Citrus Sinensis ID: 011162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MKMEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Secondary Structure (PSIPRED)
ccccccccccccccHHHccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHccccEEccccccHHHHHHHHHHcccccccHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHccccEEccccccHHHHHHHHHHccccHHHHHHcccEEccccccccHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccHHHHHccccccccccccccccEEEEEEcccccccccccccccccccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccEEcccccccccHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHcHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHEEEcHHHHcHHHHHHHHHccccHHHHHHccHHHcccHHHHccHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHccccccccccEcccccccc
Coil and Loop (DISEMBL)
MKMEALRSIHSSdlwslcgrafsftrsqpalpekLFFCrakfgdsgvngssslrvvPSTLLAAEKEEAKAVLTLFLKKqglskgvaartinksdLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVenfpnapppakqkavapvsppvstldskklKAISRVSeldssgdlrpQILYLIELGMDLEKIKLITrrfpafsyyslegkiKPVVEFLLdlgipkaqiptilgkrpqlcgislsenliptmtflenlgvdktQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVltrcpniiSYSIEEKLRPTAEYFRSLGVDVSVLLQrcpqslgcsieanlKPVTEFFLERGFTVEEIGTMISRFGalytfsltenlipkweffltmdydkselvkfpqyfgysleerikpryarvKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALsdgghengklkkfgigst
Flexible Loop (DISEMBL)
MKMEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGdsgvngssslRVVPSTLLAAEKEEAKAVLTLFlkkqglskgvAARTINKSDLFIDHLVSrlhsvhksrylvgrelttleIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAkqkavapvsppvstldskklkaisrvseldssgdlrpQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFpavltysrqKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEkalsdgghengklkkfgigst
Low Complexity Region (SEG)
MKMEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPStllaaekeeakavltlFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFpnapppakqkavapvsppvsTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Disordered region (IsUnstruct)
***********SDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENF*****************************************LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLK*************************
Disordered Region (DISOPRED)
***************************QPALPEKLFFCRAKFG****NGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDS************DSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSD**H*NGKL*KFGI***
Disordered Region (DISEMBL)
**********SSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAP*********************KLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Disordered Region (DISPRO)
************DLWSLCGRAFSFTRSQPALPEKLFFCRAKFGD*G**GSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGH*N*KL********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q96E29	417	mTERF domain-containing p	yes	no	0.363	0.429	0.241	7e-06
Q49AM1	385	mTERF domain-containing p	no	no	0.516	0.659	0.258	8e-06
Q8R3J4	412	mTERF domain-containing p	yes	no	0.400	0.478	0.232	2e-05
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.402	0.484	0.228	0.0001
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.359	0.437	0.226	0.0002
Q5R6G1	385	mTERF domain-containing p	no	no	0.516	0.659	0.251	0.0002

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)

Query: 254 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 313
           L  +   +++   + FL+++G++  Q    + +  A+ +   + +K  V +L+    S  
Sbjct: 179 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 238

Query: 314 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 368
            + +++ + P ++++S+ E+L     +F+   +++SV     L+ R P+ L  S+E   +
Sbjct: 239 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 296

Query: 369 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 424
            +  + LE GF   EI  MI+R   + T     LTE     ++F    M      +VKFP
Sbjct: 297 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 352

Query: 425 QYFGYSLEERIKPRY 439
           Q F   L  ++K R+
Sbjct: 353 QVFNTRL-FKVKERH 366

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Homo sapiens (taxid: 9606)

>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens GN=MTERFD3 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 28/282 (9%)

Query: 176 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235
           L   +  ++  SS +    +  L +  +D+ KI    RR   +     E  ++ +   L 
Sbjct: 30  LACFTYTTDKQSSKENTRTVEKLYKCSVDIRKI----RRLKGWVLLEDETYVEEIANILQ 85

Query: 236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRFPAVL--T 292
           +LG  +  + +IL + P+   I  S   + T   L  L   ++ +  K+I++FP      
Sbjct: 86  ELGADETAVASILERCPE--AIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTI 143

Query: 293 YSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK---LRPTAEYFRSLG---- 345
             ++  K  V F  E+GL    I ++LT  PN+    +E+    +R   E +  +G    
Sbjct: 144 KDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEA 203

Query: 346 ---VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF-GALYTF---S 398
              V +  LL + P  L  S  A +K   EF  E+GFT  EI  ++S+  G L+     S
Sbjct: 204 NMKVWLLKLLSQNPFILLNSPTA-IKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRS 262

Query: 399 LTENLIPKWEFFLTMDYDKSELV-KFPQYFGYS---LEERIK 436
           +  ++      F   D+D  +LV K P    YS   LEER++
Sbjct: 263 IQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQ 304

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.

Homo sapiens (taxid: 9606)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 14/211 (6%)

Query: 234 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
           L+ LG+  ++I         L  +   +++   + FL++LG++  Q    + +  A+ + 
Sbjct: 154 LVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSE 213

Query: 294 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV--- 350
             + +K  V +L     S   I +++   P ++S+S+E        + + L ++V     
Sbjct: 214 DLENLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRD 273

Query: 351 LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFF 410
           L+ R P+ L  S+E   + +  + LE GF   EI  M+ +   +    LT N     E F
Sbjct: 274 LVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKM----LTANKRKLTEIF 329

Query: 411 ----LTMDYDKSELVKFPQYFG---YSLEER 434
                 M+     +VKFPQ F    + ++ER
Sbjct: 330 DYVHNVMNIPHHIIVKFPQLFNTRVFKIKER 360

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 234 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
           L+ LG+  ++I         L  ++  +++   + FL++LG++  Q    + +  A+ + 
Sbjct: 151 LVQLGVDLSKIEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSE 210

Query: 294 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV--- 350
             + +K  V +L     S   I  ++   P ++S+S+ E+L     +F+   +++SV   
Sbjct: 211 DLENLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSV-ERLDNRLGFFQK-ELELSVKKT 268

Query: 351 --LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWE 408
             L+ R P+ L  S+E   + +  + LE GF   EI  M+++   + T +    L   ++
Sbjct: 269 RDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTAN-KRKLTETFD 327

Query: 409 FFLT-MDYDKSELVKFPQYFG---YSLEER 434
           +    M+     +VKFPQ F    + ++ER
Sbjct: 328 YVHNVMNIPHHIIVKFPQVFNTRVFKIKER 357

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 145 LVENFPNAPPPA------KQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYL 198
           L E++ + PP +      +++AV  ++ P+    S  L+     SE          +  L
Sbjct: 97  LCEDWDDVPPSSALEEISEEEAVKIIADPLLPPQSSTLRDYVDHSE---------TLTKL 147

Query: 199 IELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGIS 258
           + LG+DL +++   +          E  I  ++ FL D+GI   Q+   L K P + G  
Sbjct: 148 VHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEE 207

Query: 259 LSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGK 317
           L E L   + +L++      +  +++ R P +L +S +++   + F   E+GLS +    
Sbjct: 208 L-EALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSVERLDNRLGFFKNELGLSVKKTKD 266

Query: 318 VLTRCPNIISYSIE 331
           ++ R P +++  +E
Sbjct: 267 LVIRFPRLLTGKLE 280

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii GN=MTERFD3 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 28/282 (9%)

Query: 176 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235
           L   +  ++  SS +    +  L +  +D+ KI    RR   +     E  ++ +   L 
Sbjct: 30  LACFTYTTDRQSSKENTRTVEKLYKCSVDIRKI----RRLKGWVLLEDETYVEEIANILQ 85

Query: 236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRFPAVL--T 292
           +LG  +  +  IL + P+   I      + T   L  L   ++ +  K+I++FP      
Sbjct: 86  ELGADETAVANILERCPE--AIVCRPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTI 143

Query: 293 YSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK---LRPTAEYFRSLG---- 345
             ++  K  V F  E+GL    I ++LT   N+    +E+    +R   E + ++G    
Sbjct: 144 KDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPVEKNKQMVRILQESYLNVGGSEA 203

Query: 346 ---VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF-GALYTF---S 398
              V +  LL + P  L  S  A +K   EF  E+GFT  EI  ++S+  G L+     S
Sbjct: 204 NMKVWLLKLLSQNPFILLNSPTA-IKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRS 262

Query: 399 LTENLIPKWEFFLTMDYDKSELV-KFPQYFGYS---LEERIK 436
           +  ++      F   D+D  +LV K P    YS   LEER++
Sbjct: 263 IQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQ 304

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
255536969	436	conserved hypothetical protein [Ricinus	0.867	0.979	0.811	0.0
356511824	471	PREDICTED: uncharacterized protein LOC10	0.914	0.955	0.729	0.0
296090243	464	unnamed protein product [Vitis vinifera]	0.936	0.993	0.724	0.0
356511822	480	PREDICTED: uncharacterized protein LOC10	0.918	0.941	0.720	0.0
356573958	581	PREDICTED: uncharacterized protein LOC10	0.902	0.764	0.715	0.0
359488599	460	PREDICTED: uncharacterized protein LOC10	0.886	0.947	0.728	0.0
357449019	567	mTERF domain-containing protein [Medicag	0.924	0.802	0.668	1e-175
449448552	566	PREDICTED: uncharacterized protein LOC10	0.920	0.800	0.701	1e-174
449487899	469	PREDICTED: uncharacterized protein LOC10	0.920	0.965	0.701	1e-174
240255825	493	Mitochondrial transcription termination	0.936	0.935	0.658	1e-168

>gi|255536969|ref|XP_002509551.1| conserved hypothetical protein [Ricinus communis] gi|223549450|gb|EEF50938.1| conserved hypothetical protein [Ricinus communis]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/429 (81%), Positives = 378/429 (88%), Gaps = 2/429 (0%)

Query: 48  NGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSV 107
           NGS  LRVVP TLLAAEKEEAKAVLTLFLKKQGLS  VAART   SDLFIDHLV+RLHSV
Sbjct: 5   NGSVGLRVVPPTLLAAEKEEAKAVLTLFLKKQGLSNAVAARTTKSSDLFIDHLVARLHSV 64

Query: 108 HKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPP 167
           HKSRYLVGRELTTLEIRDAL PYLESLLEE+G+VLVDLVENF N  PP K K VA V+PP
Sbjct: 65  HKSRYLVGRELTTLEIRDALIPYLESLLEEHGSVLVDLVENFSN--PPDKGKPVALVTPP 122

Query: 168 VSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKI 227
             T++SKKLKA+SRVSE   +G L P ILYL++LGMDLE+IK IT RFPAF+YYSLEGKI
Sbjct: 123 KVTVNSKKLKAVSRVSETGPAGQLPPHILYLMDLGMDLEQIKGITSRFPAFAYYSLEGKI 182

Query: 228 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRF 287
           KPVVEFLLDLGI K  +PTI  +RPQLCGISLSENL PTMTFLENLGVDK QWAKVI RF
Sbjct: 183 KPVVEFLLDLGIRKTDLPTIFVRRPQLCGISLSENLKPTMTFLENLGVDKRQWAKVIYRF 242

Query: 288 PAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVD 347
           PA+LTYSRQKV+ TVDFL EMGLSAESIGK+LTRCPNIISYS+ +KLRPTAEYFRSLGVD
Sbjct: 243 PALLTYSRQKVELTVDFLNEMGLSAESIGKILTRCPNIISYSVNDKLRPTAEYFRSLGVD 302

Query: 348 VSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKW 407
           V+VLL RCPQ+ G S+EANLKPVTEFFLERG+++EEIGTMI R+GALYTFSL ENLIPKW
Sbjct: 303 VAVLLYRCPQTFGLSLEANLKPVTEFFLERGYSIEEIGTMIQRYGALYTFSLAENLIPKW 362

Query: 408 EFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLK 467
           +FFLTMDY K ELVKFPQYFGYSLEERIKPRYA VK  GVKLLLNQVLSLS  NF+ VLK
Sbjct: 363 DFFLTMDYSKEELVKFPQYFGYSLEERIKPRYALVKEAGVKLLLNQVLSLSYCNFDKVLK 422

Query: 468 KKIEKALSD 476
           KKI+K LS+
Sbjct: 423 KKIQKMLSE 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511824|ref|XP_003524622.1| PREDICTED: uncharacterized protein LOC100781900 isoform 2 [Glycine max]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/458 (72%), Positives = 382/458 (83%), Gaps = 8/458 (1%)

Query: 18  CGRAFS--FTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLF 75
           C R FS   TR+Q   P K+FFC+AK   SG++GS +L+VV  TLL AEKEEAKAVLTLF
Sbjct: 15  CTRFFSNTTTRAQLPFPAKVFFCQAK---SGIDGSLNLKVVSPTLLVAEKEEAKAVLTLF 71

Query: 76  LKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLL 135
           LKKQGLS  +AART  KSD FIDHLVSRLHS HKS YL GRELTTLEIRDAL PYLESL 
Sbjct: 72  LKKQGLSNAIAARTSKKSDHFIDHLVSRLHSKHKSWYLAGRELTTLEIRDALIPYLESLF 131

Query: 136 EEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELD-SSGDLRPQ 194
           EE+G++LVD+VEN+PN  PP K K+   V P    LDSKKLKA+SRVSE D   G+LRP 
Sbjct: 132 EEHGDILVDVVENYPN--PPGKDKSAVLVPPSNPVLDSKKLKAVSRVSETDPDGGNLRPH 189

Query: 195 ILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQL 254
           I+YL+ELGMD+E+I+ ITRRFP+F+YYSLEGKIKPVVEF L+LG+PK  IPTIL KRPQL
Sbjct: 190 IVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILTKRPQL 249

Query: 255 CGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAES 314
           CGISLSENL PTM F E+LGVDK QW KVI RFPA+LTYSR KV +++DFL E+GLS E 
Sbjct: 250 CGISLSENLKPTMKFFESLGVDKNQWPKVIYRFPALLTYSRPKVMESIDFLLELGLSEEG 309

Query: 315 IGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFF 374
           IGK+LTRCPNI+SYS+E+ LRPTA+YFRSLGVDV +LL RCPQ+ G SIE NLKPVTEFF
Sbjct: 310 IGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFF 369

Query: 375 LERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEER 434
           LERG+T+EEIGTMISR+GALYTFSLTENLIPKW+FFLT  Y KSELVKFPQYFGY+LEER
Sbjct: 370 LERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYNLEER 429

Query: 435 IKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEK 472
           IKPR+  +   GVKLLLNQVLSLS SNF+  LKKK++K
Sbjct: 430 IKPRFEIMTKSGVKLLLNQVLSLSSSNFDEALKKKMKK 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090243|emb|CBI40062.3| unnamed protein product [Vitis vinifera]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/476 (72%), Positives = 398/476 (83%), Gaps = 15/476 (3%)

Query: 3   MEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSS-SLRVVPSTLL 61
           M A   I SS+L SL    FS  R++   P K+ FC+AKF +SGV+GSS SLRVVP +LL
Sbjct: 1   MRAYSGIRSSELPSLSRGPFSIPRNRAYFPGKVSFCQAKFAESGVDGSSISLRVVPPSLL 60

Query: 62  AAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTL 121
           AAEKEEAKAVL+LFLKKQGLS  VAARTINKS+LFIDHLVSRLHSVHKSRYLVGRELTTL
Sbjct: 61  AAEKEEAKAVLSLFLKKQGLSNAVAARTINKSELFIDHLVSRLHSVHKSRYLVGRELTTL 120

Query: 122 EIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISR 181
           EIRDAL PYLE+L EE+G++LVD VENFPN P   K+  VAP           K+KA++R
Sbjct: 121 EIRDALIPYLETLFEEHGDILVDAVENFPNQP--DKEIPVAP-----------KIKAMAR 167

Query: 182 VSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK 241
           VSE+  SG+L P ILYL+ELG++L++IK +TRRFPAF YYSLEGKI PVV+FLLDLG+PK
Sbjct: 168 VSEVGPSGELPPNILYLLELGLELDQIKAMTRRFPAFPYYSLEGKIMPVVQFLLDLGVPK 227

Query: 242 AQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT 301
           + IP IL KRPQLCG+SLSEN+IPTM FLENLGVDK QWAKVI RFP  LTYSRQKVK T
Sbjct: 228 SGIPMILYKRPQLCGVSLSENIIPTMAFLENLGVDKKQWAKVIHRFPGFLTYSRQKVKAT 287

Query: 302 VDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGC 361
           VDFL EMGLSAESIGKVLTRCPNIISYS+E+KLRPTAEYFRSLGVDV++LL R P + G 
Sbjct: 288 VDFLEEMGLSAESIGKVLTRCPNIISYSVEDKLRPTAEYFRSLGVDVAILLHRSPPTFGL 347

Query: 362 SIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELV 421
           SIEANLKP+TEFFLE+GF++EE+ TMISR+G LYTFSL ++L PKWEFFLTMDY ++ELV
Sbjct: 348 SIEANLKPITEFFLEKGFSIEEVSTMISRYGPLYTFSLADSLGPKWEFFLTMDYPRTELV 407

Query: 422 KFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDG 477
           KFPQYFGYSLEERIKPRYA V+  GV+LLLNQVLSLS S F+  LK+K++K + DG
Sbjct: 408 KFPQYFGYSLEERIKPRYATVRESGVRLLLNQVLSLSESEFDKALKRKMKK-MHDG 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511822|ref|XP_003524621.1| PREDICTED: uncharacterized protein LOC100781900 isoform 1 [Glycine max]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/465 (72%), Positives = 383/465 (82%), Gaps = 13/465 (2%)

Query: 18  CGRAFS--FTRSQPALPEKLFFCRAKFGD-------SGVNGSSSLRVVPSTLLAAEKEEA 68
           C R FS   TR+Q   P K+FFC+AK  D       SG++GS +L+VV  TLL AEKEEA
Sbjct: 15  CTRFFSNTTTRAQLPFPAKVFFCQAK-SDLHGGVFYSGIDGSLNLKVVSPTLLVAEKEEA 73

Query: 69  KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALT 128
           KAVLTLFLKKQGLS  +AART  KSD FIDHLVSRLHS HKS YL GRELTTLEIRDAL 
Sbjct: 74  KAVLTLFLKKQGLSNAIAARTSKKSDHFIDHLVSRLHSKHKSWYLAGRELTTLEIRDALI 133

Query: 129 PYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELD-S 187
           PYLESL EE+G++LVD+VEN+PN  PP K K+   V P    LDSKKLKA+SRVSE D  
Sbjct: 134 PYLESLFEEHGDILVDVVENYPN--PPGKDKSAVLVPPSNPVLDSKKLKAVSRVSETDPD 191

Query: 188 SGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTI 247
            G+LRP I+YL+ELGMD+E+I+ ITRRFP+F+YYSLEGKIKPVVEF L+LG+PK  IPTI
Sbjct: 192 GGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTI 251

Query: 248 LGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYE 307
           L KRPQLCGISLSENL PTM F E+LGVDK QW KVI RFPA+LTYSR KV +++DFL E
Sbjct: 252 LTKRPQLCGISLSENLKPTMKFFESLGVDKNQWPKVIYRFPALLTYSRPKVMESIDFLLE 311

Query: 308 MGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANL 367
           +GLS E IGK+LTRCPNI+SYS+E+ LRPTA+YFRSLGVDV +LL RCPQ+ G SIE NL
Sbjct: 312 LGLSEEGIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNL 371

Query: 368 KPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYF 427
           KPVTEFFLERG+T+EEIGTMISR+GALYTFSLTENLIPKW+FFLT  Y KSELVKFPQYF
Sbjct: 372 KPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYF 431

Query: 428 GYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEK 472
           GY+LEERIKPR+  +   GVKLLLNQVLSLS SNF+  LKKK++K
Sbjct: 432 GYNLEERIKPRFEIMTKSGVKLLLNQVLSLSSSNFDEALKKKMKK 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573958|ref|XP_003555121.1| PREDICTED: uncharacterized protein LOC100775277 [Glycine max]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/450 (71%), Positives = 376/450 (83%), Gaps = 6/450 (1%)

Query: 24  FTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSK 83
           ++R+Q + P K+FFC+AK   SG +GS +L VV  TLL AEKEEAKAVLTLFLKKQGLS 
Sbjct: 133 YSRTQLSFPTKVFFCQAK---SGTDGSLNLEVVSPTLLVAEKEEAKAVLTLFLKKQGLSN 189

Query: 84  GVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLV 143
            +A RT  KSD FIDHLVSRLHS HKS YL GRELTTLEIRD L PYLESL EE+G++LV
Sbjct: 190 AIATRTSKKSDHFIDHLVSRLHSKHKSWYLAGRELTTLEIRDTLIPYLESLFEEHGDILV 249

Query: 144 DLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELD-SSGDLRPQILYLIELG 202
           ++VEN+PN  PP K K+  P+ P     DSKKLKA+SRVSE D   G+LRP I+YL++LG
Sbjct: 250 NVVENYPN--PPGKDKSAVPIPPSNPVSDSKKLKAVSRVSETDPDGGNLRPHIVYLMDLG 307

Query: 203 MDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSEN 262
           MD+E+I+ ITRRFP+F+YYSLEGKIKPVVEF L+LG+PK  I TIL KRPQLCGISLSEN
Sbjct: 308 MDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENILTILTKRPQLCGISLSEN 367

Query: 263 LIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRC 322
           L PTM F E+LGVDK QW KVI RFPA+LTYSR KV +++DFL E+GLS ESIGK+LTRC
Sbjct: 368 LKPTMKFFESLGVDKNQWPKVIYRFPALLTYSRPKVMESIDFLLELGLSEESIGKILTRC 427

Query: 323 PNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVE 382
           PNI+SYS+E+ LRPTA+YF SLGV+V VLL RCPQ+ G SIE NLKP TEFFLERG+T+E
Sbjct: 428 PNIVSYSVEDNLRPTAKYFHSLGVEVGVLLFRCPQNFGLSIENNLKPATEFFLERGYTLE 487

Query: 383 EIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARV 442
           EIGTMISR+GALYTFSLTENLIPKW+FFLT  Y KSELVKFPQYFGY+LEER+KPR+  +
Sbjct: 488 EIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYNLEERVKPRFTIM 547

Query: 443 KVHGVKLLLNQVLSLSGSNFENVLKKKIEK 472
           K +GVKLLLNQVLSLS SNF+  LKKK++K
Sbjct: 548 KKYGVKLLLNQVLSLSSSNFDEALKKKMKK 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488599|ref|XP_003633786.1| PREDICTED: uncharacterized protein LOC100262724 [Vitis vinifera]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/460 (72%), Positives = 384/460 (83%), Gaps = 24/460 (5%)

Query: 39  RAKFGDSGVNGSS-SLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFI 97
           RA   +SGV+GSS SLRVVP +LLAAEKEEAKAVL+LFLKKQGLS  VAARTINKS+LFI
Sbjct: 2   RAYSAESGVDGSSISLRVVPPSLLAAEKEEAKAVLSLFLKKQGLSNAVAARTINKSELFI 61

Query: 98  DHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAK 157
           DHLVSRLHSVHKSRYLVGRELTTLEIRDAL PYLE+L EE+G++LVD VENFPN P   K
Sbjct: 62  DHLVSRLHSVHKSRYLVGRELTTLEIRDALIPYLETLFEEHGDILVDAVENFPNQP--DK 119

Query: 158 QKAVAPVSPPVST--------------------LDSKKLKAISRVSELDSSGDLRPQILY 197
           +  VAPVS    +                    LDSKK+KA++RVSE+  SG+L P ILY
Sbjct: 120 EIPVAPVSSSSLSSSSSSSSLSSSSSSSSSNPKLDSKKIKAMARVSEVGPSGELPPNILY 179

Query: 198 LIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGI 257
           L+ELG++L++IK +TRRFPAF YYSLEGKI PVV+FLLDLG+PK+ IP IL KRPQLCG+
Sbjct: 180 LLELGLELDQIKAMTRRFPAFPYYSLEGKIMPVVQFLLDLGVPKSGIPMILYKRPQLCGV 239

Query: 258 SLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGK 317
           SLSEN+IPTM FLENLGVDK QWAKVI RFP  LTYSRQKVK TVDFL EMGLSAESIGK
Sbjct: 240 SLSENIIPTMAFLENLGVDKKQWAKVIHRFPGFLTYSRQKVKATVDFLEEMGLSAESIGK 299

Query: 318 VLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLER 377
           VLTRCPNIISYS+E+KLRPTAEYFRSLGVDV++LL R P + G SIEANLKP+TEFFLE+
Sbjct: 300 VLTRCPNIISYSVEDKLRPTAEYFRSLGVDVAILLHRSPPTFGLSIEANLKPITEFFLEK 359

Query: 378 GFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKP 437
           GF++EE+ TMISR+G LYTFSL ++L PKWEFFLTMDY ++ELVKFPQYFGYSLEERIKP
Sbjct: 360 GFSIEEVSTMISRYGPLYTFSLADSLGPKWEFFLTMDYPRTELVKFPQYFGYSLEERIKP 419

Query: 438 RYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDG 477
           RYA V+  GV+LLLNQVLSLS S F+  LK+K++K + DG
Sbjct: 420 RYATVRESGVRLLLNQVLSLSESEFDKALKRKMKK-MHDG 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449019|ref|XP_003594785.1| mTERF domain-containing protein [Medicago truncatula] gi|355483833|gb|AES65036.1| mTERF domain-containing protein [Medicago truncatula]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/465 (66%), Positives = 373/465 (80%), Gaps = 10/465 (2%)

Query: 22  FSFTRSQPALPE--KLFFCRAKFG-------DSGVNGSSSLRVVPSTLLAAEKEEAKAVL 72
           FS+T  +  LP   ++FF + K G        S  + S S++++P TLLAAEKEEAKAVL
Sbjct: 103 FSYTSIRTQLPSSTRVFFSQEKSGIPSIRALYSDTDESLSVKLLPPTLLAAEKEEAKAVL 162

Query: 73  TLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLE 132
           TLFLKK+GLS   AARTINKSD FIDHL+S+LHS HK+ YL GRELTTLEIRDAL  YLE
Sbjct: 163 TLFLKKRGLSNANAARTINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLE 222

Query: 133 SLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELD-SSGDL 191
           SL EE+G +LVD VEN+PN P   K  A  P   P   +DSKK+KA+SRVS +D + G+L
Sbjct: 223 SLYEEHGEILVDAVENYPNPPVKDKSDAPIPPPNPSPAVDSKKVKAVSRVSGIDPAEGNL 282

Query: 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKR 251
           RP I YL+ELGM+ ++++ I RRFPAF+YYSLEGKIKPVVEF L+LG+PK +I  IL KR
Sbjct: 283 RPHIAYLMELGMNTDQVRSIMRRFPAFAYYSLEGKIKPVVEFFLELGVPKEKIIIILTKR 342

Query: 252 PQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLS 311
           PQLCGISLS+NL PTM F E+LGVDK QWAKVI RFPA+LTYS QK+ +++DFL E G+S
Sbjct: 343 PQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESLDFLREFGVS 402

Query: 312 AESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVT 371
            E+IGK+LTRCP I+SYS+E+ LRPTA YFRSLGVDV +LL  CPQ+ G SIEAN+KPVT
Sbjct: 403 EENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGLSIEANIKPVT 462

Query: 372 EFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSL 431
           +FFLERG+T+EEIG MI R+G LYTFSLTENL+PKW++FLTMDY KSELVKFPQ+FGYSL
Sbjct: 463 QFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLTMDYPKSELVKFPQFFGYSL 522

Query: 432 EERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSD 476
           E+RIKPRY RVK+ GV+LLLNQVLSLS SNFE +L+KKI K   D
Sbjct: 523 EQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEILRKKIMKMQVD 567

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448552|ref|XP_004142030.1| PREDICTED: uncharacterized protein LOC101203240 [Cucumis sativus]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 320/456 (70%), Positives = 377/456 (82%), Gaps = 3/456 (0%)

Query: 19  GRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKK 78
           G   +  R Q +   KLF CR++  DS ++GS++L+VV   LL AEKEEAKAVLTLFLKK
Sbjct: 111 GSHITTQRVQVSFQRKLFSCRSR-SDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKK 169

Query: 79  QGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEY 138
           QGLS  +AARTINKSD FIDHL+ RLH +HKSRYLVGRELTTLEIRDAL PYLESL EE+
Sbjct: 170 QGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEH 229

Query: 139 GNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYL 198
           G  LV  VENFP+  P  K+K   PV    ST+D+KKLKAISRVSEL  +GDLRP+ILYL
Sbjct: 230 GTHLVHAVENFPS--PSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYL 287

Query: 199 IELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGIS 258
           IE G++L++IK ITRRFP+F+YYSLEGKIKPV+EF LDLG+PK+ IP IL KRPQLCGIS
Sbjct: 288 IEHGLNLDQIKEITRRFPSFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILYKRPQLCGIS 347

Query: 259 LSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKV 318
           LSENL PTM FLENLGVDK +WAKVI RFPA+LTYS+QKV+ T+ FLYE+GLS E +GKV
Sbjct: 348 LSENLKPTMKFLENLGVDKKKWAKVIYRFPAILTYSKQKVETTISFLYELGLSEERVGKV 407

Query: 319 LTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERG 378
           LTRCPNI SYS+EEKLRPTAEYF +LGVDV+VLL RCPQ+ G SIEANLKPVT+FFLERG
Sbjct: 408 LTRCPNITSYSVEEKLRPTAEYFHTLGVDVAVLLYRCPQTFGLSIEANLKPVTQFFLERG 467

Query: 379 FTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPR 438
           +++E++GTM SR+ ALY+FSL +NL+PKW+FFLTM Y K+EL+KFPQYFGYSLE RIKPR
Sbjct: 468 YSMEDVGTMTSRYAALYSFSLADNLVPKWDFFLTMGYSKAELIKFPQYFGYSLEGRIKPR 527

Query: 439 YARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKAL 474
           YA +K   V LLLNQ+L+LS SNF   + KK+ K L
Sbjct: 528 YAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLL 563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487899|ref|XP_004157856.1| PREDICTED: uncharacterized protein LOC101228690 [Cucumis sativus]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 320/456 (70%), Positives = 377/456 (82%), Gaps = 3/456 (0%)

Query: 19  GRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKK 78
           G   +  R Q +   KLF CR++  DS ++GS++L+VV   LL AEKEEAKAVLTLFLKK
Sbjct: 14  GSHITTQRVQVSFQRKLFSCRSR-SDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKK 72

Query: 79  QGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEY 138
           QGLS  +AARTINKSD FIDHL+ RLH +HKSRYLVGRELTTLEIRDAL PYLESL EE+
Sbjct: 73  QGLSNAIAARTINKSDSFIDHLLLRLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEH 132

Query: 139 GNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYL 198
           G  LV  VENFP+  P  K+K   PV    ST+D+KKLKAISRVSEL  +GDLRP+ILYL
Sbjct: 133 GTHLVHAVENFPS--PSIKEKTATPVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYL 190

Query: 199 IELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGIS 258
           IE G++L++IK ITRRFP+F+YYSLEGKIKPV+EF LDLG+PK+ IP IL KRPQLCGIS
Sbjct: 191 IEHGLNLDQIKEITRRFPSFAYYSLEGKIKPVIEFFLDLGVPKSDIPIILYKRPQLCGIS 250

Query: 259 LSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKV 318
           LSENL PTM FLENLGVDK +WAKVI RFPA+LTYS+QKV+ T+ FLYE+GLS E +GKV
Sbjct: 251 LSENLKPTMKFLENLGVDKKKWAKVIYRFPAILTYSKQKVETTISFLYELGLSEERVGKV 310

Query: 319 LTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERG 378
           LTRCPNI SYS+EEKLRPTAEYF +LGVDV+VLL RCPQ+ G SIEANLKPVT+FFLERG
Sbjct: 311 LTRCPNITSYSVEEKLRPTAEYFHTLGVDVAVLLYRCPQTFGLSIEANLKPVTQFFLERG 370

Query: 379 FTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPR 438
           +++E++GTM SR+ ALY+FSL +NL+PKW+FFLTM Y K+EL+KFPQYFGYSLE RIKPR
Sbjct: 371 YSMEDVGTMTSRYAALYSFSLADNLVPKWDFFLTMGYSKAELIKFPQYFGYSLEGRIKPR 430

Query: 439 YARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKAL 474
           YA +K   V LLLNQ+L+LS SNF   + KK+ K L
Sbjct: 431 YAIMKNSQVMLLLNQLLTLSESNFNKAVIKKVNKLL 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255825|ref|NP_567435.4| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|332658065|gb|AEE83465.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 308/468 (65%), Positives = 375/468 (80%), Gaps = 7/468 (1%)

Query: 3   MEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSS-SLRVVPSTLL 61
           M++L  +  S+++ +  R    TR+Q     +L F +   G    N    S R VP  L+
Sbjct: 1   MQSLSQLGPSEIFLVARREKPSTRAQLWFTGRLSFRQETNGIRLKNRVEFSPRPVPPNLI 60

Query: 62  AAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTL 121
           AAEKEEAKAVLTLF KKQGLS  +++R INKSDLFIDHLVSRLHSVHK+RYLVGRELTTL
Sbjct: 61  AAEKEEAKAVLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVGRELTTL 120

Query: 122 EIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVS--PPV----STLDSKK 175
           EIRD+L PYLE L EE+G++L +LV +FP+ P   +  A +PVS  PP     S  D++K
Sbjct: 121 EIRDSLIPYLEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDSAADTRK 180

Query: 176 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235
           L+A+SRVSELD+ G LRPQ LYL++LG++LE+IK ITR+F AF YYSL+GKIKPVVEFLL
Sbjct: 181 LRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLL 240

Query: 236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSR 295
           DLGIPK+ IPTIL KRPQ+CGISL++NL PTM FLE LG+DK QWAK+I RFPA+LTYSR
Sbjct: 241 DLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSR 300

Query: 296 QKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRC 355
           QK+  TV+FL + GL+ E IG++LTRCPNI+SYS+E+KLRPT EYFRSL VDV+VLL RC
Sbjct: 301 QKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRC 360

Query: 356 PQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDY 415
           PQ+ G SIE+NLKPVTEFFLE+GF ++EIG MISR+GALYTFSL EN++PKW++F TMDY
Sbjct: 361 PQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDY 420

Query: 416 DKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 463
            KSELVKFPQ+FGYSL+ERIKPRY  V+  GV+LLLNQVLSLSG  FE
Sbjct: 421 PKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFE 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.963	0.961	0.604	1.9e-147
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.481	0.837	0.323	3.4e-29
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.593	0.455	0.264	2.5e-28
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.554	0.538	0.289	2.2e-27
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.443	0.719	0.318	4.6e-24
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.512	0.426	0.282	9.7e-24
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.550	0.500	0.263	1.5e-22
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.485	0.717	0.277	8.2e-22
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.404	0.726	0.307	1.4e-21
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.432	0.429	0.272	2.2e-18

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
 Identities = 291/481 (60%), Positives = 358/481 (74%)

Query:     3 MEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSS-SLRVVPSXXX 61
             M++L  +  S+++ +  R    TR+Q     +L F +   G    N    S R VP    
Sbjct:     1 MQSLSQLGPSEIFLVARREKPSTRAQLWFTGRLSFRQETNGIRLKNRVEFSPRPVPPNLI 60

Query:    62 XXXXXXXXXXXXXFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTL 121
                          F KKQGLS  +++R INKSDLFIDHLVSRLHSVHK+RYLVGRELTTL
Sbjct:    61 AAEKEEAKAVLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVGRELTTL 120

Query:   122 EIRDALTPYLESLLEEYGNVLVDLVENFXXXXXXXXXXXXXXXXX------XXXTLDSKK 175
             EIRD+L PYLE L EE+G++L +LV +F                            D++K
Sbjct:   121 EIRDSLIPYLEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDSAADTRK 180

Query:   176 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235
             L+A+SRVSELD+ G LRPQ LYL++LG++LE+IK ITR+F AF YYSL+GKIKPVVEFLL
Sbjct:   181 LRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLL 240

Query:   236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSR 295
             DLGIPK+ IPTIL KRPQ+CGISL++NL PTM FLE LG+DK QWAK+I RFPA+LTYSR
Sbjct:   241 DLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSR 300

Query:   296 QKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRC 355
             QK+  TV+FL + GL+ E IG++LTRCPNI+SYS+E+KLRPT EYFRSL VDV+VLL RC
Sbjct:   301 QKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRC 360

Query:   356 PQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDY 415
             PQ+ G SIE+NLKPVTEFFLE+GF ++EIG MISR+GALYTFSL EN++PKW++F TMDY
Sbjct:   361 PQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDY 420

Query:   416 DKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALS 475
              KSELVKFPQ+FGYSL+ERIKPRY  V+  GV+LLLNQVLSLSG  FE V+KKK+ K +S
Sbjct:   421 PKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVS 480

Query:   476 D 476
             +
Sbjct:   481 N 481

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 80/247 (32%), Positives = 137/247 (55%)

Query:   233 FLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLT 292
             +L DL +   +    L   P L    +S +++   T L + G+ +    +++  FP +LT
Sbjct:    38 YLQDLNVDPHKA---LRVNPSLRSAPIS-SVVSVETLLSSTGLSRPAVGRILDMFPDLLT 93

Query:   293 YSRQ-KVKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLG-VDVS 349
                + ++   + FL  E+ +S + I K ++RCP ++  S++ +LRP   + ++LG V   
Sbjct:    94 SDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD 153

Query:   350 VLLQRCPQSLGCSIEANLKPVTEFFLER-GFTVEEIGTMISRFGALYTFSLTENLIPKWE 408
              +  R    L  ++E  L P  E+  E  GFT EE+  M+ R  AL T+S+  NL+PK E
Sbjct:   154 TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVE 213

Query:   409 FFLT-MDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFEN-VL 466
             FF+  M  D  EL +FPQYF +SLE +IKPR+  +K HG+ + L+++L +S   F + +L
Sbjct:   214 FFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWLL 273

Query:   467 KKKIEKA 473
             + ++  A
Sbjct:   274 ELRLRSA 280

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 2.5e-28, P = 2.5e-28
 Identities = 80/303 (26%), Positives = 158/303 (52%)

Query:   179 ISRVSELDSSG--DLRPQILYLIELGMDLEKIKLITRRFPAF-SYYSLEGKIKPVVEFLL 235
             + R  EL S    +++ ++ + +++GM+      +   +P    ++S +   K +  +L 
Sbjct:   302 VGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKI-NYLK 360

Query:   236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSR 295
             + G+   ++  +L  +P L G S+ E   P + +   LG+ K    +++   P +     
Sbjct:   361 EFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDL 420

Query:   296 QK-VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGV---DVSV 350
             +K +   V FL EMG+  E+IG +L + P++++ S+ +K+RP   +  +  GV   D+  
Sbjct:   421 EKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGK 480

Query:   351 LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFF 410
             ++   P  LGCSI   L+P   +++  G    ++G MI+ F  L  +++ +NL PK+ + 
Sbjct:   481 VIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYL 539

Query:   411 L-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKK 469
               TM     +L++FP++F YSLE RI PR+  +  + V   L  +L+ +   FE  ++ K
Sbjct:   540 RRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDK 599

Query:   470 IEK 472
             +E+
Sbjct:   600 VER 602

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 83/287 (28%), Positives = 153/287 (53%)

Query:   190 DLRPQILYLIELGMDLEKIKL--ITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTI 247
             +L P + +L   G+D+EK  L  +  ++P    + LEG +   V +L+ +G+    I  +
Sbjct:   179 ELAPVVKFL--RGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPM 236

Query:   248 LGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQK-VKQTVDFLY 306
             + + P L G+ +   + P + +L ++G+ K   A+++++   ++ Y+ ++ VK  VD L 
Sbjct:   237 VTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLI 296

Query:   307 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGC 361
               G+  E +  ++ + P I+   ++ K+  T +YF SL + +       ++++ PQ +  
Sbjct:   297 SFGVKKELLPLLIAQYPQILGLPVKAKMS-TQQYFFSLKLKIDPEGFARVVEKMPQIVSL 355

Query:   362 SIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLT-MDYDKSEL 420
                  +KP+ EF L R F VE+I  M+ R   +   S  E +   + F+ T M     EL
Sbjct:   356 KQNVIMKPI-EFLLGRAFQVEDIAKMVVRCPQILC-SRVELMKNSYYFYKTEMGRPMKEL 413

Query:   421 VKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLK 467
             V++P+YF YSLE RIKPRY +++  G++  LN  L+ S   FE  L+
Sbjct:   414 VEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQ 460

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 71/223 (31%), Positives = 119/223 (53%)

Query:   248 LGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYS-RQKVKQTVDFLY 306
             L   P LC   L +++   + FL++ G+      +++   P +LT   R ++     FL 
Sbjct:    73 LSLNPCLCSAPL-DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLS 131

Query:   307 -EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV-DVSVLLQRCPQSLGCSIE 364
              ++ +   +  +V+ +CP ++  S+E++L+P   Y + LG+ D+  L  + P  L  S+E
Sbjct:   132 NDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVE 191

Query:   365 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVK-F 423
               L P   F    GF+  E   MI R  AL+TFS+  N  PK ++F++    K E +K F
Sbjct:   192 HTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEF 251

Query:   424 PQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVL 466
             PQYF +SLE+RIKPR+      G++L L+ +L  +   FE +L
Sbjct:   252 PQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 9.7e-24, P = 9.7e-24
 Identities = 73/258 (28%), Positives = 132/258 (51%)

Query:   209 KLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMT 268
             KL+ + +P     S++     +  F     + K  I   + + P L G S S N+   + 
Sbjct:   319 KLLLK-YPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGCSAS-NMEMMVK 376

Query:   269 FLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY 328
               + LGV   +  KVI + P +L    Q+  + V FL ++G   E +G++L RCP I   
Sbjct:   377 EFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLKVVCFLEDLGFQKEIVGQILCRCPEIFGC 436

Query:   329 SIEEKLRPTAEYFRSLGVDVSV---LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIG 385
             SIE+ L+    +    GV  +    ++++ P+ L    +  + P  ++ +E G +  EI 
Sbjct:   437 SIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIA 496

Query:   386 TMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKV 444
              MI +F  +  +S+ + L PK+EF + +M+    E++++P+YF YSLE+RIKPR+  +K 
Sbjct:   497 FMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKG 556

Query:   445 HGVKLLLNQVLSLSGSNF 462
               ++  L ++L  +   F
Sbjct:   557 RNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 74/281 (26%), Positives = 139/281 (49%)

Query:   190 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILG 249
             DL P + YL  L +    +  +  R+P    + LEG +   V +L+ +G+ + +I  IL 
Sbjct:   214 DLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILT 273

Query:   250 KRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQK-VKQTVDFLYEM 308
             + P++ G+ ++  + P + +LE LG+ +   A++I++ P +L +     VK  V  L + 
Sbjct:   274 RYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDF 333

Query:   309 GLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSL----GVDVSVLLQRCPQSLGCSIE 364
              +   S+  ++ + P II   ++ KL    +   S       D+  L++R PQ +  S  
Sbjct:   334 NVRETSLPSIIAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSES 393

Query:   365 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIP-KWEFFLT-MDYDKSELVK 422
               LK + +F  + GF++++   M+   G     +L   ++   +E+F   M     +LV 
Sbjct:   394 PMLKHI-DFLTKCGFSIDQTREMV--IGCPQVLALNLGIMKLSFEYFQKEMKRPLQDLVD 450

Query:   423 FPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 463
             FP +F Y LE  +KPR+ ++   G+K  L  +L+ S   FE
Sbjct:   451 FPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFE 491

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 8.2e-22, P = 8.2e-22
 Identities = 70/252 (27%), Positives = 127/252 (50%)

Query:   222 SLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLS--ENLIPTMTFLENLGVDKTQ 279
             +LE  I   + +L  LGI      T++ + P L   +LS  E+++  MT    +      
Sbjct:    68 TLESSIHEKLIYLDSLGI---DFLTLINRHPPLLSTALSAVESVVDYMT-TPPINFTLQD 123

Query:   280 WAKVIQRFPAVLT--YSRQKVKQTVDFLYEMGL-SAESIGKVLTRCPNIISYSIEEKLRP 336
             + +++   P +LT   +   +      L E+G+ S   + + L R P +++ S++ +LRP
Sbjct:   124 FRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRP 183

Query:   337 TAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYT 396
             T  + + +G+   +   +    L CS++  L P  ++F + GF+      M  RF  L+ 
Sbjct:   184 TLYFLQRIGI---LDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   397 FSLTENLIPKWEFFLT-MDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVL 455
             +S+ EN  PK ++ +  M  D  E+++FPQYF +SLE RIKPR+      GV+  L  +L
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVML 300

Query:   456 SLSGSNFENVLK 467
               + + F + L+
Sbjct:   301 KTNEAGFRDTLE 312

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 63/205 (30%), Positives = 108/205 (52%)

Query:   263 LIPTMTFLENLGVDKTQWAKVIQRFPAVL--TYSRQKVKQTVDFLY-EMGLSAESIGKVL 319
             ++  +  L++ G+    + +++   P +   T+   K+    DFL  E+G SAE    ++
Sbjct:    65 ILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLI 124

Query:   320 TRCPNIISYSIEEKLRPTAEYFRSLGV-DVSVLLQRCPQSLGCSIEANLKPVTEFFLERG 378
               CPNI+   +E  LRPT  Y + LGV +++   +     L   +E  L+    F    G
Sbjct:   125 VNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIG 183

Query:   379 FTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKP 437
             F  EE   +  R  A++ +S+ +NL PK+EF +  M+ +  EL KFPQYF +SL +RI+P
Sbjct:   184 FEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRP 243

Query:   438 RYARVKVHGVKLLLNQVLSLSGSNF 462
             R+  +K   V++ L+++L      F
Sbjct:   244 RHWHLKKKNVRVSLSRMLMWGDQKF 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 61/224 (27%), Positives = 116/224 (51%)

Query:   197 YLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCG 256
             YL+ +G+    IK +  R P    Y++E  +K  + FL+ LGIP ++I  I+   P L  
Sbjct:   225 YLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFS 284

Query:   257 ISLSENLIPTMTFL-ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY---EMGLSA 312
              S+  +L PT+ +L E +G+ +T   KV+Q  P +L   R  +     +++   E+G   
Sbjct:   285 YSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILV-QRLDITWNTRYMFLSKELGAPR 343

Query:   313 ESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV---DVSVLLQRCPQSLGCSIEANLKP 369
             +S+ K++ + P ++ YSI++   P   + RS+G+   D+  +L    Q L  S+E NLKP
Sbjct:   344 DSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKP 403

Query:   370 VTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTM 413
                + +       E+  +++++    + SL + + P+  F + +
Sbjct:   404 KYMYLVNE--LNNEVH-ILTKYPMYLSLSLDQRIRPRHRFLVEL 444

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-36
pfam02536	345	pfam02536, mTERF, mTERF	2e-34
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	5e-19
pfam02536	345	pfam02536, mTERF, mTERF	5e-13
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	3e-04
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	0.003

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  139 bits (352), Expect = 4e-36
 Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 8/280 (2%)

Query: 190 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILG 249
           DL P + YL  L +  + I  +  R+P    + LEG +   V +L+ +G+    I  +L 
Sbjct: 159 DLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLT 218

Query: 250 KRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQ-KVKQTVDFLYEM 308
           + P++ G+ +  N+ P + +LE+LG+ +   A+++++ P +L +  +  VK  V+ L E 
Sbjct: 219 RFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEF 278

Query: 309 GLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGV---DVSVLLQRCPQSLGCSIE 364
           G+  E++  V+ + P+I+   ++ KL     +  S L +   D   ++++ PQ +  +  
Sbjct: 279 GVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRN 338

Query: 365 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLT-MDYDKSELVKF 423
             LK V EF   RGF+ +++  M+ R   +   +L E + P  EFF   M     ELV+F
Sbjct: 339 VALKHV-EFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEF 396

Query: 424 PQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 463
           P YF Y LE RIKPRY RV   G+K  L   L+ S   FE
Sbjct: 397 PAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFE 436

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  132 bits (333), Expect = 2e-34
 Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 45/338 (13%)

Query: 169 STLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIK 228
            +L S  ++    +   D+  +L+P++ +L   G    ++  I    P          I 
Sbjct: 11  DSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSIS 70

Query: 229 PVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRF 287
            V +FL  + +      + L K P+      + N I  ++ L  LGV  K  ++ +I R 
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRP 130

Query: 288 PAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV- 346
             V    ++  ++++  + EMG    +  +V+ + P ++ YS ++ ++P  E+ +SLG  
Sbjct: 131 RPVC--GKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFS 188

Query: 347 --DVSVLLQRCPQSLGCSIEANLK--------------------------------PVTE 372
             DV  +L++CP+ LG S +  L+                                   E
Sbjct: 189 VEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIE 248

Query: 373 FFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLT-MDYDKSELVKFPQYFGYSL 431
           F L  GF+ EEI  M+ R   L   S  E +  K EF +  M++   ELV+FPQ FGYSL
Sbjct: 249 FLLGLGFSREEIAKMVKRCPQLLGLS-VEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSL 307

Query: 432 EERIKPRYARVKV---HGVKLL--LNQVLSLSGSNFEN 464
           E+RIKPR   VK     G  +L  L+ +L  +   F  
Sbjct: 308 EKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 61/213 (28%), Positives = 119/213 (55%), Gaps = 9/213 (4%)

Query: 184 ELDSSGD-LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKA 242
           EL S+ D +R ++ +L +LG+ +E I      +P     S++  + PV+++L  LG+ ++
Sbjct: 84  ELPSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRS 139

Query: 243 QIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT- 301
            +P +L + PQ+   S+  +L P + +L+ L V +    +V++R+P +L +  +    T 
Sbjct: 140 SLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTS 199

Query: 302 VDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV---DVSVLLQRCPQS 358
           V +L  +G++   IG +LTR P I+   +   ++P  +Y  SLG+    V+ +L++ P  
Sbjct: 200 VAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYI 259

Query: 359 LGCSIEANLKPVTEFFLERGFTVEEIGTMISRF 391
           LG  +E  +KP  E  LE G   E + ++I+++
Sbjct: 260 LGFDLEETVKPNVECLLEFGVRKEALPSVIAQY 292

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 9/249 (3%)

Query: 237 LGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQ 296
           LG   + I TI+   P L G    +NL P + FL++ G  K++  K++   P +L     
Sbjct: 7   LGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGV 66

Query: 297 KVKQTV-DFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVL--LQ 353
           K   +V DFL ++ ++       L + P  +               R LGV   +L  L 
Sbjct: 67  KSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLL 126

Query: 354 RCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTM 413
                  C  E   +   +  +E GF       +I++   L  +S  + + P  EF  ++
Sbjct: 127 ISRPRPVCGKE-VFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSL 185

Query: 414 DYDKSELV----KFPQYFGYSLEERIKPRYARVKVHGVKLL-LNQVLSLSGSNFENVLKK 468
            +   ++     K P+  G S +++++ +        ++ L + + +    S  E  +  
Sbjct: 186 GFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILN 245

Query: 469 KIEKALSDG 477
           KIE  L  G
Sbjct: 246 KIEFLLGLG 254

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 282 KVIQRFPAVLTYSRQKVKQTVDFLYEMGLS 311
           K++++FP +L YS +K+K  V+FL E+G S
Sbjct: 2   KIVKKFPQILGYSEKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 332 EKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF 391
           + +R   E+   LG+ +  +    P  LGCS++ N+ PV ++  + G T   +  ++ R+
Sbjct: 90  DVMRERVEFLHKLGLTIEDIN-EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRY 148

Query: 392 GALYTFSLTENLIPKWEFFLTMDYDKSE----LVKFPQYFGYSLE 432
             +   S+  +L P  ++   +D  + +    L ++P+  G+ LE
Sbjct: 149 PQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLE 193

Length = 487

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 317 KVLTRCPNIISYSIEEKLRPTAEYFRSLGVD 347
           K++ + P I+ YS E+KL+P  E+ + LG  
Sbjct: 2   KIVKKFPQILGYS-EKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.94
KOG1267	413	consensus Mitochondrial transcription termination	99.82
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.53
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.53
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	92.67
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	80.39

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=5.9e-57  Score=479.40  Aligned_cols=385  Identities=25%  Similarity=0.452  Sum_probs=346.9

Q ss_pred             HHHHHHHHH--HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhh
Q 011162           60 LLAAEKEEA--KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEE  137 (492)
Q Consensus        60 ~~~~~~~~a--~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls  137 (492)
                      +.+++++++  ++.+.+||..-|+....+.+.-.  |.-++++++                        ++.||.++|++
T Consensus        52 ~~~~~~~~~~~~~~~~~~L~~lgi~~~~l~~~~~--p~~~~~~~~------------------------~l~~L~s~G~~  105 (487)
T PLN03196         52 LLEMKKEKLVNREKVLDFLRGIGIDPDELDGLEL--PSTVDVMRE------------------------RVEFLHKLGLT  105 (487)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHcCCCchhhhccCC--CccHHHHHH------------------------HHHHHHHcCCC
Confidence            777766655  88899999999999998866422  223444444                        45788888888


Q ss_pred             hhhhHHHHHhcCCCCCCcccccCccCCCCCcCCCChHHHHhc-------cccccCCCCCChHHHHHHHHhCCCCHHHHHH
Q 011162          138 YGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAI-------SRVSELDSSGDLRPQILYLIELGMDLEKIKL  210 (492)
Q Consensus       138 ~~~~ia~~V~~~P~lL~~~~~~~~~~~~~~l~~~~~~~~~~~-------~r~l~~~~~~~l~~~l~~L~~lG~s~~~i~~  210 (492)
                      .++ |+    ++|.+|.+++++++.|++.+|..+|++..+ +       ++++..+.+.++.|+++||+++|++.++|.+
T Consensus       106 ~~~-i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~-i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~  179 (487)
T PLN03196        106 IED-IN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSS-LPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPR  179 (487)
T ss_pred             hHH-hc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHH-HHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            866 65    688888888888888888888877777654 3       3455555577899999999999999999999


Q ss_pred             HHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCcc
Q 011162          211 ITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAV  290 (492)
Q Consensus       211 ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~i  290 (492)
                      ++.++|.+|++++++.+.|+++||.++|++.++|++++.++|++|+++++++++|+++||+++|++.+++.+++.++|++
T Consensus       180 ~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~i  259 (487)
T PLN03196        180 VLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYI  259 (487)
T ss_pred             HHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccch-hhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCcch---hhhccccccccccch
Q 011162          291 LTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSV---LLQRCPQSLGCSIEA  365 (492)
Q Consensus       291 L~~s~e-kl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~~~---il~r~P~iL~~sle~  365 (492)
                      ++++.+ ++++++++|.++|++++++..++.++|.+++++.++++.++++||. ++|++...   ++.++|+++++| ++
T Consensus       260 L~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~  338 (487)
T PLN03196        260 LGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RN  338 (487)
T ss_pred             eEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HH
Confidence            999988 7999999999999999999999999999999998889999999996 79998754   678999999999 57


Q ss_pred             hhhHHHHHHHHcCCCHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHHHHHHH
Q 011162          366 NLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKV  444 (492)
Q Consensus       366 ~L~~r~~fL~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~  444 (492)
                      ++.++++||+++|++.+++..|+.++|++|++| .++|++|++||+ +||++.++|++||++|+||+|+||+|||++|+.
T Consensus       339 kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S-~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~  417 (487)
T PLN03196        339 VALKHVEFLRGRGFSAQDVAKMVVRCPQILALN-LEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAK  417 (487)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhCCceeecc-HHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHH
Confidence            899999999999999999999999999999999 599999999999 899999999999999999999999999999999


Q ss_pred             hccccChhhhhcCChHhHHHHHHHHHHHhccCCC
Q 011162          445 HGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGG  478 (492)
Q Consensus       445 lg~~~~l~~~L~~Sd~~F~~~~~~~~~~l~~~~~  478 (492)
                      .|.++++.++|.+||++|+++|+.+|.|...-+.
T Consensus       418 kGl~~sL~~~L~~sd~~F~~r~v~~y~e~~~~~~  451 (487)
T PLN03196        418 KGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEMEP  451 (487)
T ss_pred             cCCCCCHHHHhccCHHHHHHHHhhhcccccccCC
Confidence            9999999999999999999999999988666554

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=4.6e-45  Score=375.30  Aligned_cols=330  Identities=34%  Similarity=0.572  Sum_probs=235.8

Q ss_pred             HHHHHhhhhhhhhHHHHHhcCCCCCCcccccCccCCCCCcCCCChHHHHhccc-------cccCCCCCChHHHHHHHHhC
Q 011162          129 PYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISR-------VSELDSSGDLRPQILYLIEL  201 (492)
Q Consensus       129 afLe~lGls~~~~ia~~V~~~P~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~r-------~l~~~~~~~l~~~l~~L~~l  201 (492)
                      ++|+.+|++..+ |..+++++|.+|.+++++++.|...++..+|++..+ +++       ++..+.+.++.|.++||.++
T Consensus         2 ~~~~~~gf~~~~-i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~-i~~il~~~P~il~~s~~~~i~p~~~~L~~~   79 (345)
T PF02536_consen    2 DLLKNHGFSDSQ-ISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSD-IAKILSKNPQILSRSLEKNIIPVFDFLKSI   79 (345)
T ss_dssp             HHHHHHHHHTS--HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHH-HHHHHHH-GGGGGS--HHHHHHHHHHHTTT
T ss_pred             hHHHHcCCCHHH-HHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHH-HHHHHHhChHHHhccchhhHHHHHHHHHHH
Confidence            689999999966 999999999999999888888888888877777554 333       44444467788888999998


Q ss_pred             CCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHH
Q 011162          202 GMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWA  281 (492)
Q Consensus       202 G~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~  281 (492)
                      |++++++.+++.++|.++..+.++++.+++++|+++|++.+.+.+++...|.++...  +++.+.++++.++|++++++.
T Consensus        80 ~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~  157 (345)
T PF02536_consen   80 GLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIG  157 (345)
T ss_dssp             SS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHC
T ss_pred             cCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhc
Confidence            888888999888889888887766788899999999998877888888888766544  678888888888899998888


Q ss_pred             HHHHhCCccccc-cchhhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCcchhhhccccccc
Q 011162          282 KVIQRFPAVLTY-SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLG  360 (492)
Q Consensus       282 kll~~~P~iL~~-s~ekl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~~~il~r~P~iL~  360 (492)
                      +++..+|.++.. +.+.++++++||+++|++.+++.+++.++|.++..+.++.+++...++...|.....++.++|.++.
T Consensus       158 ~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~  237 (345)
T PF02536_consen  158 RVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILS  237 (345)
T ss_dssp             CCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------T
T ss_pred             ccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccc
Confidence            888888865554 4456889999998899999999999999999998887666666555555566555577888899998


Q ss_pred             cccchhhhHHHHHHHHcCCCHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHH
Q 011162          361 CSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRY  439 (492)
Q Consensus       361 ~sle~~L~~r~~fL~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~  439 (492)
                      ++ ++++.++++||+++|++.+|+.+|+.++|.+|++|. +++++|++||. +||++.++|+++|++|+||+|+||+|||
T Consensus       238 ~~-~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~  315 (345)
T PF02536_consen  238 LS-EEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRY  315 (345)
T ss_dssp             HH-HHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHH
T ss_pred             cc-hHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHH
Confidence            88 568999999999999999999999999999999995 67999999999 7999999999999999999999999995


Q ss_pred             ---HHHHHhc--cccChhhhhcCChHhHHH
Q 011162          440 ---ARVKVHG--VKLLLNQVLSLSGSNFEN  464 (492)
Q Consensus       440 ---~~L~~lg--~~~~l~~~L~~Sd~~F~~  464 (492)
                         ++++..|  .++++.+||.+||++|++
T Consensus       316 ~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  316 EVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence               5555667  667889999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=8e-43  Score=371.24  Aligned_cols=344  Identities=22%  Similarity=0.396  Sum_probs=300.3

Q ss_pred             hHHhHhHHHHHHHhhhhhhhhHHHHHhcCCCCCCcccccCccCCCCCcCCCChHHHH--hccccccCCCCCChHHHHHHH
Q 011162          121 LEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLK--AISRVSELDSSGDLRPQILYL  198 (492)
Q Consensus       121 ~~~~davlafLe~lGls~~~~ia~~V~~~P~lL~~~~~~~~~~~~~~l~~~~~~~~~--~~~r~l~~~~~~~l~~~l~~L  198 (492)
                      ..++..|+.||+++|+...+ +.++.      +.++++ .+.+++.+|..+|++..+  .-+.++..+...++.|+++||
T Consensus        60 ~~~~~~~~~~L~~lgi~~~~-l~~~~------~p~~~~-~~~~~l~~L~s~G~~~~~i~~~P~iL~~~v~~~l~Pvl~fL  131 (487)
T PLN03196         60 LVNREKVLDFLRGIGIDPDE-LDGLE------LPSTVD-VMRERVEFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYL  131 (487)
T ss_pred             hhhHHHHHHHHHHcCCCchh-hhccC------CCccHH-HHHHHHHHHHHcCCChHHhccCcHHhhcCHhhhhHHHHHHH
Confidence            55677899999999999755 54432      123333 345666677767766554  225566677789999999999


Q ss_pred             HhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChh
Q 011162          199 IELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKT  278 (492)
Q Consensus       199 ~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~  278 (492)
                      .++|++..+|.+++.++|.+|.+++++++.|+++||+++|++.++|++++.++|++|+++++.++.++++||+++|++++
T Consensus       132 ~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~  211 (487)
T PLN03196        132 EKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPR  211 (487)
T ss_pred             HHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             hHHHHHHhCCccccccch-hhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCc---chhhhc
Q 011162          279 QWAKVIQRFPAVLTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQR  354 (492)
Q Consensus       279 ~i~kll~~~P~iL~~s~e-kl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~---~~il~r  354 (492)
                      ++++++.++|++|+++.+ ++.++++||+++|++.++|.+++.++|++|+++++++++++++||.++|++.   ..++.+
T Consensus       212 ~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~  291 (487)
T PLN03196        212 DIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQ  291 (487)
T ss_pred             HHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            999999999999999988 5999999999999999999999999999999999889999999999999985   567889


Q ss_pred             cccccccccchhhhHHHHHHH-HcCCCHHHHHHHHhhccceeeecccccHHHHHHHHHHcCCChHHH----hhcCccccc
Q 011162          355 CPQSLGCSIEANLKPVTEFFL-ERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSEL----VKFPQYFGY  429 (492)
Q Consensus       355 ~P~iL~~sle~~L~~r~~fL~-~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~~~G~~~~~i----~~~P~lL~~  429 (492)
                      +|.++++++++++.++++||. ++|++.+++..++.++|.++++| ++++++|++||.++|++.++|    .++|++|+|
T Consensus       292 ~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~  370 (487)
T PLN03196        292 YPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILAL  370 (487)
T ss_pred             CCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeec
Confidence            999999999999999999996 79999999999999999999999 799999999999999999997    699999999


Q ss_pred             CcccccHhHHHHHHH-hcccc----ChhhhhcCChHhHHHHHHHHHHHhccCC
Q 011162          430 SLEERIKPRYARVKV-HGVKL----LLNQVLSLSGSNFENVLKKKIEKALSDG  477 (492)
Q Consensus       430 Sle~rIkpR~~~L~~-lg~~~----~l~~~L~~Sd~~F~~~~~~~~~~l~~~~  477 (492)
                      |. +.|+++++|+.. +|...    ...++++.|=   .+++..||+-+.++|
T Consensus       371 S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySL---EkRI~PR~~~L~~kG  419 (487)
T PLN03196        371 NL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGL---ESRIKPRYERVAKKG  419 (487)
T ss_pred             cH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccCh---hhhhHHHHHHHHHcC
Confidence            98 599999999874 55542    1234666552   267788888777655

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.97  E-value=3.3e-34  Score=294.71  Aligned_cols=312  Identities=28%  Similarity=0.450  Sum_probs=222.5

Q ss_pred             HHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhhhHHHHHhcCCCCC
Q 011162           74 LFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAP  153 (492)
Q Consensus        74 ~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~~ia~~V~~~P~lL  153 (492)
                      .++++.|.+.+|-.++.++.|..+..  + .                -..-.-.++||.++|+|..| |+.+|.++|.+|
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~--~-~----------------~~~l~pk~~fl~s~G~s~~~-i~~il~~~P~il   61 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLC--D-P----------------EKTLLPKLEFLRSLGFSSSD-IAKILSKNPQIL   61 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT----S----------------S-HHHHHHHHHHHTT--HHH-HHHHHHH-GGGG
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEe--c-C----------------ccchhHHHHHHHHCCCCHHH-HHHHHHhChHHH
Confidence            46778899999999998886666311  1 0                12233356799999999978 999999999999


Q ss_pred             CcccccCccCCCCCcCCCChHHHHhc------cccccCCCCCChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCH
Q 011162          154 PPAKQKAVAPVSPPVSTLDSKKLKAI------SRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKI  227 (492)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~------~r~l~~~~~~~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~l  227 (492)
                      +.+.+..+.|+...+.+++.+..+.+      ++++..+...++.++++||.++|++.+.+.+++...|..+...  +.+
T Consensus        62 ~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~  139 (345)
T PF02536_consen   62 SRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKI  139 (345)
T ss_dssp             GS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHH
T ss_pred             hccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHH
Confidence            99989999999999998887755422      2233344455899999999999999998889998888765554  589


Q ss_pred             HHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHH
Q 011162          228 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYE  307 (492)
Q Consensus       228 kp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~  307 (492)
                      ++.++++.++|++.+++.+++..+|+++..+.++++++++++|+++|++.+++.+++.++|.++..+.+++.+.+.++.+
T Consensus       140 ~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~  219 (345)
T PF02536_consen  140 KERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLS  219 (345)
T ss_dssp             HCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC----------
T ss_pred             HHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccc
Confidence            99999999999999999999999998888788899999999999999999999999999999999999986556666654


Q ss_pred             cCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCC---cchhhhccccccccccchhhhHHHHHHH-HcCCCHHH
Q 011162          308 MGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVD---VSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEE  383 (492)
Q Consensus       308 lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~---~~~il~r~P~iL~~sle~~L~~r~~fL~-~~Gls~~e  383 (492)
                      .|...++  .++.++|.++.++ ++++.++++||+++|++   +..|+.++|++|+++.+. ++++++||. ++|++.++
T Consensus       220 ~~~~~~~--~~i~~~p~il~~~-~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~m~~~~~~  295 (345)
T PF02536_consen  220 SGGVEEE--RVIKKFPQILSLS-EEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKEMGLPLEE  295 (345)
T ss_dssp             -------------------THH-HHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHCCT--HHH
T ss_pred             ccccccc--ccccccccccccc-hHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHHhCcCHHH
Confidence            4444434  7889999999999 57999999999999997   466889999999999765 999999998 59999999


Q ss_pred             HHHHHhhccceeeecccccHHHHHHHHH---HcCC
Q 011162          384 IGTMISRFGALYTFSLTENLIPKWEFFL---TMDY  415 (492)
Q Consensus       384 v~~mi~~~P~lL~~sle~~L~~k~~fL~---~~G~  415 (492)
                      +.    ++|.+|+||+|++|+||++++.   +.|.
T Consensus       296 i~----~~P~~l~~sLe~ri~PR~~~~~~l~~~g~  326 (345)
T PF02536_consen  296 IV----EFPQYLSYSLEKRIKPRYEVLKVLKSKGL  326 (345)
T ss_dssp             HH----HSCHHHCS-HHHHHHHHHHHHHTT--TTT
T ss_pred             Hh----hCCceeEechhhhhhhHHHHHHHHHHCcC
Confidence            87    9999999999999999965554   6773

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=243.61  Aligned_cols=343  Identities=26%  Similarity=0.416  Sum_probs=281.8

Q ss_pred             HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhhhHHHHHhc
Q 011162           69 KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVEN  148 (492)
Q Consensus        69 ~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~~ia~~V~~  148 (492)
                      +-..+|++.++|++...|..+++.    + ...+                  ..+|+.++.+|+++|++. ++|..++..
T Consensus        59 ~f~~s~~~~s~~~~~~~~~~~~~~----~-~~~~------------------~~~p~s~~~~l~s~g~~~-~~i~s~i~~  114 (413)
T KOG1267|consen   59 NFESSYLVDSLGLSIKLARKLSRE----V-SSED------------------SVNPSSVLSSLRSLGFTD-SQISSIILS  114 (413)
T ss_pred             CcceeeeccccccchhhHHHHHHH----H-Hhhh------------------ccCcHHHHHHHHhcCCch-hhccccccc
Confidence            556788889999888888888776    2 2222                  669999999999999998 559999999


Q ss_pred             CCCCCCcccccCccCCCCCcCCCChHHHH------hccccccCCCCCChHHHHHHHHhCC--CCHHHHHHHHHhCCceee
Q 011162          149 FPNAPPPAKQKAVAPVSPPVSTLDSKKLK------AISRVSELDSSGDLRPQILYLIELG--MDLEKIKLITRRFPAFSY  220 (492)
Q Consensus       149 ~P~lL~~~~~~~~~~~~~~l~~~~~~~~~------~~~r~l~~~~~~~l~~~l~~L~~lG--~s~~~i~~ll~~~P~lL~  220 (492)
                      +|++|.++.+..+.+....+...|.+...      .++.++......++.+.++|+.+++  .....+.+++...|..  
T Consensus       115 ~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~--  192 (413)
T KOG1267|consen  115 SPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSF--  192 (413)
T ss_pred             CchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccc--
Confidence            99999998888777777554443332221      1223443344578899999999974  7777777776555532  


Q ss_pred             cCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccch-hhh
Q 011162          221 YSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQ-KVK  299 (492)
Q Consensus       221 ~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~e-kl~  299 (492)
                      ...+..+. ++++++++|....++..++..+|+......  .+...+.++.++|+.+..  +++.+.|.++.++.+ ++.
T Consensus       193 ~~~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~  267 (413)
T KOG1267|consen  193 LLNENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLE  267 (413)
T ss_pred             cccccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHH
Confidence            22234566 899999999999999999999999876542  678888999999987776  578888999988666 699


Q ss_pred             hHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCC
Q 011162          300 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGF  379 (492)
Q Consensus       300 ~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gl  379 (492)
                      +++++|+.+|++.+|+..+++++|++|+++. +++..+++|+.+.   ..+ +.++|+++.++ +..+.++++|+...|+
T Consensus       268 ~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~-~~~~~~~~~~~~~---~~~-~~k~p~~l~~s-~~~l~~~ie~l~~~g~  341 (413)
T KOG1267|consen  268 PKVEVLKSLGFSREEIWKMVKKCPQILGYSV-KKNLKTTEYLLKN---PKH-ILKFPQLLRSS-EDKLKPRIEFLLSLGF  341 (413)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhCchheEeeh-hhhhHHHHHHHhc---chh-hhhhhhhhhcc-chhhhhhHHHHHHcCC
Confidence            9999999999999999999999999999996 5677888888765   333 77889999666 7899999999999999


Q ss_pred             CHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHHHHHHHhccc
Q 011162          380 TVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVK  448 (492)
Q Consensus       380 s~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~~  448 (492)
                      +..++..|++++|+++.+|+++.++.+.+|+. .|+++.+.++.+|.++.|++|+|+.||+....+++.+
T Consensus       342 ~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  342 SDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             cHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            99999999999999999997558889999998 7999999999999999999999999999999988765

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.82  E-value=3.5e-20  Score=195.35  Aligned_cols=265  Identities=24%  Similarity=0.384  Sum_probs=210.0

Q ss_pred             hHHHHhccccccCCCCCChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCC
Q 011162          173 SKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRP  252 (492)
Q Consensus       173 ~~~~~~~~r~l~~~~~~~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P  252 (492)
                      ......+.+-+......+..+.+++|+++|++..+|.+++..+|.++..+.++.+.|+..+|+..|++...+.+++...|
T Consensus        73 ~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~  152 (413)
T KOG1267|consen   73 IKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVP  152 (413)
T ss_pred             hhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccH
Confidence            33333344555566678899999999999999999999999999999999999999999999999999999999999989


Q ss_pred             ccccCCccCchHHHHHHHHHhC--CChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhHhhhhhcCcceeeccc
Q 011162          253 QLCGISLSENLIPTMTFLENLG--VDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSI  330 (492)
Q Consensus       253 ~lL~~s~e~~l~~~v~~L~~lG--v~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~  330 (492)
                      .+|+.+..+++.+.++|+++++  .....+.+++...|.. ......+. +++++.++|+.+.++..++...|.++....
T Consensus       153 ~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~-~~~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~  230 (413)
T KOG1267|consen  153 KILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSF-LLNENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL  230 (413)
T ss_pred             HHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccc-cccccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh
Confidence            9999888789999999999985  5555555444444322 12233566 899999999999999999999999998773


Q ss_pred             hhhhhhhHHHHHhhCCCcc-hhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhhccceeeecccccHHHHHHH
Q 011162          331 EEKLRPTAEYFRSLGVDVS-VLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEF  409 (492)
Q Consensus       331 e~~L~~~v~fL~~lGl~~~-~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~f  409 (492)
                        .+...+.++..+|+++. .++.+.|.++.++.++++++++++|++.||+.+|+..|++++|.++++| ++++..+++|
T Consensus       231 --~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s-~~~~~~~~~~  307 (413)
T KOG1267|consen  231 --KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYS-VKKNLKTTEY  307 (413)
T ss_pred             --hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEee-hhhhhHHHHH
Confidence              78888899999998864 5777889999999999999999999999999999999999999999999 5665455555


Q ss_pred             HHHcCCChHHHhhcCcccccCcccccHhHHHHHHHhc
Q 011162          410 FLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHG  446 (492)
Q Consensus       410 L~~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg  446 (492)
                      +.+.   .+++.++|+++.++ +..+.+|++++...|
T Consensus       308 ~~~~---~~~~~k~p~~l~~s-~~~l~~~ie~l~~~g  340 (413)
T KOG1267|consen  308 LLKN---PKHILKFPQLLRSS-EDKLKPRIEFLLSLG  340 (413)
T ss_pred             HHhc---chhhhhhhhhhhcc-chhhhhhHHHHHHcC
Confidence            5422   22255555555444 235555555555444

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.53  E-value=0.0019  Score=41.39  Aligned_cols=11  Identities=45%  Similarity=0.685  Sum_probs=4.1

Q ss_pred             ccHHHHHHHHH
Q 011162          401 ENLIPKWEFFL  411 (492)
Q Consensus       401 ~~L~~k~~fL~  411 (492)
                      ++++++++||.
T Consensus        16 ~~l~~~~~~l~   26 (31)
T smart00733       16 KKLKPKVEFLK   26 (31)
T ss_pred             HHhhHHHHHHH
Confidence            33333333333

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.53  E-value=0.0015  Score=41.81  Aligned_cols=30  Identities=50%  Similarity=0.815  Sum_probs=23.8

Q ss_pred             hhhhccccccccccchhhhHHHHHHHHcCCC
Q 011162          350 VLLQRCPQSLGCSIEANLKPVTEFFLERGFT  380 (492)
Q Consensus       350 ~il~r~P~iL~~sle~~L~~r~~fL~~~Gls  380 (492)
                      .++.++|.+++++ +++++++++||+++|++
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGFS   31 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCCC
Confidence            4677788888888 77888888888888864

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=92.67  E-value=0.36  Score=49.71  Aligned_cols=202  Identities=18%  Similarity=0.269  Sum_probs=109.5

Q ss_pred             HHHHHh-CCCCHHHHHHHHHhCCceeecCc---CC----CHHHHHHHH-H-hCCCCCCcHHHHHhhCCccccCCccCch-
Q 011162          195 ILYLIE-LGMDLEKIKLITRRFPAFSYYSL---EG----KIKPVVEFL-L-DLGIPKAQIPTILGKRPQLCGISLSENL-  263 (492)
Q Consensus       195 l~~L~~-lG~s~~~i~~ll~~~P~lL~~~l---e~----~lkp~v~fL-~-~~Gls~~~I~~li~~~P~lL~~s~e~~l-  263 (492)
                      +.-+.. +|+....+...+.+||.++..-.   ..    .+-|...-| . +..+-.+.-..++.+=-.+|.++.+.++ 
T Consensus        40 l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlp  119 (335)
T PF11955_consen   40 LSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLP  119 (335)
T ss_pred             HHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCccc
Confidence            444444 79977899999999999886422   00    011222222 1 2211111112333333346767775554 


Q ss_pred             HHHHHHHH-HhCCChhhHHHHHHhCCccccccc-h---hhhhHHHHHHHcCCChHhHhhhh-----------------hc
Q 011162          264 IPTMTFLE-NLGVDKTQWAKVIQRFPAVLTYSR-Q---KVKQTVDFLYEMGLSAESIGKVL-----------------TR  321 (492)
Q Consensus       264 ~~~v~~L~-~lGv~~~~i~kll~~~P~iL~~s~-e---kl~~~v~fL~~lG~s~~ei~~~v-----------------~~  321 (492)
                      ..++..++ ++|+|++-...++.+||..|.... +   ..-+-+.+=.++.++.-|-....                 .+
T Consensus       120 L~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~  199 (335)
T PF11955_consen  120 LSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVS  199 (335)
T ss_pred             HHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeec
Confidence            44666665 799999999899999999887633 1   11111121112333332222221                 12


Q ss_pred             CcceeeccchhhhhhhHHHHHhhCC----------Ccch------hhhccccccccccchhh-hHHHHHHH-HcCCCHHH
Q 011162          322 CPNIISYSIEEKLRPTAEYFRSLGV----------DVSV------LLQRCPQSLGCSIEANL-KPVTEFFL-ERGFTVEE  383 (492)
Q Consensus       322 ~P~iL~~s~e~~L~~~v~fL~~lGl----------~~~~------il~r~P~iL~~sle~~L-~~r~~fL~-~~Gls~~e  383 (492)
                      +|.=+..  ..+.+..++-++++-+          ++++      .+.-.-.+|++.+|+++ ..++..|+ ++|++ +.
T Consensus       200 fp~G~~l--~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k  276 (335)
T PF11955_consen  200 FPKGFRL--KKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QK  276 (335)
T ss_pred             CCCCccc--cHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HH
Confidence            2222222  2455666666665532          2111      01001236677766553 34566666 68998 67


Q ss_pred             HHHHHhhccceeeecc
Q 011162          384 IGTMISRFGALYTFSL  399 (492)
Q Consensus       384 v~~mi~~~P~lL~~sl  399 (492)
                      +..|+.+||.|+-.|.
T Consensus       277 ~~~~l~rHPgIFYvS~  292 (335)
T PF11955_consen  277 FRRLLLRHPGIFYVSL  292 (335)
T ss_pred             HHHHHHhCCCeEEEec
Confidence            8889999999999994

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=80.39  E-value=4.4  Score=37.65  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHhCCc----eeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHH
Q 011162          193 PQILYLIELGMDLEKIKLITRRFPA----FSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMT  268 (492)
Q Consensus       193 ~~l~~L~~lG~s~~~i~~ll~~~P~----lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~  268 (492)
                      ..+..|+++|++-++|..++.....    ++...+ ..+...++-|+..   ...|..++...+.. .....-+....++
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~-~~l~~ei~~L~~~---~~~l~~ll~~~~~~-~~~~~V~~~~w~~  123 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGDDATDVLRRRL-AELNREIQRLRQQ---QRAIATLLKQPTLL-KEQRLVTKEKWVA  123 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCChhHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHhhc-cccccCCHHHHHH
Confidence            3467788999999999998865432    011011 1122222222221   22344444322222 1111122345566


Q ss_pred             HHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhHhhh
Q 011162          269 FLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKV  318 (492)
Q Consensus       269 ~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~~  318 (492)
                      .++..|+++++..+.=..    |.  ...=..-.+||.++|++++++..+
T Consensus       124 l~~~~g~~~~~m~~wh~~----fe--~~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         124 ILKAAGMDEADMRRWHIE----FE--KMEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHcCCChHHHHHHHHH----HH--HhCcHHHHHHHHHcCCCHHHHHHH
Confidence            667788887775332111    11  112234468899999999887643

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	492
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		2e-07
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		3e-07

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 254 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 313
           L  +   +++   + FL+++G++  Q    + +  A+ +   + +K  V +L+    S  
Sbjct: 32  LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 91
Query: 314 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 368
            + +++ + P ++++S+ E+L     +F+   +++SV     L+ R P+ L  S+E   +
Sbjct: 92  DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 149
Query: 369 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 424
            +  + LE GF   EI  MI+R   + T     LTE     ++F    M      +VKFP
Sbjct: 150 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 205
Query: 425 QYFGYSLEERIKPRY 439
           Q F   L  ++K R+
Sbjct: 206 QVFNTRL-FKVKERH 219

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Query: 254 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 313
           L  +   +++   + FL+++G++  Q    + +  A+ +   + +K  V +L+    S  
Sbjct: 60  LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 119
Query: 314 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 368
            + +++ + P ++++S+ E+L     +F+   +++SV     L+ R P+ L  S+E   +
Sbjct: 120 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 177
Query: 369 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 424
            +  + LE GF   EI  MI+R   + T     LTE     ++F    M      +VKFP
Sbjct: 178 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 233
Query: 425 QYFGYSL 431
           Q F   L
Sbjct: 234 QVFNTRL 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-56
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-21
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-06
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-45
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-25
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-16
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  187 bits (477), Expect = 2e-56
 Identities = 52/258 (20%), Positives = 113/258 (43%), Gaps = 16/258 (6%)

Query: 228 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRF 287
              ++ L+ LG+  ++I         L  +   +++   + FL+++G++  Q    + + 
Sbjct: 6   SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKN 65

Query: 288 PAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV- 346
            A+ +   + +K  V +L+    S   + +++ + P ++++S+E        + + L + 
Sbjct: 66  HAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELS 125

Query: 347 --DVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLI 404
                 L+ R P+ L  S+E   + +  + LE GF   EI  MI+R   + T +    L 
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLT 184

Query: 405 PKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLL---------LNQV 454
             ++F    M      +VKFPQ F   L  ++K R+  +   G             L+++
Sbjct: 185 ETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDKL 243

Query: 455 LSLSGSNF-ENVLKKKIE 471
           +S+    F E + K  ++
Sbjct: 244 VSIPDEIFCEEIAKASVQ 261

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 93.7 bits (233), Expect = 1e-21
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 187 SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL-DLGIPKAQIP 245
              +L+ ++ YL         +  + R+ P    +S+E ++   + F   +L +   +  
Sbjct: 72  DLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR 130

Query: 246 TILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL 305
            ++ + P+L   SL         +   LG    +   +I R P +LT ++ K+ +T DF+
Sbjct: 131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFV 190

Query: 306 Y-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSL 359
           +  M +    I     + P + +  +  K++    +   LG       +    SL
Sbjct: 191 HNVMSIPHHII----VKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISL 240

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 12/131 (9%)

Query: 365 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKF- 423
            +     +  +  G  + +I         L      +++     F   +  + ++L  F 
Sbjct: 3   VDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFL 62

Query: 424 ---PQYFGYSLEERIKPRYARVKVHGV-----KLLLNQVLSLSGSNFENVLKK--KIEKA 473
                 F   L E +K R A +            ++ +   L   + E +  +    +K 
Sbjct: 63  TKNHAIFSEDL-ENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKE 121

Query: 474 LSDGGHENGKL 484
           L     +   L
Sbjct: 122 LELSVKKTRDL 132

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  161 bits (409), Expect = 1e-45
 Identities = 59/315 (18%), Positives = 121/315 (38%), Gaps = 21/315 (6%)

Query: 171 LDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPV 230
           +D    +            + +   ++L+  G   E I  I  R+P     + E  +   
Sbjct: 31  VDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKR 89

Query: 231 VEFLLDLGIPKAQIPTILGKRPQLCGISLSE-NLIPTMTFLENLGVDKTQWAKVIQRFPA 289
            +    +     +I  IL + P+    S +  NL   + FL ++G+ +    +++   P 
Sbjct: 90  WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPR 149

Query: 290 VLTYSRQKVKQTVDFLYEMGLS------AESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 343
             + S    KQ V+FL   GLS      A+ + K++ + P I+  S  ++++   E+ RS
Sbjct: 150 TFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRS 208

Query: 344 LGVD-----VSVLLQRCPQSLGCS---IEANLKPVTEFFLERGFTVEEIGTMISRFGALY 395
                    + ++     + L  S      +   + E     G T EE+   +  +  + 
Sbjct: 209 TFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVI 268

Query: 396 TFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVL 455
             +  +    K +  +  +   S++++ P+    S+   +K R   +   G  L    + 
Sbjct: 269 FLAE-KKFNDKIDCLMEENISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLSTLNIT 326

Query: 456 SLSGS--NFENVLKK 468
            LS S   +E  LKK
Sbjct: 327 LLSWSKKRYEAKLKK 341

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  105 bits (263), Expect = 3e-25
 Identities = 42/251 (16%), Positives = 92/251 (36%), Gaps = 25/251 (9%)

Query: 213 RRFPAFSYYSLEGK---IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF 269
                   ++ + +    + +++ LL +G+    I     ++P +    +  N      F
Sbjct: 2   HMLFGVKCHNTDSEPLKNEDLLKNLLTMGVD---IDMARKRQPGVFHRMI-TNEQDLKMF 57

Query: 270 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYS 329
           L + G  K   A +I R+P  +T + + + +  D   ++  S   I  +L R P     S
Sbjct: 58  LLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRS 117

Query: 330 IEEK-LRPTAEYFRSLGV---DVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFT----- 380
                L    ++  S+G+    +  LL   P++   S++   K + EF    G +     
Sbjct: 118 NNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHND 176

Query: 381 -VEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKF-----PQYFGYSLEE 433
             + +  +I +   +   S T+ +    EF   T + +  EL+        +    S + 
Sbjct: 177 PADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDY 235

Query: 434 RIKPRYARVKV 444
             +      + 
Sbjct: 236 ARRSYANIKEK 246

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 54/336 (16%), Positives = 112/336 (33%), Gaps = 34/336 (10%)

Query: 25  TRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKG 84
             +  + P K           GV+   + +  P  +        + +   FL  +G SK 
Sbjct: 9   CHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPG-VFHRMITNEQDLKM-FLLSKGASKE 66

Query: 85  VAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVD 144
           V A  I++    I      L    +         + LEI + L    ES      N+ ++
Sbjct: 67  VIASIISRYPRAITRTPENLSK--RWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE 124

Query: 145 LVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMD 204
               F               S  ++     +L   +  +  +S    +  + +L   G+ 
Sbjct: 125 NNIKFL-------------YSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLS 171

Query: 205 L------EKIKLITRRFPAFSYYSLEGKIKPVVEFLLD-LGIPKAQIPTILGKRP----Q 253
           L      + ++ I  + P     S + ++K  +EFL     +   ++  ++         
Sbjct: 172 LGHNDPADFVRKIIFKNPFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILD 230

Query: 254 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 313
           L       +       L +LG  + +  K +  +P V+  + +K    +D L E  +S  
Sbjct: 231 LSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISIS 290

Query: 314 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVS 349
            I       P ++  S    L+   +   + G ++S
Sbjct: 291 QI----IENPRVLDSS-ISTLKSRIKELVNAGCNLS 321

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 53/291 (18%)

Query: 24  FTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSK 83
            TR+   L ++    R K   S +   + L   P +   +           FL   GL++
Sbjct: 79  ITRTPENLSKRWDLWR-KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTR 137

Query: 84  GVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLV 143
               R +  +     + +     + +                    +L++     G+   
Sbjct: 138 KCLCRLLTNAPRTFSNSLDLNKQMVE--------------------FLQAAGLSLGHN-- 175

Query: 144 DLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGM 203
                     P    + +   +P +    +K++K  + +  L S+ +L  +         
Sbjct: 176 ---------DPADFVRKIIFKNPFILIQSTKRVK--ANIEFLRSTFNLNSE--------- 215

Query: 204 DLEKIKLITRRFPAFSYYSLEG---KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLS 260
             E + LI          S +        + E L  LG  + ++   +   P +  ++  
Sbjct: 216 --ELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE- 272

Query: 261 ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLS 311
           +     +  L    +  +Q    I   P VL  S   +K  +  L   G +
Sbjct: 273 KKFNDKIDCLMEENISISQ----IIENPRVLDSSISTLKSRIKELVNAGCN 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 72/540 (13%), Positives = 145/540 (26%), Gaps = 202/540 (37%)

Query: 48  NGSSSLRVVPSTLLAAEKEEAKAVLTLFLKK--QGLSKGVAARTINKS---DLFIDHLVS 102
           +  S    +  TLL+ ++E  +  +   L+   + L   +       S    ++I+    
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RD 117

Query: 103 RLHSVHK--SRYLVGRELTTLEIRDALT-----PYLESLLEEYG------NVLV------ 143
           RL++ ++  ++Y V R    L++R AL        +  L+   G        +       
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LI--DGVLGSGKTWVALDVCLS 173

Query: 144 -DLVENFPN--------------------------APPPAKQKAVAPVSPPVSTLDSKKL 176
             +                                  P    ++    +  +     +  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA- 232

Query: 177 KAISRVSELDSSGDLRPQILYL--------IELGMDLE-KIKLITRRF---------PAF 218
                +  L  S      +L L             +L  KI L+T RF            
Sbjct: 233 ----ELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKI-LLTTRFKQVTDFLSAATT 286

Query: 219 SYYSLEGKIKPVVE------FLLDLGIPKAQIPTILGKRPQLCGIS-LSENLIPTMTFLE 271
           ++ SL+     +         L  L      +P       ++   +    ++I       
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNPRRLSII------- 333

Query: 272 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIE 331
                    A+ I+   A     +      +                      II  S+ 
Sbjct: 334 ---------AESIRDGLATWDNWKHVNCDKLT--------------------TIIESSLN 364

Query: 332 EKLRPTA--EYFRSLGV---DVSV----------------------------LLQRCPQS 358
             L P    + F  L V      +                            L+++ P+ 
Sbjct: 365 V-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 359 LGCSI-----EANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTM 413
              SI     E  +K   E+ L R        +++  +    TF  +++LIP +      
Sbjct: 424 STISIPSIYLELKVKLENEYALHR--------SIVDHYNIPKTFD-SDDLIPPYLD---- 470

Query: 414 DYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKA 473
            Y       F  + G+ L+      +         + L+         F   L++KI   
Sbjct: 471 QY-------FYSHIGHHLK---NIEHPERMTLFRMVFLD-------FRF---LEQKIRHD 510

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 76/489 (15%), Positives = 157/489 (32%), Gaps = 121/489 (24%)

Query: 69  KAVLTLFLKK----------QGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGREL 118
           K +L++F             Q + K +    ++K +  IDH++    +V  +  L     
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEE--IDHIIMSKDAVSGTLRL----F 68

Query: 119 TTLEIR--DALTPYLESLLE-EYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKK 175
            TL  +  + +  ++E +L   Y   L+  ++     P    +  +       +      
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 176 LKAISR---VSELDSS-GDLRPQILYLIELGM----------DLEKIKLITRRFPAFSYY 221
              +SR     +L  +  +LRP    ++  G+          D+     +  +     ++
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 222 -SLEGKIKP--VVEFLLDLGIPKAQIPTILGKRP-QLCGISLSEN--------LIPTMTF 269
            +L+    P  V+E L  L     QI      R      I L  +        L+ +  +
Sbjct: 187 LNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 270 LENLGV-DKTQWAKVIQRF----PAVLTYSRQK-VKQTVDFLYEMGLSAESIGKVLTRCP 323
              L V    Q AK    F      +LT +R K V   +       +S +     LT   
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTP-- 300

Query: 324 NIISYSIEEKLRPTAEYFRSLGVDVSVL-LQRC---PQSLGCSIEANLK--PVT-EFFLE 376
                  +E      +Y   L      L  +     P+ L   I  +++    T + +  
Sbjct: 301 -------DEVKSLLLKY---LDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKH 349

Query: 377 RGFTVEEIGTMIS-------------RFGALYTFSLTENL-IPK------W--------E 408
                +++ T+I               F  L  F    +  IP       W         
Sbjct: 350 --VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVM 405

Query: 409 FFLTMDYDKSELVKFPQYFGYS-----LEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 463
             +   +  S + K P+    S     LE ++K       +H  + +++        + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALH--RSIVDHYNIPKTFDSD 462

Query: 464 NVLKKKIEK 472
           +++   +++
Sbjct: 463 DLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 54/313 (17%), Positives = 101/313 (32%), Gaps = 100/313 (31%)

Query: 1   MKMEALRSIHSSDLWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNGSSSLRVVPSTL 60
           +  + L +I  S L  L          +PA   K+F   + F  S  +       +P+ L
Sbjct: 350 VNCDKLTTIIESSLNVL----------EPAEYRKMFDRLSVFPPS-AH-------IPTIL 391

Query: 61  LA-----AEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLH--SVHKS--- 110
           L+       K +   V+    K   + K     TI+   ++++  V   +  ++H+S   
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 111 RYLVGRELTTLEIRDALTPYLES-----------------LLEEYGNVLVDLVENFPNAP 153
            Y + +   T +  D + PYL+                   +  +  V +D    F    
Sbjct: 452 HYNIPK---TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RF---- 502

Query: 154 PPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITR 213
              +QK           +        +  S L++   L+    Y             I  
Sbjct: 503 --LEQK-----------IRHDSTAWNASGSILNTLQQLK---FYK----------PYICD 536

Query: 214 RFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENL 273
             P +     E  +  +++FL     PK +   I  K   L  I+L           E+ 
Sbjct: 537 NDPKY-----ERLVNAILDFL-----PKIEENLICSKYTDLLRIALMA---------EDE 577

Query: 274 GVDKTQWAKVIQR 286
            + +    K +QR
Sbjct: 578 AIFEEA-HKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 60/453 (13%), Positives = 136/453 (30%), Gaps = 133/453 (29%)

Query: 14  LWSLCGRAFSFTRSQPALPEKLF-FCRAK-FGDSGV----------------NGSSSLRV 55
           L S         + QP++  +++   R + + D+ V                     LR 
Sbjct: 94  LMS----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 56  VPS-----------TLLAAEKEEAKAVLTLFLKKQGLSKGV---AARTINKSDLFIDHLV 101
             +           T +A +   +  V             +     +  N  +  ++ L 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKM------DFKIFWLNLKNCNSPETVLEMLQ 203

Query: 102 SRLHSVHKSRYLVGRELTTLEIR-DALTPYLESLLEE--YGNVLVDL--------VENF- 149
             L+ +  +        + +++R  ++   L  LL+   Y N L+ L           F 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 150 --------------PNAPPPAKQKAVAPVSPPVSTLDSKKLKAI-SRVSELDSSGDLRPQ 194
                          +    A    +  +     TL   ++K++  +  +     DL  +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPRE 321

Query: 195 ILYLIELGMDLEKIKLITRRFPA-FSYY------SLEGKIKPVVEFL---------LDLG 238
           +L      + +  I    R   A +  +       L   I+  +  L           L 
Sbjct: 322 VLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 239 I-PK-AQIPTILGKRPQLC---GISLSENLIPTMTFLENLGVDKTQW------------- 280
           + P  A IPTIL     L       +  +++  +  L    + + Q              
Sbjct: 380 VFPPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 281 ------------AKVIQRFPAVLTY-SRQKVKQTVD---FLYEMG--LSAESIGKVLTRC 322
                         ++  +    T+ S   +   +D   + + +G  L      + +T  
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLF 493

Query: 323 PNI-ISYS-IEEKLRPTAEYFRSLGVDVSVLLQ 353
             + + +  +E+K+R  +  + + G  ++ L Q
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.98
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.94
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.24
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.66
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	87.99
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.81
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	85.84
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	82.02

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=7.3e-49  Score=402.07  Aligned_cols=307  Identities=19%  Similarity=0.255  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhhhhhhHHHHHhc
Q 011162           69 KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVEN  148 (492)
Q Consensus        69 ~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls~~~~ia~~V~~  148 (492)
                      ++++.+ |.+||++.++|.+++++    + |+.+                  ++++|+|++||+++|+++++ |+.+|.+
T Consensus        20 ~~~v~~-L~s~Gl~~~~~~~~~p~----l-~~~s------------------~~~~~~vl~fL~~~G~s~~~-i~~iv~~   74 (343)
T 3mva_O           20 EDLLKN-LLTMGVDIDMARKRQPG----V-FHRM------------------ITNEQDLKMFLLSKGASKEV-IASIISR   74 (343)
T ss_dssp             CCHHHH-HHHHTCCHHHHHHHCGG----G-GGCS------------------CCCHHHHHHHHHHTTCCHHH-HHHHHHH
T ss_pred             HHHHHH-HHHcCCCHHHHHHhCch----h-hccC------------------cccHHHHHHHHHHcCCCHHH-HHHHHHh
Confidence            444544 48888888888887666    2 4444                  77888888888888888866 8888888


Q ss_pred             CCCCCCcccccCccCCCCCcCCCChHHHHhccccccCCCCCChHHHHHHHHhCCCCHHHHHHHHHhCCc-eeecCcCCCH
Q 011162          149 FPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPA-FSYYSLEGKI  227 (492)
Q Consensus       149 ~P~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~r~l~~~~~~~l~~~l~~L~~lG~s~~~i~~ll~~~P~-lL~~~le~~l  227 (492)
                      +|.+|+.+                .               .++.|+++||.++|++.+++.+++.++|. +++.+.++++
T Consensus        75 ~P~lL~~~----------------~---------------~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l  123 (343)
T 3mva_O           75 YPRAITRT----------------P---------------ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNL  123 (343)
T ss_dssp             CGGGGGCC----------------H---------------HHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHH
T ss_pred             CcHHHhCC----------------H---------------HHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhH
Confidence            88877542                1               14678888888888888888888888888 4444432378


Q ss_pred             HHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCC------hhhHHHHHHhCCccccccchhhhhH
Q 011162          228 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVD------KTQWAKVIQRFPAVLTYSRQKVKQT  301 (492)
Q Consensus       228 kp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~------~~~i~kll~~~P~iL~~s~ekl~~~  301 (492)
                      +|+++||+++|++.++|++++.++|++++.++ +++++++++++++|++      .+.+.+++.++|.+++++.++++++
T Consensus       124 ~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~-e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~  202 (343)
T 3mva_O          124 ENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSL-DLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKAN  202 (343)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhCChhheeCH-HHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHH
Confidence            88888888888888888888888888888887 4558888888877664      6678888888888888887678888


Q ss_pred             HHHHH-HcCCChHhHhhhhhcC-cceeeccchhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHH----HH
Q 011162          302 VDFLY-EMGLSAESIGKVLTRC-PNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEF----FL  375 (492)
Q Consensus       302 v~fL~-~lG~s~~ei~~~v~~~-P~iL~~s~e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~f----L~  375 (492)
                      ++||+ ++|++++++..++.+. |.++..+.                                  +.+++++.|    ++
T Consensus       203 v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~----------------------------------~~l~~~~~~l~e~~~  248 (343)
T 3mva_O          203 IEFLRSTFNLNSEELLVLICGPGAEILDLSN----------------------------------DYARRSYANIKEKLF  248 (343)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHTTTGGGGGCCT----------------------------------THHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHhcCChHHhhccH----------------------------------HHHHHHHHHHHHHHH
Confidence            88888 5888888877777653 34444442                                  344444444    44


Q ss_pred             HcCCCHHHHHHHHhhccceeeecccccHHHHHHHHHHcCCChHHHhhcCcccccCcccccHhHHHHHHHhccccChh--h
Q 011162          376 ERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLN--Q  453 (492)
Q Consensus       376 ~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~~~~l~--~  453 (492)
                      ++|++.+|+..|+.++|.++++| +++|++|++||.+||++.++|+++|++|+||+| ||+|||++|+..|.++.+.  +
T Consensus       249 ~lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~  326 (343)
T 3mva_O          249 SLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNIT  326 (343)
T ss_dssp             TTTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHTTTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGG
T ss_pred             HcCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHHcCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcch
Confidence            79999999999999999999999 578999999999999999999999999999999 9999999999999998888  9


Q ss_pred             hhcCChHhHHHHHHH
Q 011162          454 VLSLSGSNFENVLKK  468 (492)
Q Consensus       454 ~L~~Sd~~F~~~~~~  468 (492)
                      ||++||++|+++|++
T Consensus       327 ~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          327 LLSWSKKRYEAKLKK  341 (343)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHhc
Confidence            999999999999875

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.3e-40  Score=329.92  Aligned_cols=242  Identities=26%  Similarity=0.413  Sum_probs=217.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHH
Q 011162          192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE  271 (492)
Q Consensus       192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~  271 (492)
                      .++++||.++|++.++|.+.....|.+|+++++++++|+++||+++|++..+|++++.++|++|++++++ ++++++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            5789999999999999987666666669999988999999999999999999999999999999999965 999999999


Q ss_pred             HhCCChhhHHHHHHhCCccccccchhhhhHHHHH-HHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCcch
Q 011162          272 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV  350 (492)
Q Consensus       272 ~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL-~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~~~  350 (492)
                      ++|++++++.+++.++|++++.+.+++.++++|| +++|++++++.+++.++|.+++++.+ +                 
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~-----------------  146 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-P-----------------  146 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-H-----------------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-H-----------------
Confidence            9999999999999999999999999999999999 58999999999999999988888853 3                 


Q ss_pred             hhhccccccccccchhhhHHHHHH-HHcCCCHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccc
Q 011162          351 LLQRCPQSLGCSIEANLKPVTEFF-LERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFG  428 (492)
Q Consensus       351 il~r~P~iL~~sle~~L~~r~~fL-~~~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~  428 (492)
                                      ++++++++ .++|++.+|+..|+.++|.++++| +++|++|++||. +||++.++|+++|++|+
T Consensus       147 ----------------~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~  209 (270)
T 3m66_A          147 ----------------VKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFN  209 (270)
T ss_dssp             ----------------HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred             ----------------HHHHHHHHHHHcCCCHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence                            34556655 479999999999999999999999 599999999998 89999999999999999


Q ss_pred             cCcccccHhHHHHHHHhccc---------cChhhhhcCChHhHHHHHHHHH
Q 011162          429 YSLEERIKPRYARVKVHGVK---------LLLNQVLSLSGSNFENVLKKKI  470 (492)
Q Consensus       429 ~Sle~rIkpR~~~L~~lg~~---------~~l~~~L~~Sd~~F~~~~~~~~  470 (492)
                      ||+| ||+|||.+++++|.+         +++.+++.+||++|+++|++.+
T Consensus       210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~  259 (270)
T 3m66_A          210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKAS  259 (270)
T ss_dssp             SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSC
T ss_pred             CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCC
Confidence            9999 999999999998763         4577899999999999986544

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=8.9e-34  Score=290.16  Aligned_cols=277  Identities=18%  Similarity=0.321  Sum_probs=243.0

Q ss_pred             ChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHH
Q 011162          190 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF  269 (492)
Q Consensus       190 ~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~  269 (492)
                      ..+.+++||.++|++.+++   ++.+|.++..+++ +.++.++||+++|++.++|++++.++|++|.+++ +++.++++|
T Consensus        18 ~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f   92 (343)
T 3mva_O           18 KNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL   92 (343)
T ss_dssp             --CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCHHHH---HHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence            3467899999999998775   4468999988884 7999999999999999999999999999999996 799999999


Q ss_pred             HHHhCCChhhHHHHHHhCCc-cccccch-hhhhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCC
Q 011162          270 LENLGVDKTQWAKVIQRFPA-VLTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVD  347 (492)
Q Consensus       270 L~~lGv~~~~i~kll~~~P~-iL~~s~e-kl~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~  347 (492)
                      |+++|++++++.+++.++|+ +++.+.+ ++.++++||+++|++.+++.+++.++|++|+++++ ++++++++|+++|++
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv~  171 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLS  171 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCCC
Confidence            99999999999999999999 5555554 79999999999999999999999999999999985 559999999987763


Q ss_pred             ---------cchhhhccccccccccchhhhHHHHHHH-HcCCCHHHHHHHHhhc-cceeeecccccHHHHHHHHH----H
Q 011162          348 ---------VSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIGTMISRF-GALYTFSLTENLIPKWEFFL----T  412 (492)
Q Consensus       348 ---------~~~il~r~P~iL~~sle~~L~~r~~fL~-~~Gls~~ev~~mi~~~-P~lL~~sle~~L~~k~~fL~----~  412 (492)
                               +..|+.++|.+++++ +++++++++||+ ++|++.+++..++.+. |.+++++ .+.++++++|+.    +
T Consensus       172 ~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~~  249 (343)
T 3mva_O          172 LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLFS  249 (343)
T ss_dssp             TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHHH
Confidence                     346888999999999 899999999999 5999999999999885 5899999 589999998886    5


Q ss_pred             cCCChHHH----hhcCcccccCcccccHhHHHHHHHhccccC----hhhhhcCChHhHHHHHHHHHHHhccCCCC
Q 011162          413 MDYDKSEL----VKFPQYFGYSLEERIKPRYARVKVHGVKLL----LNQVLSLSGSNFENVLKKKIEKALSDGGH  479 (492)
Q Consensus       413 ~G~~~~~i----~~~P~lL~~Sle~rIkpR~~~L~~lg~~~~----l~~~L~~Sd~~F~~~~~~~~~~l~~~~~~  479 (492)
                      +|++.+++    .++|.+|.+|.| +|+++++|+..+|....    ..++|..|-    ++++.||+.|.+.|++
T Consensus       250 lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i~~~P~~l~~sl----eri~~R~~~L~~~g~~  319 (343)
T 3mva_O          250 LGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQIIENPRVLDSSI----STLKSRIKELVNAGCN  319 (343)
T ss_dssp             TTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHHHHSGGGGGSCH----HHHHHHHHHHHTTTCC
T ss_pred             cCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHHHhCCHHHhcCH----HHHHHHHHHHHHCCCC
Confidence            99999886    799999999987 59999999998766432    235677774    4899999999999974

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.98  E-value=2.7e-33  Score=277.32  Aligned_cols=224  Identities=20%  Similarity=0.306  Sum_probs=196.3

Q ss_pred             HhHhHHHHHHHhhhhhhhhHHHHHhcCCCCCCcccccCccCCCCCcCCCChHHHHhccccccCCCCCChHHHHHHHHhCC
Q 011162          123 IRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELG  202 (492)
Q Consensus       123 ~~davlafLe~lGls~~~~ia~~V~~~P~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~r~l~~~~~~~l~~~l~~L~~lG  202 (492)
                      |...+++||.++|++..+ |.......|.+|+                              .+.+.++.|+++||.++|
T Consensus         4 ~~s~~l~~L~~lGv~~~~-i~k~p~~~p~lL~------------------------------~~~~~~l~~~l~fL~~lG   52 (270)
T 3m66_A            4 DHSETLQKLVLLGVDLSK-IEKHPEAANLLLR------------------------------LDFEKDIKQMLLFLKDVG   52 (270)
T ss_dssp             HHHHHHHHHHHTTCCHHH-HTTSHHHHHHHHT------------------------------CCHHHHTHHHHHHHHHHT
T ss_pred             cchHHHHHHHHcCCCHHH-Hhhccchhhhhhc------------------------------cChhhhHHHHHHHHHHcC
Confidence            345789999999999866 6333333333233                              333456799999999999


Q ss_pred             CCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHH-HHhCCChhhHH
Q 011162          203 MDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFL-ENLGVDKTQWA  281 (492)
Q Consensus       203 ~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L-~~lGv~~~~i~  281 (492)
                      ++.++|++++.++|.+|++++++ ++|+++||+++|++.++|++++.++|++|+++++ +++++++|| +++|++.+++.
T Consensus        53 ~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~  130 (270)
T 3m66_A           53 IEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR  130 (270)
T ss_dssp             CCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999987 9999999999999999999999999999999995 799999999 58999999999


Q ss_pred             HHHHhCCccccccchhhhhHHHHH-HHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCcchhhhcccccc
Q 011162          282 KVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSVLLQRCPQSL  359 (492)
Q Consensus       282 kll~~~P~iL~~s~ekl~~~v~fL-~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~~~il~r~P~iL  359 (492)
                      +++.++|++++++.+++.++++++ +++||+.+++..++.++|++|++|. ++++++++||. +||++..+|+ ++|.+|
T Consensus       131 ~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i~-~~P~~l  208 (270)
T 3m66_A          131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHIIV-KFPQVF  208 (270)
T ss_dssp             HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHHH-HCGGGG
T ss_pred             HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHHH-hCchHh
Confidence            999999999999999999999986 5999999999999999999999996 79999999996 6999988765 579999


Q ss_pred             ccccchhhhHHHHHHHH---cCCCHH
Q 011162          360 GCSIEANLKPVTEFFLE---RGFTVE  382 (492)
Q Consensus       360 ~~sle~~L~~r~~fL~~---~Gls~~  382 (492)
                      +||+| +++||+.||+.   .|+...
T Consensus       209 ~~Sle-ri~pR~~~l~~L~~~g~~~~  233 (270)
T 3m66_A          209 NTRLF-KVKERHLFLTYLGRAQYDPA  233 (270)
T ss_dssp             GSCHH-HHHHHHHHHHHHTCCCCCTT
T ss_pred             hCCHH-HHHHHHHHHHHhhccCCCCC
Confidence            99997 99999888875   455433

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.97  E-value=7.4e-32  Score=273.22  Aligned_cols=199  Identities=22%  Similarity=0.402  Sum_probs=161.3

Q ss_pred             HHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHH
Q 011162          227 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY  306 (492)
Q Consensus       227 lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~  306 (492)
                      ++..+.+|.++|+++.+|+++++.+|+++.    .++.+.+.+|..+|++.+++.++|.++|++|++|.+++.++++||+
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~  121 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ  121 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHH
Confidence            455667777777777777777777777653    4566777777777777777777777777777777777777777777


Q ss_pred             HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHH-HcCCCHHHHH
Q 011162          307 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIG  385 (492)
Q Consensus       307 ~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~-~~Gls~~ev~  385 (492)
                      ++|++.+++++++.++|++|+++.+                                  ++..++.+|. ++||+.+++.
T Consensus       122 ~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev~  167 (335)
T 4fp9_B          122 KLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQVT  167 (335)
T ss_dssp             HTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHHH
T ss_pred             HcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHHH
Confidence            7777777777777777766666642                                  3455566775 6899999999


Q ss_pred             HHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHHHHHHHhcc-------------ccCh
Q 011162          386 TMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV-------------KLLL  451 (492)
Q Consensus       386 ~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~-------------~~~l  451 (492)
                      .||.++|.+|++| +++|++|++||. +||++..+|++ |.+|+||++ ||+|||.||+.+|.             +++|
T Consensus       168 ~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL  244 (335)
T 4fp9_B          168 KILHSCPSVLRED-LGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL  244 (335)
T ss_dssp             HHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred             HHHHhCChhhhCC-HHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence            9999999999999 689999999999 89999999997 999999998 99999999999987             2458


Q ss_pred             hhhhcCChHhHHHHH
Q 011162          452 NQVLSLSGSNFENVL  466 (492)
Q Consensus       452 ~~~L~~Sd~~F~~~~  466 (492)
                      .+++.+||++||.++
T Consensus       245 ~~il~~sd~~F~~~v  259 (335)
T 4fp9_B          245 KDILRVSEAEFLART  259 (335)
T ss_dssp             HHHTTSCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHH
Confidence            999999999999885

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=234.06  Aligned_cols=181  Identities=18%  Similarity=0.355  Sum_probs=170.2

Q ss_pred             hHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHH
Q 011162          191 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFL  270 (492)
Q Consensus       191 l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L  270 (492)
                      +...+..|.++||++++|++++..+|.++.    .++.+++.+|..+|++.++|++++.++|++|++++ ++++++++||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHHH
Confidence            577889999999999999999999999874    35789999999999999999999999999999999 7899999999


Q ss_pred             HHhCCChhhHHHHHHhCCccccccchhhhhHHHHHH-HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCc
Q 011162          271 ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDV  348 (492)
Q Consensus       271 ~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~-~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~  348 (492)
                      +++|++.+++.+++.++|++++++.+++..++.+|. ++||+.+++..||.++|.||.+|. ++|+++++||. .||++.
T Consensus       121 ~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl~~  199 (335)
T 4fp9_B          121 QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKH  199 (335)
T ss_dssp             HHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCCCH
T ss_pred             HHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999996 899999999999999999999995 69999999998 699999


Q ss_pred             chhhhccccccccccchhhhHHHHHHHHcCCC
Q 011162          349 SVLLQRCPQSLGCSIEANLKPVTEFFLERGFT  380 (492)
Q Consensus       349 ~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls  380 (492)
                      ..|+.  |.+|+||++ +|++|+.||+.+|.-
T Consensus       200 ~eIvk--P~~l~ySLe-RIkpRH~fL~~lG~~  228 (335)
T 4fp9_B          200 PDIVK--SEYLQYSLT-KIKQRHIYLERLGRY  228 (335)
T ss_dssp             HHHHH--TTGGGSCHH-HHHHHHHHHHHHTSC
T ss_pred             HHccc--cchhhccHH-HHHHHHHHHHHcCCc
Confidence            99884  999999997 999999999999973

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.24  E-value=9.8e-11  Score=102.17  Aligned_cols=160  Identities=23%  Similarity=0.431  Sum_probs=134.0

Q ss_pred             HHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHhhCCCc---chhhhccccccccccchhhhHHHHHHHH-
Q 011162          301 TVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQRCPQSLGCSIEANLKPVTEFFLE-  376 (492)
Q Consensus       301 ~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~lGl~~---~~il~r~P~iL~~sle~~L~~r~~fL~~-  376 (492)
                      .+.-+--+|+.++-+.-++.+.|+++...+. .++.+..||+.+|+..   ..++.-||.++... ...+...+..|++ 
T Consensus        36 iisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr-qqdindtvrllkek  113 (239)
T 4fzv_B           36 IISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEK  113 (239)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHh
Confidence            3444445788888888888888888888864 6788888888888764   34667788888887 3567778888884 


Q ss_pred             cCCCHHHHHHHHhhccceeeecccccHHHHHHHHH-HcCCChHHHhhcCcccccCcccccHhHHHHHHHhcc--------
Q 011162          377 RGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV--------  447 (492)
Q Consensus       377 ~Gls~~ev~~mi~~~P~lL~~sle~~L~~k~~fL~-~~G~~~~~i~~~P~lL~~Sle~rIkpR~~~L~~lg~--------  447 (492)
                      +=|+..++.+++..+|.++.-++ ..++.|+.|-. .||..+.+|++. .+|.||+. +|+.||-++..+|.        
T Consensus       114 clftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkg  190 (239)
T 4fzv_B          114 CLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKG  190 (239)
T ss_dssp             SCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSS
T ss_pred             HHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccC
Confidence            78899999999999999999996 89999999987 999999999984 78999996 99999999999986        


Q ss_pred             -----ccChhhhhcCChHhHHHH
Q 011162          448 -----KLLLNQVLSLSGSNFENV  465 (492)
Q Consensus       448 -----~~~l~~~L~~Sd~~F~~~  465 (492)
                           +..+++++..|+.+|..+
T Consensus       191 qtqipnpllkdilrvseaeflar  213 (239)
T 4fzv_B          191 QTQIPNPLLKDILRVSEAEFLAR  213 (239)
T ss_dssp             CCSSCCCCHHHHHTSCHHHHHHH
T ss_pred             CccCCChHHHHHHHHhHHHHHHH
Confidence                 346889999999999877

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.66  E-value=1.1e-07  Score=82.90  Aligned_cols=149  Identities=19%  Similarity=0.402  Sum_probs=124.8

Q ss_pred             CHHHHHHHHHhCCCCCCcHHHHHhhCCccccCCccCchHHHHHHHHHhCCChhhHHHHHHhCCccccccchhhhhHHHHH
Q 011162          226 KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL  305 (492)
Q Consensus       226 ~lkp~v~fL~~~Gls~~~I~~li~~~P~lL~~s~e~~l~~~v~~L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL  305 (492)
                      .+-..+.-|.-+|++++-+.-++.+.|++|.... -.++.+-.+++.+|+..+.+.+++..+|.++++..+.+...+..|
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrll  110 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLL  110 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHH
Confidence            3444566667789999999999999999998776 678888999999999999999999999999999999999999999


Q ss_pred             H-HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH-hhCCCcchhhhccccccccccchhhhHHHHHHHHcCC
Q 011162          306 Y-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGF  379 (492)
Q Consensus       306 ~-~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~-~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gl  379 (492)
                      + .+-++..++.+++..||.++..+. ..++-++.|.- .||+.-.+|+.  ...+.||+ ..++.|.-||..+|-
T Consensus       111 kekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk--seylqysl-tkikqrhiylerlgr  182 (239)
T 4fzv_B          111 KEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK--SEYLQYSL-TKIKQRHIYLERLGR  182 (239)
T ss_dssp             HHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH--TTGGGSCH-HHHHHHHHHHHHHTC
T ss_pred             HHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH--HHHHHHHH-HHHHHHHhHHHHhcc
Confidence            8 688999999999999999998886 47887777765 78887666654  34677776 678888888877774

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=87.99  E-value=5.5  Score=43.22  Aligned_cols=26  Identities=15%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHH----HcCCChHHHhhhhcc
Q 011162           67 EAKAVLTLFLK----KQGLSKGVAARTINK   92 (492)
Q Consensus        67 ~a~~~~~~~l~----t~GLt~~~A~~~s~~   92 (492)
                      .|-.+|..++.    ..|||++|-.+|+.|
T Consensus       203 qAL~av~~l~~~L~~~~~ls~~qVvaIAsn  232 (1047)
T 3ugm_A          203 QALETVQRLLPVLCQAHGLTPAQVVAIASH  232 (1047)
T ss_dssp             HHHHHHHHHSHHHHHSSCCCHHHHTTTTTS
T ss_pred             hHHHHHHHHHHHHhhhcCCCHHHHHHHhhc
Confidence            45555555553    368999998888775

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.81  E-value=0.95  Score=32.66  Aligned_cols=44  Identities=18%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             hhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhh
Q 011162          331 EEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISR  390 (492)
Q Consensus       331 e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~  390 (492)
                      ++.+...+.||+.            |.+-..+    +..++.||++.|++.+||..++.+
T Consensus        10 e~li~~Av~FL~d------------p~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           10 EPLIATAVKFLQN------------SRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHHHHHHHHHC------------TTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC------------hhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3456666666653            4444333    556899999999999999988765

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=85.84  E-value=1.1  Score=45.45  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             CChHHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCCCCC
Q 011162          189 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK  241 (492)
Q Consensus       189 ~~l~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~Gls~  241 (492)
                      ......++.|.+.||+++++.+.++...        +++..-++||.+ |++.
T Consensus       166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~-gip~  209 (368)
T 1oqy_A          166 SEYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT-GIPG  209 (368)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT-SSTT
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh-CCCc
Confidence            3467889999999999999999988742        244556788853 4543

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=82.02  E-value=1.8  Score=32.78  Aligned_cols=46  Identities=20%  Similarity=0.363  Sum_probs=32.8

Q ss_pred             hhhhhhhHHHHHhhCCCcchhhhccccccccccchhhhHHHHHHHHcCCCHHHHHHHHhhcc
Q 011162          331 EEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFG  392 (492)
Q Consensus       331 e~~L~~~v~fL~~lGl~~~~il~r~P~iL~~sle~~L~~r~~fL~~~Gls~~ev~~mi~~~P  392 (492)
                      ++.+...+.||+.            |.+-..+    +..++.||++.|++.+||..++.+..
T Consensus        15 e~li~~Av~FLqd------------p~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra~   60 (70)
T 2w84_A           15 EPLIATAVKFLQN------------SRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQSG   60 (70)
T ss_dssp             HHHHHHHHHHHCS------------TTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCC------------hhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHcc
Confidence            3456666666653            5444433    55689999999999999999888743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00