Citrus Sinensis ID: 011148

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--

MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSLTSLQM

cccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEccccEEEccccEEEEEEcEEEEEEEEEEEEEEEEEcccccccccEEEEEEcEEEEEEEEEEEccccEEEEEEEEEEEEcEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccEEEEEEEEEEEEccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHccHHHHHHHccccccccccccEEEEEEEEEEEccEEEEEEccEEEccccccc

cccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHHHHHHHcccccccccccEEEcEEEEEEEEEEEEEEEEEEcccccEEcccccEEEEEEcEEEEEEEEEEEEEcEEEEEEEEcccEEEEEEEEEEEEEEEEEccccccEEEEEEccccEEcEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEcccccccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccEEEEEccEEEEEEccEEccccHccc

mgcfikfssPAILFMFLSLLliptsahvqvneGGYISAVISKKGLDFFKNYLInkatssiiplelpdiekskkiplIGKVHMALSNIIIYSVEidssyvetgdpdllLAVSgatadcgmnweysygswllptisdsgaATVLVEGLEVGLTVSLKEQGGIVKVILVDCgshvrdisikvDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFqslpkqipvsdiasmntsfvrspvlsdssvEVEINGLFTAISGTSMLNYYHkgfessascsspakmigIQLNENVFSSGALVYFNANRLhwiiddipeksvlntsgwrhiipqlytqypndgmnlyisvtsppkihvsehdiggtidldmtinvldssevipVACISLVintscfpeikgdnlagviRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINahlrrgfplplpsgftlenaeifctnSWVVVCSDLAALSLTSLQM

MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKAtssiiplelpdieKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTvslkeqggIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRspvlsdssvEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSLTSLQM

MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAtvlveglevgltvslKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSLTSLQM

**CFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSL*****

********SPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYY****************IGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSLTSLQ*

****IKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALS******

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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		492	2.2.26 [Sep-21-2011]
Q9MAU5		488	Putative BPI/LBP family p	yes	no	0.916	0.924	0.491	1e-133
Q8VYC2		515	Putative BPI/LBP family p	no	no	0.953	0.910	0.423	1e-112
Q6AXU0		482	Bactericidal permeability	yes	no	0.900	0.919	0.231	5e-30
Q28739		445	Bactericidal permeability	no	no	0.833	0.921	0.247	9e-28
P17213		487	Bactericidal permeability	yes	no	0.918	0.928	0.233	3e-26
Q2TBI0		481	Lipopolysaccharide-bindin	yes	no	0.835	0.854	0.227	6e-26
P18428		481	Lipopolysaccharide-bindin	no	no	0.817	0.835	0.245	9e-26
P17453		482	Bactericidal permeability	no	no	0.904	0.923	0.251	1e-25
Q61805		481	Lipopolysaccharide-bindin	yes	no	0.894	0.914	0.221	4e-25
Q67E05		483	Bactericidal permeability	no	no	0.890	0.906	0.220	7e-22

>sp\|Q9MAU5\|Y1049_ARATH Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1	Back alignment and function desciption

 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/452 (49%), Positives = 321/452 (71%), Gaps = 1/452 (0%)

Query: 35  YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEI 94
           + S ++S+ GLDF KN L+NKA +SIIPL++P IEKS KIP +G + + +SN+ IY +++
Sbjct: 28  FTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYELDV 87

Query: 95  DSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLP-TISDSGAATVLVEGLEVGLTVS 153
            SSYV+ G+  +++  SG T +  MNW YSY +WL P  ISD G A+V V+G+E+GL++ 
Sbjct: 88  ASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLSLG 147

Query: 154 LKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISEL 213
           LK   G +K+ L +CG HV DI+I+++GGASW YQ +  AF+ +I S+VES + KK++E 
Sbjct: 148 LKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLTEG 207

Query: 214 ITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHK 273
           ++ LDS  QSLPK+IPV D A +N +F   P+L +SS+  EI+GLFT      +L  + K
Sbjct: 208 VSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSFFK 267

Query: 274 GFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIP 333
              S   C   +KM+GI ++E VF+S A +Y+NA+ + W++D IPE+S+LNT+ WR IIP
Sbjct: 268 KSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFIIP 327

Query: 334 QLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVINT 393
           QLY +YPN  MNL IS++SPP + +SE  +G  ++ D+ INVLD+++VIPVACISL+I  
Sbjct: 328 QLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISLMIRG 387

Query: 394 SCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRG 453
           S    + G+NL G + L DF  SL WS IGNL++H+ Q ++ T+++T F+PY N HL +G
Sbjct: 388 SGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPYANDHLEKG 447

Query: 454 FPLPLPSGFTLENAEIFCTNSWVVVCSDLAAL 485
           FPLP+  GFTL+NAEI C+ S + VCSD+A L
Sbjct: 448 FPLPIMHGFTLQNAEIICSESEITVCSDVAYL 479

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8VYC2\|Y2070_ARATH Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1	Back alignment and function description

>sp\|Q6AXU0\|BPI_RAT Bactericidal permeability-increasing protein OS=Rattus norvegicus GN=Bpi PE=2 SV=1	Back alignment and function description

>sp\|Q28739\|BPI_RABIT Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus GN=BPI PE=2 SV=1	Back alignment and function description

>sp\|P17213\|BPI_HUMAN Bactericidal permeability-increasing protein OS=Homo sapiens GN=BPI PE=1 SV=4	Back alignment and function description

>sp\|Q2TBI0\|LBP_BOVIN Lipopolysaccharide-binding protein OS=Bos taurus GN=LBP PE=2 SV=1	Back alignment and function description

>sp\|P18428\|LBP_HUMAN Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3	Back alignment and function description

>sp\|P17453\|BPI_BOVIN Bactericidal permeability-increasing protein OS=Bos taurus GN=BPI PE=2 SV=2	Back alignment and function description

>sp\|Q61805\|LBP_MOUSE Lipopolysaccharide-binding protein OS=Mus musculus GN=Lbp PE=2 SV=2	Back alignment and function description

>sp\|Q67E05\|BPI_MOUSE Bactericidal permeability-increasing protein OS=Mus musculus GN=Bpi PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		492
224056407		470	predicted protein [Populus trichocarpa]	0.939	0.982	0.574	1e-150
255580770		493	Lipopolysaccharide-binding protein precu	0.932	0.931	0.553	1e-145
359494081		501	PREDICTED: putative BPI/LBP family prote	0.975	0.958	0.518	1e-141
225447199		498	PREDICTED: putative BPI/LBP family prote	0.961	0.949	0.521	1e-141
147854318		558	hypothetical protein VITISV_009101 [Viti	0.975	0.860	0.520	1e-140
224131712		492	predicted protein [Populus trichocarpa]	0.932	0.932	0.519	1e-139
356552791		491	PREDICTED: putative BPI/LBP family prote	0.918	0.920	0.535	1e-138
356569730		493	PREDICTED: putative BPI/LBP family prote	0.969	0.967	0.501	1e-132
356501578		480	PREDICTED: putative BPI/LBP family prote	0.918	0.941	0.519	1e-131
18390462		488	lipid-binding serum glycoprotein-like pr	0.916	0.924	0.491	1e-131

>gi\|224056407\|ref\|XP_002298841.1\| predicted protein [Populus trichocarpa] gi\|222846099\|gb\|EEE83646.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/465 (57%), Positives = 350/465 (75%), Gaps = 3/465 (0%)

Query: 12  ILFMFLSLLLIPTSA--HVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIE 69
           + F+ + L+L P +A   +Q NE GYIS ++S KG+DF K+ LINKA S+IIPL+LPDIE
Sbjct: 5   LFFLVVCLVLAPAAAAHDLQSNEEGYISLLLSNKGVDFAKDVLINKAVSTIIPLQLPDIE 64

Query: 70  KSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWL 129
           KS KIPLIGKVHM LSNI IYSV I SSYVETG+P L+L  SGATA   M W YSY +WL
Sbjct: 65  KSVKIPLIGKVHMILSNITIYSVNISSSYVETGNPGLVLVASGATASLSMKWAYSYSTWL 124

Query: 130 LPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQA 189
           +  ISDSG A+V V+G+EVGLTV+ KEQGG +++ L+DCG HV+DI+IK++GGASWLYQ 
Sbjct: 125 I-VISDSGDASVQVKGMEVGLTVAFKEQGGTLELSLLDCGCHVQDITIKLNGGASWLYQG 183

Query: 190 LFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDS 249
           + +AF+G I SAVE+A++KKI E I KLDS+ QS+PKQIP+  +A++N +FV SPVLS+S
Sbjct: 184 IVDAFQGSIGSAVENAISKKIKEEIVKLDSLLQSIPKQIPIDHVAALNATFVDSPVLSNS 243

Query: 250 SVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANR 309
            +E+EINGLFTA    ++   Y+KG +SS   + PAKMIGI L+E+VF++  LVY NA  
Sbjct: 244 FIELEINGLFTATDDFAVPRNYNKGKKSSLFYNCPAKMIGISLHEDVFNTAGLVYLNAGC 303

Query: 310 LHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDL 369
           +HWI+D     S LNT+ W++I PQLY QYPN  M+L IS TS P + ++++ I  TI L
Sbjct: 304 MHWIVDKSLNHSFLNTAAWKYIYPQLYLQYPNHDMSLNISATSSPAVKIAKNGINVTIYL 363

Query: 370 DMTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHI 429
           D+T+NVLD S+VIPVACISL IN SC P+I  + +AG ++L  F  SL WS IGN++M +
Sbjct: 364 DVTVNVLDDSKVIPVACISLEINASCSPQILWNKIAGTLKLKSFTMSLKWSEIGNVHMDL 423

Query: 430 FQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNS 474
            Q ++  +L+T F+PY+N HL RGFPLPL  GF+L+NAEI  T S
Sbjct: 424 LQPVIFALLETVFIPYVNLHLMRGFPLPLIHGFSLQNAEILYTES 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255580770\|ref\|XP_002531206.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] gi\|223529208\|gb\|EEF31183.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359494081\|ref\|XP_002277143.2\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225447199\|ref\|XP_002272020.1\| PREDICTED: putative BPI/LBP family protein At3g20270 [Vitis vinifera] gi\|297739241\|emb\|CBI28892.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147854318\|emb\|CAN83425.1\| hypothetical protein VITISV_009101 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224131712\|ref\|XP_002321159.1\| predicted protein [Populus trichocarpa] gi\|222861932\|gb\|EEE99474.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356552791\|ref\|XP_003544746.1\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max]	Back alignment and taxonomy information

>gi\|356569730\|ref\|XP_003553049.1\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max]	Back alignment and taxonomy information

>gi\|356501578\|ref\|XP_003519601.1\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max]	Back alignment and taxonomy information

>gi|18390462|ref|NP_563724.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] gi|75264940|sp|Q9MAU5.1|Y1049_ARATH RecName: Full=Putative BPI/LBP family protein At1g04970; Flags: Precursor gi|7211993|gb|AAF40464.1|AC004809_22 ESTs gb|T76367 and gb|AA404955 come from this gene [Arabidopsis thaliana] gi|28393732|gb|AAO42277.1| unknown protein [Arabidopsis thaliana] gi|28973365|gb|AAO64007.1| unknown protein [Arabidopsis thaliana] gi|332189650|gb|AEE27771.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		492
TAIR\|locus:2010592		488	AT1G04970 [Arabidopsis thalian	0.955	0.963	0.463	5.4e-118
TAIR\|locus:2092334		722	AT3G20270 [Arabidopsis thalian	0.957	0.652	0.424	6.6e-97
UNIPROTKB\|F1Q3J3		485	BPI "Uncharacterized protein"	0.896	0.909	0.234	6e-32
UNIPROTKB\|I3LFA0		483	BPI "Uncharacterized protein"	0.898	0.915	0.246	7.7e-32
UNIPROTKB\|I3L5U6		481	LBP "Uncharacterized protein"	0.898	0.918	0.231	1.9e-30
RGD\|1303179		482	Bpi "bactericidal/permeability	0.922	0.941	0.225	1.4e-29
ZFIN\|ZDB-GENE-070912-360		472	si:dkey-11f4.4 "si:dkey-11f4.4	0.886	0.923	0.232	4.1e-29
UNIPROTKB\|P17453		482	BPI "Bactericidal permeability	0.890	0.908	0.246	4.6e-28
UNIPROTKB\|P18428		481	LBP "Lipopolysaccharide-bindin	0.894	0.914	0.246	6e-28
UNIPROTKB\|P17213		487	BPI "Bactericidal permeability	0.890	0.899	0.233	1.3e-27

TAIR\|locus:2010592 AT1G04970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 220/475 (46%), Positives = 317/475 (66%)

Query:    13 LFMFL-SLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKS 71
             LF+ L S   +P+      +   + S ++S+ GLDF KN L+NKA +SIIPL++P IEKS
Sbjct:     8 LFLLLPSFFFLPSQTQ---STDSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKS 64

Query:    72 KKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLP 131
              KIP +G + + +SN+ IY +++ SSYV+ G+  +++  SG T +  MNW YSY +WL P
Sbjct:    65 MKIPFLGGIDVVVSNLTIYELDVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPP 124

Query:   132 T-ISDSGAAXXXXXXXXXXXXXXXKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQAL 190
               ISD G A               K   G +K+ L +CG HV DI+I+++GGASW YQ +
Sbjct:   125 IEISDQGIASVQVQGMEIGLSLGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGM 184

Query:   191 FEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSS 250
               AF+ +I S+VES + KK++E ++ LDS  QSLPK+IPV D A +N +F   P+L +SS
Sbjct:   185 VNAFKDQIGSSVESTIAKKLTEGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSS 244

Query:   251 VEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRL 310
             +  EI+GLFT      +L  + K   S   C   +KM+GI ++E VF+S A +Y+NA+ +
Sbjct:   245 ITFEIDGLFTKGETNQVLKSFFKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFV 304

Query:   311 HWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLD 370
              W++D IPE+S+LNT+ WR IIPQLY +YPN  MNL IS++SPP + +SE  +G  ++ D
Sbjct:   305 QWVVDKIPEQSLLNTARWRFIIPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNAD 364

Query:   371 MTINVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIF 430
             + INVLD+++VIPVACISL+I  S    + G+NL G + L DF  SL WS IGNL++H+ 
Sbjct:   365 LVINVLDANQVIPVACISLMIRGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLL 424

Query:   431 QSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAAL 485
             Q ++ T+++T F+PY N HL +GFPLP+  GFTL+NAEI C+ S + VCSD+A L
Sbjct:   425 QPIVWTVIQTVFVPYANDHLEKGFPLPIMHGFTLQNAEIICSESEITVCSDVAYL 479

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR\|locus:2092334 AT3G20270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q3J3 BPI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LFA0 BPI "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L5U6 LBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1303179 Bpi "bactericidal/permeability-increasing protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070912-360 si:dkey-11f4.4 "si:dkey-11f4.4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|P17453 BPI "Bactericidal permeability-increasing protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P18428 LBP "Lipopolysaccharide-binding protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P17213 BPI "Bactericidal permeability-increasing protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAU5	Y1049_ARATH	No assigned EC number	0.4911	0.9166	0.9241	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		492
cd00026		200	cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bac	2e-50
cd00025		223	cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bac	2e-33
smart00329		202	smart00329, BPI2, BPI/LBP/CETP C-terminal domain	1e-29
pfam02886		238	pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family	3e-22
cd00264		208	cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe	3e-19
pfam01273		163	pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family,	1e-18
smart00328		225	smart00328, BPI1, BPI/LBP/CETP N-terminal domain	3e-18

>gnl\|CDD\|237993 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

 Score =  170 bits (433), Expect = 2e-50
 Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 3/199 (1%)

Query: 287 MIGIQLNENVFSSGALVYFNANRLHWIIDD--IPEKSVLNTSGWRHIIPQLYTQYPNDGM 344
           M+ + ++E+VF+S ALVYF A  L+ ++ D   P KS L TS +   IP+L  +YPN   
Sbjct: 1   MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQ 60

Query: 345 NLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDS-SEVIPVACISLVINTSCFPEIKGDN 403
            L ISV+SPP + +SE        LD+ I      S++ P+  + +  ++S    +    
Sbjct: 61  QLKISVSSPPHLVLSEGGATLAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKK 120

Query: 404 LAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFT 463
           L G + L+ F   L  S IG+    + Q++++TIL+   LP +N  LRRGFPLPLP  FT
Sbjct: 121 LIGSLNLDRFLLELKSSNIGSFIPELLQAILTTILEITVLPNVNDKLRRGFPLPLPKNFT 180

Query: 464 LENAEIFCTNSWVVVCSDL 482
           L +AEI     ++++ +D+
Sbjct: 181 LYDAEIQVHKDFLLLGADV 199

; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide. Length = 200

>gnl\|CDD\|237992 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|128624 smart00329, BPI2, BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>gnl\|CDD\|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|216404 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214622 smart00328, BPI1, BPI/LBP/CETP N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		492
KOG4160		492	consensus BPI/LBP/CETP family protein [Defense mec	100.0
PF02886		238	LBP_BPI_CETP_C: LBP / BPI / CETP family, C-termina	100.0
cd00025		223	BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal	100.0
smart00328		225	BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal	100.0
smart00329		202	BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal	100.0
cd00026		200	BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal	100.0
PF01273		164	LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal	99.96
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.89
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.86
PF06585		248	JHBP: Haemolymph juvenile hormone binding protein	98.4
smart00700		225	JHBP Juvenile hormone binding protein domains in i	98.25
PF14613		164	DUF4449: Protein of unknown function (DUF4449)	91.68

>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]	Back alignment and domain information

Probab=100.00  E-value=9.9e-64  Score=523.74  Aligned_cols=447  Identities=29%  Similarity=0.455  Sum_probs=408.3

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEEEE
Q 011148           32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV  110 (492)
Q Consensus        32 ~~pGi~~rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l~i  110 (492)
                      .+||+++|++++|++|+++++...+++++.++++||+.++++.+++|++.|.++++++.++..+.+.+++ ++.++.|++
T Consensus        26 ~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~~~~  105 (492)
T KOG4160|consen   26 HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLSWSI  105 (492)
T ss_pred             cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEEEEE
Confidence            5588999999999999999999999999999999999999999888999999999999999999999999 778999999


Q ss_pred             ECceEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE-e-cCCeeEEEEeeeeEEeceEEEEEeCchhhHHH
Q 011148          111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGGASWLYQ  188 (492)
Q Consensus       111 ~~~~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~-~~G~p~v~~~~C~~~i~~v~i~l~g~~s~l~n  188 (492)
                      +++++.+.++|.+ .. |.+   ..+|.+++.++|+++.+.+.++ + .+|+|.++...|.+.++++++.+++-.+|+++
T Consensus       106 ~n~~~~~~~~~~~-~~-~~~---~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~  180 (492)
T KOG4160|consen  106 TNANISLSGRWKA-RT-RFL---ALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQ  180 (492)
T ss_pred             eeEEEEEeeeeEe-EE-EEE---ecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHH
Confidence            9999999999999 43 332   4559999999999999999996 5 78999999999999999999888855999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEe-ccCcc
Q 011148          189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTA-ISGTS  266 (492)
Q Consensus       189 ~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~~~~-~~~~~  266 (492)
                      .|.+.+.+.||+.++.++|+.+++.+ .++|.+++++|+..++|+...+||+++++|.+|+++++++++|++++ .++..
T Consensus       181 ~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~  260 (492)
T KOG4160|consen  181 LFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVT  260 (492)
T ss_pred             HHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCC
Confidence            99999999999999999999999999 58999999999999999999999999999999999999999999999 44443


Q ss_pred             ccCcccCCCCCCcC-CCCCCceEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCc--ccccc--chhhccHhHHhcC
Q 011148          267 MLNYYHKGFESSAS-CSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTS--GWRHIIPQLYTQY  339 (492)
Q Consensus       267 ~~p~~~~~~p~~~~-~~~~~~Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~--~lnTs--~~~~~~P~l~~~y  339 (492)
                      . |+   ..|...+ ++++++|+++++|||++||+++++|++|.+++.+  ++.|.+.  .++|+  |+|+++|+++++|
T Consensus       261 ~-~~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~  336 (492)
T KOG4160|consen  261 P-PF---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQY  336 (492)
T ss_pred             C-cc---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHC
Confidence            3 32   2233333 3446999999999999999999999999999999  3444434  45666  4677999999999


Q ss_pred             CCCCeEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEee
Q 011148          340 PNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINV-LDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLT  418 (492)
Q Consensus       340 Pn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~v-~~~~~~~~v~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~  418 (492)
                      ||+++++++++.++|.|.+++++..+...+.+.+++ .++++..+++++++++++.+++++.++++.|++++++++++.+
T Consensus       337 Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~  416 (492)
T KOG4160|consen  337 PNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFKIEVK  416 (492)
T ss_pred             CCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeEEEEe
Confidence            999999999999999999999999999999998875 5666789999999999999999999999999999999999999


Q ss_pred             eeccCCcchHHHHHHHHHHHhhccHHHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEEeeeeecc
Q 011148          419 WSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAALSL  487 (492)
Q Consensus       419 ~S~iG~~~~~~L~~~l~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~~~~~  487 (492)
                      +|++|.++.+.++.+++.+.+.++.|.+|++|++|||||.+.++.+.|+++.+++|++++++||.|.+.
T Consensus       417 ~s~~~~i~~~~l~~~~~~~~~~~l~p~~n~~L~~G~~lp~~~~~~~~~~~i~~~~~~L~l~~D~~~~~~  485 (492)
T KOG4160|consen  417 FSNIGGISLDSLQALLSTLSKSVLQPLVNSKLRKGFPLPIPDGFKLINPEISIVDGFLLLSADFLYKRT  485 (492)
T ss_pred             ecccCCccHHHHHHHHHHHHHHHhHHHHHHHHhcCccccccccceeecceEEEecCeEEEeccccchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999754

>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>smart00328 BPI1 BPI/LBP/CETP N-terminal domain	Back alignment and domain information

>smart00329 BPI2 BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP)	Back alignment and domain information

>smart00700 JHBP Juvenile hormone binding protein domains in insects	Back alignment and domain information

>PF14613 DUF4449: Protein of unknown function (DUF4449)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		492
1bp1_A		456	Crystal Structure Of Bpi, The Human Bactericidal Pe		3e-24
1ewf_A		456	The 1.7 Angstrom Crystal Structure Of Bpi Length =		1e-23

>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal Permeability-Increasing Protein Length = 456

Back alignment and structure

Iteration: 1

Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 105/463 (22%), Positives = 209/463 (45%), Gaps = 20/463 (4%) Query: 30 VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89 VN G + IS+KGLD+ + +++PD S KI +GK H + ++ I Sbjct: 1 VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58 Query: 90 YSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAXXXXXXXXXX 149 ++ SS + P++ L S + A+ ++ ++ L +S + Sbjct: 59 REFQLPSSQISM-VPNVGLKFSISNANIKISGKWKAQKRFL-KMSGNFDLSIEGMSISAD 116 Query: 150 XXXXXKEQGGIVKVILVDCGSHVRDISIKV-DGGASWLYQALFEAFEGKIKSAVESAVTK 208 G + C SH+ + + + WL Q + E +++ + S V + Sbjct: 117 LKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCE 176 Query: 209 KISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSM 267 K++ ++ KL FQ+LP + +A +N V P + +++V++ G F + + + Sbjct: 177 KVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236 Query: 268 LNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDD--IPEKS--VL 323 + E A+ +M+ + L++ F++ LVY A L + D IP++S L Sbjct: 237 PPFAPPVMEFPAAHD---RMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRL 293 Query: 324 NTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGT----IDLDMTINVLDSS 379 T + +P++ ++PN + +++S ++PP H+S G T +D+ VL +S Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPP--HLSVQPTGLTFYPAVDVQ-AFAVLPNS 350 Query: 380 EVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILK 439 + + I + S + + L G ++L+ L S IG + + Q +M+ I+ Sbjct: 351 ALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVP 410 Query: 440 TGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDL 482 LP +N L++GFPLP P+ L N + ++++ +D+ Sbjct: 411 ILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADV 453

PyMOL of 1bp1

>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi Length = 456

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		492
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	1e-83
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	1e-81
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Length = 456	Back alignment and structure

 Score =  264 bits (676), Expect = 1e-83
 Identities = 103/463 (22%), Positives = 208/463 (44%), Gaps = 20/463 (4%)

Query: 30  VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89
           VN G  +   IS+KGLD+            +  +++PD   S KI  +GK H +  ++ I
Sbjct: 1   VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58

Query: 90  YSVEIDSSYVETGDPD-LLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEV 148
              ++ SS +       L  ++S A       W+          +  SG   + +EG+ +
Sbjct: 59  REFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQK-----RFLKMSGNFDLSIEGMSI 113

Query: 149 GLTVSL--KEQGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQALFEAFEGKIKSAVESA 205
              + L      G   +    C SH+  + + +      WL Q   +  E  +++ + S 
Sbjct: 114 SADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQ 173

Query: 206 VTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISG 264
           V +K++  ++ +L   FQ+LP    +  +A +N   V  P  +  +++V++ G F + + 
Sbjct: 174 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENH 233

Query: 265 TSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDD--IPE--K 320
            +   +     E     ++  +M+ + L++  F++  LVY  A  L   + D  IP+  K
Sbjct: 234 HNPPPFAPPVMEF---PAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESK 290

Query: 321 SVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTI-NVLDSS 379
             L T  +   +P++  ++PN  + +++S ++PP + V    +     +D+    VL +S
Sbjct: 291 FRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNS 350

Query: 380 EVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILK 439
            +  +  I +    S     + + L G ++L+     L  S IG   + + Q +M+ I+ 
Sbjct: 351 ALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVP 410

Query: 440 TGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDL 482
              LP +N  L++GFPLP P+   L N  +    ++++  +D+
Sbjct: 411 ILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADV 453

PyMOL of 1ewf

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Length = 476	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		492
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	100.0
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	100.0
3uv1_A		196	DER F 7 allergen; super-roll; 2.00A {Dermatophagoi	99.12
3e8t_A		220	Takeout 1, takeout-like protein 1; transport prote	98.22
3h4z_A		568	Maltose-binding periplasmic protein fused with Al	97.24
2rck_A		225	JuvenIle hormone binding protein; hemolymph, JHBP-	96.58
2rqf_A		227	HJHBP, hemolymph juvenIle hormone binding protein;	94.53

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*	Back alignment and structure

Probab=100.00  E-value=4.3e-84  Score=679.90  Aligned_cols=445  Identities=22%  Similarity=0.391  Sum_probs=423.5

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEeeEEEEEEEeCCceeEe-CCCeeEEEE
Q 011148           32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV  110 (492)
Q Consensus        32 ~~pGi~~rit~~gl~y~~~~~~~~l~~~l~~~~iPd~~~~~~~~~~G~~~~~is~i~I~~~~~~~~sv~~-~~~gl~l~i  110 (492)
                      ++||+++|+|++||+|+++++.+++++++.+++|||++++++++++|++.|++++++|+++++|++++++ |++|+++++
T Consensus         1 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~g~~~~~ls~i~I~~~~~~~~~l~~~p~~gi~l~i   80 (456)
T 1ewf_A            1 VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSI   80 (456)
T ss_dssp             CCCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCceeccccceEEEEEEEEEEEEEecCCceEEECCCCEEEEEE
Confidence            4799999999999999999999999999999999999999999988999999999999999999999999 999999999


Q ss_pred             ECceEEEEeEEEEEeccccceeeeeeeEEEEEEecEEEEEEEEEE-ec-CCeeEEEEeeeeEEeceEEEEEeCc-hhhHH
Q 011148          111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQ-GGIVKVILVDCGSHVRDISIKVDGG-ASWLY  187 (492)
Q Consensus       111 ~~~~i~i~~~~~~~~~~~~~p~i~~~G~~~~~v~~~~i~~~l~l~-~~-~G~p~v~~~~C~~~i~~v~i~l~g~-~s~l~  187 (492)
                      +++++.++++|+|++  |+   ++++|.+++.++|+++++.++++ ++ +|+|+++..+|++++++++++++|+ .+|++
T Consensus        81 ~~~~~~l~~~~~~~~--~~---i~~~G~~~~~v~~v~i~~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l~  155 (456)
T 1ewf_A           81 SNANIKISGKWKAQK--RF---LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLI  155 (456)
T ss_dssp             EEEEEEEEEEEEEEE--TT---EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHH
T ss_pred             eCCcEEEEEEEEEEE--EE---EeeeeEEEEEEeeEEEEEEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHHH
Confidence            999999999999997  54   69999999999999999999997 77 9999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEeccCcc
Q 011148          188 QALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTS  266 (492)
Q Consensus       188 n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~g~~~~~~~~~  266 (492)
                      |.|.+.+++.|++.+++++|+++.+.+ +++|+.|+++|+.+++|+.+.+||+++++|.+++++++++++|++++.+++.
T Consensus       156 n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~  235 (456)
T 1ewf_A          156 QLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHN  235 (456)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCCC
Confidence            999999999999999999999999977 7799999999999999999999999999999999999999999999999877


Q ss_pred             ccCcccCCCCCCcCCCCCCceEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCc--cccccchhhccHhHHhcCCCC
Q 011148          267 MLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPND  342 (492)
Q Consensus       267 ~~p~~~~~~p~~~~~~~~~~Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~--~lnTs~~~~~~P~l~~~yPn~  342 (492)
                      .+|+.  +++.+. +++.++|+++++|||++||++++||++|.|++++  +++|+.+  +|||+|++.++|+++++|||+
T Consensus       236 ~~p~~--p~~~~~-p~~~~~m~~~~ls~~~~nS~l~~~~~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~~  312 (456)
T 1ewf_A          236 PPPFA--PPVMEF-PAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNM  312 (456)
T ss_dssp             CCSSC--CCCCCC-CCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTTC
T ss_pred             CCCCC--CCCcCC-CCCCCcEEEEEecHHHHHHHHHHHHhCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCCC
Confidence            77752  223333 4567899999999999999999999999999998  6899864  899999999999999999999


Q ss_pred             CeEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEEe-CCCceeeEEEEEEEEEEEEEEEEeCCEEEEEEEeeeEEEEeeeec
Q 011148          343 GMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSR  421 (492)
Q Consensus       343 ~~~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~v~-~~~~~~~v~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~  421 (492)
                      ++.+++++.++|.++++++++++++.+.+++++. ++++..++|+++++++++++++++++++.|+++++++++++++|+
T Consensus       313 ~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~  392 (456)
T 1ewf_A          313 KIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSN  392 (456)
T ss_dssp             BEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCEEEEEEECSSEEEEEEEECCCEEEEEEES
T ss_pred             eEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCceeeEEEEEEEEEEEEEEEEECCEEEEEEEecceEEEEEecc
Confidence            9999999999999999999999999999999865 677889999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHHHhhccHHHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEEeeee
Q 011148          422 IGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLAA  484 (492)
Q Consensus       422 iG~~~~~~L~~~l~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~~  484 (492)
                      +|.++++.|+.+++.+++..++|.+|++|++|||||.+.++++.|+++.+++||+++++|++|
T Consensus       393 iG~~~~~~l~~~l~~~l~~~~~P~~N~~L~~G~pLP~~~~~~~~n~~i~~~~~~l~i~~d~~~  455 (456)
T 1ewf_A          393 IGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY  455 (456)
T ss_dssp             SCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCCcCHHHHHHHHHHHHHHhhHHHHHHHHcCCeecCCCCceEEEccEEEEECCEEEEEeccee
Confidence            999999999999999999999999999999999999999999999999999999999999998

PyMOL of 1ewf

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens}	Back alignment and structure

>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}	Back alignment and structure

>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*	Back alignment and structure

>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}	Back alignment and structure

>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}	Back alignment and structure

>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		492
d1ewfa2		239	d.83.1.1 (A:218-456) Bactericidal permeability-inc	2e-51
d1ewfa1		217	d.83.1.1 (A:1-217) Bactericidal permeability-incre	2e-40

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (438), Expect = 2e-51
 Identities = 53/239 (22%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 250 SVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANR 309
           +++V++ G F + +  +   +           ++  +M+ + L++  F++  LVY  A  
Sbjct: 2   TLDVQMKGEFYSENHHNPPPFAPPVM---EFPAAHDRMVYLGLSDYFFNTAGLVYQEAGV 58

Query: 310 LHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGG 365
           L   +  D IP++S   L T  +   +P++  ++PN  + +++S ++PP + V    +  
Sbjct: 59  LKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTF 118

Query: 366 TIDLDMTI-NVLDSSEVIPVACISLVINTSCFPEIKGDNLAGVIRLNDFKASLTWSRIGN 424
              +D+    VL +S +  +  I +    S     + + L G ++L+     L  S IG 
Sbjct: 119 YPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGP 178

Query: 425 LNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLA 483
             + + Q +M+ I+    LP +N  L++GFPLP P+   L N  +    ++++  +D+ 
Sbjct: 179 FPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVV 237

PyMOL of d1ewfa2

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		492
d1ewfa2		239	Bactericidal permeability-increasing protein, BPI	100.0
d1ewfa1		217	Bactericidal permeability-increasing protein, BPI	100.0

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=365.66  Aligned_cols=234  Identities=22%  Similarity=0.379  Sum_probs=220.2

Q ss_pred             ceeEEeEeEEEEeccCccccCcccCCCCCCcCCCCCCceEEEEechhhhhhHHHHHHhcCeeeEEe--cccCCCc--ccc
Q 011148          249 SSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLN  324 (492)
Q Consensus       249 ~~i~~~l~g~~~~~~~~~~~p~~~~~~p~~~~~~~~~~Ml~i~lSey~~NS~l~~~~~~g~l~~~v--~~iP~~~--~ln  324 (492)
                      +++++++||+||+.+++..+|+  ..+|.+. +++.++|+++++|||++||++|+||++|.|++++  +++|+.+  .||
T Consensus         1 ~sl~~~~kG~f~~~~~~~~~pf--~~~~~~~-p~~~~~M~~~~isey~~nS~~~~~~~ag~l~~~it~~~ip~~~~~~l~   77 (239)
T d1ewfa2           1 ETLDVQMKGEFYSENHHNPPPF--APPVMEF-PAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLT   77 (239)
T ss_dssp             SEEEEEECCEEECSSCCCCCSS--CCCCCCC-CCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSB
T ss_pred             CccccceeEEEEeCCCCCCCCC--CCCCcCC-CCCCCcEEEEEEcHHHHHHHHHHHHHCCCeEEEEChhhccccccCccc
Confidence            5899999999999999988886  3334444 4667899999999999999999999999999999  6899875  799


Q ss_pred             ccchhhccHhHHhcCCCCCeEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEeCCE
Q 011148          325 TSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINV-LDSSEVIPVACISLVINTSCFPEIKGDN  403 (492)
Q Consensus       325 Ts~~~~~~P~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~v-~~~~~~~~v~~l~~~~~~~~~~~~~~~~  403 (492)
                      |+|++.++|+++++|||+++.++++++++|.++++++++++.+.+.+++++ .++++..++++++++++++++++++++|
T Consensus        78 T~~~~~liP~l~~~ypn~~l~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~~~k  157 (239)
T d1ewfa2          78 TKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNR  157 (239)
T ss_dssp             HHHHHTTSSSHHHHSTTCBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCEEEEEEECSSE
T ss_pred             HHHHHHHhHHHHHHCCCCcEEEEEEeCCCCEEEEecCcEEEEEEEEEEEEEeCCCCceeEEEEEEEEEEEEEEEEEeCCE
Confidence            999999999999999999999999999999999999999999999999975 6677889999999999999999999999


Q ss_pred             EEEEEEeeeEEEEeeeeccCCcchHHHHHHHHHHHhhccHHHHhhhccccccCCCCCCeeEeecEEEEECCEEEEEEeee
Q 011148          404 LAGVIRLNDFKASLTWSRIGNLNMHIFQSMMSTILKTGFLPYINAHLRRGFPLPLPSGFTLENAEIFCTNSWVVVCSDLA  483 (492)
Q Consensus       404 l~~~l~l~~~~l~l~~S~iG~~~~~~L~~~l~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~  483 (492)
                      +++++++.++++++++|.+|.+++..|+.+++.+++..++|.+|++|++|+|||.+.|+++.|+++.+++||+.+++|++
T Consensus       158 l~~~l~l~~~~l~l~~S~vG~~~~~~l~~~l~~~l~~~~lP~lN~~L~~GipLP~~~~~~~~n~~i~~~~~~l~i~~D~~  237 (239)
T d1ewfa2         158 LVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVV  237 (239)
T ss_dssp             EEEEEEECCCEEEEEEESSCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEecceEEEEeecccCcccHHHHHHHHHHHHHHhhHHHHHHHhcCCeeCCCCCceeEECCEEEEECCEEEEEeccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ee
Q 011148          484 AL  485 (492)
Q Consensus       484 ~~  485 (492)
                      |+
T Consensus       238 ~~  239 (239)
T d1ewfa2         238 YK  239 (239)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

PyMOL of d1ewfa2

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure