Citrus Sinensis ID: 011169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
MNGGDMSAPIKDPAIKLFGAKIPVPDTRIPDVCKQITKEEAEDNHEYNSEEPDKSSSLNNVKEGARNFVQANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEILESNPAALSRSHTFQEST
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccHHHHHHcHHHHHcccccccccccccccEEcccccccccccccccccHHHHccHHHHHccccccccc
Coil and Loop (DISEMBL)
mnggdmsapikdpaiklfgakipvpdtripdVCKQITKEeaednheynseepdkssslnnvKEGARNFVQANgiqanaktkadqsesntdqekafkrpdkiipcprcnsmdtkfcyfnnynvnqprhfckncqrywtaggtmrnvpvgagrrknkHFASQYRQILvssdgvpvtgletpnsanqqlmlcgdsattfrpstgngtvlkfgpetplcesMENVLNLRDQKRSVEICTVTCvenkeepsssgspvtassirgnelpesvmQKEQVMMTGscnelnmqqsmhcypvspwgvpwnpnnvasmeaaqnpsdrvcvpngsnpgpvqwcpttvlavpgfcapniplqfvpasywgmgvwaagagnipltgsngclspssstsnnsccsgngsptlgkhsrdpnltdegqsekcvlvpktlriddpdeasrspiwatlgfkpdqkdlksggaifkdfetkkggkadvldgaeilesnpaalsrshtfqest
Flexible Loop (DISEMBL)
mnggdmsapiKDPAIKLFgakipvpdtriPDVCKQITKeeaednheynseepdkssslNNVKEGARNFVQANGIqanaktkadqsesntdqekafkrpdkiipcprCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVlnlrdqkrsVEICTVTcvenkeepsssgspvtassirgneLPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSrdpnltdegqsekcvlvpktlriddpdeasrspiwatlgfkpdqkdlKSGGAIFKDFETKKGGKADVLDGAEIlesnpaalsrshtfqest
Low Complexity Region (SEG)
MNGGDMSAPIKDPAIKLFGAKIPVPDTRIPDVCKQITKEEAEDNHEYNSEEPDKSSSLNNVKEGARNFVQANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCVENKEEPsssgspvtassIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLtgsngclspssstsnnsccsgngsptLGKHSRDPNLTDEGQSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEILESNPAALSRSHTFQEST
Disordered region (IsUnstruct)
**************IKLFGAKIPVPDTRIPDVC******************************************************************KIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVT***********LMLCGD****F*****NGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCV**********************************************SMHCYPVSPWGVPWNPN***********************GPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTG*******************************************VLV****************IWATLGF************IF*************************************
Disordered Region (DISOPRED)
*************AIKLFGAKIPVP*********************************************************************************CNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTM*****************************************************************************************************************************************************VSPWGVPWNPNNVASMEA******************VQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPL**********************************************LVPKTLRIDDPDEASRSPIWATLGFKPD*******************************ESNPAALSR*HTF****
Disordered Region (DISEMBL)
MNGGDMSAPIKDPAIKLFGAKIPVPDTRIPDVCKQITKEE******************NNVKEGARNFVQANGIQA******************FKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCVE****************IRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTGSNGC****************GSPTLGKHSRDPNLTDEGQSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEILESNPAA***********
Disordered Region (DISPRO)
*********IKDPAIKLF*AKIPVP*********************************************************************FKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVG**********************************************T*****GNGTVLKFGPETPLCESMENVLNLRDQ**************************************************CNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTGSN*************************************SEKCVLVPKTLRIDDPDEASRSPIWATLGFKPD************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGGDMSAPIKDPAIKLFGAKIPVPDTRIPDVCKQITKEEAEDNHEYNSEEPDKSSSLNNVKEGARNFVQANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEILESNPAALSRSHTFQEST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q8LFV3	448	Cyclic dof factor 3 OS=Ar	yes	no	0.857	0.941	0.369	4e-62
Q93ZL5	457	Cyclic dof factor 2 OS=Ar	no	no	0.792	0.853	0.338	2e-57
Q8W1E3	298	Cyclic dof factor 1 OS=Ar	no	no	0.252	0.416	0.476	1e-35
Q9LQX4	366	Dof zinc finger protein D	no	no	0.268	0.360	0.482	2e-30
Q9SEZ3	399	Cyclic dof factor 5 OS=Ar	no	no	0.054	0.067	0.675	1e-29
P68350	175	Dof zinc finger protein D	no	no	0.126	0.354	0.887	4e-29
O22967	170	Cyclic dof factor 4 OS=Ar	no	no	0.152	0.441	0.763	3e-28
Q9M2U1	323	Dof zinc finger protein D	no	no	0.140	0.213	0.594	3e-21
Q8LDR0	307	Dof zinc finger protein D	no	no	0.132	0.211	0.656	5e-21
Q8LAP8	342	Dof zinc finger protein D	no	no	0.132	0.190	0.615	8e-21

>sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2

 Score =  239 bits (610), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 188/509 (36%), Positives = 247/509 (48%), Gaps = 87/509 (17%)

Query: 6   MSAPIKDPAIKLFGAKIPVPDTRIPDVCKQITKEEAEDNHEYNSEEPDKSS------SLN 59
           M    +DPAIKLFG KIP P   + +    +  +E +D    + + P+K +      + N
Sbjct: 1   MMMETRDPAIKLFGMKIPFPS--VFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNN 58

Query: 60  NVKEGARNFVQANGIQANAKTKADQSESNTDQE---------KAFKRPDKIIPCPRCNSM 110
           N  + + N  +   +     T  DQ ES+   E         K  K+P KI+PCPRC SM
Sbjct: 59  NCNDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSM 118

Query: 111 DTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDG 170
           +TKFCY+NNYN+NQPRHFCK CQRYWTAGGTMRNVPVGAGRRKNK  +S YR I + S+ 
Sbjct: 119 ETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITI-SEA 177

Query: 171 VPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLN-LRDQKR 229
           +    L+    AN +++  G  A     +     V+K   +  +     N  + L DQ+ 
Sbjct: 178 LEAARLDPGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQR- 236

Query: 230 SVEICTVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMH- 288
                 V  VEN ++  SSGS VT S+   + + ES  Q   V+     N  N   + + 
Sbjct: 237 -----LVARVENGDD-CSSGSSVTTSN--NHSVDESRAQSGSVVEAQMNNNNNNNMNGYA 288

Query: 289 CYPVSPWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPL 348
           C P  PW   WNP   A       P     +P                            
Sbjct: 289 CIPGVPWPYTWNP---AMPPPGFYPPPGYPMP---------------------------- 317

Query: 349 QFVPASYWGMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDP---- 404
            F P  YW           IP+   +   SP S       CS   SPTLGKH RD     
Sbjct: 318 -FYP--YW----------TIPMLPPHQSSSPISQK-----CSNTNSPTLGKHPRDEGSSK 359

Query: 405 --NLTDEGQSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETK- 461
             N T+  Q   CVLVPKTLRIDDP+EA++S IW TLG K ++   K+GG +FK F+ K 
Sbjct: 360 KDNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIK-NEAMCKAGG-MFKGFDHKT 417

Query: 462 KGGKADVLDGAEILESNPAALSRSHTFQE 490
           K    D  + + +L +NPAALSRSH F E
Sbjct: 418 KMYNNDKAENSPVLSANPAALSRSHNFHE 446

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 238/550 (43%), Gaps = 160/550 (29%)

Query: 10  IKDPAIKLFGAKIPVPD--------------------TRIPDVC---------------- 33
           + DPAIKLFG  IP+P+                     R+ D C                
Sbjct: 1   MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGR 60

Query: 34  -------KQITKEEAEDNHEYNSE--EPDKSSSLNNVKEGARNFVQANGIQANAKTKADQ 84
                      + E +   E +SE  E    +  N+V        +       AKT  + 
Sbjct: 61  EEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEES 120

Query: 85  SESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRN 144
             +   QE   K+PDKI+PCPRCNSM+TKFCY+NNYNVNQPRHFCK CQRYWTAGGTMRN
Sbjct: 121 GGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRN 180

Query: 145 VPVGAGRRKNKHFASQY-RQILVSS----DGVPVTGLETPNSANQQLMLCGDSATTFRPS 199
           VPVGAGRRKNK  AS Y R + ++S      V  T L+ PN AN                
Sbjct: 181 VPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTDLQHPNGAN---------------- 224

Query: 200 TGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCVENKEEPSSSGSPVTASSIRG 259
                +L FG ++ LCESM + LNL ++     + T T ++   E    G  +T    + 
Sbjct: 225 -----LLTFGSDSVLCESMASGLNLVEKSL---LKTQTVLQEPNE----GLKITVPLNQT 272

Query: 260 NELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSP--WGVPWNPNNVASMEAAQNPSDRV 317
           NE   +V    +V                C+P  P  W   WN                 
Sbjct: 273 NEEAGTVSPLPKV---------------PCFPGPPPTWPYAWN----------------- 300

Query: 318 CVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMGVWAAGAGNIPLTGSNGCL 377
                     V W   T+L             + P +YW     + GA N   T      
Sbjct: 301 ---------GVSW---TILPF-----------YPPPAYWSCPGVSPGAWNS-FTWMPQPN 336

Query: 378 SPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQS--------------EKCVLVPKTLR 423
           SPS S  N        SPTLGKHSRD N  + G +              E+C+ VPKTLR
Sbjct: 337 SPSGSNPN--------SPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLR 388

Query: 424 IDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAE-ILESNPAAL 482
           IDDP+EA++S IW TLG K D+ +  + GA     + K       L G    L++NPAAL
Sbjct: 389 IDDPEEAAKSSIWETLGIKKDE-NADTFGAFRSSTKEKSSLSEGRLPGRRPELQANPAAL 447

Query: 483 SRSHTFQEST 492
           SRS  F ES+
Sbjct: 448 SRSANFHESS 457

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 95/168 (56%), Gaps = 44/168 (26%)

Query: 11  KDPAIKLFGAKIPVPDTRIPDVCKQITKEEAEDNHEYNSEEPDKSSSLNNVKEGARNFVQ 70
           KDPAIKLFG KIP P         ++  EE E N                          
Sbjct: 5   KDPAIKLFGMKIPFP------TVLEVADEEEEKNQN------------------------ 34

Query: 71  ANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCK 130
                   KT  DQSE    ++K  K+P KI+PCPRCNSM+TKFCY+NNYNVNQPRHFCK
Sbjct: 35  --------KTLTDQSE----KDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCK 82

Query: 131 NCQRYWTAGGTMRNVPVGAGRRKNKHFA--SQYRQILVSSDGVPVTGL 176
            CQRYWT+GGTMR+VP+GAGRRKNK+ +  S Y  + +S    PV   
Sbjct: 83  ACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPVLSF 130

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQX4|DOF13_ARATH Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 96/147 (65%), Gaps = 15/147 (10%)

Query: 55  SSSLNN-VKEGARNFVQANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTK 113
           SS+LNN  KE + N   ++   +   T   + E  T+     K+PDKI+PCPRCNS DTK
Sbjct: 64  SSNLNNESKETSEN---SDDQHSEITTITSEEEKTTE----LKKPDKILPCPRCNSADTK 116

Query: 114 FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPV 173
           FCY+NNYNVNQPRHFC+ CQRYWTAGG+MR VPVG+GRRKNK + S  + + ++S+    
Sbjct: 117 FCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWVSSDQYLHITSEDT-- 174

Query: 174 TGLETPNSANQQLML--CGDSATTFRP 198
              +  NS++ +++     DS  T RP
Sbjct: 175 ---DNYNSSSTKILSFESSDSLVTERP 198

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEZ3|CDF5_ARATH Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 68/80 (85%)

Query: 90  DQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGA 149
           ++  A K+PDK+IPCPRC S +TKFCY+NNYNVNQPR+FC+NCQRYWTAGG+MRNVPVG+
Sbjct: 120 EKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGS 179

Query: 150 GRRKNKHFASQYRQILVSSD 169
           GRRKNK + S    + V+S+
Sbjct: 180 GRRKNKGWPSSNHYLQVTSE 199

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|P68350|DOF15_ARATH Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 58/62 (93%)

Query: 94  AFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRK 153
           A KRPDKIIPCPRC SM+TKFCYFNNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK
Sbjct: 54  AEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 113

Query: 154 NK 155
           +K
Sbjct: 114 SK 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|O22967|CDF4_ARATH Cyclic dof factor 4 OS=Arabidopsis thaliana GN=CDF4 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 80  TKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAG 139
           T A +S S++D   A KRPDKII CPRC SM+TKFCYFNNYNVNQPRHFCK C RYWTAG
Sbjct: 37  TIAVRSSSSSDL-TAEKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAG 95

Query: 140 GTMRNVPVGAGRRKNK 155
           G +RNVPVGAGRRK+K
Sbjct: 96  GALRNVPVGAGRRKSK 111

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%)

Query: 98  PDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHF 157
           P+  + CPRC+S +TKFCYFNNY++ QPRHFCK C+RYWT GG++RNVPVG G R+NK  
Sbjct: 72  PEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKRS 131

Query: 158 ASQYRQILV 166
            S+ +  +V
Sbjct: 132 KSRSKSTVV 140

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  102 bits (255), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 55/67 (82%), Gaps = 2/67 (2%)

Query: 102 IPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQY 161
           + CPRCNS++TKFCY+NNYN++QPRHFCKNC+RYWT GG +RNVPVG G RK K   S+ 
Sbjct: 51  LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKR--SKT 108

Query: 162 RQILVSS 168
           +Q+  SS
Sbjct: 109 KQVPSSS 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query: 91  QEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAG 150
           + KA    D+ + CPRCNS +TKFCY+NNY++ QPR+FCK C+RYWT GG++RN+PVG G
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 151 RRKNK 155
            RKNK
Sbjct: 102 SRKNK 106

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
255569414	506	conserved hypothetical protein [Ricinus	0.975	0.948	0.649	1e-164
224123914	494	predicted protein [Populus trichocarpa]	0.981	0.977	0.616	1e-163
225439183	494	PREDICTED: dof zinc finger protein DOF5.	0.983	0.979	0.613	1e-160
224144860	493	f-box family protein [Populus trichocarp	0.979	0.977	0.608	1e-156
296085888	465	unnamed protein product [Vitis vinifera]	0.928	0.982	0.592	1e-149
356571789	483	PREDICTED: dof zinc finger protein DOF5.	0.949	0.966	0.542	1e-139
255635928	483	unknown [Glycine max]	0.949	0.966	0.540	1e-138
449438006	503	PREDICTED: dof zinc finger protein DOF5.	0.934	0.914	0.526	1e-129
356506208	482	PREDICTED: LOW QUALITY PROTEIN: dof zinc	0.947	0.966	0.519	1e-126
449533128	477	PREDICTED: dof zinc finger protein DOF5.	0.892	0.920	0.530	1e-122

>gi|255569414|ref|XP_002525674.1| conserved hypothetical protein [Ricinus communis] gi|223534974|gb|EEF36657.1| conserved hypothetical protein [Ricinus communis]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 320/493 (64%), Positives = 365/493 (74%), Gaps = 13/493 (2%)

Query: 11  KDPAIKLFGAKIPVPDTRIP------DVCKQITKEEAEDNHEYNSEEPDKSSSLNNVKEG 64
           KDPA KLFG KIPVPDT+IP      + C    K E +   E N+ E DK S+    KE 
Sbjct: 16  KDPAFKLFGRKIPVPDTQIPAKPEFKNSCNDSIKGETDIYDEDNTGEQDKLSATGQTKEE 75

Query: 65  ARNFVQANGIQANAKTKADQSESN-TDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVN 123
            +   Q N  +A +  K DQ E+N TDQEK FK+PDKI+PCPRCNS+DTKFCYFNNYNVN
Sbjct: 76  RQTPKQVNE-EAQSGPKDDQVETNSTDQEKVFKKPDKILPCPRCNSLDTKFCYFNNYNVN 134

Query: 124 QPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSAN 183
           QPRHFCKNCQRYWTAGGTMRNVP+GAGRRKNKH ASQYRQILVSSDGVP+T +E   S N
Sbjct: 135 QPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQILVSSDGVPITRIENSESTN 194

Query: 184 QQLMLCGDSATTFRPS-TGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTCVENK 242
            QL+   +SATT RPS TGN  VLKFG E PLCESME VLNL DQKR  E+ +  C +N 
Sbjct: 195 HQLISSVESATTLRPSTTGNEVVLKFGSEAPLCESMETVLNLGDQKRYAEMSSANCRDNG 254

Query: 243 EEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVPWNP- 301
           EEPSS GS +T+SS RGNELPE+V QKE V M GS NELN+  S+HCYPV PW  PWNP 
Sbjct: 255 EEPSSCGSSMTSSSCRGNELPETVTQKELVGMPGSTNELNVPHSLHCYPVPPWVFPWNPN 314

Query: 302 -NNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWG-MG 359
            NN  S+  AQ+ + + C+PN +N   VQWCPT +LAVP FC P+IPLQ VPASY G M 
Sbjct: 315 WNNATSITTAQHSTGQPCMPNSNNSNQVQWCPTPILAVPSFCPPSIPLQLVPASYLGCMP 374

Query: 360 VWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQSEKCVLVP 419
           VW AGAGNI + GSNGC S  SS+++ SCCSGNGSP LGKHSRD NL  E Q E CVLVP
Sbjct: 375 VWGAGAGNISVNGSNGCSS-PSSSTSTSCCSGNGSPKLGKHSRDANLMGEEQVENCVLVP 433

Query: 420 KTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEILESNP 479
           KTLRIDDP+EAS+SP+WATLG K DQK+  S G IFK  ETK+ GK  V + A ILE+NP
Sbjct: 434 KTLRIDDPNEASKSPLWATLGLKLDQKNPASKGTIFKTSETKEEGKGHVPESAHILEANP 493

Query: 480 AALSRSHTFQEST 492
           AALSRS TFQES+
Sbjct: 494 AALSRSTTFQESS 506

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123914|ref|XP_002319195.1| predicted protein [Populus trichocarpa] gi|222857571|gb|EEE95118.1| predicted protein [Populus trichocarpa]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 306/496 (61%), Positives = 353/496 (71%), Gaps = 13/496 (2%)

Query: 6   MSAPIKDPAIKLFGAKIPVPDTRIP------DVCKQITKEEAEDNHEYNSEEPDKSSSLN 59
           M    KDPA KLFG KIPVPDT+ P        C +IT+ E +   E  SEEP+  S   
Sbjct: 1   MKGESKDPAFKLFGRKIPVPDTQFPAEPLAKGTCSEITRVETKGPSEDISEEPEMFSGSG 60

Query: 60  NVKEGARNFVQANGIQANAKTKADQSESN-TDQEKAFKRPDKIIPCPRCNSMDTKFCYFN 118
             KE ++  ++ N  Q  AK K    E+N TDQEK  K+PDKI+PCPRCNS+DTKFCYFN
Sbjct: 61  QGKEESQAAMRVNEAQVIAKHKEGPLETNGTDQEKVLKKPDKILPCPRCNSLDTKFCYFN 120

Query: 119 NYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLET 178
           NYNVNQPRHFCKNCQRYWTAGG+MRNVP+GAGRRKNKH A+QYRQILVSSDG+P+  +E 
Sbjct: 121 NYNVNQPRHFCKNCQRYWTAGGSMRNVPIGAGRRKNKHLATQYRQILVSSDGMPIARMEN 180

Query: 179 PNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTC 238
            +S   QL    +S TT  PS  NG VLKFG E PLC+SMENVLNL DQKR VEI +V  
Sbjct: 181 SDSIGHQLQSSVESGTTLSPSVANGMVLKFGHEAPLCDSMENVLNLGDQKRYVEISSVNR 240

Query: 239 VENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVP 298
            +N EEPSS GS  TAS+   NEL E++MQKEQV +  S NEL+   S+  Y V  W  P
Sbjct: 241 QDNVEEPSSCGSSKTASNAWANELRENIMQKEQVDVPASSNELSAPNSLPYYSVPSWVFP 300

Query: 299 WNP--NNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYW 356
           WNP  NNVASM AAQ+ + + CV N   P  VQ C T +LAVP  C PNIPLQFVPASYW
Sbjct: 301 WNPGWNNVASMTAAQHSTGQACVTN--IPNQVQLCSTPMLAVPSICPPNIPLQFVPASYW 358

Query: 357 G-MGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQSEKC 415
           G M  WAAG  N+ L+GSNGCLS S+S +N S CSGNGSPTLGKHSRD    +E ++EKC
Sbjct: 359 GCMPTWAAGTRNVSLSGSNGCLSLSTS-ANTSSCSGNGSPTLGKHSRDSKFMEEEKAEKC 417

Query: 416 VLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEIL 475
           +LVPKTLRIDDP EAS+SP+WATLG KPDQKD  S G IFK+FETK      V D   +L
Sbjct: 418 ILVPKTLRIDDPSEASKSPLWATLGLKPDQKDPASKGTIFKNFETKAECYGHVSDITHVL 477

Query: 476 ESNPAALSRSHTFQES 491
           E+NPAALSRSHTFQES
Sbjct: 478 EANPAALSRSHTFQES 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439183|ref|XP_002275127.1| PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 308/502 (61%), Positives = 361/502 (71%), Gaps = 18/502 (3%)

Query: 1   MNGGDMSAPIKDPAIKLFGAKIPV------PDTRIPDVCKQITKEEAEDNHEYNSEEPDK 54
           MNGGD++   +DPAIKLFG  I        P   + D   +ITK EAED    +S +PD 
Sbjct: 1   MNGGDLAV-SRDPAIKLFGTTIQTQICSNSPQKSL-DAPSEITKAEAEDPCAEDSRKPDG 58

Query: 55  SSSLNNVKEGARNFVQANGIQANAKTKADQSESNTD-QEKAFKRPDKIIPCPRCNSMDTK 113
           SS   + KE  +  VQ +G+Q +     DQ E+N+  QEK  K+PDKI+PCPRCNS++TK
Sbjct: 59  SSVSEDGKEEQQTQVQMSGLQVHK----DQGETNSSAQEKVLKKPDKILPCPRCNSLETK 114

Query: 114 FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPV 173
           FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKH ASQYRQI+VSSDGVP 
Sbjct: 115 FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRQIMVSSDGVPT 174

Query: 174 TGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEI 233
           T +E  +S+NQQ++ CG+++TTFRPST +GTVLKFGPE PLC+SME VL++R+QKR  E+
Sbjct: 175 TVIEASDSSNQQILSCGETSTTFRPSTASGTVLKFGPEAPLCKSMETVLSIREQKRCAEM 234

Query: 234 CTVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVS 293
            TV C  N EEPSS  S V+A S   NE PE+V  K++  +  S +E++ Q    CYPV 
Sbjct: 235 RTVNCGGNGEEPSSCASSVSAPSFPENEFPENVGHKDRPSLPASRSEIHPQLHQPCYPVP 294

Query: 294 PWGVPWNP--NNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFV 351
           PW  PWNP   NVA +   Q  SD V  PN SNP  VQWC   +LAVPGFCAP IPLQ V
Sbjct: 295 PWAFPWNPGWTNVAPVAPPQCSSDTVYAPNNSNPNSVQWCSRPMLAVPGFCAPTIPLQLV 354

Query: 352 PASYWG-MGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEG 410
           P SYWG M +W AG GNI L GSN CLSPSSSTSN+   SGN SPTLGKHSRD    +E 
Sbjct: 355 PPSYWGCMPIWGAGTGNISLAGSNDCLSPSSSTSNSC--SGNASPTLGKHSRDAQPAEEQ 412

Query: 411 QSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLD 470
           + EKCVLVPKTLRI DPDEAS+S IWATLG KPDQK   S G IFK FE K G K D+ D
Sbjct: 413 KLEKCVLVPKTLRIIDPDEASKSSIWATLGIKPDQKAPISKGGIFKAFEPKSGAKTDLSD 472

Query: 471 GAEILESNPAALSRSHTFQEST 492
             ++LE+NPAALSRS TF+EST
Sbjct: 473 ATQVLEANPAALSRSQTFKEST 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144860|ref|XP_002325441.1| f-box family protein [Populus trichocarpa] gi|222862316|gb|EEE99822.1| f-box family protein [Populus trichocarpa]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 302/496 (60%), Positives = 348/496 (70%), Gaps = 14/496 (2%)

Query: 6   MSAPIKDPAIKLFGAKIPVPDTRIP------DVCKQITKEEAEDNHEYNSEEPDKSSSLN 59
           M    KDPA KLFG KIPVPDT+ P        C  ITK E +   E NSEEP+  S+L 
Sbjct: 1   MKGESKDPAFKLFGRKIPVPDTQFPAEPLAKGSCSDITKLETKGPSEENSEEPEMFSALG 60

Query: 60  NVKEGARNFVQANGIQANAKTKADQSESN-TDQEKAFKRPDKIIPCPRCNSMDTKFCYFN 118
             +E  +  +Q N  +  AK K  Q E+N TD+E+ FK+PDKI+PCPRCN +DTKFCYFN
Sbjct: 61  QGEEEIQAAMQVNETEVIAKPKEGQLETNGTDKERVFKKPDKILPCPRCNCLDTKFCYFN 120

Query: 119 NYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLET 178
           NYNVNQPRHFCKNCQRYWTAGGTMRNVP+GAGRRKNKH A+QYRQILVSSDG+P+  +E 
Sbjct: 121 NYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLATQYRQILVSSDGMPIARMEN 180

Query: 179 PNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTC 238
            +SA  QL    +SATT  PST NGTVLKFGPE PLC+SME VLNL D KR VE+ +V  
Sbjct: 181 SDSAGHQLSSSVESATTLSPSTANGTVLKFGPEAPLCDSMETVLNLGDPKRYVEMSSVNY 240

Query: 239 VENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSPWGVP 298
            +N EEP S GS   +  +  NELPE++MQ EQV M  S N L+   S+ CY V  W  P
Sbjct: 241 QDNGEEPPSCGSSKASFIVCENELPENIMQ-EQVDMPASSNNLSAPHSLLCYSVPSWVFP 299

Query: 299 WNP--NNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYW 356
           WNP  NN  SM AAQ  S + C+ N   P  VQ CPT +LAVP  C PNIPLQFVPASYW
Sbjct: 300 WNPAWNNETSMAAAQYSSGQACITN--VPTQVQLCPTPMLAVPSICPPNIPLQFVPASYW 357

Query: 357 G-MGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQSEKC 415
           G M  W AG GN+PL GSNGCL+  SS++  S CSGNGSP LGKHSRD    DE ++EKC
Sbjct: 358 GCMPTWTAGTGNVPLCGSNGCLT-PSSSTTTSYCSGNGSPKLGKHSRDSKFMDEEKTEKC 416

Query: 416 VLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGAEIL 475
           +LVPKTLRIDDP EAS+SP+WAT G  P QKD  S G IFK+FETK  G   V D   +L
Sbjct: 417 ILVPKTLRIDDPSEASKSPLWATFGLPPAQKDPTSKGTIFKNFETKAEGCGHVSDATNVL 476

Query: 476 ESNPAALSRSHTFQES 491
           E+NPAALSRS TFQES
Sbjct: 477 EANPAALSRSQTFQES 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085888|emb|CBI31212.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 296/500 (59%), Positives = 346/500 (69%), Gaps = 43/500 (8%)

Query: 1   MNGGDMSAPIKDPAIKLFGAKIPV------PDTRIPDVCKQITKEEAEDNHEYNSEEPDK 54
           MNGGD++   +DPAIKLFG  I        P   + D   +ITK EAED    +S +PD 
Sbjct: 1   MNGGDLAVS-RDPAIKLFGTTIQTQICSNSPQKSL-DAPSEITKAEAEDPCAEDSRKPDG 58

Query: 55  SSSLNNVKEGARNFVQANGIQANAKTKADQSESNTD-QEKAFKRPDKIIPCPRCNSMDTK 113
           SS   + KE  +  VQ +G+Q +     DQ E+N+  QEK  K+PDKI+PCPRCNS++TK
Sbjct: 59  SSVSEDGKEEQQTQVQMSGLQVHK----DQGETNSSAQEKVLKKPDKILPCPRCNSLETK 114

Query: 114 FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPV 173
           FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKH ASQYRQI+VSSDGVP 
Sbjct: 115 FCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRQIMVSSDGVPT 174

Query: 174 TGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEI 233
           T +E  +S+NQQ++ CG+++TTFRPST +GTVLKFGPE PLC+SME VL++R+QKR  E+
Sbjct: 175 TVIEASDSSNQQILSCGETSTTFRPSTASGTVLKFGPEAPLCKSMETVLSIREQKRCAEM 234

Query: 234 CTVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVS 293
            TV C  N EEPSS  S V+A S   NE PE+V  K++  +  S             PV+
Sbjct: 235 RTVNCGGNGEEPSSCASSVSAPSFPENEFPENVGHKDRPSLPAS------------PPVA 282

Query: 294 PWGVPWNPNNVASMEAAQNPSDRVCVPNGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVPA 353
           P                Q  SD V  PN SNP  VQWC   +LAVPGFCAP IPLQ VP 
Sbjct: 283 P---------------PQCSSDTVYAPNNSNPNSVQWCSRPMLAVPGFCAPTIPLQLVPP 327

Query: 354 SYWG-MGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQS 412
           SYWG M +W AG GNI L GSN CLSPSSSTSN+   SGN SPTLGKHSRD    +E + 
Sbjct: 328 SYWGCMPIWGAGTGNISLAGSNDCLSPSSSTSNSC--SGNASPTLGKHSRDAQPAEEQKL 385

Query: 413 EKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDGA 472
           EKCVLVPKTLRI DPDEAS+S IWATLG KPDQK   S G IFK FE K G K D+ D  
Sbjct: 386 EKCVLVPKTLRIIDPDEASKSSIWATLGIKPDQKAPISKGGIFKAFEPKSGAKTDLSDAT 445

Query: 473 EILESNPAALSRSHTFQEST 492
           ++LE+NPAALSRS TF+EST
Sbjct: 446 QVLEANPAALSRSQTFKEST 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571789|ref|XP_003554055.1| PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/501 (54%), Positives = 343/501 (68%), Gaps = 34/501 (6%)

Query: 6   MSAPIKDPAIKLFGAKIPVPDTRIP------DVCKQITKEEAEDNHE--YNSEEPDKSSS 57
           MS   K P I+LFG KIPVP+ +IP      D C  I K E +   E   NSE+ + SS 
Sbjct: 1   MSQKEKGPGIRLFGRKIPVPECQIPANSGPTDTCCSIKKTELKIPSECGENSEQQENSSD 60

Query: 58  LNNVKEGARNFVQANGIQANAKTKADQSES-NTDQEKAFKRPDKIIPCPRCNSMDTKFCY 116
             + K+ +++ VQ N    N K   D  E+ ++DQ+K  K+PDKI+ CPRCNSMDTKFCY
Sbjct: 61  SRDSKQESQHKVQENEPIVNPKPVEDNMETGSSDQDKVLKKPDKILQCPRCNSMDTKFCY 120

Query: 117 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGL 176
           FNNYNVNQPRHFCKNCQRYWTAGGTMRNVP+GAGRRKNKH ASQY+ I+V+SDG+P + L
Sbjct: 121 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYQHIIVTSDGIPASRL 180

Query: 177 ETPNSA--NQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEIC 234
           ET +S+   QQ +   +S+ +FR S  N T+LKFG +TPLC+SM+++LNLRDQ+R  +  
Sbjct: 181 ETTDSSGLQQQHIASLESSVSFRSSADNCTMLKFGTDTPLCKSMDSMLNLRDQRRCADAS 240

Query: 235 TVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSP 294
           +++CVE + EPS  GS V  +  +GNEL                +E N    + CYPV P
Sbjct: 241 SISCVEYRGEPSLCGSSVMTNGAQGNEL----------------SEHNTSNWLQCYPVPP 284

Query: 295 WGVPW-NPNNVASMEAAQNPSDRVCVP-NGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVP 352
           W +P+   NNV SMEA    S  +C P N + P  +QWCPT ++A+PG C P+IPLQFVP
Sbjct: 285 WVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPTAMQWCPTPMVAIPGMCPPSIPLQFVP 344

Query: 353 ASYW-GMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQ 411
            SYW G  +W AG G + + GSN CLSP+SST NNSCCSGNGSPTLGKH+RD   TDE +
Sbjct: 345 PSYWSGTPLWNAGTGAVSI-GSNACLSPTSST-NNSCCSGNGSPTLGKHTRDTVCTDEEK 402

Query: 412 SEKCVLVPKTLRIDDPDEASRSPIW-ATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLD 470
           SEKCVLVPKT+RID P+EAS+SPI  ATL  K D++   S G I K  E K+ GK  VL 
Sbjct: 403 SEKCVLVPKTIRIDAPNEASKSPIIRATLAIKLDKQQFVSNGDILKKIEPKE-GKDRVLG 461

Query: 471 GAEILESNPAALSRSHTFQES 491
            ++ILE+NPAA+SR+H FQES
Sbjct: 462 ASQILEANPAAISRAHAFQES 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635928|gb|ACU18311.1| unknown [Glycine max]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/501 (54%), Positives = 342/501 (68%), Gaps = 34/501 (6%)

Query: 6   MSAPIKDPAIKLFGAKIPVPDTRIP------DVCKQITKEEAEDNHE--YNSEEPDKSSS 57
           MS   K P I+LFG KIPVP+ +IP      D C  I K E +   E   NSE+ + SS 
Sbjct: 1   MSQKEKGPGIRLFGRKIPVPECQIPANSGPTDTCCSIKKTELKIPSECGENSEQQENSSD 60

Query: 58  LNNVKEGARNFVQANGIQANAKTKADQSES-NTDQEKAFKRPDKIIPCPRCNSMDTKFCY 116
             + K+ +++ VQ N    N K   D  E+ ++DQ+K  K+PDKI+ CPRCNSMDTKFCY
Sbjct: 61  SRDSKQESQHKVQENEPIVNPKPVEDNMETGSSDQDKVLKKPDKILQCPRCNSMDTKFCY 120

Query: 117 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGL 176
           FNNYNVNQPRHFCKNCQRYWTAGGTMRNVP+GAGRRKNKH  SQY+ I+V+SDG+P + L
Sbjct: 121 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHRTSQYQHIIVTSDGIPASRL 180

Query: 177 ETPNSA--NQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEIC 234
           ET +S+   QQ +   +S+ +FR S  N T+LKFG +TPLC+SM+++LNLRDQ+R  +  
Sbjct: 181 ETTDSSGLQQQHIASLESSVSFRSSADNCTMLKFGTDTPLCKSMDSMLNLRDQRRCADAS 240

Query: 235 TVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSP 294
           +++CVE + EPS  GS V  +  +GNEL                +E N    + CYPV P
Sbjct: 241 SISCVEYRGEPSLCGSSVMTNGAQGNEL----------------SEHNTSNWLQCYPVPP 284

Query: 295 WGVPW-NPNNVASMEAAQNPSDRVCVP-NGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVP 352
           W +P+   NNV SMEA    S  +C P N + P  +QWCPT ++A+PG C P+IPLQFVP
Sbjct: 285 WVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPTAMQWCPTPMVAIPGMCPPSIPLQFVP 344

Query: 353 ASYW-GMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQ 411
            SYW G  +W AG G + + GSN CLSP+SST NNSCCSGNGSPTLGKH+RD   TDE +
Sbjct: 345 PSYWSGTPLWNAGTGAVSI-GSNACLSPTSST-NNSCCSGNGSPTLGKHTRDTVCTDEEK 402

Query: 412 SEKCVLVPKTLRIDDPDEASRSPIW-ATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLD 470
           SEKCVLVPKT+RID P+EAS+SPI  ATL  K D++   S G I K  E K+ GK  VL 
Sbjct: 403 SEKCVLVPKTIRIDAPNEASKSPIIRATLAIKLDKQQFVSNGDILKKIEPKE-GKDRVLG 461

Query: 471 GAEILESNPAALSRSHTFQES 491
            ++ILE+NPAA+SR+H FQES
Sbjct: 462 ASQILEANPAAISRAHAFQES 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438006|ref|XP_004136781.1| PREDICTED: dof zinc finger protein DOF5.2-like [Cucumis sativus]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/488 (52%), Positives = 329/488 (67%), Gaps = 28/488 (5%)

Query: 10  IKDPAIKLFGAKIPVPDTRI-------PDVCKQITKEEAEDNHEYNSEEPDKSSSL--NN 60
            KD AIKLFG  IP+P+++I       PD C  + K E   +   +S   ++SS L  +N
Sbjct: 15  FKDLAIKLFGRTIPLPESQISAAPLHNPDACNNLKKAEQSVSGAEDSCPSERSSVLVGDN 74

Query: 61  VKEGARNFVQANGIQANAKTKADQSESN-TDQEKAFKRPDKIIPCPRCNSMDTKFCYFNN 119
            +  A N V +N  ++    K +Q + N TDQE+AFK+PDKIIPCPRCNS++TKFCYFNN
Sbjct: 75  EENQASN-VTSNKGESELHLKEEQEDGNGTDQERAFKKPDKIIPCPRCNSLETKFCYFNN 133

Query: 120 YNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETP 179
           YNVNQPRHFCKNCQRYWTAGGTMRNVP+GAGRR+NK  ASQYRQI+VSS+GV  T LET 
Sbjct: 134 YNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQLASQYRQIIVSSEGVATTRLETS 193

Query: 180 NSANQQLMLCG-DSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEICTVTC 238
           ++ N   +L   +S +  RPS G+ TVLKFGPE PLCESME VL+L DQKRS+EI +  C
Sbjct: 194 DATNHHHLLSNIESPSALRPSNGSSTVLKFGPEAPLCESMETVLSLGDQKRSIEIGSAYC 253

Query: 239 VENKEEPSSSGSPVTASSIRGNELPESVMQK-EQVMMTGSCNELNMQQSMHCYPVSPWGV 297
            ++ EEPSS GS +T +SIRGNELP+SV+++ E V ++ S +++    ++HCYPV     
Sbjct: 254 GDSPEEPSSCGSSMTTTSIRGNELPKSVIERPEAVRLSNSSSDITASNTVHCYPVPQLVF 313

Query: 298 PWNPNNVASMEAAQN-PSDRVCVPNGS---NPGPVQWCPTTVLAVPGFCAPNIPLQFVPA 353
           P N    + + +A    SD   VPN S   NP PVQW P TVLAVPGFC P++PLQFVPA
Sbjct: 314 PLNQGGSSLISSAMTQSSDSTSVPNTSSHPNP-PVQWLPATVLAVPGFCTPSLPLQFVPA 372

Query: 354 SYWGMG-VW-AAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPN-LTDEG 410
           S WG   VW + G GN+ +  S+ C S +S+      C  + SPTLGKH RD N L ++ 
Sbjct: 373 SCWGCTPVWTSTGTGNLTVVPSDVCASQTST------CPTSSSPTLGKHLRDTNSLAEDE 426

Query: 411 QSEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKG-GKADVL 469
           +SEKCV+VPKTLR+D+P EASRSPIW T G  P  K+  S G++F+  ET     K    
Sbjct: 427 KSEKCVVVPKTLRVDNPSEASRSPIWTTFGIHPYPKENISKGSVFETSETTNADSKGHFR 486

Query: 470 DGAEILES 477
           D  +ILE+
Sbjct: 487 DTPQILEA 494

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506208|ref|XP_003521879.1| PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein DOF3.3-like [Glycine max]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/499 (51%), Positives = 333/499 (66%), Gaps = 33/499 (6%)

Query: 6   MSAPIKDPAIKLFGAKIPVPDTRIP------DVCKQITKEEAEDNHE--YNSEEPDKSSS 57
           MS   KDP I+LFG KIPVP+ +IP      D C  I K E     E   N+E+ + SS 
Sbjct: 1   MSQTEKDPGIRLFGRKIPVPECQIPANSGPKDACSSIMKTELGIPSECGENTEQQENSSD 60

Query: 58  LNNVKEGARNFVQANGIQANAKTKADQSES-NTDQEKAFKRPDKIIPCPRCNSMDTKFCY 116
             + K+ +++ +Q N    N K   D  E+ ++DQ+K  K+PDKI+ CPRCNS+DTKFCY
Sbjct: 61  SRDSKQESQHKLQENEPIVNPKPAEDDMETGSSDQDKVLKKPDKILQCPRCNSLDTKFCY 120

Query: 117 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGL 176
           FNNYNVNQPRHFCKNCQRYWTAGGTMRNVP+GAGRRKNKH ASQYR I+V+SDG+P + L
Sbjct: 121 FNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPTSRL 180

Query: 177 ETPNSA--NQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLNLRDQKRSVEIC 234
           ET +S+   QQ +   +S+  FR S  N       P + L ESM+++LNLRDQ+R V+  
Sbjct: 181 ETTDSSGLQQQHIASLESSVPFRSSAXNAGAFLHPPISQLGESMDSMLNLRDQRRCVDAS 240

Query: 235 TVTCVENKEEPSSSGSPVTASSIRGNELPESVMQKEQVMMTGSCNELNMQQSMHCYPVSP 294
           +++CVE + EPS  GS VT +  +G+EL                +E +    + CYPV P
Sbjct: 241 SISCVEYRGEPSLYGSSVTTNGAQGSEL----------------SEHSPSNWLQCYPVPP 284

Query: 295 WGVPW-NPNNVASMEAAQNPSDRVCVP-NGSNPGPVQWCPTTVLAVPGFCAPNIPLQFVP 352
           W +P+   NNV SMEA    S  +C P N + P  +QWCPT ++A+PG C P+IPLQFVP
Sbjct: 285 WVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPAAMQWCPTPMVAIPGMCPPSIPLQFVP 344

Query: 353 ASYW-GMGVWAAGAGNIPLTGSNGCLSPSSSTSNNSCCSGNGSPTLGKHSRDPNLTDEGQ 411
            SYW G  +W AG G + + GSN CLS  SS+++NSCCSGNGSPTLGKH+RD   T+E +
Sbjct: 345 PSYWSGTQLWNAGTGTVSI-GSNACLS-PSSSTSNSCCSGNGSPTLGKHTRDTVCTNEEK 402

Query: 412 SEKCVLVPKTLRIDDPDEASRSPIWATLGFKPDQKDLKSGGAIFKDFETKKGGKADVLDG 471
           SEKCV VPKT+RID P+EAS+SPI ATL  KPD +   S G I K  E K+ GK  +L  
Sbjct: 403 SEKCVSVPKTIRIDAPNEASKSPIRATLAIKPDMQQFVSNGDILKKNEPKE-GKDRMLGA 461

Query: 472 AEILESNPAALSRSHTFQE 490
           ++ILE+NPAA+SR+H FQE
Sbjct: 462 SQILEANPAAISRAHAFQE 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533128|ref|XP_004173529.1| PREDICTED: dof zinc finger protein DOF5.2-like, partial [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/460 (53%), Positives = 312/460 (67%), Gaps = 21/460 (4%)

Query: 31  DVCKQITKEEAEDNHEYNSEEPDKSSSL--NNVKEGARNFVQANGIQANAKTKADQSESN 88
           D C  + K E   +   +S   ++SS L  +N +  A N V +N  ++    K +Q + N
Sbjct: 17  DACNNLKKAEQSVSGAEDSCPSERSSVLVGDNEENQASN-VTSNKGESELHLKEEQEDGN 75

Query: 89  -TDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPV 147
            TDQE+AFK+PDKIIPCPRCNS++TKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVP+
Sbjct: 76  GTDQERAFKKPDKIIPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPI 135

Query: 148 GAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQQLMLCG-DSATTFRPSTGNGTVL 206
           GAGRR+NK  ASQYRQI+VSS+GV  T LET ++ N   +L   +S +  RPS G+ TVL
Sbjct: 136 GAGRRRNKQLASQYRQIIVSSEGVATTRLETSDATNHHHLLSNIESPSALRPSNGSSTVL 195

Query: 207 KFGPETPLCESMENVLNLRDQKRSVEICTVTCVENKEEPSSSGSPVTASSIRGNELPESV 266
           KFGPE PLCESME VL+L DQKRS+EI +  C ++ EEPSS GS +T +SIRGNELP+SV
Sbjct: 196 KFGPEAPLCESMETVLSLGDQKRSIEIGSAYCGDSPEEPSSCGSSMTTTSIRGNELPKSV 255

Query: 267 MQK-EQVMMTGSCNELNMQQSMHCYPVSPWGVPWNPNNVASMEAAQN-PSDRVCVPNGS- 323
           +++ E V ++ S +++    ++HCYPV     P N    + + +A    SD   VPN S 
Sbjct: 256 IERPEAVRLSNSSSDITASNTVHCYPVPQLVFPLNQGGSSLISSAMTQSSDSTSVPNTSS 315

Query: 324 --NPGPVQWCPTTVLAVPGFCAPNIPLQFVPASYWGMG-VW-AAGAGNIPLTGSNGCLSP 379
             NP PVQW P TVLAVPGFC P++PLQFVPAS WG   VW + G GN+ +  S+ C S 
Sbjct: 316 HPNP-PVQWLPATVLAVPGFCTPSLPLQFVPASCWGCTPVWTSTGTGNLTVVPSDVCASQ 374

Query: 380 SSSTSNNSCCSGNGSPTLGKHSRDPN-LTDEGQSEKCVLVPKTLRIDDPDEASRSPIWAT 438
           +S+      C  + SPTLGKH RD N L ++ +SEKCV+VPKTLR+D+P EASRSPIW T
Sbjct: 375 TST------CPTSSSPTLGKHLRDTNSLAEDEKSEKCVVVPKTLRVDNPSEASRSPIWTT 428

Query: 439 LGFKPDQKDLKSGGAIFKDFETKKG-GKADVLDGAEILES 477
            G  P  K+  S G++F+  ET     K    D  +ILE+
Sbjct: 429 FGIHPYPKENISKGSVFETSETTNADSKGHFRDTPQILEA 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2079152	448	CDF3 "cycling DOF factor 3" [A	0.581	0.638	0.366	6.1e-66
TAIR|locus:2164860	457	CDF2 "cycling DOF factor 2" [A	0.347	0.374	0.465	1.4e-60
TAIR|locus:2154079	298	CDF1 "AT5G62430" [Arabidopsis	0.184	0.305	0.649	1.4e-53
TAIR|locus:2007151	399	AT1G69570 [Arabidopsis thalian	0.327	0.403	0.426	4.4e-49
TAIR|locus:2030006	175	AT1G29160 [Arabidopsis thalian	0.182	0.514	0.621	1.3e-29
TAIR|locus:2055506	170	AT2G34140 [Arabidopsis thalian	0.152	0.441	0.763	7.1e-29
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.270	0.410	0.408	1.3e-23
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.182	0.350	0.478	3.2e-23
TAIR|locus:2032153	325	AT1G28310 [Arabidopsis thalian	0.203	0.307	0.46	6.2e-23
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.266	0.385	0.426	8e-23

TAIR|locus:2079152 CDF3 "cycling DOF factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 114/311 (36%), Positives = 152/311 (48%)

Query:     6 MSAPIKDPAIKLFGAKIPVPDTRIPDVCKQITKEEAEDNHEYNSEE---PDKSS-SLNNV 61
             M    +DPAIKLFG KIP P      V  +  +E+     +  S E   P+ S  + NN 
Sbjct:     1 MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNC 60

Query:    62 KEGARNFVQANGIQANAKTKADQSESNTDQE---------KAFKRPDKIIPCPRCNSMDT 112
              + + N  +   +     T  DQ ES+   E         K  K+P KI+PCPRC SM+T
Sbjct:    61 NDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSMET 120

Query:   113 KFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVP 172
             KFCY+NNYN+NQPRHFCK CQRYWTAGGTMRNVPVGAGRRKNK  +S YR I +S + + 
Sbjct:   121 KFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITIS-EALE 179

Query:   173 VTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLCESMENVLN-LRDQKRSV 231
                L+    AN +++  G  A     +     V+K   +  +     N  + L DQ+   
Sbjct:   180 AARLDPGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQR--- 236

Query:   232 EICTVTCVENKEEPXXXXXXXXXXXIRGNELPESVMQKEQVMMTGSCNELNMQQSMH-CY 290
                 V  VEN ++               + + ES  Q   V+     N  N   + + C 
Sbjct:   237 ---LVARVENGDDCSSGSSVTTS---NNHSVDESRAQSGSVVEAQMNNNNNNNMNGYACI 290

Query:   291 PVSPWGVPWNP 301
             P  PW   WNP
Sbjct:   291 PGVPWPYTWNP 301

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2164860 CDF2 "cycling DOF factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
 Identities = 88/189 (46%), Positives = 112/189 (59%)

Query:    38 KEEAEDNHEYNSEEPDKS--SSLNNVKEGARNFVQANGIQANAKTKADQSESNTDQEKAF 95
             + E +   E +SE  ++S  +  N+V        +       AKT  +   +   QE   
Sbjct:    72 ESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKL 131

Query:    96 KRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 155
             K+PDKI+PCPRCNSM+TKFCY+NNYNVNQPRHFCK CQRYWTAGGTMRNVPVGAGRRKNK
Sbjct:   132 KKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNK 191

Query:   156 HFASQYRQILVSSDGVPVTGLETPNSANQQLMLCGDSATTFRPSTGNGTVLKFGPETPLC 215
               AS Y +       V +T  E    A Q++     + T  +   G   +L FG ++ LC
Sbjct:   192 SPASHYNR------HVSITSAE----AMQKV-----ARTDLQHPNG-ANLLTFGSDSVLC 235

Query:   216 ESMENVLNL 224
             ESM + LNL
Sbjct:   236 ESMASGLNL 244

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2154079 CDF1 "AT5G62430" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
 Identities = 63/97 (64%), Positives = 76/97 (78%)

Query:    79 KTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTA 138
             KT  DQSE    ++K  K+P KI+PCPRCNSM+TKFCY+NNYNVNQPRHFCK CQRYWT+
Sbjct:    35 KTLTDQSE----KDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTS 90

Query:   139 GGTMRNVPVGAGRRKNKHFA--SQYRQILVSSDGVPV 173
             GGTMR+VP+GAGRRKNK+ +  S Y  + +S    PV
Sbjct:    91 GGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPV 127

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2007151 AT1G69570 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 4.4e-49, Sum P(3) = 4.4e-49
 Identities = 72/169 (42%), Positives = 103/169 (60%)

Query:     5 DMSA-PIKDPAIKLFGAKIP-VPDTRIPDVCKQITKEEAEDNHEYNS-EEPDKS-SSLNN 60
             D+S+ P K+ +     +  P +   R+P    +    + +D +  +   EP K+ S +++
Sbjct:    35 DVSSDPSKEDSSSSSSSCSPTIGPIRVPVKKSEQESNKFKDPYILSDLNEPPKAVSEISS 94

Query:    61 VKEGARNFVQANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNY 120
              +    N  Q + I     T     E +T    A K+PDK+IPCPRC S +TKFCY+NNY
Sbjct:    95 PRSSKNNCDQQSEITTTTTTSTTSGEKST----ALKKPDKLIPCPRCESANTKFCYYNNY 150

Query:   121 NVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSD 169
             NVNQPR+FC+NCQRYWTAGG+MRNVPVG+GRRKNK + S    + V+S+
Sbjct:   151 NVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWPSSNHYLQVTSE 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2030006 AT1G29160 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 59/95 (62%), Positives = 70/95 (73%)

Query:    61 VKEGARNFVQANGIQANAKTKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNY 120
             +K+  +   Q   +QA    ++  S+   +     KRPDKIIPCPRC SM+TKFCYFNNY
Sbjct:    26 IKKEEQQQQQQPELQATTAVRSPSSDLTAE-----KRPDKIIPCPRCKSMETKFCYFNNY 80

Query:   121 NVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 155
             NVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct:    81 NVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2055506 AT2G34140 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 58/76 (76%), Positives = 64/76 (84%)

Query:    80 TKADQSESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAG 139
             T A +S S++D   A KRPDKII CPRC SM+TKFCYFNNYNVNQPRHFCK C RYWTAG
Sbjct:    37 TIAVRSSSSSDLT-AEKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAG 95

Query:   140 GTMRNVPVGAGRRKNK 155
             G +RNVPVGAGRRK+K
Sbjct:    96 GALRNVPVGAGRRKSK 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 58/142 (40%), Positives = 79/142 (55%)

Query:    55 SSSLNNVKEGARNFVQANGIQANAKTKADQSESNTDQEKAFK----RPDKIIPCPRCNSM 110
             SS+ NN  +    F+  N  + NA      S  NT+     +    RP + + CPRCNS 
Sbjct:    24 SSTNNNTPQQQPTFIATN-TRPNATASNGGSGGNTNNTATMETRKARPQEKVNCPRCNST 82

Query:   111 DTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKH----FASQYRQILV 166
             +TKFCY+NNY++ QPR+FCK C+RYWT GG++RNVPVG   RKNK      AS     L 
Sbjct:    83 NTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLP 142

Query:   167 SSDGVPVTGLETPNSANQQLML 188
               +   +   + PN +N+ L L
Sbjct:   143 DLNPPILFSSQIPNKSNKDLNL 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query:    70 QANGIQANAK-TKADQSESNTDQEKAFKRP---DKIIPCPRCNSMDTKFCYFNNYNVNQP 125
             +A G+  ++  T  D  +       A  RP   +  + CPRC+S +TKFCY+NNY++ QP
Sbjct:    19 EAMGLSYSSNPTPLDNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQP 78

Query:   126 RHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFAS 159
             R+FCK+C+RYWT GGT+RN+PVG G RKNK   S
Sbjct:    79 RYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTS 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032153 AT1G28310 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 6.2e-23, P = 6.2e-23
 Identities = 46/100 (46%), Positives = 64/100 (64%)

Query:    85 SESNTDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRN 144
             S     Q++  ++P   + CPRC+S +TKFCY+NNY+++QPRHFCK C+RYWT GGT+RN
Sbjct:    24 SSHQQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRN 83

Query:   145 VPVGAGRRKNKHFASQYRQILVSSDGVPVTGLETPNSANQ 184
             VPVG   RKNK           ++  V  T   +PN+ +Q
Sbjct:    84 VPVGGSYRKNKRVKRPSTATTTTASTVSTTNSSSPNNPHQ 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 61/143 (42%), Positives = 81/143 (56%)

Query:    74 IQANAKTKADQSESN---TDQEKAFKR---PDKIIPCPRCNSMDTKFCYFNNYNVNQPRH 127
             ++  A T  D S  N    ++ +  K    P+  + CPRC+S +TKFCYFNNYN+ QPRH
Sbjct:    60 VETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRH 119

Query:   128 FCKNCQRYWTAGGTMRNVPVGAGRRKNKHFASQYRQILVSSDGVPVTGL---ETP-NSAN 183
             FCK C+RYWT GG +RNVPVG G R+NK   S   +   SS     T +    +P N++N
Sbjct:   120 FCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMVNATSPTNTSN 179

Query:   184 QQLMLCGDSATTFRPSTGNGTVL 206
              QL    +S   F P+  N T L
Sbjct:   180 VQLQT--NSQFPFLPTLQNLTQL 200

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFV3	CDF3_ARATH	No assigned EC number	0.3693	0.8577	0.9419	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	3e-39

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  136 bits (343), Expect = 3e-39
 Identities = 47/63 (74%), Positives = 57/63 (90%)

Query: 97  RPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKH 156
           +PDK + CPRC+SM+TKFCY+NNYN+NQPR+FCKNC+RYWTAGG +RNVPVG GRRKNK 
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 157 FAS 159
            +S
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	87.51
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	86.39
COG3677	129	Transposase and inactivated derivatives [DNA repli	84.2
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	84.15
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	80.34

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=4.6e-36  Score=239.03  Aligned_cols=63  Identities=67%  Similarity=1.417  Sum_probs=60.9

Q ss_pred             CCCCccCCCCCCCCCCceeeecccCCCCCccccccchhhhccCCcccccccCcccccCCCCcc
Q 011169           97 RPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHFAS  159 (492)
Q Consensus        97 ~p~~~~~CPrc~s~~tkfcyynny~~~qpR~~Ck~C~RywT~GG~lRnvPvGgG~RKnk~s~s  159 (492)
                      +|++.++||||+|++|||||||||++.||||||++|+||||+||+|||||||||+||+|+++|
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            588999999999999999999999999999999999999999999999999999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=87.51  E-value=0.23  Score=46.12  Aligned_cols=34  Identities=26%  Similarity=0.687  Sum_probs=27.4

Q ss_pred             ccCCCCCCCCCCceeeeccc--CCCCCccccccchhhh
Q 011169          101 IIPCPRCNSMDTKFCYFNNY--NVNQPRHFCKNCQRYW  136 (492)
Q Consensus       101 ~~~CPrc~s~~tkfcyynny--~~~qpR~~Ck~C~Ryw  136 (492)
                      ...||||.|.+|+..  +.|  +.++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCcH
Confidence            589999999999965  555  5568889999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=86.39  E-value=0.57  Score=35.26  Aligned_cols=31  Identities=35%  Similarity=0.810  Sum_probs=24.1

Q ss_pred             CCCCccCCCCCCCCCCceeeecccCCCCCccccccchh
Q 011169           97 RPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQR  134 (492)
Q Consensus        97 ~p~~~~~CPrc~s~~tkfcyynny~~~qpR~~Ck~C~R  134 (492)
                      =|+. ..||+|.+.  ++..+.+    +.+|.|++|++
T Consensus        15 W~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   15 WPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            4444 669999998  6666666    78899999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=84.20  E-value=0.63  Score=42.43  Aligned_cols=35  Identities=29%  Similarity=0.662  Sum_probs=27.9

Q ss_pred             cCCCCCCCCCCceeeecccCCCCCccccccchhhhcc
Q 011169          102 IPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTA  138 (492)
Q Consensus       102 ~~CPrc~s~~tkfcyynny~~~qpR~~Ck~C~RywT~  138 (492)
                      .-||+|.+.+  +-=++-+.....|+.|++|++-|+.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            4799999999  4445555556999999999998874

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=84.15  E-value=0.51  Score=34.77  Aligned_cols=31  Identities=32%  Similarity=0.692  Sum_probs=21.7

Q ss_pred             ccCCCCCCCCCCceeeecccCCC-CCccccccch
Q 011169          101 IIPCPRCNSMDTKFCYFNNYNVN-QPRHFCKNCQ  133 (492)
Q Consensus       101 ~~~CPrc~s~~tkfcyynny~~~-qpR~~Ck~C~  133 (492)
                      .+.||||.+.+.  -|=|-.+.. ..||+|++|+
T Consensus         5 ~v~CP~C~s~~~--v~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEG--VKKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCc--ceeCCCCCCCCEeEecCcCC
Confidence            368999999772  233444443 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=80.34  E-value=1.5  Score=32.64  Aligned_cols=37  Identities=24%  Similarity=0.828  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCCceeeecccCCCCC---ccccccchhhhcc
Q 011169          102 IPCPRCNSMDTKFCYFNNYNVNQP---RHFCKNCQRYWTA  138 (492)
Q Consensus       102 ~~CPrc~s~~tkfcyynny~~~qp---R~~Ck~C~RywT~  138 (492)
                      .+||+|...+.-|-..+-.....|   -|.|.+|...|..
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999977777666666655555   4999999999863

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	89.4
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	82.35

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.40  E-value=0.2  Score=38.86  Aligned_cols=51  Identities=18%  Similarity=0.444  Sum_probs=37.3

Q ss_pred             chhccccCCCCCccCCCCCCCCCCceeeecccCCCCCc---cccccchhhhccCCc
Q 011169           89 TDQEKAFKRPDKIIPCPRCNSMDTKFCYFNNYNVNQPR---HFCKNCQRYWTAGGT  141 (492)
Q Consensus        89 ~~~~~~~~~p~~~~~CPrc~s~~tkfcyynny~~~qpR---~~Ck~C~RywT~GG~  141 (492)
                      ..++.+|++-  ...||+|...+.-|-+.+-....-|-   |.|.+|.-.|+..++
T Consensus        13 ~~~DPtlp~t--~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          13 IGSDPTLPRS--DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             GGGCTTSCCC--CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             cccCCCCCcc--CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            4556677654  35999999877777666665544443   899999999998655

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=0.37  Score=35.08  Aligned_cols=39  Identities=15%  Similarity=0.661  Sum_probs=30.9

Q ss_pred             CCCccCCCCCCCCCCceeeecccCCCCCc---cccccchhhh
Q 011169           98 PDKIIPCPRCNSMDTKFCYFNNYNVNQPR---HFCKNCQRYW  136 (492)
Q Consensus        98 p~~~~~CPrc~s~~tkfcyynny~~~qpR---~~Ck~C~Ryw  136 (492)
                      +...+.||+|...+..|--+|......|-   +.|.+|..-|
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            34567999999888777777777666665   8999999888