k~f~~~~~~~~~   58 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDP-------------MTGTFRCTFC-------HTEVEEDESAMPK   58 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEET-------------TTTEEBCSSS-------CCBCEECTTCSCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcC-------------CCCCEECCCC-------CCccccCcccccc
Confidence            568999999999999999999999988887   7887             8999999999       9999887765543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=75.16  Aligned_cols=41  Identities=20%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      |+++|++++||+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            56777777777777777777777777777777 677777763

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.3e-09  Score=77.41  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=39.1

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      ..|..+++|.|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            35788899999999999999999999999998             8999999998

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.6e-10  Score=78.53  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhc-ccCCCcccccCcC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKC  145 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~-~H~~ekp~~C~~C  145 (492)
                      ++++|.|++|       ++.|.....|..|++ +|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIEC-------GKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSS-------CCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCEECCcc-------CchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5556666665       666666666666665 5666666666555

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=76.82  Aligned_cols=42  Identities=21%  Similarity=0.461  Sum_probs=31.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467777777777777777777777777777777 667777774

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.5e-09  Score=76.72  Aligned_cols=45  Identities=29%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             hCccccCCCCceecc--cccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCC
Q 011146           53 LSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (492)
                      .|.++|+++++|.|+  +|++.|.++..|..|+++|.             ++++|.|++|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            367889999999998  89999999999999999998             8999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.1e-10  Score=76.70  Aligned_cols=43  Identities=28%  Similarity=0.341  Sum_probs=40.5

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|+             ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC-------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             89999984

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.9e-10  Score=76.10  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            477778888888888888888888888888877 677788774

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1e-09  Score=75.27  Aligned_cols=41  Identities=20%  Similarity=0.498  Sum_probs=31.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      +|+++|++++||.|++|++.|.....|..|+++ ++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            367777777777777777777777777777777 67777776

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=76.88  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            467777777777777777777777777777777 667777774

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.2e-09  Score=76.52  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=30.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 667777764

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.6e-10  Score=76.24  Aligned_cols=42  Identities=21%  Similarity=0.408  Sum_probs=35.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            478888888888888888888888888888888 778888874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.9e-10  Score=77.02  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=33.9

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|.+|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888887 677888874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=76.43  Aligned_cols=42  Identities=26%  Similarity=0.561  Sum_probs=31.5

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|++++||.|++|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            477777777777777777777777777777777 667777774

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.1e-09  Score=76.75  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=30.8

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 667777764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.84  E-value=1e-09  Score=77.00  Aligned_cols=42  Identities=26%  Similarity=0.544  Sum_probs=32.4

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|++++||.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            477777778888888888888888888888777 677777774

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=5.3e-10  Score=78.51  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~  144 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            9 GEKPFKCKEC-------GKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCEECCcC-------CchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4555555554       555555555555555555555555544

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.1e-09  Score=76.89  Aligned_cols=42  Identities=26%  Similarity=0.501  Sum_probs=31.4

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            467777777777777777777777777777777 677777774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=75.73  Aligned_cols=42  Identities=24%  Similarity=0.480  Sum_probs=34.5

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888888 777888874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.9e-09  Score=74.93  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=39.9

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (492)
                      .|+++|+++++|.|++|++.|.+...|..|+++|+             ++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc-------------CCCCCCC
Confidence            58899999999999999999999999999999998             8899987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=76.47  Aligned_cols=42  Identities=26%  Similarity=0.481  Sum_probs=30.5

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            467777777777777777777777777777777 667777764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.1e-09  Score=76.72  Aligned_cols=42  Identities=26%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            477777778888888888888888888888777 677777774

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=9.9e-10  Score=77.11  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 778888885

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=76.66  Aligned_cols=42  Identities=29%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            466777777777777777777777777777766 666777664

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.3e-09  Score=76.35  Aligned_cols=42  Identities=26%  Similarity=0.453  Sum_probs=28.8

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            366667777777777777777777777777666 566677664

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.83  E-value=1e-09  Score=80.03  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             CCCCCChhHhhhCccccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           42 GTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        42 g~~~~~~~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++.|.....|..|++.|+++++|.|++|++.|.....|..|+++|+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            5678888889999999999999999999999999999999999998

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=1.9e-09  Score=74.57  Aligned_cols=42  Identities=17%  Similarity=0.320  Sum_probs=38.8

Q ss_pred             ccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        55 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .+.|+++++|.|++|++.|.++..|..|+++|+             ++++|.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            357899999999999999999999999999998             899999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1e-09  Score=77.02  Aligned_cols=42  Identities=29%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|++++||+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            577888888888888888888888888888877 677888775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.3e-09  Score=76.44  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=29.9

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            466777777777777777777777777777776 666777764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.4e-09  Score=76.29  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=31.5

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            467777777777777777777777777777777 667777774

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=1.3e-09  Score=77.33  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             ccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCcc
Q 011146           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK  147 (492)
Q Consensus        99 ~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k  147 (492)
                      +.++++|.|++|       ++.|.....|.+|+++|++++||+|++|+|
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            357889999998       999999999999999999999999999986

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.3e-09  Score=76.42  Aligned_cols=42  Identities=26%  Similarity=0.533  Sum_probs=31.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467777777777777777777777777777777 667777774

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.5e-09  Score=76.20  Aligned_cols=42  Identities=19%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|+|.+|++.|.....|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            467777777777777777777777777777777 677777774

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.3e-09  Score=76.33  Aligned_cols=42  Identities=24%  Similarity=0.472  Sum_probs=29.7

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            466777777777777777777777777777776 666777764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.7e-09  Score=75.88  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=31.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|+|++|++.|..+..|..|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467777777777777777777777777777777 677777774

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.3e-09  Score=75.58  Aligned_cols=42  Identities=19%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|++++||+|++|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            577888888888888888888888888888888 777888873

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.8e-09  Score=75.80  Aligned_cols=42  Identities=21%  Similarity=0.465  Sum_probs=31.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            367777777777777777777777777777777 667777764

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.3e-09  Score=75.66  Aligned_cols=42  Identities=19%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|.|++|++.|.....|..|+++ .+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            467777777777777777777777777777777 667777763

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.5e-09  Score=74.45  Aligned_cols=40  Identities=28%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      |+++|++++||+|++|++.|.....|..|+++ .+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            67778888888888888888888888888877 77788876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.7e-09  Score=74.22  Aligned_cols=40  Identities=25%  Similarity=0.478  Sum_probs=26.9

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      |+++|++++||.|++|++.|.....|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            56666666667776677767666666666666 56666665

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=75.93  Aligned_cols=42  Identities=29%  Similarity=0.530  Sum_probs=33.1

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|.|.+|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            477778888888888888888888888888877 677788774

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.6e-09  Score=75.90  Aligned_cols=42  Identities=29%  Similarity=0.544  Sum_probs=34.7

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|+++++|.|++|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888888 778888874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.80  E-value=2.1e-09  Score=73.66  Aligned_cols=40  Identities=15%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      |+++|++++||+|++|++.|..+..|..|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            66777777788888888888887788888777 67777776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.6e-09  Score=76.01  Aligned_cols=42  Identities=21%  Similarity=0.438  Sum_probs=34.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            477888888888888888888888888888888 777888875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.4e-09  Score=75.13  Aligned_cols=41  Identities=22%  Similarity=0.500  Sum_probs=26.3

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      |+++|+++++|.|++|++.|..+..|..|+++ ++++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            55666666666666666666666666666666 556666664

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.78  E-value=7.5e-10  Score=80.75  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             CCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCce
Q 011146          118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  167 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~  167 (492)
                      ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ ++++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45556666666666666666666666666666666666666666 555555

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.3e-09  Score=75.57  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=36.0

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|++++||.|++|++.|.....|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588888888889999999999888889988888 788888873

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.1e-09  Score=86.07  Aligned_cols=65  Identities=23%  Similarity=0.447  Sum_probs=57.9

Q ss_pred             hhHHhhhcccCCCcccccCcCccccCChHHHHHhhhhcCCCceeec-CCCccCChhHHHHHHhHhcCc
Q 011146          125 TGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHRAFCDAL  191 (492)
Q Consensus       125 s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~~  191 (492)
                      ..|..|+++|.++++|.|..|++.|. ...|..|+..++++||.|+ |++.|.+ ..|..|+++|.+.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            46889999999999999999999994 8999999933999999999 9999874 8999999998764

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.4e-09  Score=76.17  Aligned_cols=42  Identities=19%  Similarity=0.282  Sum_probs=35.5

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      +|+++|++++||.|++|++.|.....|..|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 778888885

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.5e-09  Score=76.15  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=31.2

Q ss_pred             ccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus        99 ~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      |.++++|.|++|       ++.|..+..|.+|+++|++++||+|++|
T Consensus         7 h~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVC-------HKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSS-------CCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCccc-------CcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            347778888877       8888888888888888888888888776

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.9e-09  Score=75.71  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~  143 (492)
                      ++++|.|++|       ++.|..+..|.+|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            9 GEKPYKCQVC-------GKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCcccCCCCC-------CcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            5566666665       66666666666666666666666664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.5e-09  Score=73.49  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD  170 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~  170 (492)
                      |+++|+++++|.|++|++.|.....|..|+++ ++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            66777777777777777777777777777777 667777763

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.2e-09  Score=73.79  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      .|+++|++++||+|++|++.|.....|..|+++ ++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            477888888888888888888888888888887 67788776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=4.2e-09  Score=71.83  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (492)
                      ++|+++++|.|++|++.|.+...|..|+++|+             ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            57889999999999999999999999999998             8899988

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.6e-09  Score=83.93  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=57.9

Q ss_pred             hHhhhCccccCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHH
Q 011146           49 EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK  128 (492)
Q Consensus        49 ~~l~~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~  128 (492)
                      ..|..|.+.|.++++|.|+.|++.|. ...|..|+ .|.             ++++|.|+.|       ++.|. +..|.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c-------------~~~~~~C~~C-------~~~~~-~~~l~   59 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC-------------GARTELCGNC-------GRNVL-VKDLK   59 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH-------------HHCEEECSSS-------CCEEE-TTGGG
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc-------------CCCceEcccC-------CCcCc-HHHHH
Confidence            45778988999999999999999994 88999998 787             8999999998       88877 58899


Q ss_pred             hhhcccCCCc
Q 011146          129 KHFSRKHGEK  138 (492)
Q Consensus       129 ~H~~~H~~ek  138 (492)
                      .|+++|.+++
T Consensus        60 ~H~~~c~~~~   69 (75)
T 2d9k_A           60 THPEVCGREG   69 (75)
T ss_dssp             THHHHBTTBS
T ss_pred             HHHHHccCCc
Confidence            9999888764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=3e-09  Score=74.18  Aligned_cols=41  Identities=15%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             ccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCc
Q 011146           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS  146 (492)
Q Consensus        99 ~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~  146 (492)
                      |.++++|.|++|       ++.|..+..|.+|+++|+++++|.|++||
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTT-------TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCC-------CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            347777777777       77777777777777777777777777775

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.9e-09  Score=75.58  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=28.1

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            8 EGEKPYQCSEC-------GKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCCCTTCCSSS-------CCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36677777776       7777777777777777777777777766

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=3.2e-09  Score=74.43  Aligned_cols=36  Identities=11%  Similarity=0.151  Sum_probs=21.2

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCC-CcccccC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG-EKKWKCE  143 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~-ekp~~C~  143 (492)
                      ++++|.|++|       ++.|.....|..|+++|++ ++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            9 KEKCFKCNKC-------EKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CSCCEECSSS-------CCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCCCEECcCC-------CCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5555666555       5566666666666655655 5555554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=9e-09  Score=72.14  Aligned_cols=39  Identities=28%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             hcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceee
Q 011146          131 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (492)
Q Consensus       131 ~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C  169 (492)
                      +++|+++++|+|++|++.|..+..|..|+++ ++++||.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            3445555555555555555555555555555 44555554

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=5.2e-09  Score=73.80  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             cCcccccCC--CCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcC
Q 011146          100 VRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (492)
Q Consensus       100 ~~~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C  145 (492)
                      .++++|.|+  +|       ++.|..+..|.+|+++|++++||+|.+|
T Consensus         8 ~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            8 TGEKPFACTWPGC-------GWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCCEECCSSSC-------CCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCeECCCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            377777776  66       7777777777777777777777777776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1e-08  Score=71.40  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=18.9

Q ss_pred             ccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccC
Q 011146           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (492)
Q Consensus        99 ~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~  143 (492)
                      |.++++|.|++|       ++.|..+..|..|+++|+++++|.|+
T Consensus         7 h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHC-------GKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTT-------TEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCcCccCCCC-------CCccCChHHHHHHHHHhCCCCCCCCC
Confidence            344455555554       55555555555555555555555543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=2.1e-08  Score=69.21  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~  144 (492)
                      .++++|.|++|       ++.|..+..|..|+++|++++||+|++
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNEC-------DCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSS-------CCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCCCEECCCC-------CCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46777777777       777777777777777777777777753

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.58  E-value=3.1e-08  Score=66.70  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=34.2

Q ss_pred             cCCCCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCC
Q 011146           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (492)
Q Consensus        58 h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (492)
                      |+++++|.|++|++.|.....|..|+++|+             ++++|.|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCccceec
Confidence            568899999999999999999999999998             88888763

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=3.5e-08  Score=67.13  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=25.0

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCccccc
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C  142 (492)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            6 SGQRVYECQEC-------GKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCEECSSS-------CCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCCeECCCC-------CCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            36667777776       7777777777777777777777666

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=6.8e-08  Score=63.93  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=31.0

Q ss_pred             ccccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        55 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|+++++|.|++|++.|.++..|..|+++|+
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            357899999999999999999999999999998

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.46  E-value=9.2e-08  Score=63.27  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=32.7

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |++.|+++++|+|++|++.|.+...|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            7889999999999999999999999999999997

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=1.4e-07  Score=72.24  Aligned_cols=40  Identities=25%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             ccCCCCceeccc--ccccccChhhHHHHH-HhcCCCcccccccccccCcccccCCC
Q 011146           57 SLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        57 ~h~~~k~~~C~~--Cgk~F~~~~~L~~H~-r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .++++|||+|.+  |+|.|.++.+|..|+ ++|+             ++|||.|.+
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCccccc
Confidence            467999999976  999999999999997 6898             999999976

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=1.7e-07  Score=60.93  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=29.2

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|+++++|.|++|++.|.++..|..|++.|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            3778999999999999999999999999998

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.40  E-value=1.7e-07  Score=61.06  Aligned_cols=31  Identities=26%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|+++++|.|++|++.|..+..|..|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            4788999999999999999999999999997

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=6.8e-09  Score=84.20  Aligned_cols=50  Identities=12%  Similarity=0.263  Sum_probs=32.5

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|..|.+    ...|..|.++
T Consensus        22 ~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~   71 (88)
T 1x6f_A           22 QNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKY   71 (88)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcc
Confidence            6677777776       777777777777777777777777765543    3344455444

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.37  E-value=1.9e-07  Score=61.65  Aligned_cols=32  Identities=19%  Similarity=0.456  Sum_probs=26.3

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |+++|++++||+|++|++.|.....|..|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            67788888888888888888888888888776

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.35  E-value=1.9e-07  Score=62.66  Aligned_cols=36  Identities=11%  Similarity=0.206  Sum_probs=30.2

Q ss_pred             cCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCccccc
Q 011146          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (492)
Q Consensus       100 ~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C  142 (492)
                      .++++|.|++|       ++.|.....|..|+++|++++||.|
T Consensus         2 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFC-------KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTT-------CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCC-------CcccCCHHHHHHHHHHcCCCcccee
Confidence            36788888888       8888888888888888888888876

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.1e-07  Score=61.49  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=22.3

Q ss_pred             cccCCCcccccCcCccccCChHHHHHhhhh-cCCC
Q 011146          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (492)
Q Consensus       132 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (492)
                      ++|++++||.|++|++.|.....|..|+++ ++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            456666777777777777777667766666 4444

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.32  E-value=2.5e-07  Score=59.93  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=29.5

Q ss_pred             CceecccccccccChhhHHHHHHhcCCCcccccccccccCccccc
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (492)
                      ++|.|++|++.|.....|..|+++|+             ++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE-------------LLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT-------------TTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC-------------CCCCCC
Confidence            58999999999999999999999998             788775

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=59.41  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +.|.++++|+|++|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            36788999999999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=6e-07  Score=58.89  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ..|.++++|+|++|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            46889999999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=4.6e-07  Score=59.85  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             cccCCCCceecccccccccCh-hhHHHHHHhcC
Q 011146           56 KSLMATNRFLCEICNKGFQRD-QNLQLHRRGHN   87 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~-~~L~~H~r~H~   87 (492)
                      ++|.++++|+|++|++.|.+. ..|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            468899999999999999999 99999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=5.8e-07  Score=58.81  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|.++++|+|++|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5888999999999999999999999999997

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=4.8e-07  Score=60.03  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             ccccCCCCceecccccccccChhhHHHH-HHhcC
Q 011146           55 PKSLMATNRFLCEICNKGFQRDQNLQLH-RRGHN   87 (492)
Q Consensus        55 ~~~h~~~k~~~C~~Cgk~F~~~~~L~~H-~r~H~   87 (492)
                      ++.|+++++|+|++|++.|..+..|..| ++.|+
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            3578999999999999999999999999 89997

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=6.3e-07  Score=60.58  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             ccCCCCceeccc--ccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .+.+++||+|++  |+|.|.++..|.+|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            467899999986  9999999999999999998

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=6.2e-07  Score=68.62  Aligned_cols=38  Identities=11%  Similarity=0.084  Sum_probs=25.0

Q ss_pred             cCcccccCCC--CCCCCCCCCCcccChhhHHhhh-cccCCCcccccCc
Q 011146          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHF-SRKHGEKKWKCEK  144 (492)
Q Consensus       100 ~~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~-~~H~~ekp~~C~~  144 (492)
                      .++|||+|.+  |       +++|...+.|.+|+ ++|+++|||.|..
T Consensus        23 sGEKPYkC~~~~C-------gKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGC-------FAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTC-------CCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCc-------ChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            4667777754  5       77777777777775 4577777776643

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=8.3e-07  Score=58.02  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=29.4

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|.++++|.|++|++.|.++..|..|+++|+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            5788999999999999999999999999997

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.20  E-value=6.4e-07  Score=59.49  Aligned_cols=30  Identities=27%  Similarity=0.712  Sum_probs=28.0

Q ss_pred             cCCCCceecc--cccccccChhhHHHHHHhcC
Q 011146           58 LMATNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        58 h~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+++++|.|+  .|++.|.+...|..|+++|+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            5788999999  59999999999999999998

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.20  E-value=7.8e-07  Score=57.71  Aligned_cols=27  Identities=22%  Similarity=0.529  Sum_probs=12.0

Q ss_pred             CCCcccccCcCccccCChHHHHHhhhh
Q 011146          135 HGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       135 ~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      +++++|.|.+|++.|.....|..|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHH
Confidence            344444444444444444444444444

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.19  E-value=9e-07  Score=57.54  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=9.6

Q ss_pred             CCcccChhhHHhhhcccCCCc
Q 011146          118 SRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++.|.....|..|+++|++++
T Consensus        14 ~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A           14 LSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCEESSHHHHHHHHGGGTSCC
T ss_pred             CcccCCHHHHHHHHHHcCCCC
Confidence            444444444444444444443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1.1e-06  Score=57.63  Aligned_cols=31  Identities=42%  Similarity=0.581  Sum_probs=29.1

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|.++++|.|++|++.|.....|..|+++|+
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            4678899999999999999999999999997

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.14  E-value=8.3e-07  Score=57.33  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~  141 (492)
                      +||.|++|       ++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPEC-------PKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSS-------CCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCC-------CchhCCHHHHHHHHHHhCCCCCCC
Confidence            46777777       777777777888877777777765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.13  E-value=1.1e-06  Score=62.08  Aligned_cols=31  Identities=23%  Similarity=0.518  Sum_probs=28.9

Q ss_pred             ccCCCCceecccccccccChhhHHHHHH-hcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRR-GHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~   87 (492)
                      +|+++++|.|++|+|.|.++..|..|++ +|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4789999999999999999999999999 997

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.3e-06  Score=57.90  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             cccCCCcccccCcCccccCChHHHHHh-hhh
Q 011146          132 SRKHGEKKWKCEKCSKKYAVQSDWKAH-SKI  161 (492)
Q Consensus       132 ~~H~~ekp~~C~~C~k~F~~~~~L~~H-~~~  161 (492)
                      ++|++++||+|++|++.|..+..|..| +++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            456677777777777777777777777 554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=1.8e-06  Score=52.65  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=25.1

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|.|++||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999984

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=1.4e-06  Score=53.24  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=25.0

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999884

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.02  E-value=1.8e-06  Score=57.54  Aligned_cols=27  Identities=33%  Similarity=0.720  Sum_probs=25.2

Q ss_pred             ccCCCCceecccccccccChhhHHHHH
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHR   83 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~   83 (492)
                      .+.++|||+|++|||+|.++.+|.+|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            367899999999999999999999998

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=2.4e-06  Score=56.26  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=16.8

Q ss_pred             ccCCCcccccCcCccccCCh-HHHHHhhhh
Q 011146          133 RKHGEKKWKCEKCSKKYAVQ-SDWKAHSKI  161 (492)
Q Consensus       133 ~H~~ekp~~C~~C~k~F~~~-~~L~~H~~~  161 (492)
                      +|++++||+|++|++.|... ..|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            45555566666666666555 555555555

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.01  E-value=1.6e-06  Score=57.90  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=14.5

Q ss_pred             CCCcccccCcCccccCChHHHHHhh
Q 011146          135 HGEKKWKCEKCSKKYAVQSDWKAHS  159 (492)
Q Consensus       135 ~~ekp~~C~~C~k~F~~~~~L~~H~  159 (492)
                      .+||||+|++|+|.|..++.|++|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4555555555555555555555555

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.00  E-value=2.7e-07  Score=59.25  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=24.8

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|+|.|.+...|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            57999999999999999999999998

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.99  E-value=3.5e-06  Score=64.27  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=29.9

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ..+.++|+|+|++|+|.|.++..|..|+++|+
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            35788999999999999999999999999998

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=3.5e-06  Score=55.07  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=13.8

Q ss_pred             cCCCcccccCcCccccCChHHHHHhhhh
Q 011146          134 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       134 H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |++++||+|.+|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            4444455555555555555555544444

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.98  E-value=2e-06  Score=60.43  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             hCccccCCCCceecc--cccccccChhhHHHHHHhcC
Q 011146           53 LSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|...|+++++|.|+  .|+|.|.++..|..|+++|+
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            445669999999996  79999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=3.9e-06  Score=54.68  Aligned_cols=28  Identities=25%  Similarity=0.536  Sum_probs=14.2

Q ss_pred             cCCCcccccCcCccccCChHHHHHhhhh
Q 011146          134 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       134 H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |++++||+|.+|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            4445555555555555555555555444

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.97  E-value=3.3e-06  Score=55.82  Aligned_cols=31  Identities=26%  Similarity=0.545  Sum_probs=28.6

Q ss_pred             ccCCCCceeccc--ccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|+++++|.|++  |+|.|.++..|..|+++|+
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            477899999995  9999999999999999997

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.96  E-value=1.2e-06  Score=56.13  Aligned_cols=31  Identities=13%  Similarity=0.228  Sum_probs=27.0

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCccc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKW  140 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~  140 (492)
                      +||.|++|       ++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            47889888       89999999999999999988886

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=4.1e-06  Score=51.80  Aligned_cols=27  Identities=19%  Similarity=0.549  Sum_probs=25.6

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|.|++|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            478999999999999999999999997

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.94  E-value=2.7e-06  Score=56.34  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             CcccccCC--CCCCCCCCCCCcccChhhHHhhhcccCCCccc
Q 011146          101 RKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKW  140 (492)
Q Consensus       101 ~~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~  140 (492)
                      ++++|.|+  .|       ++.|...+.|.+|+++|+++++|
T Consensus         3 ~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGC-------GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTT-------CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCC-------CcccCCHHHHHHHHHHhCCCCCC
Confidence            56677777  36       77777777777777777776665

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.94  E-value=4e-06  Score=51.63  Aligned_cols=26  Identities=38%  Similarity=0.685  Sum_probs=24.8

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            58999999999999999999999997

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.93  E-value=3.8e-06  Score=51.43  Aligned_cols=27  Identities=26%  Similarity=0.659  Sum_probs=25.2

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999986

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=3.9e-06  Score=56.62  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=19.1

Q ss_pred             CcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       101 ~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      +++||.|++  |       ++.|..++.|++|+++|+++
T Consensus         6 gekp~~C~~~~C-------~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            6 SGILLKCPTDGC-------DYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCCEECSSSSC-------CCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            566666654  5       66666666666666666654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.91  E-value=5.3e-06  Score=50.99  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=24.7

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.10  E-value=1.8e-06  Score=52.15  Aligned_cols=26  Identities=35%  Similarity=0.742  Sum_probs=23.9

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+|.|++||+.|.+...|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999884

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=6e-06  Score=53.90  Aligned_cols=30  Identities=13%  Similarity=0.176  Sum_probs=18.5

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            6 SGLLYDCHIC-------ERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHhcCC
Confidence            5566666665       66666666666666666554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.86  E-value=3.2e-06  Score=59.33  Aligned_cols=38  Identities=13%  Similarity=0.407  Sum_probs=25.9

Q ss_pred             HHhhhcccCCCcccccC--cCccccCChHHHHHhhhh-cCC
Q 011146          127 IKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGT  164 (492)
Q Consensus       127 L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~  164 (492)
                      +..|...|++++||+|+  .|++.|..+..|+.|+++ +++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            34455667777777775  577777777777777776 443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.86  E-value=7e-06  Score=50.68  Aligned_cols=26  Identities=19%  Similarity=0.476  Sum_probs=24.7

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            57999999999999999999999997

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=7.9e-06  Score=53.19  Aligned_cols=30  Identities=13%  Similarity=0.183  Sum_probs=17.8

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMC-------GKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCeecCcC-------CCCcCchHHHHHHHHHhcCC
Confidence            5556666665       66666666666666665554

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=6.9e-06  Score=50.37  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=24.7

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            57999999999999999999999997

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=7.1e-06  Score=50.22  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=24.7

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999997

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.80  E-value=1.4e-05  Score=60.84  Aligned_cols=30  Identities=10%  Similarity=0.205  Sum_probs=14.5

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++|||.|++|       ++.|..+..|++|+++|+++
T Consensus        10 ~ekpy~C~~C-------gK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A           10 EAGILPCGLC-------GKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCTTT-------CCCCSCHHHHHHHHHHHTTT
T ss_pred             CccCcCCCCC-------CCccCCHHHHHhhhhhhCCC
Confidence            4444444444       44444444444444444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.00  E-value=2.9e-06  Score=52.47  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=24.6

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            57999999999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=52.54  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=25.3

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            468999999999999999999999997

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.79  E-value=1.2e-05  Score=50.87  Aligned_cols=27  Identities=30%  Similarity=0.786  Sum_probs=25.4

Q ss_pred             CCceecc--cccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +++|.|+  .|++.|.+...|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4789999  89999999999999999997

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=9.4e-06  Score=52.95  Aligned_cols=30  Identities=13%  Similarity=0.298  Sum_probs=18.4

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYC-------NKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCEECCCC-------CceeCCHHHHHHHHHHhCCC
Confidence            5566666665       66666666666666666554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.75  E-value=1.3e-05  Score=50.42  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.6

Q ss_pred             Cceecc--cccccccChhhHHHHHHhcC
Q 011146           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|+  +|++.|.+...|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            589998  99999999999999999997

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.71  E-value=1.3e-05  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.743  Sum_probs=23.1

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|+|++|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999996

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=1.8e-05  Score=48.70  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         2 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYC-------GRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHHhccCC
Confidence            56777776       777777777777777776653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.64  E-value=1.6e-05  Score=52.36  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=17.4

Q ss_pred             CcccccCCC--CCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       101 ~~k~y~C~~--C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++++|.|++  |       ++.|...+.|.+|+++|+++
T Consensus         5 ~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            5 KKKQHICHIQGC-------GKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SCCCEECCSTTC-------CCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            555666653  4       66666666666666665554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.64  E-value=2e-05  Score=48.34  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=20.6

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPEC-------PKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSS-------SCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCC-------CchhCCHHHHHHHHHHhcCCC
Confidence            46777776       777777777777777776653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.64  E-value=2.1e-05  Score=55.39  Aligned_cols=31  Identities=23%  Similarity=0.472  Sum_probs=18.2

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhc-ccCCCc
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEK  138 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~-~H~~ek  138 (492)
                      ++++|.|++|       ++.|..+..|..|++ +|+++.
T Consensus         4 ~~kp~~C~~C-------~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            4 RDKPYACDIC-------GKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             TTSCEECTTT-------CCEESSHHHHHHHHHHSSCC--
T ss_pred             CCcCEECCCc-------CcccCCHHHHHHHhhhhcCCCC
Confidence            5666666665       666666666666666 565543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.62  E-value=1.9e-05  Score=48.91  Aligned_cols=26  Identities=31%  Similarity=0.742  Sum_probs=24.1

Q ss_pred             CceecccccccccChhhHHHH-HHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLH-RRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H-~r~H~   87 (492)
                      ++|.|++|++.|.+...|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            579999999999999999999 68887

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.60  E-value=2.6e-05  Score=47.69  Aligned_cols=28  Identities=21%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++|.|++|       ++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTT-------CCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCC-------CcccCCHHHHHHHHHHhcCC
Confidence            35667666       77777777777777766655

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.60  E-value=3.5e-05  Score=48.63  Aligned_cols=30  Identities=13%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             cccccCC--CCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          102 KKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       102 ~k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      +++|.|+  .|       ++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGC-------DKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTC-------CCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            3567777  56       777777777777777777654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.59  E-value=3.5e-05  Score=48.25  Aligned_cols=29  Identities=17%  Similarity=0.435  Sum_probs=21.8

Q ss_pred             ccccCC--CCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~--~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      +||.|+  +|       ++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYC-------GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-------CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCC-------CcccCCHhHHHHHHHHhcCCC
Confidence            467776  66       888888888888888887764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.58  E-value=3.9e-05  Score=46.38  Aligned_cols=24  Identities=13%  Similarity=0.315  Sum_probs=12.5

Q ss_pred             Cceeec-CCCccCChhHHHHHHhHh
Q 011146          165 REYRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       165 kp~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      +||.|+ |++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            445555 555555555555555444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.54  E-value=3.1e-05  Score=47.62  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      +|.|++|       ++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYC-------EFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSS-------SCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCC-------CCccCCHHHHHHHHHHHccCC
Confidence            5666666       666666666666766666654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.51  E-value=4.2e-05  Score=46.73  Aligned_cols=26  Identities=23%  Similarity=0.668  Sum_probs=24.4

Q ss_pred             Cceecc--cccccccChhhHHHHHHhcC
Q 011146           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++|.|+  +|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            579999  99999999999999999986

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.51  E-value=2.8e-05  Score=47.49  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=18.4

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..|+++|+++|
T Consensus         1 ~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCREC-------GKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTT-------SCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCC-------CCccCChhHHHHHHHHhcCCC
Confidence            35666666       666666666666666666553

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.50  E-value=3e-05  Score=47.25  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHC-------DKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSC-------CCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCC-------CcccCCHHHHHHHHHHhccCC
Confidence            35666666       677777777777777666653

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.64  E-value=1.4e-05  Score=49.19  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMC-------GKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            46777777       777777777777777777653

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.61  E-value=1.6e-05  Score=49.09  Aligned_cols=29  Identities=31%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..|+++|+++|
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHC-------QRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            56777776       777777777777777776653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.45  E-value=5.5e-05  Score=45.99  Aligned_cols=26  Identities=12%  Similarity=0.317  Sum_probs=15.1

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      ++|.|++|       ++.|.....|..|+++|+
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVC-------GKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSS-------CCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHhcC
Confidence            45556555       566666666666655554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.40  E-value=8.3e-05  Score=44.65  Aligned_cols=26  Identities=15%  Similarity=0.334  Sum_probs=16.9

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      +|.|++|       ++.|.....|..|+++|++
T Consensus         1 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLC-------ERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSS-------CCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCC-------CCcCCCHHHHHHHHHHcCC
Confidence            4666666       6777777777777766654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.39  E-value=8.6e-05  Score=45.74  Aligned_cols=29  Identities=24%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhh-hcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKH-FSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H-~~~H~~ek  138 (492)
                      ++|.|++|       ++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLC-------NRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTT-------CCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCccc-------CcccCChHHHHHHHHHHccCCC
Confidence            36777777       7777777777777 56776653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.34  E-value=5.5e-05  Score=45.88  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=11.8

Q ss_pred             cccccCcCccccCChHHHHHhhh
Q 011146          138 KKWKCEKCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~  160 (492)
                      +||+|++|++.|.....|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            44555555555555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00025  Score=53.49  Aligned_cols=49  Identities=12%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             CCCCCCCCcccChhhHHhhhc-ccCCCc------ccccC--cCccccCChHHHHHhhh
Q 011146          112 CVHHDPSRALGDLTGIKKHFS-RKHGEK------KWKCE--KCSKKYAVQSDWKAHSK  160 (492)
Q Consensus       112 C~~~~c~k~f~~~s~L~~H~~-~H~~ek------p~~C~--~C~k~F~~~~~L~~H~~  160 (492)
                      |.|..|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++
T Consensus         4 C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir   61 (64)
T 1zw8_A            4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN   61 (64)
T ss_dssp             CCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHH
T ss_pred             EeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcc
Confidence            344455888888888888874 576554      44443  44444444444444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.20  E-value=7e-05  Score=44.76  Aligned_cols=24  Identities=13%  Similarity=0.409  Sum_probs=13.6

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhccc
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      ||.|++|       ++.|.....|..|+++|
T Consensus         2 p~~C~~C-------~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERC-------GKRFVQSSQLANHIRHH   25 (26)
Confidence            4555555       55555555555555554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.99  E-value=0.00033  Score=60.39  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             CCceecccccccccChhhHHHHH--HhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHR--RGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~--r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      .+++.|.+|+..|.....+..|.  +.|..            ..+.|.+. ++......++.|...    .+...+.+.+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~------------~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~   92 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHAN------------KVRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDR   92 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHH------------HHHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHH------------HHHHHhcc-cCcccCCCCCccCCC----ccccccCCCC
Confidence            35799999999999999999998  66751            11333331 111101113333221    1334456677


Q ss_pred             ccccCcCccccCChHHHHHhhhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      .|.|.+|++.|.+...|..|...
T Consensus        93 ~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           93 SKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTS
T ss_pred             CeEcCCCCCEeCCHHHHHHHHCC
Confidence            78888888888888888888753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0009  Score=50.37  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=41.8

Q ss_pred             ccccccccChhhHHHHH-HhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146           67 EICNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus        67 ~~Cgk~F~~~~~L~~H~-r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      ..|++.|.+...|..|+ +.|.+...       .....+|.|..=+|     ++.+.....|..|++.++
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~-------~~~~~~~~C~W~~C-----~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDF-------KHPMEPLACNWEDC-----DFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCC-------CCSSCCEECCCSSC-----CCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCccc-------CCCCCCCEeeCCCC-----cCCCCChHHHHhhccccC
Confidence            45999999999999998 57862100       00123788875444     999999999999998753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.82  E-value=0.00037  Score=42.25  Aligned_cols=18  Identities=17%  Similarity=0.313  Sum_probs=10.0

Q ss_pred             CCcccChhhHHhhhcccC
Q 011146          118 SRALGDLTGIKKHFSRKH  135 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~  135 (492)
                      ++.|...+.|..|+++|+
T Consensus        11 ~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A           11 GRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEESSHHHHHHHHGGGT
T ss_pred             cCccCCHHHHHHHHHHhC
Confidence            555555555555555554

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.47  E-value=0.0042  Score=52.87  Aligned_cols=31  Identities=16%  Similarity=0.334  Sum_probs=24.3

Q ss_pred             hcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          131 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       131 ~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      -..|+|+++|.|..|++.|.+...|..|+++
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3457788888888888888888888888765

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.43  E-value=0.003  Score=53.80  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhc
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      .-..|+++++|.|.+|+|.|.+...|..|++..
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            445688999999999999999999999998654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.99  E-value=0.014  Score=52.49  Aligned_cols=84  Identities=19%  Similarity=0.442  Sum_probs=59.2

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh-cCCCceeec-CCCccCChh
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKD  179 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~~~~  179 (492)
                      +....|+.-+|     +..+. ...|..|+. .=..++..|+.|+..+ .+..|..|+.. ...+...|. |+..|.. .
T Consensus        80 ~l~v~C~n~GC-----~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~  150 (170)
T 3hcs_A           80 SLMVKCPNEGC-----LHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-E  150 (170)
T ss_dssp             TSEEECCSTTC-----CCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-G
T ss_pred             hcccCCCCCCC-----Cceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-H
Confidence            34556753333     66543 567788873 3345778999999988 56789999976 888999999 9998855 5


Q ss_pred             HHHHHHhHhcCcccc
Q 011146          180 SFITHRAFCDALAEE  194 (492)
Q Consensus       180 ~L~~H~~~h~~~~~~  194 (492)
                      .|..|..++.+..+.
T Consensus       151 ~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          151 DKEIHDQNCPLALEH  165 (170)
T ss_dssp             GHHHHHTTCCC----
T ss_pred             HHHhHHHhCcChhhh
Confidence            679999988776543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.95  E-value=0.0042  Score=53.36  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhh--cccCCC-cccccCcC------ccccCChHHHHHhhhh-cCCCceeec-
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHF--SRKHGE-KKWKCEKC------SKKYAVQSDWKAHSKI-CGTREYRCD-  170 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~--~~H~~e-kp~~C~~C------~k~F~~~~~L~~H~~~-~~~kp~~C~-  170 (492)
                      .+++.|.+|       ...|.+.+.+..|.  +.|... +.|.+..+      ++.|....    +... .+.+.|.|+ 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCC
Confidence            467899999       99999999999999  566542 45555211      22332211    2222 456789999 


Q ss_pred             CCCccCChhHHHHHHh
Q 011146          171 CGTLFSRKDSFITHRA  186 (492)
Q Consensus       171 C~k~F~~~~~L~~H~~  186 (492)
                      |++.|.+...|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.16  E-value=0.03  Score=38.75  Aligned_cols=23  Identities=17%  Similarity=0.518  Sum_probs=12.1

Q ss_pred             ccccCcCccccCChHHHHHhhhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      +|.|+.|++.|.....|++|++.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhhh
Confidence            35555555555555555555543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.89  E-value=0.026  Score=50.58  Aligned_cols=136  Identities=15%  Similarity=0.215  Sum_probs=84.6

Q ss_pred             CCCCCCCCCCCCCcCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCChhHhhh-CccccCCCCceec--ccccc
Q 011146            5 DHGLSVPSTLKGFVQEPNSNPNPNPSS----------NQLKRKRNLPGTPDPDAEVIAL-SPKSLMATNRFLC--EICNK   71 (492)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~c~~cg~~~~~~~~l~~-h~~~h~~~k~~~C--~~Cgk   71 (492)
                      ++.|.|++|...+.....+   +--|.          .....+|.+|+..+.....+.. -.+.........|  .-|+.
T Consensus        16 ~~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~   92 (170)
T 3hcs_A           16 ESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLH   92 (170)
T ss_dssp             CGGGBCTTTCSBCSSEEEC---TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCC
T ss_pred             CCCCCCCCCChhhcCcEEC---CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCc
Confidence            3468999998776543211   11110          0113489999887765322110 0111223455778  46887


Q ss_pred             cccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCC
Q 011146           72 GFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV  151 (492)
Q Consensus        72 ~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~  151 (492)
                      .+.. ..|..|...=              .-++..|+.|       +..+ .+..|..|+...-..++-.|..|+..|..
T Consensus        93 ~~~~-~~l~~H~~~C--------------~~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~  149 (170)
T 3hcs_A           93 KMEL-RHLEDHQAHC--------------EFALMDCPQC-------QRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF  149 (170)
T ss_dssp             EEEG-GGHHHHHTTC--------------TTSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG
T ss_pred             eecH-hHHHHHHhcC--------------CceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH
Confidence            7654 4677786422              4567889876       8877 56779999988888899999999998765


Q ss_pred             hHHHHHhhhh-cCCCce
Q 011146          152 QSDWKAHSKI-CGTREY  167 (492)
Q Consensus       152 ~~~L~~H~~~-~~~kp~  167 (492)
                       ..|..|..+ .|+.++
T Consensus       150 -~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          150 -EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             -GGHHHHHTTCCC----
T ss_pred             -HHHHhHHHhCcChhhh
Confidence             578999988 666544

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.36  E-value=0.038  Score=38.29  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.5

Q ss_pred             CceecccccccccChhhHHHHHHhc
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      .+|.|+.|++.|.....|+.||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            5799999999999999999999743

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=82.18  E-value=0.26  Score=37.66  Aligned_cols=37  Identities=35%  Similarity=0.787  Sum_probs=17.1

Q ss_pred             cccc-CcCccccCChHHHHHhhhh-cCCCceeec-CCCccC
Q 011146          139 KWKC-EKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFS  176 (492)
Q Consensus       139 p~~C-~~C~k~F~~~~~L~~H~~~-~~~kp~~C~-C~k~F~  176 (492)
                      +..| ..|+..+.+ ..|..|+.. ...++..|. |+..|.
T Consensus        16 ~v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~   55 (76)
T 2yuc_A           16 VIPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFS   55 (76)
T ss_dssp             CCBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCC
T ss_pred             ccCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCCCccC
Confidence            3444 345544432 344555443 444455555 555443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.26  E-value=0.99  Score=29.13  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.7

Q ss_pred             ceecccccccccChhhHHHHH-HhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHR-RGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~-r~H~   87 (492)
                      -|.|++|-+.|.....|..|. ..|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            499999999999999999995 4554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	6e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.004

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 137 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYRC--DCGTLFSRKDSFITHR 185
           +K + C+ C K +  +S    H  +           CG  F  K   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.003
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE 166
           R H GEK ++C  C  ++      K H     T  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.004
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 137 EKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YRCD 170
            K + C+ C K ++       H K   T E  ++C 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.45
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.4
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.99
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.92
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.9
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.89
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.88
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.86
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.84
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.81
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.74
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.74
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.73
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.7
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.67
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.65
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.65
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.63
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.62
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.61
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.58
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.5
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.48
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.42
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.36
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.33
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.33
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.25
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.23
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.23
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.22
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.2
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.19
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.15
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.12
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.95
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.84
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.64
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.52
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.4
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.31
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.14
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.05
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.03
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.0
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.88
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.87
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.79
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.7
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.55
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.53
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.49
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.48
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.43
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.29
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.25
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.24
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.11
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.1
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.06
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.93
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.88
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.8
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.8
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.78
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.72
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.69
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.55
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.51
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.43
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.14
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.14
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.06
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.88
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.63
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.27
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.53
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.51
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.24
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.92
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.86
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.86
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.81
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.26
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.03
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.39
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.22
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.08
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.05
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.14
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.48
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.17
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.16
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	81.96
d1y0jb1	36	U-shaped transcription factor, different fingers {	81.68
d1y0jb1	36	U-shaped transcription factor, different fingers {	81.4
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	81.32
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	80.95
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	80.91

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-14  Score=104.00  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             CCceecccccccccChhhHHHHHHhcCCCcccccccccccCcccccCCCCCCCCCCCCCcccChhhHHhhhccc
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      ||+|+|+ |||.|..+..|..|+++|+             +++||.|++|       +++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            4677774 7777777777777777776             7777777777       77777777777777765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-14  Score=102.14  Aligned_cols=52  Identities=25%  Similarity=0.544  Sum_probs=38.1

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCcCccccCChHHHHHhhhh
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ||+|.|+ |       |+.|..+..|..|+++|++++||.|.+|++.|.....|..|+++
T Consensus         1 EK~y~C~-C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPCQ-C-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEECT-T-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CcCCCCC-C-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            4677773 6       77777777777777777777777777777777777777777664

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.8e-11  Score=79.85  Aligned_cols=37  Identities=27%  Similarity=0.631  Sum_probs=34.0

Q ss_pred             CCCceecccccccccChhhHHHHHH-hcCCCcccccccccccCcccccCCC
Q 011146           60 ATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        60 ~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      .+|||+|++|||.|.+..+|.+|++ +|+             ++|||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            4789999999999999999999976 798             999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.6e-11  Score=78.05  Aligned_cols=35  Identities=31%  Similarity=0.584  Sum_probs=34.1

Q ss_pred             hCccccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        53 ~h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|+++|+++|||+|++|||+|...++|..|+|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            68999999999999999999999999999999998

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.9e-10  Score=76.44  Aligned_cols=37  Identities=22%  Similarity=0.440  Sum_probs=32.5

Q ss_pred             CcccccCCCCCCCCCCCCCcccChhhHHhhhc-ccCCCcccccCc
Q 011146          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK  144 (492)
Q Consensus       101 ~~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~-~H~~ekp~~C~~  144 (492)
                      .+|||.|++|       |+.|...+.|++|++ +|++||||+|++
T Consensus         2 ~~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999998       999999999999986 699999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.5e-10  Score=75.29  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=32.8

Q ss_pred             CccccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        54 h~~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |.|.|+++|||+|++|+|+|.++.+|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            7899999999999999999999999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.8e-10  Score=75.53  Aligned_cols=36  Identities=22%  Similarity=0.612  Sum_probs=29.4

Q ss_pred             hhhcccCCCcccccCcCccccCChHHHHHhhhh-cCC
Q 011146          129 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (492)
Q Consensus       129 ~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (492)
                      +|+++|+++|||+|++|||.|...+.|..|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            578888888888888888888888888888887 554

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.8e-10  Score=72.07  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             ccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        57 ~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|+++|||+|++|||+|.++..|..|+|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999999998

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.9e-10  Score=73.30  Aligned_cols=32  Identities=22%  Similarity=0.549  Sum_probs=31.0

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+|+++|||+|++|||+|.++..|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            57999999999999999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=4.8e-10  Score=73.84  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=28.0

Q ss_pred             hhcccCCCcccccCcCccccCChHHHHHhhhhc
Q 011146          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKIC  162 (492)
Q Consensus       130 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~  162 (492)
                      |.|+|+|||||+|++|++.|..++.|+.|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            778888888888888888888888888888763

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=6.3e-10  Score=71.97  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=29.2

Q ss_pred             cCCCCceecccccccccChhhHHHHHHhcC
Q 011146           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        58 h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+++|||+|++|+|.|.++.+|+.|+|+|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            789999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.1e-10  Score=71.99  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=23.4

Q ss_pred             cccCCCcccccCcCccccCChHHHHHhhhhc
Q 011146          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKIC  162 (492)
Q Consensus       132 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~  162 (492)
                      |+|+|||||+|.+|++.|..++.|..|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            4677777777777777777777777777773

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2e-09  Score=70.24  Aligned_cols=32  Identities=16%  Similarity=0.474  Sum_probs=29.1

Q ss_pred             cccCCCCceecccccccccChhhHHHHHHhcC
Q 011146           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        56 ~~h~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+|+++|||+|++|+|.|.++.+|+.|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            57999999999999999999999999976544

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.1e-09  Score=70.13  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=25.2

Q ss_pred             cccCCCcccccCcCccccCChHHHHHhhhh-cCC
Q 011146          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (492)
Q Consensus       132 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (492)
                      |+|+|||||+|++|++.|..+..|++|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            568888888888888888888888888765 543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.3e-09  Score=68.33  Aligned_cols=28  Identities=29%  Similarity=0.642  Sum_probs=15.2

Q ss_pred             cCCCcccccCcCccccCChHHHHHhhhh
Q 011146          134 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       134 H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |++||||+|.+|++.|..++.|..|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            4555555555555555555555555555

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.8e-09  Score=66.06  Aligned_cols=27  Identities=37%  Similarity=0.796  Sum_probs=26.1

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ||||+|++|+|.|.++.+|.+|+|+|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999997

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.70  E-value=3e-09  Score=65.84  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=25.3

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||.|++|+|.|.++.+|++|+|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=4.9e-09  Score=67.71  Aligned_cols=28  Identities=18%  Similarity=0.587  Sum_probs=13.5

Q ss_pred             cCCCcccccCcCccccCChHHHHHhhhh
Q 011146          134 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       134 H~~ekp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |+|||||+|.+|+|.|..+..|++|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc
Confidence            3444444444444444444444444444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.7e-09  Score=63.15  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=24.8

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||+|++|||+|.+++.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.8e-09  Score=64.81  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=25.3

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||.|++|||.|.++++|.+|+|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.6e-09  Score=68.37  Aligned_cols=35  Identities=23%  Similarity=0.636  Sum_probs=30.5

Q ss_pred             ccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccccCc
Q 011146          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (492)
Q Consensus       105 y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~C~~  144 (492)
                      |.|++-+|     +++|..++.|++|+++|+|||||+|+.
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67777544     999999999999999999999999974

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=4.1e-09  Score=72.99  Aligned_cols=39  Identities=31%  Similarity=0.456  Sum_probs=35.5

Q ss_pred             hhHhhhCccccCCCCceeccc--ccccccChhhHHHHHHhcC
Q 011146           48 AEVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        48 ~~~l~~h~~~h~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++.|..|++ |++++||.|++  |+|.|.++.+|+.|+++|+
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            456778885 99999999988  9999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.8e-09  Score=67.54  Aligned_cols=33  Identities=33%  Similarity=0.678  Sum_probs=31.0

Q ss_pred             eeccc--ccccccChhhHHHHHHhcCCCcccccccccccCcccccCCC
Q 011146           64 FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (492)
Q Consensus        64 ~~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (492)
                      |.|++  |+|.|.++.+|++|+++|+             ++|||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            88987  9999999999999999998             999999974

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.58  E-value=1.2e-08  Score=63.09  Aligned_cols=29  Identities=24%  Similarity=0.584  Sum_probs=24.2

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      |||.|++|       +++|...+.|++|+++|+|||
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            57888888       888888888888888888875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=9.6e-09  Score=71.09  Aligned_cols=39  Identities=21%  Similarity=0.436  Sum_probs=26.2

Q ss_pred             hHHhhhcccCCCcccccCc--CccccCChHHHHHhhhh-cCCC
Q 011146          126 GIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTR  165 (492)
Q Consensus       126 ~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~~~k  165 (492)
                      .|.+|++ |++||||+|++  |++.|.+++.|+.|+++ +|+|
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4555664 77777777766  77777777777777776 5553

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.4e-08  Score=61.54  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=23.6

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      |||.|++|       +++|..++.|.+|+++|+|||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            57888887       888888888888888888875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=2.7e-08  Score=60.74  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=16.3

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      ||||+|++|       +++|..++.|.+|+++|+|
T Consensus         1 EKPy~C~~C-------~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRIC-------MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCC-------cCEecccccccccCCCccC
Confidence            355666655       5666666666666665554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.6e-08  Score=59.42  Aligned_cols=26  Identities=35%  Similarity=0.726  Sum_probs=25.1

Q ss_pred             Cceeccc--ccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||+|++  |+|.|.++.+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6899999  9999999999999999998

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-07  Score=59.18  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=26.4

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      |||.|++-+|     +++|...++|++|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5888976544     999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=8.5e-08  Score=59.52  Aligned_cols=26  Identities=42%  Similarity=0.738  Sum_probs=24.9

Q ss_pred             Cceeccc--ccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||+|++  |+|+|.++.+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6899988  9999999999999999997

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.1e-07  Score=57.66  Aligned_cols=30  Identities=27%  Similarity=0.557  Sum_probs=24.4

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      |||+|++-+|     +++|..++.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            5788888444     88888888888888888886

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.5e-07  Score=55.04  Aligned_cols=24  Identities=33%  Similarity=0.870  Sum_probs=15.1

Q ss_pred             Cceeec-CCCccCChhHHHHHHhHh
Q 011146          165 REYRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       165 kp~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      |||+|. |||.|.+++.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            466665 666666666666666665

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=2.4e-07  Score=58.21  Aligned_cols=27  Identities=30%  Similarity=0.815  Sum_probs=25.9

Q ss_pred             CCceeccc--ccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ||||.|++  |+|.|.+..+|++|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            68999998  9999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.7e-07  Score=58.17  Aligned_cols=30  Identities=17%  Similarity=0.437  Sum_probs=23.9

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      |||+|++-+|     +++|...+.|++|+|+|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            5788877444     88888888888888888876

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.8e-07  Score=57.62  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.4

Q ss_pred             Cceecc--cccccccChhhHHHHHHhcC
Q 011146           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||.|+  .|+|.|.+..+|++|+|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            689996  59999999999999999998

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.9e-07  Score=56.70  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=24.6

Q ss_pred             Cceeccc--ccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||+|++  |||+|.+..+|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998  9999999999999999995

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.6e-07  Score=51.84  Aligned_cols=25  Identities=40%  Similarity=0.800  Sum_probs=23.7

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |++|++|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5799999999999999999999996

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=6.1e-07  Score=52.61  Aligned_cols=27  Identities=30%  Similarity=0.682  Sum_probs=25.6

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=3.7e-07  Score=56.02  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=24.8

Q ss_pred             Cceeccc--ccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||+|++  |+|.|.+..+|++|+|+|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6899988  9999999999999999996

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=7.3e-07  Score=54.65  Aligned_cols=29  Identities=28%  Similarity=0.715  Sum_probs=23.1

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      |||+|++.+|     +++|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            5788887655     8888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=2.3e-06  Score=53.67  Aligned_cols=30  Identities=17%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      +|||.|++-+|     +++|...++|++|+++|+.
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccC
Confidence            46777777444     7777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.2e-06  Score=49.52  Aligned_cols=25  Identities=32%  Similarity=0.747  Sum_probs=13.7

Q ss_pred             CCceeec-CCCccCChhHHHHHHhHh
Q 011146          164 TREYRCD-CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       164 ~kp~~C~-C~k~F~~~~~L~~H~~~h  188 (492)
                      ||||.|+ ||+.|.+.+..++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            3555555 555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.2e-06  Score=51.39  Aligned_cols=32  Identities=34%  Similarity=0.621  Sum_probs=29.1

Q ss_pred             CceecccccccccChhhHHHHHHhcCCCcccccccccccCccccc
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (492)
                      |...|++|||.|.....|.+|...|.             ++|||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs-------------~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC-------------CCCCCC
Confidence            55789999999999999999999998             899883

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.3e-06  Score=51.78  Aligned_cols=28  Identities=25%  Similarity=0.683  Sum_probs=21.8

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      |||.|++-+|     +|+|...++|++|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            5788887555     888888888888888875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.2e-05  Score=45.52  Aligned_cols=19  Identities=16%  Similarity=0.364  Sum_probs=11.6

Q ss_pred             CCcccChhhHHhhhcccCC
Q 011146          118 SRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~  136 (492)
                      ++.|.++..|+.|+|.|+|
T Consensus         8 ~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           8 GKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             TBCCCCHHHHHHHGGGCCC
T ss_pred             hhHhcchhHHHHHhhccCC
Confidence            6666666666666666653

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.5e-05  Score=47.28  Aligned_cols=27  Identities=26%  Similarity=0.752  Sum_probs=25.8

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|||.|++|+..|+++..+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            689999999999999999999999996

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.9e-05  Score=46.81  Aligned_cols=29  Identities=31%  Similarity=0.737  Sum_probs=24.5

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      |||.|.+.+|     ++++.+.+.|++|++.++|
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5888988877     8999999999999987764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.3e-05  Score=47.56  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCcccc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ekp~~  141 (492)
                      |...|++|       |+.|.+..+|.+|...|.+||||.
T Consensus         4 k~~~ce~c-------gk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCCC
Confidence            45678888       999999999999999999999873

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4e-05  Score=44.66  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=25.0

Q ss_pred             ccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       105 y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      |.|++|       +......+-|++|+|.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            889998       999999999999999999885

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.3e-05  Score=43.68  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=23.5

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .+.|.+|||.|...+.|++|..+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4789999999999999999999997

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=7.8e-05  Score=43.18  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      ++||+|.+|       .+.-...+.|..|+|.|+|+
T Consensus         1 erpfkcqlc-------sy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQIC-------PYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSS-------SCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeec-------ccccCCchheEEeeecccCc
Confidence            467777777       77777777777777777763

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.1e-05  Score=44.08  Aligned_cols=27  Identities=37%  Similarity=0.704  Sum_probs=17.6

Q ss_pred             CCceeec-CCCccCChhHHHHHHhHhcC
Q 011146          164 TREYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       164 ~kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      +|||.|. |..+|.+++.+..|.+.|.+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4566666 66666666666666666654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00014  Score=43.10  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=19.4

Q ss_pred             Cceeec---CCCccCChhHHHHHHhHhcC
Q 011146          165 REYRCD---CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       165 kp~~C~---C~k~F~~~~~L~~H~~~h~~  190 (492)
                      |||.|.   |+|+|...++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            577774   88888888888888877653

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00018  Score=41.32  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=24.9

Q ss_pred             CceecccccccccChhhHHHHHHhcC
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |||+|..|.......+.|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999995

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00016  Score=40.99  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=22.2

Q ss_pred             ecccccccccChhhHHHHHHhcC
Q 011146           65 LCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|+.|.|+|..+..|+.|-|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            69999999999999999999998

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00019  Score=41.50  Aligned_cols=27  Identities=30%  Similarity=0.642  Sum_probs=25.7

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      ++||+|..|...-...+.|..|+|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            589999999999999999999999997

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00029  Score=40.52  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      .+.|.+|       |++|...+.|++|...|+||
T Consensus         2 ~hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            3567777       88888888888888888875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00034  Score=40.69  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=23.8

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +|.|++||..-...+-|+.|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999998

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00035  Score=44.67  Aligned_cols=29  Identities=34%  Similarity=0.811  Sum_probs=23.1

Q ss_pred             cCCCceeec-CCCccCChhHHHHHHhHhcC
Q 011146          162 CGTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       162 ~~~kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      +|.|||.|. |+|.|-+++++.+|.-.+..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            367888888 88888888888888776653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.70  E-value=0.00032  Score=39.14  Aligned_cols=24  Identities=29%  Similarity=0.778  Sum_probs=22.1

Q ss_pred             eecccccccccChhhHHHHHHhcC
Q 011146           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        64 ~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |+|..|.+.|..++.|.+|.|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999884

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00063  Score=43.47  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=23.5

Q ss_pred             CCCCceecccccccccChhhHHHHHH
Q 011146           59 MATNRFLCEICNKGFQRDQNLQLHRR   84 (492)
Q Consensus        59 ~~~k~~~C~~Cgk~F~~~~~L~~H~r   84 (492)
                      ++-|||.|.+|+|.|-....+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46799999999999999999999964

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00049  Score=39.44  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=17.4

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      |||+|..|       .++-.+.+.|++|+|+|.
T Consensus         2 kp~kck~c-------dyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTC-------DYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSS-------CCEESSHHHHHHHHHHSC
T ss_pred             CCcccccc-------cchhcchhhHhhhhhccc
Confidence            56666666       666666677777776664

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00063  Score=38.52  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=17.0

Q ss_pred             CCcccChhhHHhhhcccCCCc
Q 011146          118 SRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      .+.|.++.-|+.|-|.|+|||
T Consensus         7 ~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           7 HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCCCSSHHHHHHHHHHHSSCC
T ss_pred             HHHHHHhHhhhhccccccCCC
Confidence            888888888888888888775

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.48  E-value=0.00079  Score=42.72  Aligned_cols=27  Identities=26%  Similarity=0.587  Sum_probs=25.2

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .+.|+|.+|+|.|.+-..|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999999997

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.43  E-value=0.00091  Score=38.73  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=18.3

Q ss_pred             Cceeec---CCCccCChhHHHHHHhHh
Q 011146          165 REYRCD---CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       165 kp~~C~---C~k~F~~~~~L~~H~~~h  188 (492)
                      .||+|.   |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            477783   888888888888887776

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0014  Score=37.99  Aligned_cols=27  Identities=33%  Similarity=0.776  Sum_probs=25.1

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      +..|.|..|...|+++..|+.||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            457999999999999999999999997

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=38.42  Aligned_cols=23  Identities=17%  Similarity=0.528  Sum_probs=11.9

Q ss_pred             ccccCcCccccCChHHHHHhhhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ||.|..|+..|.++..|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            34555555555555555555543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.24  E-value=0.00074  Score=39.30  Aligned_cols=30  Identities=27%  Similarity=0.618  Sum_probs=25.9

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      |||.|.+-+|     .+.|....+|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5788888766     99999999999999999875

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=38.41  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=12.1

Q ss_pred             cccccCcCccccCChHHHHHhhhh
Q 011146          138 KKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |||.|.+|..+-...+.|+.|.++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            345555555555555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0014  Score=38.01  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=22.1

Q ss_pred             ceecccccccccChhhHHHHHHhc
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      ||.|..|+..|.++.+|..||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            699999999999999999999753

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.10  E-value=0.0013  Score=39.19  Aligned_cols=23  Identities=13%  Similarity=0.450  Sum_probs=12.7

Q ss_pred             ccccCcCccccCChHHHHHhhhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ||.|.+|++.|.+++.|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            45555555555555555555544

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0016  Score=37.91  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=13.0

Q ss_pred             cccccCcCccccCChHHHHHhhhh
Q 011146          138 KKWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      +||+|.+|..-....++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            355555555555555555555554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0016  Score=37.71  Aligned_cols=29  Identities=17%  Similarity=0.419  Sum_probs=22.4

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      +..|.|..|       ...|.++-.|+.||..|+||
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            456778887       88888888888888888775

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0023  Score=37.27  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=15.8

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~  136 (492)
                      |||.|..|       .++..+.++|+.|+++.++
T Consensus         1 kpy~cqyc-------~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYC-------EFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSS-------SCCCSCSHHHHHHHHHHTS
T ss_pred             CCcccccc-------ccccccchhhhhhhhcccc
Confidence            45666665       5566666666666665443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.002  Score=39.71  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             cccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       104 ~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      .|.|..-+|...  ++.|..+..|..|||.|+||
T Consensus         2 ~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            466766555322  56799999999999999986

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0029  Score=39.78  Aligned_cols=27  Identities=22%  Similarity=0.662  Sum_probs=23.8

Q ss_pred             CCCceee--c-CCCccCChhHHHHHHhHhc
Q 011146          163 GTREYRC--D-CGTLFSRKDSFITHRAFCD  189 (492)
Q Consensus       163 ~~kp~~C--~-C~k~F~~~~~L~~H~~~h~  189 (492)
                      .+|||.|  + |+.+|...+.|..|+.+|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  4 9999999999999999886

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.78  E-value=0.0032  Score=35.00  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=15.5

Q ss_pred             ccCCCCCCCCCCCCCcccChhhHHhhhcccC
Q 011146          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (492)
Q Consensus       105 y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~  135 (492)
                      |+|..|       .+.|..++.|.+|.|.|.
T Consensus         1 ykcglc-------ersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLC-------ERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSS-------CCBCSSHHHHHHHGGGTC
T ss_pred             Ccccch-------HHHHHHHHHHHHHHHhhc
Confidence            456665       666666666666666663

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.003  Score=39.70  Aligned_cols=28  Identities=29%  Similarity=0.746  Sum_probs=25.2

Q ss_pred             CCCceecc--cccccccChhhHHHHHHhcC
Q 011146           60 ATNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        60 ~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .+|||.|.  -|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            58999995  59999999999999998885

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.004  Score=35.45  Aligned_cols=23  Identities=26%  Similarity=0.562  Sum_probs=15.2

Q ss_pred             ccccCcCccccCChHHHHHhhhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      ||+|..|||.|.++..|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            56677777777777777666543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0028  Score=36.09  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.3

Q ss_pred             ceecccccccccChhhHHHHHH
Q 011146           63 RFLCEICNKGFQRDQNLQLHRR   84 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r   84 (492)
                      ||+|..|||.|-++.+|..|.-
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6999999999999999999964

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.51  E-value=0.0037  Score=37.15  Aligned_cols=25  Identities=32%  Similarity=0.735  Sum_probs=22.1

Q ss_pred             ceeec-CCCccCChhHHHHHHhHhcC
Q 011146          166 EYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       166 p~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      ||.|. |++.|.+++-|.+|..+-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            79999 99999999999999876553

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.43  E-value=0.0028  Score=36.61  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=17.6

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhccc
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      .||+|+.-+|     ++.|...+.|++|.++|
T Consensus         2 ~py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCc-----cccccCHHHHhhhhhcc
Confidence            3566665544     77777777777776665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0068  Score=35.18  Aligned_cols=26  Identities=15%  Similarity=0.419  Sum_probs=23.7

Q ss_pred             Cceeec-CCCccCChhHHHHHHhHhcC
Q 011146          165 REYRCD-CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       165 kp~~C~-C~k~F~~~~~L~~H~~~h~~  190 (492)
                      +||+|. |..--...++|.+|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            699999 99999999999999988775

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0039  Score=37.05  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=20.4

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhh-cccCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHF-SRKHG  136 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~-~~H~~  136 (492)
                      |||.|.+-+|     .|+|...+.-.+|. |+|..
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccC
Confidence            5777777655     77777777777775 66654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.06  E-value=0.0058  Score=38.61  Aligned_cols=30  Identities=13%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             cccccCCCCCCCCCCCCCcccChhhHHhhhcccCCCc
Q 011146          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (492)
Q Consensus       102 ~k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~ek  138 (492)
                      .+.|+|.+|       ++.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFC-------KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTT-------CCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCC-------CCccCCcccccchHhhhcchH
Confidence            356777777       777777777777777776554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0047  Score=36.70  Aligned_cols=26  Identities=31%  Similarity=0.768  Sum_probs=23.7

Q ss_pred             Cceeccc--ccccccChhhHHHHH-HhcC
Q 011146           62 NRFLCEI--CNKGFQRDQNLQLHR-RGHN   87 (492)
Q Consensus        62 k~~~C~~--Cgk~F~~~~~L~~H~-r~H~   87 (492)
                      |||.|++  |.|.|...+.--.|. |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6899998  999999999999996 8886

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.63  E-value=0.0094  Score=33.19  Aligned_cols=23  Identities=30%  Similarity=0.642  Sum_probs=20.9

Q ss_pred             ceecccccccccChhhHHHHHHh
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      .|.|+.|-|.|.++.++..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            38999999999999999999765

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.27  E-value=0.016  Score=33.55  Aligned_cols=26  Identities=15%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             Cceeec---CCCccCChhHHHHHHhHhcC
Q 011146          165 REYRCD---CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       165 kp~~C~---C~k~F~~~~~L~~H~~~h~~  190 (492)
                      |||.|.   |.|.|.....|.+|...|.+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            578883   88888888888888877764

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.019  Score=31.77  Aligned_cols=21  Identities=29%  Similarity=0.808  Sum_probs=12.0

Q ss_pred             ccccCcCccccCChHHHHHhh
Q 011146          139 KWKCEKCSKKYAVQSDWKAHS  159 (492)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~  159 (492)
                      ||+|.-|...|..+.+|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            455555555555555555554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=0.022  Score=31.54  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=20.5

Q ss_pred             ceecccccccccChhhHHHHHH
Q 011146           63 RFLCEICNKGFQRDQNLQLHRR   84 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r   84 (492)
                      ||+|.-|...|-.+..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999964

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.025  Score=37.20  Aligned_cols=27  Identities=26%  Similarity=0.570  Sum_probs=24.1

Q ss_pred             CCceecccccccccChhhHHHHHHhcC
Q 011146           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        61 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .-.|.|.+|||.|.....|+.|.-.|-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            346899999999999999999998885

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.029  Score=31.93  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=21.7

Q ss_pred             ceecccccccccChhhHHHHHHhc
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      +|.|+.|+-...+++.|..|+|.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            589999999999999999998753

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.035  Score=33.61  Aligned_cols=26  Identities=27%  Similarity=0.815  Sum_probs=18.7

Q ss_pred             ceeec-CCCccCChhHHHHHHhHhcCc
Q 011146          166 EYRCD-CGTLFSRKDSFITHRAFCDAL  191 (492)
Q Consensus       166 p~~C~-C~k~F~~~~~L~~H~~~h~~~  191 (492)
                      .|.|. |+|+|.++..+.+|...+.+.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            47777 777777777777777766553

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.022  Score=34.49  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.0

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|.|..|||+|.++..+.+|-..-.
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            4999999999999999999976554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.031  Score=31.89  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=23.1

Q ss_pred             ceecccccccccChhhHHHHHHhcC
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |-+|..|..+-..+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999995

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.26  E-value=0.04  Score=30.59  Aligned_cols=22  Identities=32%  Similarity=0.696  Sum_probs=11.2

Q ss_pred             cccCcCccccCChHHHHHhhhh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |.|++|-|.|.++..+..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4455555555555555555444

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.044  Score=31.16  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=14.5

Q ss_pred             cccCcCccccCChHHHHHhhhh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |.|+.|+....++++|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5666666666666666666654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.067  Score=30.46  Aligned_cols=17  Identities=12%  Similarity=0.069  Sum_probs=10.8

Q ss_pred             CCcccChhhHHhhhccc
Q 011146          118 SRALGDLTGIKKHFSRK  134 (492)
Q Consensus       118 ~k~f~~~s~L~~H~~~H  134 (492)
                      .+....+..|+.|.|+|
T Consensus         9 syscsskaalrvh~rih   25 (28)
T d1x5wa1           9 SYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SCEESSHHHHHHHHGGG
T ss_pred             ccccCcHHHHHHhhccc
Confidence            66666666666666665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.081  Score=34.71  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=13.5

Q ss_pred             cccCcCccccCChHHHHHhhhhcC
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKICG  163 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~~~  163 (492)
                      |.|..|+|.|.....|+.|...||
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeccccccccCCHHHHhHhHHhcC
Confidence            455666666666555555554433

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.08  E-value=0.041  Score=32.29  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=25.0

Q ss_pred             ccccCCCCCCCCCCCCCcccChhhHHhhhcccCCC
Q 011146          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (492)
Q Consensus       103 k~y~C~~C~C~~~~c~k~f~~~s~L~~H~~~H~~e  137 (492)
                      |.|+|...+|     +..|...-.|..|+-.|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            5688877655     99999999999999999886

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.05  E-value=0.069  Score=30.09  Aligned_cols=24  Identities=29%  Similarity=0.876  Sum_probs=20.8

Q ss_pred             eecc--cccccccChhhHHHHHHhcC
Q 011146           64 FLCE--ICNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        64 ~~C~--~Cgk~F~~~~~L~~H~r~H~   87 (492)
                      |.|.  -|+|.|+....|+.|.-.|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7785  49999999999999988774

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.14  E-value=0.12  Score=29.53  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=18.5

Q ss_pred             CCCCCCCCcccChhhHHhhhccc
Q 011146          112 CVHHDPSRALGDLTGIKKHFSRK  134 (492)
Q Consensus       112 C~~~~c~k~f~~~s~L~~H~~~H  134 (492)
                      |.+..|.+.|.+.+.+++|+-+|
T Consensus         4 CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           4 CPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG
T ss_pred             CCcccHHHHhhchHHHHHHhhcc
Confidence            34445599999999999999887

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.48  E-value=0.29  Score=28.61  Aligned_cols=26  Identities=19%  Similarity=0.563  Sum_probs=22.3

Q ss_pred             Cceeec---CCCccCChhHHHHHHhHhcC
Q 011146          165 REYRCD---CGTLFSRKDSFITHRAFCDA  190 (492)
Q Consensus       165 kp~~C~---C~k~F~~~~~L~~H~~~h~~  190 (492)
                      |.|.|.   |+..|.....|..|+-+|.+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            568894   99999999999999988875

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=0.35  Score=27.47  Aligned_cols=23  Identities=26%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             eccc--ccccccChhhHHHHHHhcC
Q 011146           65 LCEI--CNKGFQRDQNLQLHRRGHN   87 (492)
Q Consensus        65 ~C~~--Cgk~F~~~~~L~~H~r~H~   87 (492)
                      .|+.  |+|.|+..+.++.|+.+|.
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            5664  9999999999999998873

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.16  E-value=0.39  Score=31.24  Aligned_cols=31  Identities=13%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CCcccccCcCccccCChHHHHHhhhh-cCCCc
Q 011146          136 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  166 (492)
Q Consensus       136 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp  166 (492)
                      .+.|-.|++|+.......+|++|+.. |..||
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            45667777777777777777777766 54443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=81.96  E-value=0.61  Score=26.71  Aligned_cols=23  Identities=26%  Similarity=0.584  Sum_probs=15.9

Q ss_pred             ceeec---CCCccCChhHHHHHHhHh
Q 011146          166 EYRCD---CGTLFSRKDSFITHRAFC  188 (492)
Q Consensus       166 p~~C~---C~k~F~~~~~L~~H~~~h  188 (492)
                      .|+|+   |+.+|..+..+++|...-
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrf   27 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRF   27 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHhhh
Confidence            46774   777777777777776443

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.68  E-value=0.49  Score=28.16  Aligned_cols=26  Identities=27%  Similarity=0.574  Sum_probs=22.0

Q ss_pred             CCCceecccccccccChhhHHHHHHh
Q 011146           60 ATNRFLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        60 ~~k~~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      +..+|.|.-||-.|...+.|..|...
T Consensus         5 kparf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cccceeccccceeecChhHHHhhhhe
Confidence            44579999999999999999998643

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.40  E-value=0.53  Score=27.99  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=13.6

Q ss_pred             cccCcCccccCChHHHHHhhhh
Q 011146          140 WKCEKCSKKYAVQSDWKAHSKI  161 (492)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~  161 (492)
                      |.|.-||-+|...+.|..|+..
T Consensus         9 f~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTTT
T ss_pred             eeccccceeecChhHHHhhhhe
Confidence            5666666666666666666543

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.32  E-value=0.48  Score=27.16  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             ceecccccccccChhhHHHHHHh
Q 011146           63 RFLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        63 ~~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      .|.|..|||..+....++.|...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            48999999999999999999654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.95  E-value=0.21  Score=35.71  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             CceecccccccccChhhHHHHHHh
Q 011146           62 NRFLCEICNKGFQRDQNLQLHRRG   85 (492)
Q Consensus        62 k~~~C~~Cgk~F~~~~~L~~H~r~   85 (492)
                      -.|-|.+|+|.|.+...|..|++.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            348999999999999999999753

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.91  E-value=0.47  Score=28.59  Aligned_cols=27  Identities=15%  Similarity=0.447  Sum_probs=22.9

Q ss_pred             CCCceecccccccccChhhHHHHHHhc
Q 011146           60 ATNRFLCEICNKGFQRDQNLQLHRRGH   86 (492)
Q Consensus        60 ~~k~~~C~~Cgk~F~~~~~L~~H~r~H   86 (492)
                      ++..|+|.+|.+.+...+++-+|...-
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            356799999999999999999996543